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a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-004 [Transcript ID] ENST00000355572 [bp] 977 [Protein] 222aa [Translation ID] ENSP00000347776 [CCDS] CCDS4424 [UniProt] Q9NR12 [RefSeq] NM_213636 NP_998801 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-007 [Transcript ID] ENST00000393551 [bp] 1226 [Protein] 287aa [Translation ID] ENSP00000377182 [CCDS] - [UniProt] Q9NR12 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-015 [Transcript ID] ENST00000505074 [bp] 931 [Protein] 287aa [Translation ID] ENSP00000426213 [CCDS] - [UniProt] D6RH06 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-009 [Transcript ID] ENST00000506161 [bp] 759 [Protein] 173aa [Translation ID] ENSP00000424850 [CCDS] - [UniProt] D6RF83 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-012 [Transcript ID] ENST00000393546 [bp] 671 [Protein] 195aa [Translation ID] ENSP00000377177 [CCDS] - [UniProt] H7BYK4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-010 [Transcript ID] ENST00000506537 [bp] 636 [Protein] 90aa [Translation ID] ENSP00000421664 [CCDS] - [UniProt] D6RAN1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-006 [Transcript ID] ENST00000486828 [bp] 1904 [Protein] 191aa [Translation ID] ENSP00000439157 [CCDS] - [UniProt] Q9NR12 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-002 [Transcript ID] ENST00000493815 [bp] 1686 [Protein] 153aa [Translation ID] ENSP00000431236 [CCDS] - [UniProt] Q9NR12 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-013 [Transcript ID] ENST00000503827 [bp] 451 [Protein] 120aa [Translation ID] ENSP00000422363 [CCDS] - [UniProt] H0Y8W6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-016 [Transcript ID] ENST00000505746 [bp] 405 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-008 [Transcript ID] ENST00000463411 [bp] 1015 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-011 [Transcript ID] ENST00000503346 [bp] 669 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-014 [Transcript ID] ENST00000504318 [bp] 597 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-017 [Transcript ID] ENST00000504380 [bp] 556 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-202 [Transcript ID] ENST00000539050 [bp] 2024 [Protein] 420aa [Translation ID] ENSP00000442343 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73166 [UniProt] B7Z1F5 [RefSeq] NM_001198855 NP_001185784 [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-203 [Transcript ID] ENST00000623108 [bp] 1962 [Protein] 420aa [Translation ID] ENSP00000485110 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73166 [UniProt] B7Z1F5 [RefSeq] NM_001198853 NP_001185782 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-001 [Transcript ID] ENST00000371270 [bp] 1923 [Protein] 490aa [Translation ID] ENSP00000360317 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7438 [UniProt] P10632 [RefSeq] NM_000770 NP_000761 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-201 [Transcript ID] ENST00000535898 [bp] 1799 [Protein] 388aa [Translation ID] ENSP00000445062 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55721 [UniProt] P10632 [RefSeq] NM_001198854 NP_001185783 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-204 [Transcript ID] ENST00000628935 [bp] 924 [Protein] 307aa [Translation ID] ENSP00000487145 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-008 [Transcript ID] ENST00000490994 [bp] 1961 [Protein] 83aa [Translation ID] ENSP00000433314 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PLI9 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-003 [Transcript ID] ENST00000527420 [bp] 1868 [Protein] 393aa [Translation ID] ENSP00000433191 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] G3V188 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-007 [Transcript ID] ENST00000525991 [bp] 1587 [Protein] 99aa [Translation ID] ENSP00000433842 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PIW6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-006 [Transcript ID] ENST00000527953 [bp] 2117 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-005 [Transcript ID] ENST00000526814 [bp] 2078 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-004 [Transcript ID] ENST00000533320 [bp] 2033 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-002 [Transcript ID] ENST00000479946 [bp] 1572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
f0e8f09b_Gene__CYP2C8__ENSG00000138115___Flags
|
