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17071455_ene__SYNGAP1__ENSG00000197283___Biotype | [Name] SYNGAP1-005 [Transcript ID] ENST00000495633 [bp] 260 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
17071455_ene__SYNGAP1__ENSG00000197283___Biotype | [Name] SYNGAP1-002 [Transcript ID] ENST00000479510 [bp] 2073 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
17071455_ene__SYNGAP1__ENSG00000197283___Biotype | [Name] SYNGAP1-008 [Transcript ID] ENST00000470232 [bp] 394 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466 | 27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-001 [Transcript ID] ENST00000589123 [bp] 8068 [Protein] 499aa [Translation ID] ENSP00000465655 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45914 [UniProt] P08651 [RefSeq] NM_205843 NP_995315 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-003 [Transcript ID] ENST00000395111 [bp] 1755 [Protein] 430aa [Translation ID] ENSP00000378543 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58640 [UniProt] P08651 [RefSeq] NM_001245005 NP_001231934 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-006 [Transcript ID] ENST00000443272 [bp] 1716 [Protein] 508aa [Translation ID] ENSP00000396843 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59330 [UniProt] P08651 [RefSeq] NM_001245002 NP_001231931 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-004 [Transcript ID] ENST00000341919 [bp] 1573 [Protein] 428aa [Translation ID] ENSP00000342194 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12107 [UniProt] P08651 [RefSeq] NM_005597 NP_005588 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-005 [Transcript ID] ENST00000590282 [bp] 1558 [Protein] 439aa [Translation ID] ENSP00000466647 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59331 [UniProt] P08651 [RefSeq] NM_001245004 NP_001231933 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-011 [Transcript ID] ENST00000586919 [bp] 1221 [Protein] 406aa [Translation ID] ENSP00000465177 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P08651 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-007 [Transcript ID] ENST00000588839 [bp] 625 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-009 [Transcript ID] ENST00000589164 [bp] 435 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-010 [Transcript ID] ENST00000589537 [bp] 977 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
d1ad9e2a___Gene__NFIC__ENSG00000141905___Flags | [Name] NFIC-008 [Transcript ID] ENST00000589969 [bp] 614 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NFIC (ENSG00000141905) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000141905;r=19:3359563-3469217 | 27/1438042988051.33_20150728002308-00059-ip-10-236-191-2_422228782_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-020 [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-014 [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-007 [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-013 [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-010 [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-009 [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
96682f7f_t__CPT1B_020__ENST00000423069___Biotype | [Name] CPT1B-011 [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: CPT1B-020 (ENST00000423069) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000205560;r=22:50818468-50818468;t=ENST00000423069 | 27/1438042988051.33_20150728002308-00197-ip-10-236-191-2_419976661_0.json |
69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000425707 [bp] 3041 [Protein] 365aa [Translation ID] ENSP00000389993 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45671 [UniProt] P10276 [RefSeq] NM_001145302 NP_001138774 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | RARA-007 | [
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69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000254066 [bp] 2414 [Protein] 462aa [Translation ID] ENSP00000254066 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_000964 NP_000955 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | RARA-001 | [
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69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000394081 [bp] 2285 [Protein] 457aa [Translation ID] ENSP00000377643 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS42317 [UniProt] F1D8N9 P10276 [RefSeq] NM_001024809 NP_001019980 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | RARA-004 | [
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] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000394089 [bp] 2024 [Protein] 462aa [Translation ID] ENSP00000377649 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_001145301 NP_001138773 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | RARA-002 | [
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] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000394086 [bp] 2008 [Protein] 478aa [Translation ID] ENSP00000377648 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A8MUP8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | RARA-003 | [
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] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000475125 [bp] 813 [Protein] 186aa [Translation ID] ENSP00000462514 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KSJ4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | RARA-005 | [
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] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000577646 [bp] 733 [Protein] 66aa [Translation ID] ENSP00000464287 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3QRM2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | RARA-008 | [
