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306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | Q9NZG9 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt] | E9PNT5 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt] | E9PJ30 | [
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306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | E9PI54 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt] | H0YD61 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-001 [Transcript ID] ENST00000521381 [bp] 7011 [Protein] 724aa [Translation ID] ENSP00000428056 [CCDS] CCDS3993 [UniProt] P27986 [RefSeq] NM_181523 NP_852664 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-016 [Transcript ID] ENST00000521657 [bp] 3891 [Protein] 724aa [Translation ID] ENSP00000429277 [CCDS] CCDS3993 [UniProt] P27986 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-002 [Transcript ID] ENST00000320694 [bp] 2625 [Protein] 424aa [Translation ID] ENSP00000323512 [CCDS] CCDS3994 [UniProt] P27986 [RefSeq] NM_181524 NP_852665 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-004 [Transcript ID] ENST00000523872 [bp] 2473 [Protein] 361aa [Translation ID] ENSP00000430098 [CCDS] CCDS56374 [UniProt] P27986 [RefSeq] NM_001242466 NP_001229395 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-003 [Transcript ID] ENST00000336483 [bp] 2439 [Protein] 454aa [Translation ID] ENSP00000338554 [CCDS] CCDS3995 [UniProt] P27986 [RefSeq] NM_181504 NP_852556 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-010 [Transcript ID] ENST00000522084 [bp] 705 [Protein] 102aa [Translation ID] ENSP00000429766 [CCDS] - [UniProt] E5RHI0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-015 [Transcript ID] ENST00000519025 [bp] 567 [Protein] 189aa [Translation ID] ENSP00000429156 [CCDS] - [UniProt] H0YBC2 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-009 [Transcript ID] ENST00000523807 [bp] 552 [Protein] 117aa [Translation ID] ENSP00000430126 [CCDS] - [UniProt] E5RGI8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-011 [Transcript ID] ENST00000521409 [bp] 540 [Protein] 137aa [Translation ID] ENSP00000431058 [CCDS] - [UniProt] E5RJY0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-014 [Transcript ID] ENST00000520675 [bp] 395 [Protein] 132aa [Translation ID] ENSP00000428566 [CCDS] - [UniProt] H0YB27 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-012 [Transcript ID] ENST00000517698 [bp] 945 [Protein] 38aa [Translation ID] ENSP00000430424 [CCDS] - [UniProt] E5RK66 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-007 [Transcript ID] ENST00000517643 [bp] 586 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-005 [Transcript ID] ENST00000518813 [bp] 3722 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-006 [Transcript ID] ENST00000520550 [bp] 1468 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-008 [Transcript ID] ENST00000517412 [bp] 865 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5f5e3c95___PIK3R1_013__ENST00000518292___Biotype | [Name] PIK3R1-013 [Transcript ID] ENST00000518292 [bp] 558 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | PRKACA-001 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-003 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-002 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | PRKACA-006 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-010 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | PRKACA-008 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-005 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name] | PRKACA-007 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-004 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
29238517___PRKACA_008__ENST00000589284___Name | [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-009 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-008 (ENST00000589284) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14102901-14118084;t=ENST00000589284 | 27/1438042990112.92_20150728002310-00102-ip-10-236-191-2_430720033_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-004 [Transcript ID] ENST00000421587 [bp] 8204 [Protein] 897aa [Translation ID] ENSP00000400526 [CCDS] CCDS48094 [UniProt] O14936 [RefSeq] NM_001126055 NP_001119527 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-005 [Transcript ID] ENST00000378166 [bp] 3123 [Protein] 921aa [Translation ID] ENSP00000367408 [CCDS] CCDS14257 [UniProt] O14936 [RefSeq] NM_003688 NP_003679 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-013 [Transcript ID] ENST00000442742 [bp] 2800 [Protein] 898aa [Translation ID] ENSP00000398007 [CCDS] CCDS48095 [UniProt] O14936 [RefSeq] NM_001126054 NP_001119526 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-007 [Transcript ID] ENST00000378163 [bp] 4411 [Protein] 926aa [Translation ID] ENSP00000367405 [CCDS] - [UniProt] O14936 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-001 [Transcript ID] ENST00000378158 [bp] 3848 [Protein] 909aa [Translation ID] ENSP00000367400 [CCDS] - [UniProt] O14936 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-002 [Transcript ID] ENST00000378179 [bp] 2809 [Protein] 518aa [Translation ID] ENSP00000367421 [CCDS] - [UniProt] Q5JS72 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-006 [Transcript ID] ENST00000378154 [bp] 2494 [Protein] 590aa [Translation ID] ENSP00000367396 [CCDS] - [UniProt] Q5JS74 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-012 [Transcript ID] ENST00000378168 [bp] 2017 [Protein] 381aa [Translation ID] ENSP00000367410 [CCDS] - [UniProt] Q5JS79 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-003 [Transcript ID] ENST00000472704 [bp] 759 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-010 [Transcript ID] ENST00000486402 [bp] 733 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-009 [Transcript ID] ENST00000477823 [bp] 640 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-008 [Transcript ID] ENST00000468986 [bp] 507 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
