task
stringlengths 42
48
| input
stringlengths 40
1.07k
| output
stringlengths 1
769
| options
list | pageTitle
stringlengths 20
107
| outputColName
stringclasses 9
values | url
stringlengths 64
176
| wdcFile
stringlengths 71
74
|
|---|---|---|---|---|---|---|---|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
3da28116__Gene__PARK7__ENSG00000116288___Flags
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Marked-up sequence - Gene: PARK7 (ENSG00000116288)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Sequence?g=ENSG00000116288;r=1:7954291-7985505
|
46/1438042986444.39_20150728002306-00055-ip-10-236-191-2_427251251_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-020 [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-014 [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-007 [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-013 [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-010 [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-009 [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
60034a30_t__CPT1B_013__ENST00000475238___Biotype
|
[Name] CPT1B-011 [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
1eab87ff_t__PDPK1_007__ENST00000492021___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-007 (ENST00000492021)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587965-2653189;t=ENST00000492021
|
46/1438042988922.24_20150728002308-00326-ip-10-236-191-2_430457314_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000005226 [bp] 2700 [Protein] 899aa [Translation ID] ENSP00000005226 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7825 [UniProt] Q9Y6N9 [RefSeq] NM_153676 NP_710142 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Name]
|
USH1C-006
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000318024 [bp] 2237 [Protein] 552aa [Translation ID] ENSP00000317018 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS31438 [UniProt] Q9Y6N9 [RefSeq] NM_005709 NP_005700 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name]
|
USH1C-001
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000527020 [bp] 2159 [Protein] 533aa [Translation ID] ENSP00000436934 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73265 [UniProt] Q9Y6N9 [RefSeq] NM_001297764 NP_001284693 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
USH1C-003
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000527720 [bp] 2278 [Protein] 521aa [Translation ID] ENSP00000432944 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9Y6N9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
|
USH1C-005
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000526181 [bp] 1040 [Protein] 318aa [Translation ID] ENSP00000437128 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
|
USH1C-008
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000526313 [bp] 2149 [Protein] 403aa [Translation ID] ENSP00000432236 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q9Y6N9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name]
|
USH1C-002
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000529563 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
USH1C-009
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000530700 [bp] 403 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
USH1C-011
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000527551 [bp] 371 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
|
USH1C-010
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000534556 [bp] 244 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
|
USH1C-012
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
103bb66f_t__USH1C_008__ENST00000526181___Name
|
[Transcript ID] ENST00000624811 [bp] 1194 [Protein] No protein [Translation ID] - [Biotype] TEC [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name]
|
USH1C-007
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: USH1C-008 (ENST00000526181)
|
Name
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000006611;r=11:17522883-17533874;t=ENST00000526181
|
46/1438042989331.34_20150728002309-00083-ip-10-236-191-2_416309687_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-020 [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-014 [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-007 [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-013 [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-010 [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-009 [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
734d41ae_t__CPT1B_013__ENST00000475238___Flags
|
[Name] CPT1B-011 [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: CPT1B-013 (ENST00000475238)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000475238
|
46/1438042988922.24_20150728002308-00212-ip-10-236-191-2_431485296_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d17c4a85__Gene__PDPK1__ENSG00000140992___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
85f8e5ab__Gene__PDPK1__ENSG00000140992___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Variation table - Gene: PDPK1 (ENSG00000140992)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Table?db=core;g=ENSG00000140992;r=16:2538021-2562227;t=ENST00000570136
|
46/1438042988922.24_20150728002308-00160-ip-10-236-191-2_443460280_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
d82f3549_t__PDPK1_017__ENST00000561962___Biotype
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.