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69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000420042 [bp] 1052 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | RARA-006 | [
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] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000582914 [bp] 581 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Name] | RARA-009 | [
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] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
69833cdb_pt__RARA_001__ENST00000254066___Name | [Transcript ID] ENST00000579727 [bp] 564 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Name] | RARA-010 | [
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] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-007 [Transcript ID] ENST00000425707 [bp] 3041 [Protein] 365aa [Translation ID] ENSP00000389993 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45671 [UniProt] P10276 [RefSeq] NM_001145302 NP_001138774 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-001 [Transcript ID] ENST00000254066 [bp] 2414 [Protein] 462aa [Translation ID] ENSP00000254066 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_000964 NP_000955 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-004 [Transcript ID] ENST00000394081 [bp] 2285 [Protein] 457aa [Translation ID] ENSP00000377643 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS42317 [UniProt] F1D8N9 P10276 [RefSeq] NM_001024809 NP_001019980 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-002 [Transcript ID] ENST00000394089 [bp] 2024 [Protein] 462aa [Translation ID] ENSP00000377649 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11366 [UniProt] P10276 Q6I9R7 [RefSeq] NM_001145301 NP_001138773 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-003 [Transcript ID] ENST00000394086 [bp] 2008 [Protein] 478aa [Translation ID] ENSP00000377648 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A8MUP8 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-005 [Transcript ID] ENST00000475125 [bp] 813 [Protein] 186aa [Translation ID] ENSP00000462514 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KSJ4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-008 [Transcript ID] ENST00000577646 [bp] 733 [Protein] 66aa [Translation ID] ENSP00000464287 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3QRM2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-006 [Transcript ID] ENST00000420042 [bp] 1052 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-009 [Transcript ID] ENST00000582914 [bp] 581 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
4aab461e_pt__RARA_001__ENST00000254066___Flags | [Name] RARA-010 [Transcript ID] ENST00000579727 [bp] 564 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: RARA-001 (ENST00000254066) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000131759;r=17:40309194-40356796;t=ENST00000254066 | 27/1438042988051.33_20150728002308-00269-ip-10-236-191-2_432082926_0.json |
7f4735fa___Cbfa2t3__ENSMUSG00000006362___Biotype | [Name] Cbfa2t3-001 [Transcript ID] ENSMUST00000127984 [bp] 4047 [Protein] 620aa [Translation ID] ENSMUSP00000118997 [CCDS] CCDS22744 [UniProt] B7ZP57 [RefSeq] NM_009824 NP_033954 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Cbfa2t3 (ENSMUSG00000006362) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000006362;r=8:122628739-122699109 | 27/1438042988051.33_20150728002308-00073-ip-10-236-191-2_430683688_0.json |
7f4735fa___Cbfa2t3__ENSMUSG00000006362___Biotype | [Name] Cbfa2t3-003 [Transcript ID] ENSMUST00000006525 [bp] 3161 [Protein] 559aa [Translation ID] ENSMUSP00000006525 [CCDS] CCDS52696 [UniProt] O54972 [RefSeq] NM_177289 NP_796263 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Cbfa2t3 (ENSMUSG00000006362) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000006362;r=8:122628739-122699109 | 27/1438042988051.33_20150728002308-00073-ip-10-236-191-2_430683688_0.json |
7f4735fa___Cbfa2t3__ENSMUSG00000006362___Biotype | [Name] Cbfa2t3-002 [Transcript ID] ENSMUST00000064674 [bp] 2867 [Protein] 585aa [Translation ID] ENSMUSP00000065728 [CCDS] CCDS52697 [UniProt] E9QM80 [RefSeq] NM_001109873 NP_001103343 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Cbfa2t3 (ENSMUSG00000006362) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000006362;r=8:122628739-122699109 | 27/1438042988051.33_20150728002308-00073-ip-10-236-191-2_430683688_0.json |
7f4735fa___Cbfa2t3__ENSMUSG00000006362___Biotype | [Name] Cbfa2t3-005 [Transcript ID] ENSMUST00000134045 [bp] 639 [Protein] 185aa [Translation ID] ENSMUSP00000117630 [CCDS] - [UniProt] D3Z3P7 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Cbfa2t3 (ENSMUSG00000006362) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000006362;r=8:122628739-122699109 | 27/1438042988051.33_20150728002308-00073-ip-10-236-191-2_430683688_0.json |
7f4735fa___Cbfa2t3__ENSMUSG00000006362___Biotype | [Name] Cbfa2t3-006 [Transcript ID] ENSMUST00000147374 [bp] 542 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Cbfa2t3 (ENSMUSG00000006362) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000006362;r=8:122628739-122699109 | 27/1438042988051.33_20150728002308-00073-ip-10-236-191-2_430683688_0.json |
7f4735fa___Cbfa2t3__ENSMUSG00000006362___Biotype | [Name] Cbfa2t3-007 [Transcript ID] ENSMUST00000142535 [bp] 408 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Cbfa2t3 (ENSMUSG00000006362) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000006362;r=8:122628739-122699109 | 27/1438042988051.33_20150728002308-00073-ip-10-236-191-2_430683688_0.json |
