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d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-015 [Transcript ID] ENST00000509420 [bp] 580 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
d4019f37_pt__SDHA_001__ENST00000264932___Biotype | [Name] SDHA-021 [Transcript ID] ENST00000507266 [bp] 432 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SDHA-001 (ENST00000264932) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000073578;r=5:218241-256700;t=ENST00000264932 | 27/1438042989826.86_20150728002309-00134-ip-10-236-191-2_429025473_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-007 [Transcript ID] ENST00000425707 [bp] 3041 [Protein] 365aa [Translation ID] ENSP00000389993 [CCDS] CCDS45671 [UniProt] P10276 [RefSeq] NM_001145302 NP_001138774 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-001 [Transcript ID] ENST00000254066 [bp] 2414 [Protein] 462aa [Translation ID] ENSP00000254066 [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_000964 NP_000955 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-004 [Transcript ID] ENST00000394081 [bp] 2285 [Protein] 457aa [Translation ID] ENSP00000377643 [CCDS] CCDS42317 [UniProt] F1D8N9 P10276 [RefSeq] NM_001024809 NP_001019980 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-002 [Transcript ID] ENST00000394089 [bp] 2024 [Protein] 462aa [Translation ID] ENSP00000377649 [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_001145301 NP_001138773 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-003 [Transcript ID] ENST00000394086 [bp] 2008 [Protein] 478aa [Translation ID] ENSP00000377648 [CCDS] - [UniProt] A8MUP8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-005 [Transcript ID] ENST00000475125 [bp] 813 [Protein] 186aa [Translation ID] ENSP00000462514 [CCDS] - [UniProt] J3KSJ4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-008 [Transcript ID] ENST00000577646 [bp] 733 [Protein] 66aa [Translation ID] ENSP00000464287 [CCDS] - [UniProt] J3QRM2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-006 [Transcript ID] ENST00000420042 [bp] 1052 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-009 [Transcript ID] ENST00000582914 [bp] 581 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
34970c48_pt__RARA_001__ENST00000254066___Biotype | [Name] RARA-010 [Transcript ID] ENST00000579727 [bp] 564 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
ea8b1745_ene__SYNGAP1__ENSG00000197283___Flags | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-003 [Transcript ID] ENST00000377493 [bp] 795 [Protein] 169aa [Translation ID] ENSP00000466242 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ELW0 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-010 [Transcript ID] ENST00000469225 [bp] 711 [Protein] 160aa [Translation ID] ENSP00000466756 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EN27 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-004 [Transcript ID] ENST00000493373 [bp] 624 [Protein] 189aa [Translation ID] ENSP00000465404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q99497 V9HWC2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-009 [Transcript ID] ENST00000497113 [bp] 670 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-008 [Transcript ID] ENST00000465354 [bp] 949 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
56ee75a9_t__PARK7_002__ENST00000338639___Flags | [Name] PARK7-007 [Transcript ID] ENST00000460192 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-201 [Transcript ID] ENST00000340624 [bp] 1311 [Protein] 344aa [Translation ID] ENSP00000345675 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73961 [UniProt] I3L145 [RefSeq] NM_001289113 NP_001276042 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-001 [Transcript ID] ENST00000380450 [bp] 1271 [Protein] 402aa [Translation ID] ENSP00000369816 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11117 [UniProt] P04278 [RefSeq] NM_001040 NM_001289116 NP_001031 NP_001276045 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-009 [Transcript ID] ENST00000575903 [bp] 1196 [Protein] 384aa [Translation ID] ENSP00000458973 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58513 [UniProt] P04278 [RefSeq] NM_001146279 NP_001139751 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-014 [Transcript ID] ENST00000575314 [bp] 1146 [Protein] 344aa [Translation ID] ENSP00000458559 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73961 [UniProt] I3L145 [RefSeq] NM_001289114 NP_001276043 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-002 [Transcript ID] ENST00000416273 [bp] 1042 [Protein] 293aa [Translation ID] ENSP00000388867 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54082 [UniProt] P04278 [RefSeq] NM_001146280 NP_001139752 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-202 [Transcript ID] ENST00000441599 [bp] 973 [Protein] 287aa [Translation ID] ENSP00000393426 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54083 [UniProt] P04278 [RefSeq] NM_001146281 NP_001139753 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-012 [Transcript ID] ENST00000574539 [bp] 938 [Protein] 235aa [Translation ID] ENSP00000458181 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73962 [UniProt] B4DYU0 [RefSeq] NM_001289115 NP_001276044 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-016 [Transcript ID] ENST00000572262 [bp] 984 [Protein] 290aa [Translation ID] ENSP00000459999 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L2X4 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-015 [Transcript ID] ENST00000570547 [bp] 801 [Protein] 229aa [Translation ID] ENSP00000458875 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L1J1 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-005 [Transcript ID] ENST00000576830 [bp] 785 [Protein] 260aa [Translation ID] ENSP00000460219 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0C4DGN2 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-013 [Transcript ID] ENST00000576728 [bp] 776 [Protein] 181aa [Translation ID] ENSP00000459620 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L2F1 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-006 [Transcript ID] ENST00000571153 [bp] 760 [Protein] 212aa [Translation ID] ENSP00000458858 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B0FWH5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-017 [Transcript ID] ENST00000576478 [bp] 639 [Protein] 175aa [Translation ID] ENSP00000461133 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L4B9 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-008 [Transcript ID] ENST00000576152 [bp] 623 [Protein] 206aa [Translation ID] ENSP00000461743 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B0FWH6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-010 [Transcript ID] ENST00000575729 [bp] 526 [Protein] 93aa [Translation ID] ENSP00000458719 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L1C1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-011 [Transcript ID] ENST00000572182 [bp] 479 [Protein] 82aa [Translation ID] ENSP00000458816 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L1G4 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-007 [Transcript ID] ENST00000575618 [bp] 463 [Protein] 113aa [Translation ID] ENSP00000459826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B0FWH7 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-003 [Transcript ID] ENST00000570527 [bp] 1382 [Protein] 57aa [Translation ID] ENSP00000461162 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L4D0 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-004 [Transcript ID] ENST00000570353 [bp] 1158 [Protein] 181aa [Translation ID] ENSP00000458199 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L0M1 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-018 [Transcript ID] ENST00000576747 [bp] 522 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
2a745461___Gene__SHBG__ENSG00000129214___Flags | [Name] SHBG-019 [Transcript ID] ENST00000624152 [bp] 164 [Protein] No protein [Translation ID] - [Biotype] TEC [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: SHBG (ENSG00000129214) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000129214;r=17:7517382-7536700 | 27/1438042989826.86_20150728002309-00252-ip-10-236-191-2_430203814_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-209 [Transcript ID] ENST00000545257 [bp] 4092 [Protein] 476aa [Translation ID] ENSP00000440547 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73196 [UniProt] C6ZRJ7 [RefSeq] NM_001198525 NP_001185454 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-201 [Transcript ID] ENST00000352065 [bp] 4029 [Protein] 459aa [Translation ID] ENSP00000344823 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55729 [UniProt] Q9NQB0 [RefSeq] NM_001198527 NM_001198528 NP_001185456 NP_001185457 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-202 [Transcript ID] ENST00000355717 [bp] 4021 [Protein] 489aa [Translation ID] ENSP00000347949 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53578 [UniProt] Q9NQB0 [RefSeq] NM_001146283 NM_001146286 NP_001139755 NP_001139758 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-205 [Transcript ID] ENST00000536810 [bp] 3953 [Protein] 579aa [Translation ID] ENSP00000446238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73197 [UniProt] C6ZRK5 [RefSeq] NM_001146285 NP_001139757 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-003 [Transcript ID] ENST00000369397 [bp] 3802 [Protein] 596aa [Translation ID] ENSP00000358404 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7576 [UniProt] Q6FHW4 Q9NQB0 [RefSeq] NM_030756 NP_110383 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-204 [Transcript ID] ENST00000534894 [bp] 3778 [Protein] 408aa [Translation ID] ENSP00000443626 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73198 [UniProt] A0A0A0MTL7 [RefSeq] NM_001198530 NP_001185459 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-015 [Transcript ID] ENST00000627217 [bp] 3680 [Protein] 602aa [Translation ID] ENSP00000486891 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53577 [UniProt] - [RefSeq] NM_001146274 NP_001139746 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-207 [Transcript ID] ENST00000542695 [bp] 4136 [Protein] 534aa [Translation ID] ENSP00000443883 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C6ZRJ6 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-203 [Transcript ID] ENST00000355995 [bp] 4073 [Protein] 619aa [Translation ID] ENSP00000348274 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9NQB0 