[Name] CYP2C8-011 [Transcript ID] ENST00000531714 [bp] 607 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Gene: CYP2C8 (ENSG00000138115)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000138115;r=10:95036772-95069497
|
46/1438042988922.24_20150728002308-00053-ip-10-236-191-2_429583527_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-002 [Transcript ID] ENST00000341458 [bp] 2498 [Protein] 427aa [Translation ID] ENSP00000340608 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13320 [UniProt] Q9HBY8 [RefSeq] NM_016276 NP_057360 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-005 [Transcript ID] ENST00000373100 [bp] 2225 [Protein] 367aa [Translation ID] ENSP00000362192 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13321 [UniProt] Q9HBY8 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-201 [Transcript ID] ENST00000423407 [bp] 1915 [Protein] 367aa [Translation ID] ENSP00000392795 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13321 [UniProt] Q9HBY8 [RefSeq] NM_001199264 NP_001186193 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-001 [Transcript ID] ENST00000373092 [bp] 1906 [Protein] 367aa [Translation ID] ENSP00000362184 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13321 [UniProt] Q9HBY8 [RefSeq] NM_170693 NP_733794 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-011 [Transcript ID] ENST00000426287 [bp] 1182 [Protein] 393aa [Translation ID] ENSP00000412214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9HBY8 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-007 [Transcript ID] ENST00000412111 [bp] 676 [Protein] 198aa [Translation ID] ENSP00000396222 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5H8Y5 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-009 [Transcript ID] ENST00000617268 [bp] 554 [Protein] 10aa [Translation ID] ENSP00000481432 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-004 [Transcript ID] ENST00000496343 [bp] 2395 [Protein] 285aa [Translation ID] ENSP00000436841 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F2Z3C8 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-010 [Transcript ID] ENST00000373077 [bp] 1736 [Protein] 358aa [Translation ID] ENSP00000362168 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] X6R8H3 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-003 [Transcript ID] ENST00000485914 [bp] 428 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
6b508cf5___Gene__SGK2__ENSG00000101049___Flags
|
[Name] SGK2-008 [Transcript ID] ENST00000617358 [bp] 612 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: SGK2 (ENSG00000101049)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000101049;r=20:43558968-43588237
|
46/1438042986444.39_20150728002306-00204-ip-10-236-191-2_422884138_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-001 [Transcript ID] ENST00000264808 [bp] 5330 [Protein] 630aa [Translation ID] ENSP00000264808 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3716 [UniProt] Q9NQX1 [RefSeq] NM_018699 NP_061169 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-006 [Transcript ID] ENST00000428209 [bp] 2338 [Protein] 599aa [Translation ID] ENSP00000404832 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75188 [UniProt] Q9NQX1 [RefSeq] NM_001300823 NP_001287752 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-005 [Transcript ID] ENST00000515109 [bp] 2259 [Protein] 501aa [Translation ID] ENSP00000422309 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75187 [UniProt] Q9NQX1 [RefSeq] NM_001300824 NP_001287753 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-002 [Transcript ID] ENST00000394435 [bp] 2492 [Protein] 111aa [Translation ID] ENSP00000377955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9NQX1 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-009 [Transcript ID] ENST00000502409 [bp] 1044 [Protein] 145aa [Translation ID] ENSP00000424861 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0Y9S1 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-011 [Transcript ID] ENST00000506065 [bp] 696 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-007 [Transcript ID] ENST00000505033 [bp] 576 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-012 [Transcript ID] ENST00000513741 [bp] 210 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
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Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-004 [Transcript ID] ENST00000505484 [bp] 2396 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-003 [Transcript ID] ENST00000512845 [bp] 1249 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-010 [Transcript ID] ENST00000503661 [bp] 847 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