7f4735fa___Cbfa2t3__ENSMUSG00000006362___Biotype | [Name] Cbfa2t3-004 [Transcript ID] ENSMUST00000148630 [bp] 537 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Cbfa2t3 (ENSMUSG00000006362) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000006362;r=8:122628739-122699109 | 27/1438042988051.33_20150728002308-00073-ip-10-236-191-2_430683688_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-001 [Transcript ID] ENST00000521381 [bp] 7011 [Protein] 724aa [Translation ID] ENSP00000428056 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3993 [UniProt] P27986 [RefSeq] NM_181523 NP_852664 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-016 [Transcript ID] ENST00000521657 [bp] 3891 [Protein] 724aa [Translation ID] ENSP00000429277 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3993 [UniProt] P27986 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-002 [Transcript ID] ENST00000320694 [bp] 2625 [Protein] 424aa [Translation ID] ENSP00000323512 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3994 [UniProt] P27986 [RefSeq] NM_181524 NP_852665 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-004 [Transcript ID] ENST00000523872 [bp] 2473 [Protein] 361aa [Translation ID] ENSP00000430098 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56374 [UniProt] P27986 [RefSeq] NM_001242466 NP_001229395 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-003 [Transcript ID] ENST00000336483 [bp] 2439 [Protein] 454aa [Translation ID] ENSP00000338554 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3995 [UniProt] P27986 [RefSeq] NM_181504 NP_852556 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-010 [Transcript ID] ENST00000522084 [bp] 705 [Protein] 102aa [Translation ID] ENSP00000429766 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RHI0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-015 [Transcript ID] ENST00000519025 [bp] 567 [Protein] 189aa [Translation ID] ENSP00000429156 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YBC2 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-009 [Transcript ID] ENST00000523807 [bp] 552 [Protein] 117aa [Translation ID] ENSP00000430126 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RGI8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-011 [Transcript ID] ENST00000521409 [bp] 540 [Protein] 137aa [Translation ID] ENSP00000431058 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RJY0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-014 [Transcript ID] ENST00000520675 [bp] 395 [Protein] 132aa [Translation ID] ENSP00000428566 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YB27 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-012 [Transcript ID] ENST00000517698 [bp] 945 [Protein] 38aa [Translation ID] ENSP00000430424 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E5RK66 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-007 [Transcript ID] ENST00000517643 [bp] 586 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-005 [Transcript ID] ENST00000518813 [bp] 3722 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-006 [Transcript ID] ENST00000520550 [bp] 1468 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-008 [Transcript ID] ENST00000517412 [bp] 865 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
d645771d___PIK3R1_013__ENST00000518292___Flags | [Name] PIK3R1-013 [Transcript ID] ENST00000518292 [bp] 558 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PIK3R1-013 (ENST00000518292) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145675;r=5:68290672-68293392;t=ENST00000518292 | 27/1438042988051.33_20150728002308-00281-ip-10-236-191-2_437032717_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
5dcf2491_t__PDPK1_016__ENST00000462923___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-016 (ENST00000462923) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588006-2589522;t=ENST00000462923 | 27/1438042989826.86_20150728002309-00159-ip-10-236-191-2_433974434_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [CCDS] CCDS10062 [UniProt] Q06609 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [CCDS] CCDS53932 [UniProt] Q06609 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
f4533253_t__RAD51_002__ENST00000423169___Biotype | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169 | 27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json |
6430f67a_t__PARK7_002__ENST00000338639___UniProt | [Name] PARK7-001 [Transcript ID] ENST00000493678 [bp] 1088 [Protein] 189aa [Translation ID] ENSP00000418770 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
6430f67a_t__PARK7_002__ENST00000338639___UniProt | [Name] PARK7-005 [Transcript ID] ENST00000377491 [bp] 977 [Protein] 189aa [Translation ID] ENSP00000366711 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
6430f67a_t__PARK7_002__ENST00000338639___UniProt | [Name] PARK7-002 [Transcript ID] ENST00000338639 [bp] 949 [Protein] 189aa [Translation ID] ENSP00000340278 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] NM_001123377 NM_007262 NP_001116849 NP_009193 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
6430f67a_t__PARK7_002__ENST00000338639___UniProt | [Name] PARK7-006 [Transcript ID] ENST00000377488 [bp] 783 [Protein] 189aa [Translation ID] ENSP00000366708 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS93 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q99497 V9HWC2 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PARK7-002 (ENST00000338639) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000116288;r=1:8021954-8045310;t=ENST00000338639 | 27/1438042988051.33_20150728002308-00004-ip-10-236-191-2_432467496_0.json |
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