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2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
2fc02519_t__PDPK1_015__ENST00000566659___Biotype
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDPK1-015 (ENST00000566659)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000140992;r=16:2607445-2611880;t=ENST00000566659
|
46/1438042988922.24_20150728002308-00051-ip-10-236-191-2_433677289_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-204 [Transcript ID] ENST00000624204 [bp] 3417 [Protein] 756aa [Translation ID] ENSP00000485312 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS74615 [UniProt] B7ZAA0 [RefSeq] NM_001289408 NP_001276337 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-202 [Transcript ID] ENST00000432292 [bp] 3234 [Protein] 756aa [Translation ID] ENSP00000398378 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS74615 [UniProt] B7ZAA0 [RefSeq] NM_001289409 NP_001276338 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-001 [Transcript ID] ENST00000441310 [bp] 3225 [Protein] 932aa [Translation ID] ENSP00000406490 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2302 [UniProt] P54277 [RefSeq] NM_000534 NP_000525 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-003 [Transcript ID] ENST00000409823 [bp] 2795 [Protein] 893aa [Translation ID] ENSP00000387125 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46474 [UniProt] P54277 [RefSeq] NM_001128143 NP_001121615 [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-010 [Transcript ID] ENST00000447232 [bp] 2576 [Protein] 770aa [Translation ID] ENSP00000401064 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46473 [UniProt] P54277 [RefSeq] NM_001128144 NP_001121616 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-201 [Transcript ID] ENST00000418224 [bp] 3018 [Protein] 667aa [Translation ID] ENSP00000404492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5FBZ9 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-006 [Transcript ID] ENST00000424307 [bp] 2153 [Protein] 711aa [Translation ID] ENSP00000389938 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PC65 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-004 [Transcript ID] ENST00000409985 [bp] 1882 [Protein] 181aa [Translation ID] ENSP00000386623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PC40 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-011 [Transcript ID] ENST00000409593 [bp] 1668 [Protein] 555aa [Translation ID] ENSP00000387169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P54277 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-203 [Transcript ID] ENST00000618056 [bp] 1468 [Protein] 248aa [Translation ID] ENSP00000480632 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5FBZ4 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-007 [Transcript ID] ENST00000374826 [bp] 948 [Protein] 165aa [Translation ID] ENSP00000363959 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5XG96 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-016 [Transcript ID] ENST00000452382 [bp] 881 [Protein] 266aa [Translation ID] ENSP00000396232 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PH88 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-014 [Transcript ID] ENST00000424766 [bp] 831 [Protein] 194aa [Translation ID] ENSP00000410082 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JF76 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-013 [Transcript ID] ENST00000446877 [bp] 560 [Protein] 44aa [Translation ID] ENSP00000413837 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JKP0 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-015 [Transcript ID] ENST00000420421 [bp] 331 [Protein] 73aa [Translation ID] ENSP00000391136 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J4L1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-005 [Transcript ID] ENST00000342075 [bp] 3012 [Protein] 108aa [Translation ID] ENSP00000343888 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8W8L1 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-002 [Transcript ID] ENST00000450931 [bp] 2817 [Protein] 659aa [Translation ID] ENSP00000406225 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q3BDU3 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-008 [Transcript ID] ENST00000447734 [bp] 570 [Protein] 47aa [Translation ID] ENSP00000411151 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q5FBZ7 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-012 [Transcript ID] ENST00000421722 [bp] 2285 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-009 [Transcript ID] ENST00000424059 [bp] 2004 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
1e5e5968_pt__PMS1_004__ENST00000409985___Flags
|
[Name] PMS1-017 [Transcript ID] ENST00000483293 [bp] 663 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PMS1-004 (ENST00000409985)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000064933;r=2:189784450-189807054;t=ENST00000409985
|
46/1438042988922.24_20150728002308-00006-ip-10-236-191-2_426938530_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-001 [Transcript ID] ENST00000404648 [bp] 1760 [Protein] 437aa [Translation ID] ENSP00000384860 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47153 [UniProt] P02679 [RefSeq] NM_000509 NP_000500 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-002 [Transcript ID] ENST00000336098 [bp] 1659 [Protein] 453aa [Translation ID] ENSP00000336829 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3788 [UniProt] P02679 [RefSeq] NM_021870 NP_068656 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-007 [Transcript ID] ENST00000407946 [bp] 1636 [Protein] 461aa [Translation ID] ENSP00000384552 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JC84 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-006 [Transcript ID] ENST00000405164 [bp] 1539 [Protein] 445aa [Translation ID] ENSP00000384101 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JEU5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-008 [Transcript ID] ENST00000443553 [bp] 789 [Protein] 123aa [Translation ID] ENSP00000407562 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JU00 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-009 [Transcript ID] ENST00000393846 [bp] 641 [Protein] 119aa [Translation ID] ENSP00000377429 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JPQ9 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-004 [Transcript ID] ENST00000492082 [bp] 2031 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-003 [Transcript ID] ENST00000465913 [bp] 1573 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-011 [Transcript ID] ENST00000473393 [bp] 996 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-010 [Transcript ID] ENST00000465336 [bp] 722 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-012 [Transcript ID] ENST00000464532 [bp] 703 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
