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d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-001 [Transcript ID] ENST00000389301 [bp] 5451 [Protein] 1455aa [Translation ID] ENSP00000373952 [CCDS] CCDS32515 [UniProt] O15360 [RefSeq] NM_000135 NP_000126 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-002 [Transcript ID] ENST00000568369 [bp] 4601 [Protein] 1424aa [Translation ID] ENSP00000456829 [CCDS] CCDS67099 [UniProt] O15360 [RefSeq] NM_001286167 NP_001273096 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-003 [Transcript ID] ENST00000389302 [bp] 1641 [Protein] 297aa [Translation ID] ENSP00000373953 [CCDS] CCDS42221 [UniProt] O15360 [RefSeq] NM_001018112 NP_001018122 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-006 [Transcript ID] ENST00000563673 [bp] 1694 [Protein] 316aa [Translation ID] ENSP00000456443 [CCDS] - [UniProt] H3BRX3 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-201 [Transcript ID] ENST00000534992 [bp] 1088 [Protein] 302aa [Translation ID] ENSP00000443675 [CCDS] - [UniProt] F5H8D5 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-004 [Transcript ID] ENST00000543736 [bp] 1000 [Protein] 265aa [Translation ID] ENSP00000443409 [CCDS] - [UniProt] Q0VAP4 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-028 [Transcript ID] ENST00000564475 [bp] 732 [Protein] 240aa [Translation ID] ENSP00000454977 [CCDS] - [UniProt] H3BNS0 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-026 [Transcript ID] ENST00000567879 [bp] 713 [Protein] 214aa [Translation ID] ENSP00000457006 [CCDS] - [UniProt] H3BT40 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-027 [Transcript ID] ENST00000561722 [bp] 696 [Protein] 195aa [Translation ID] ENSP00000456608 [CCDS] - [UniProt] H3BSA3 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-030 [Transcript ID] ENST00000564870 [bp] 460 [Protein] 153aa [Translation ID] ENSP00000456481 [CCDS] - [UniProt] H3BS03 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-021 [Transcript ID] ENST00000567988 [bp] 915 [Protein] 109aa [Translation ID] ENSP00000454217 [CCDS] - [UniProt] H3BM41 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-010 [Transcript ID] ENST00000567943 [bp] 860 [Protein] 158aa [Translation ID] ENSP00000455941 [CCDS] - [UniProt] H3BQU1 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-012 [Transcript ID] ENST00000565582 [bp] 812 [Protein] 210aa [Translation ID] ENSP00000456722 [CCDS] - [UniProt] H3BSI9 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-022 [Transcript ID] ENST00000561660 [bp] 762 [Protein] 182aa [Translation ID] ENSP00000456588 [CCDS] - [UniProt] H3BS84 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-023 [Transcript ID] ENST00000568626 [bp] 727 [Protein] 168aa [Translation ID] ENSP00000455974 [CCDS] - [UniProt] H3BQX1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-019 [Transcript ID] ENST00000563510 [bp] 633 [Protein] 51aa [Translation ID] ENSP00000456993 [CCDS] - [UniProt] H3BT32 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-013 [Transcript ID] ENST00000567621 [bp] 618 [Protein] 125aa [Translation ID] ENSP00000456762 [CCDS] - [UniProt] H3BSL6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-020 [Transcript ID] ENST00000563318 [bp] 605 [Protein] 77aa [Translation ID] ENSP00000457970 [CCDS] - [UniProt] H3BV66 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-011 [Transcript ID] ENST00000563513 [bp] 571 [Protein] 114aa [Translation ID] ENSP00000455946 [CCDS] - [UniProt] H3BQU6 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-016 [Transcript ID] ENST00000567510 [bp] 461 [Protein] 101aa [Translation ID] ENSP00000455969 [CCDS] - [UniProt] H3BQW7 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-008 [Transcript ID] ENST00000567205 [bp] 413 [Protein] 63aa [Translation ID] ENSP00000457027 [CCDS] - [UniProt] H3BT53 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-007 [Transcript ID] ENST00000566409 [bp] 395 [Protein] 41aa [Translation ID] ENSP00000457647 [CCDS] - [UniProt] H3BUI1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-031 [Transcript ID] ENST00000567284 [bp] 479 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-005 [Transcript ID] ENST00000566889 [bp] 2201 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-009 [Transcript ID] ENST00000305699 [bp] 1430 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-024 [Transcript ID] ENST00000564969 [bp] 850 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-014 [Transcript ID] ENST00000566133 [bp] 761 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-029 [Transcript ID] ENST00000562424 [bp] 745 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-025 [Transcript ID] ENST00000568983 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-032 [Transcript ID] ENST00000567883 [bp] 650 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-017 [Transcript ID] ENST00000563767 [bp] 578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