23d9e5c5_pt__CASK_011__ENST00000469265___Biotype | [Name] CASK-011 [Transcript ID] ENST00000469265 [bp] 404 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CASK-011 (ENST00000469265) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000147044;r=X:41635728-41665431;t=ENST00000469265 | 27/1438042989826.86_20150728002309-00041-ip-10-236-191-2_436219237_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
9db70adb__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Supporting evidence - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Evidence?g=ENSG00000154277;r=4:41258430-41270472 | 27/1438042989826.86_20150728002309-00285-ip-10-236-191-2_425058479_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-005 [Transcript ID] ENST00000513407 [bp] 2276 [Protein] 164aa [Translation ID] ENSP00000475512 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] NM_001285986 NP_001272915 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-002 [Transcript ID] ENST00000471529 [bp] 1723 [Protein] 164aa [Translation ID] ENSP00000425083 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-202 [Transcript ID] ENST00000620031 [bp] 1578 [Protein] 190aa [Translation ID] ENSP00000484778 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] NM_001173531 NM_001285987 NM_203289 NP_001167002 NP_001272916 NP_976034 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-001 [Transcript ID] ENST00000259915 [bp] 1420 [Protein] 360aa [Translation ID] ENSP00000259915 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34391 [UniProt] D2IYK3 Q01860 [RefSeq] NM_002701 NP_002692 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-007 [Transcript ID] ENST00000606567 [bp] 1236 [Protein] 190aa [Translation ID] ENSP00000475880 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-006 [Transcript ID] ENST00000512818 [bp] 1233 [Protein] 164aa [Translation ID] ENSP00000425479 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-004 [Transcript ID] ENST00000441888 [bp] 1055 [Protein] 164aa [Translation ID] ENSP00000389359 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-201 [Transcript ID] ENST00000619340 [bp] 1084 [Protein] 186aa [Translation ID] ENSP00000481679 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WYB7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
d5c4909e___POU5F1_002__ENST00000471529___Flags | [Name] POU5F1-003 [Transcript ID] ENST00000461401 [bp] 791 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: POU5F1-002 (ENST00000471529) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000204531;r=6:31132129-31134615;t=ENST00000471529 | 12/1438042990114.79_20150728002310-00151-ip-10-236-191-2_429120268_0.json |
c1dd77e3___Gene__PAX9__ENSG00000198807___Biotype | [Name] PAX9-001 [Transcript ID] ENST00000361487 [bp] 4514 [Protein] 341aa [Translation ID] ENSP00000355245 [CCDS] CCDS9662 [UniProt] P55771 Q2L4T1 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PAX9 (ENSG00000198807) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000198807;r=14:36657568-36679715 | 12/1438042989891.18_20150728002309-00033-ip-10-236-191-2_414604609_0.json |
c1dd77e3___Gene__PAX9__ENSG00000198807___Biotype | [Name] PAX9-201 [Transcript ID] ENST00000402703 [bp] 3104 [Protein] 341aa [Translation ID] ENSP00000384817 [CCDS] CCDS9662 [UniProt] P55771 Q2L4T1 [RefSeq] NM_006194 NP_006185 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PAX9 (ENSG00000198807) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000198807;r=14:36657568-36679715 | 12/1438042989891.18_20150728002309-00033-ip-10-236-191-2_414604609_0.json |
c1dd77e3___Gene__PAX9__ENSG00000198807___Biotype | [Name] PAX9-002 [Transcript ID] ENST00000554201 [bp] 1289 [Protein] 96aa [Translation ID] ENSP00000450434 [CCDS] - [UniProt] G3V233 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PAX9 (ENSG00000198807) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000198807;r=14:36657568-36679715 | 12/1438042989891.18_20150728002309-00033-ip-10-236-191-2_414604609_0.json |
c1dd77e3___Gene__PAX9__ENSG00000198807___Biotype | [Name] PAX9-003 [Transcript ID] ENST00000557107 [bp] 995 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PAX9 (ENSG00000198807) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000198807;r=14:36657568-36679715 | 12/1438042989891.18_20150728002309-00033-ip-10-236-191-2_414604609_0.json |
c1dd77e3___Gene__PAX9__ENSG00000198807___Biotype | [Name] PAX9-004 [Transcript ID] ENST00000553267 [bp] 645 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PAX9 (ENSG00000198807) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000198807;r=14:36657568-36679715 | 12/1438042989891.18_20150728002309-00033-ip-10-236-191-2_414604609_0.json |
c1dd77e3___Gene__PAX9__ENSG00000198807___Biotype | [Name] PAX9-005 [Transcript ID] ENST00000555639 [bp] 553 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: PAX9 (ENSG00000198807) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000198807;r=14:36657568-36679715 | 12/1438042989891.18_20150728002309-00033-ip-10-236-191-2_414604609_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
083e9e46_t__UCHL1_008__ENST00000510566___Biotype | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
d2434acd__SYNGAP1_010__ENST00000418600___Biotype | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: SYNGAP1-010 (ENST00000418600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000197283;r=6:33387941-33421466;t=ENST00000418600 | 12/1438042990114.79_20150728002310-00092-ip-10-236-191-2_419483839_0.json |
16b9372e_t__UCHL1_008__ENST00000510566___Flags | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
16b9372e_t__UCHL1_008__ENST00000510566___Flags | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
16b9372e_t__UCHL1_008__ENST00000510566___Flags | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
16b9372e_t__UCHL1_008__ENST00000510566___Flags | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
16b9372e_t__UCHL1_008__ENST00000510566___Flags | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Oligo probes - Transcript: UCHL1-008 (ENST00000510566) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Oligos?db=core;g=ENSG00000154277;r=4:41263756-41266482;t=ENST00000510566 | 12/1438042990114.79_20150728002310-00272-ip-10-236-191-2_416185787_0.json |
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