686c560f_ipt__FGG_009__ENST00000393846___Flags
|
[Name] FGG-005 [Transcript ID] ENST00000484695 [bp] 354 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: FGG-009 (ENST00000393846)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000171557;r=4:154609630-154612797;t=ENST00000393846
|
46/1438042989331.34_20150728002309-00188-ip-10-236-191-2_420671016_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-004 [Transcript ID] ENST00000408937 [bp] 6443 [Protein] 740aa [Translation ID] ENSP00000386200 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43635 [UniProt] O15409 X5D2H2 [RefSeq] NM_148898 NP_683696 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-202 [Transcript ID] ENST00000403559 [bp] 6415 [Protein] 732aa [Translation ID] ENSP00000385069 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55154 [UniProt] O15409 [RefSeq] NM_148900 NP_683698 [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-014 [Transcript ID] ENST00000393494 [bp] 2664 [Protein] 715aa [Translation ID] ENSP00000377132 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5760 [UniProt] O15409 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-001 [Transcript ID] ENST00000350908 [bp] 2638 [Protein] 715aa [Translation ID] ENSP00000265436 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5760 [UniProt] O15409 [RefSeq] NM_001172766 NM_014491 NP_001166237 NP_055306 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-017 [Transcript ID] ENST00000360232 [bp] 1412 [Protein] 432aa [Translation ID] ENSP00000353367 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5761 [UniProt] O15409 [RefSeq] NM_148899 NP_683697 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-201 [Transcript ID] ENST00000393491 [bp] 6085 [Protein] 530aa [Translation ID] ENSP00000377130 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q0PRL4 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-005 [Transcript ID] ENST00000393498 [bp] 2617 [Protein] 694aa [Translation ID] ENSP00000377135 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A8MUV4 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-020 [Transcript ID] ENST00000393489 [bp] 2285 [Protein] 623aa [Translation ID] ENSP00000377129 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A024R752 O15409 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-010 [Transcript ID] ENST00000378237 [bp] 2187 [Protein] 365aa [Translation ID] ENSP00000367482 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] O15409 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-016 [Transcript ID] ENST00000390668 [bp] 1472 [Protein] 456aa [Translation ID] ENSP00000375084 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q8N6B5 [RefSeq] NM_001172767 NP_001166238 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-007 [Transcript ID] ENST00000462331 [bp] 1388 [Protein] 67aa [Translation ID] ENSP00000418100 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q75MZ5 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-018 [Transcript ID] ENST00000393495 [bp] 772 [Protein] 171aa [Translation ID] ENSP00000377133 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A8MTU2 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-015 [Transcript ID] ENST00000452963 [bp] 625 [Protein] 205aa [Translation ID] ENSP00000409826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JQP8 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-008 [Transcript ID] ENST00000441290 [bp] 8301 [Protein] 87aa [Translation ID] ENSP00000416825 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] O15409 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-006 [Transcript ID] ENST00000412402 [bp] 3495 [Protein] 87aa [Translation ID] ENSP00000405470 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] O15409 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-002 [Transcript ID] ENST00000440349 [bp] 1509 [Protein] 82aa [Translation ID] ENSP00000395552 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WDL6 [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-009 [Transcript ID] ENST00000459666 [bp] 927 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1c2f0b06_t__FOXP2_202__ENST00000403559___Flags
|
[Name] FOXP2-011 [Transcript ID] ENST00000495516 [bp] 350 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOXP2-202 (ENST00000403559)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000128573;r=16:2588165-2647929;t=ENST00000403559
|
46/1438042988922.24_20150728002308-00300-ip-10-236-191-2_436684735_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
|
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
1f8a6b67_t__PDPK1_017__ENST00000561962___Flags
|
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000561962
|
46/1438042989331.34_20150728002309-00050-ip-10-236-191-2_429113900_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags]
|
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags]
|
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags]
|
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
c2b1b7ca_t__UCHL1_012__ENST00000512788___Flags
|
[Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
|
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
|
[] |
Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-012 (ENST00000512788)
|
Flags
|
http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000512788
|
46/1438042988922.24_20150728002308-00010-ip-10-236-191-2_437469403_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
551592ca_t__PARK7_002__ENST00000338639___Biotype
|
[Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
|
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
|
[] |
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PARK7-002 (ENST00000338639)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000116288;r=1:8021723-8045339;t=ENST00000338639
|
46/1438042988922.24_20150728002308-00094-ip-10-236-191-2_420616126_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-001 [Transcript ID] ENST00000355841 [bp] 1689 [Protein] 457aa [Translation ID] ENSP00000348099 [CCDS] CCDS4422 [UniProt] Q9NR12 [RefSeq] NM_005451 NP_005442 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
a6e460dd_Gene__PDLIM7__ENSG00000196923___Biotype
|
[Name] PDLIM7-003 [Transcript ID] ENST00000359895 [bp] 1567 [Protein] 423aa [Translation ID] ENSP00000352964 [CCDS] CCDS4423 [UniProt] Q9NR12 [RefSeq] NM_203352 NP_976227 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
|
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
|
[] |
Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PDLIM7 (ENSG00000196923)
|
Biotype
|
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000196923;r=5:177483394-177497606
|
46/1438042986444.39_20150728002306-00304-ip-10-236-191-2_439506610_0.json
|
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