70b9f172_t__FANCA_003__ENST00000389302___Biotype
|
[Name] FANCA-018 [Transcript ID] ENST00000561667 [bp] 528 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-001 [Transcript ID] ENST00000264808 [bp] 5330 [Protein] 630aa [Translation ID] ENSP00000264808 [CCDS] CCDS3716 [UniProt] Q9NQX1 [RefSeq] NM_018699 NP_061169 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-006 [Transcript ID] ENST00000428209 [bp] 2338 [Protein] 599aa [Translation ID] ENSP00000404832 [CCDS] CCDS75188 [UniProt] Q9NQX1 [RefSeq] NM_001300823 NP_001287752 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-005 [Transcript ID] ENST00000515109 [bp] 2259 [Protein] 501aa [Translation ID] ENSP00000422309 [CCDS] CCDS75187 [UniProt] Q9NQX1 [RefSeq] NM_001300824 NP_001287753 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-002 [Transcript ID] ENST00000394435 [bp] 2492 [Protein] 111aa [Translation ID] ENSP00000377955 [CCDS] - [UniProt] Q9NQX1 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-009 [Transcript ID] ENST00000502409 [bp] 1044 [Protein] 145aa [Translation ID] ENSP00000424861 [CCDS] - [UniProt] H0Y9S1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-011 [Transcript ID] ENST00000506065 [bp] 696 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-007 [Transcript ID] ENST00000505033 [bp] 576 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-012 [Transcript ID] ENST00000513741 [bp] 210 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-004 [Transcript ID] ENST00000505484 [bp] 2396 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-003 [Transcript ID] ENST00000512845 [bp] 1249 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-010 [Transcript ID] ENST00000503661 [bp] 847 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
aab34bbf__Gene__PRDM5__ENSG00000138738___Biotype
|
[Name] PRDM5-008 [Transcript ID] ENST00000507611 [bp] 535 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-001 [Transcript ID] ENST00000409134 [bp] 4964 [Protein] 539aa [Translation ID] ENSP00000387123 [CCDS] CCDS4137 [UniProt] P49419 [RefSeq] NM_001182 NM_001201377 NP_001173 NP_001188306 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-201 [Transcript ID] ENST00000447989 [bp] 4742 [Protein] 502aa [Translation ID] ENSP00000414132 [CCDS] CCDS56380 [UniProt] P49419 [RefSeq] NM_001202404 NP_001189333 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-017 [Transcript ID] ENST00000553117 [bp] 1935 [Protein] 475aa [Translation ID] ENSP00000448593 [CCDS] - [UniProt] F8VS02 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-006 [Transcript ID] ENST00000413020 [bp] 970 [Protein] 294aa [Translation ID] ENSP00000487936 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-016 [Transcript ID] ENST00000510111 [bp] 719 [Protein] 240aa [Translation ID] ENSP00000447388 [CCDS] - [UniProt] H0YHM6 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-015 [Transcript ID] ENST00000509270 [bp] 446 [Protein] 141aa [Translation ID] ENSP00000449318 [CCDS] - [UniProt] F8VVF2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-004 [Transcript ID] ENST00000458249 [bp] 1031 [Protein] 97aa [Translation ID] ENSP00000403929 [CCDS] - [UniProt] F8WD33 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-013 [Transcript ID] ENST00000503281 [bp] 906 [Protein] 41aa [Translation ID] ENSP00000488032 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-002 [Transcript ID] ENST00000412186 [bp] 586 [Protein] 77aa [Translation ID] ENSP00000414536 [CCDS] - [UniProt] F8WDY6 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-014 [Transcript ID] ENST00000509459 [bp] 526 [Protein] 27aa [Translation ID] ENSP00000487998 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-005 [Transcript ID] ENST00000433026 [bp] 615 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-003 [Transcript ID] ENST00000479989 [bp] 576 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-012 [Transcript ID] ENST00000511266 [bp] 509 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-010 [Transcript ID] ENST00000497231 [bp] 2038 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-008 [Transcript ID] ENST00000485852 [bp] 593 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
cae395d9__ALDH7A1_008__ENST00000485852___Biotype
|
[Name] ALDH7A1-009 [Transcript ID] ENST00000476328 [bp] 484 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-008 (ENST00000485852)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:126544739-126550164;t=ENST00000485852
|
46/1438042988922.24_20150728002308-00161-ip-10-236-191-2_420549835_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
df6e57d5_t__PARK7_002__ENST00000338639___Flags
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
430d7728_pt__GLRX_001__ENST00000237858___Flags
|
[Name] GLRX-002 [Transcript ID] ENST00000379979 [bp] 1366 [Protein] 106aa [Translation ID] ENSP00000369314 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] NM_001243658 NM_002064 NP_001230587 NP_002055 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