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-208 [Transcript ID] ENST00000543371 [bp] 4037 [Protein] 607aa [Translation ID] ENSP00000444972 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E2GH26 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-206 [Transcript ID] ENST00000538897 [bp] 4000 [Protein] 482aa [Translation ID] ENSP00000446172 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9NQB0 [RefSeq] NM_001146284 NM_001198529 NM_001198531 NP_001139756 NP_001185458 NP_001185460 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-014 [Transcript ID] ENST00000629706 [bp] 1755 [Protein] 584aa [Translation ID] ENSP00000487507 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] NM_001198526 NP_001185455 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-006 [Transcript ID] ENST00000369386 [bp] 1274 [Protein] 120aa [Translation ID] ENSP00000358393 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5JRY3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-004 [Transcript ID] ENST00000349937 [bp] 1174 [Protein] 288aa [Translation ID] ENSP00000298692 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5VVR8 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-001 [Transcript ID] ENST00000369395 [bp] 1041 [Protein] 317aa [Translation ID] ENSP00000358402 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5VVR7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-007 [Transcript ID] ENST00000369389 [bp] 738 [Protein] 176aa [Translation ID] ENSP00000358396 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5JRY4 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-002 [Transcript ID] ENST00000346198 [bp] 667 [Protein] 222aa [Translation ID] ENSP00000345640 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5VVR5 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-010 [Transcript ID] ENST00000277945 [bp] 620 [Protein] 207aa [Translation ID] ENSP00000277945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q5JRY5 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-013 [Transcript ID] ENST00000470254 [bp] 768 [Protein] 108aa [Translation ID] ENSP00000435694 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YEE5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-011 [Transcript ID] ENST00000466338 [bp] 1026 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-009 [Transcript ID] ENST00000476887 [bp] 836 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-012 [Transcript ID] ENST00000494353 [bp] 500 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-005 [Transcript ID] ENST00000471569 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
b4e33baa___TCF7L2_004__ENST00000349937___Flags | [Name] TCF7L2-008 [Transcript ID] ENST00000480888 [bp] 182 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: TCF7L2-004 (ENST00000349937) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000148737;r=10:112950452-113146103;t=ENST00000349937 | 27/1438042989826.86_20150728002309-00180-ip-10-236-191-2_441742075_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-001 [Transcript ID] ENST00000589123 [bp] 8068 [Protein] 499aa [Translation ID] ENSP00000465655 [CCDS] CCDS45914 [UniProt] P08651 [RefSeq] NM_205843 NP_995315 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-003 [Transcript ID] ENST00000395111 [bp] 1755 [Protein] 430aa [Translation ID] ENSP00000378543 [CCDS] CCDS58640 [UniProt] P08651 [RefSeq] NM_001245005 NP_001231934 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-006 [Transcript ID] ENST00000443272 [bp] 1716 [Protein] 508aa [Translation ID] ENSP00000396843 [CCDS] CCDS59330 [UniProt] P08651 [RefSeq] NM_001245002 NP_001231931 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-004 [Transcript ID] ENST00000341919 [bp] 1573 [Protein] 428aa [Translation ID] ENSP00000342194 [CCDS] CCDS12107 [UniProt] P08651 [RefSeq] NM_005597 NP_005588 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-005 [Transcript ID] ENST00000590282 [bp] 1558 [Protein] 439aa [Translation ID] ENSP00000466647 [CCDS] CCDS59331 [UniProt] P08651 [RefSeq] NM_001245004 NP_001231933 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-011 [Transcript ID] ENST00000586919 [bp] 1221 [Protein] 406aa [Translation ID] ENSP00000465177 [CCDS] - [UniProt] P08651 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-007 [Transcript ID] ENST00000588839 [bp] 625 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-009 [Transcript ID] ENST00000589164 [bp] 435 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-010 [Transcript ID] ENST00000589537 [bp] 977 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
2f0e10e6___Gene__NFIC__ENSG00000141905___Biotype | [Name] NFIC-008 [Transcript ID] ENST00000589969 [bp] 614 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
051465ee_t__UCHL1_010__ENST00000505232___Biotype | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - GO table - Transcript: UCHL1-010 (ENST00000505232) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000505232 | 27/1438042989826.86_20150728002309-00079-ip-10-236-191-2_436956903_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763 | 27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json |
306bd904_t__RAD51_006__ENST00000526763___UniProt | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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