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f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
f2d3d9e9_t__PDPK1_006__ENST00000474706___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706 | 27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json |
26460f68_ne__Mecp2__ENSMUSG00000031393___Flags | [Name] Mecp2-001 [Transcript ID] ENSMUST00000100750 [bp] 10538 [Protein] 484aa [Translation ID] ENSMUSP00000098314 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS41017 [UniProt] Q9Z2D6 [RefSeq] NM_010788 NP_034918 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mecp2 (ENSMUSG00000031393) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031393;r=X:74026592-74135363 | 27/1438042988051.33_20150728002308-00056-ip-10-236-191-2_432614455_0.json |
26460f68_ne__Mecp2__ENSMUSG00000031393___Flags | [Name] Mecp2-201 [Transcript ID] ENSMUST00000170481 [bp] 10175 [Protein] 484aa [Translation ID] ENSMUSP00000127115 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS41017 [UniProt] Q9Z2D6 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mecp2 (ENSMUSG00000031393) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031393;r=X:74026592-74135363 | 27/1438042988051.33_20150728002308-00056-ip-10-236-191-2_432614455_0.json |
26460f68_ne__Mecp2__ENSMUSG00000031393___Flags | [Name] Mecp2-002 [Transcript ID] ENSMUST00000033770 [bp] 1739 [Protein] 501aa [Translation ID] ENSMUSP00000033770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS41016 [UniProt] Q9Z2D6 [RefSeq] NM_001081979 NP_001075448 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mecp2 (ENSMUSG00000031393) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031393;r=X:74026592-74135363 | 27/1438042988051.33_20150728002308-00056-ip-10-236-191-2_432614455_0.json |
26460f68_ne__Mecp2__ENSMUSG00000031393___Flags | [Name] Mecp2-003 [Transcript ID] ENSMUST00000123362 [bp] 1675 [Protein] 172aa [Translation ID] ENSMUSP00000118842 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YY81 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mecp2 (ENSMUSG00000031393) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031393;r=X:74026592-74135363 | 27/1438042988051.33_20150728002308-00056-ip-10-236-191-2_432614455_0.json |
26460f68_ne__Mecp2__ENSMUSG00000031393___Flags | [Name] Mecp2-004 [Transcript ID] ENSMUST00000140399 [bp] 1168 [Protein] 189aa [Translation ID] ENSMUSP00000119947 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3Z7U4 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mecp2 (ENSMUSG00000031393) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031393;r=X:74026592-74135363 | 27/1438042988051.33_20150728002308-00056-ip-10-236-191-2_432614455_0.json |
26460f68_ne__Mecp2__ENSMUSG00000031393___Flags | [Name] Mecp2-005 [Transcript ID] ENSMUST00000198358 [bp] 4563 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Mecp2 (ENSMUSG00000031393) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000031393;r=X:74026592-74135363 | 27/1438042988051.33_20150728002308-00056-ip-10-236-191-2_432614455_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
091a3f12_t__UCHL1_001__ENST00000284440___Biotype | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
f26a82b9_t__PARK7_002__ENST00000338639___Biotype | [Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-005 [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-007 [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-004 [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
d7720e65___PRKACA_008__ENST00000589284___Flags | [Name] PRKACA-009 [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
03d197e0__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [UniProt] Q06609 [RefSeq] NM_002875 NP_002866 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [UniProt] Q06609 [RefSeq] NM_001164270 NP_001157742 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_001164269 NP_001157741 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_133487 NP_597994 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
2c310264_t__RAD51_002__ENST00000423169___Flags | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-020 [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-014 [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-007 [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-013 [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-010 [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-009 [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
a2e8369e_t__CPT1B_020__ENST00000423069___Flags | [Name] CPT1B-011 [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-001 [Transcript ID] ENST00000264932 [bp] 2390 [Protein] 664aa [Translation ID] ENSP00000264932 [CCDS] CCDS3853 [UniProt] A0A024QZ30 P31040 [RefSeq] NM_004168 NP_004159 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-004 [Transcript ID] ENST00000510361 [bp] 2148 [Protein] 616aa [Translation ID] ENSP00000427703 [CCDS] CCDS77992 [UniProt] P31040 [RefSeq] NM_001294332 NP_001281261 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-002 [Transcript ID] ENST00000504309 [bp] 2067 [Protein] 583aa [Translation ID] ENSP00000426514 [CCDS] - [UniProt] D6RFM5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-201 [Transcript ID] ENST00000617470 [bp] 1952 [Protein] 519aa [Translation ID] ENSP00000484230 [CCDS] - [UniProt] A0A087X1I3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-017 [Transcript ID] ENST00000515815 [bp] 704 [Protein] 126aa [Translation ID] ENSP00000422404 [CCDS] - [UniProt] H0Y8X1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-018 [Transcript ID] ENST00000509564 [bp] 630 [Protein] 101aa [Translation ID] ENSP00000421911 [CCDS] - [UniProt] H0Y8S2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-010 [Transcript ID] ENST00000509632 [bp] 583 [Protein] 89aa [Translation ID] ENSP00000425077 [CCDS] - [UniProt] D6REB7 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-019 [Transcript ID] ENST00000507522 [bp] 644 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-013 [Transcript ID] ENST00000514233 [bp] 558 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-020 [Transcript ID] ENST00000509082 [bp] 434 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-006 [Transcript ID] ENST00000511810 [bp] 3001 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-005 [Transcript ID] ENST00000503674 [bp] 2426 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-003 [Transcript ID] ENST00000505555 [bp] 2230 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-008 [Transcript ID] ENST00000514027 [bp] 2209 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-007 [Transcript ID] ENST00000515752 [bp] 1809 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-009 [Transcript ID] ENST00000504824 [bp] 1430 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-014 [Transcript ID] ENST00000512962 [bp] 935 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-011 [Transcript ID] ENST00000502379 [bp] 679 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
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