430d7728_pt__GLRX_001__ENST00000237858___Flags
|
[Name] GLRX-001 [Transcript ID] ENST00000237858 [bp] 1211 [Protein] 106aa [Translation ID] ENSP00000237858 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] NM_001118890 NM_001243659 NP_001112362 NP_001230588 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
430d7728_pt__GLRX_001__ENST00000237858___Flags
|
[Name] GLRX-004 [Transcript ID] ENST00000505427 [bp] 632 [Protein] 106aa [Translation ID] ENSP00000427353 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
430d7728_pt__GLRX_001__ENST00000237858___Flags
|
[Name] GLRX-007 [Transcript ID] ENST00000508780 [bp] 533 [Protein] 106aa [Translation ID] ENSP00000422708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
430d7728_pt__GLRX_001__ENST00000237858___Flags
|
[Name] GLRX-005 [Transcript ID] ENST00000512469 [bp] 473 [Protein] 106aa [Translation ID] ENSP00000424636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
430d7728_pt__GLRX_001__ENST00000237858___Flags
|
[Name] GLRX-006 [Transcript ID] ENST00000507605 [bp] 1734 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
430d7728_pt__GLRX_001__ENST00000237858___Flags
|
[Name] GLRX-003 [Transcript ID] ENST00000507412 [bp] 3407 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-001 [Transcript ID] ENST00000463745 [bp] 4231 [Protein] 186aa [Translation ID] ENSP00000419619 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2928 [UniProt] Q9H0F7 [RefSeq] NM_001278293 NP_001265222 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-201 [Transcript ID] ENST00000335979 [bp] 1630 [Protein] 186aa [Translation ID] ENSP00000337722 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2928 [UniProt] Q9H0F7 [RefSeq] NM_032146 NP_115522 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-202 [Transcript ID] ENST00000394206 [bp] 1590 [Protein] 186aa [Translation ID] ENSP00000377756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2928 [UniProt] Q9H0F7 [RefSeq] NM_177976 NP_816931 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-004 [Transcript ID] ENST00000462412 [bp] 894 [Protein] 121aa [Translation ID] ENSP00000418740 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9IZ13 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-006 [Transcript ID] ENST00000476753 [bp] 675 [Protein] 54aa [Translation ID] ENSP00000419934 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C5H6 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-007 [Transcript ID] ENST00000631834 [bp] 557 [Protein] 147aa [Translation ID] ENSP00000488530 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-002 [Transcript ID] ENST00000493990 [bp] 1705 [Protein] 186aa [Translation ID] ENSP00000418057 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] CCDS2928 [UniProt] Q9H0F7 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-003 [Transcript ID] ENST00000496713 [bp] 851 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
bcf9f8a2_pt__ARL6_201__ENST00000335979___Flags
|
[Name] ARL6-005 [Transcript ID] ENST00000494363 [bp] 553 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ARL6-201 (ENST00000335979)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000113966;r=3:97764521-97798535;t=ENST00000335979
|
46/1438042988922.24_20150728002308-00009-ip-10-236-191-2_424461385_0.json
|
d1a77916_t__FANCA_003__ENST00000389302___Flags
|
[Name] FANCA-001 [Transcript ID] ENST00000389301 [bp] 5451 [Protein] 1455aa [Translation ID] ENSP00000373952 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS32515 [UniProt] O15360 [RefSeq] NM_000135 NP_000126 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
d1a77916_t__FANCA_003__ENST00000389302___Flags
|
[Name] FANCA-002 [Transcript ID] ENST00000568369 [bp] 4601 [Protein] 1424aa [Translation ID] ENSP00000456829 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS67099 [UniProt] O15360 [RefSeq] NM_001286167 NP_001273096 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
d1a77916_t__FANCA_003__ENST00000389302___Flags
|
[Name] FANCA-003 [Transcript ID] ENST00000389302 [bp] 1641 [Protein] 297aa [Translation ID] ENSP00000373953 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS42221 [UniProt] O15360 [RefSeq] NM_001018112 NP_001018122 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
d1a77916_t__FANCA_003__ENST00000389302___Flags
|
[Name] FANCA-006 [Transcript ID] ENST00000563673 [bp] 1694 [Protein] 316aa [Translation ID] ENSP00000456443 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BRX3 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FANCA-003 (ENST00000389302)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000187741;r=16:89798374-89816657;t=ENST00000389302
|
46/1438042988922.24_20150728002308-00328-ip-10-236-191-2_440873882_0.json
|
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