464f076e__Gene__PRDM5__ENSG00000138738___Flags
|
[Name] PRDM5-008 [Transcript ID] ENST00000507611 [bp] 535 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PRDM5 (ENSG00000138738)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000138738;r=4:120684919-120922870
|
46/1438042988922.24_20150728002308-00187-ip-10-236-191-2_441248434_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
92d2cded_t__PDPK1_015__ENST00000566659___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
8ecea499__Gene__PARK7__ENSG00000116288___Biotype
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
d84fb895_pt__GLRX_001__ENST00000237858___Biotype
|
[Name] GLRX-002 [Transcript ID] ENST00000379979 [bp] 1366 [Protein] 106aa [Translation ID] ENSP00000369314 [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] NM_001243658 NM_002064 NP_001230587 NP_002055 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
d84fb895_pt__GLRX_001__ENST00000237858___Biotype
|
[Name] GLRX-001 [Transcript ID] ENST00000237858 [bp] 1211 [Protein] 106aa [Translation ID] ENSP00000237858 [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] NM_001118890 NM_001243659 NP_001112362 NP_001230588 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
d84fb895_pt__GLRX_001__ENST00000237858___Biotype
|
[Name] GLRX-004 [Transcript ID] ENST00000505427 [bp] 632 [Protein] 106aa [Translation ID] ENSP00000427353 [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
d84fb895_pt__GLRX_001__ENST00000237858___Biotype
|
[Name] GLRX-007 [Transcript ID] ENST00000508780 [bp] 533 [Protein] 106aa [Translation ID] ENSP00000422708 [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
d84fb895_pt__GLRX_001__ENST00000237858___Biotype
|
[Name] GLRX-005 [Transcript ID] ENST00000512469 [bp] 473 [Protein] 106aa [Translation ID] ENSP00000424636 [CCDS] CCDS4078 [UniProt] A0A024RAM2 P35754 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
d84fb895_pt__GLRX_001__ENST00000237858___Biotype
|
[Name] GLRX-006 [Transcript ID] ENST00000507605 [bp] 1734 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
d84fb895_pt__GLRX_001__ENST00000237858___Biotype
|
[Name] GLRX-003 [Transcript ID] ENST00000507412 [bp] 3407 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: GLRX-001 (ENST00000237858)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000173221;r=5:95813849-95823005;t=ENST00000237858
|
46/1438042988922.24_20150728002308-00241-ip-10-236-191-2_437244967_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-006 [Transcript ID] ENST00000005226 [bp] 2700 [Protein] 899aa [Translation ID] ENSP00000005226 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7825 [UniProt] Q9Y6N9 [RefSeq] NM_153676 NP_710142 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-001 [Transcript ID] ENST00000318024 [bp] 2237 [Protein] 552aa [Translation ID] ENSP00000317018 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31438 [UniProt] Q9Y6N9 [RefSeq] NM_005709 NP_005700 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-003 [Transcript ID] ENST00000527020 [bp] 2159 [Protein] 533aa [Translation ID] ENSP00000436934 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73265 [UniProt] Q9Y6N9 [RefSeq] NM_001297764 NP_001284693 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-005 [Transcript ID] ENST00000527720 [bp] 2278 [Protein] 521aa [Translation ID] ENSP00000432944 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9Y6N9 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-008 [Transcript ID] ENST00000526181 [bp] 1040 [Protein] 318aa [Translation ID] ENSP00000437128 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-002 [Transcript ID] ENST00000526313 [bp] 2149 [Protein] 403aa [Translation ID] ENSP00000432236 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q9Y6N9 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-009 [Transcript ID] ENST00000529563 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-011 [Transcript ID] ENST00000530700 [bp] 403 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-010 [Transcript ID] ENST00000527551 [bp] 371 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-012 [Transcript ID] ENST00000534556 [bp] 244 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
391bb5c3_t__USH1C_008__ENST00000526181___Flags
|
[Name] USH1C-007 [Transcript ID] ENST00000624811 [bp] 1194 [Protein] No protein [Translation ID] - [Biotype] TEC [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
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