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MicPie
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unpredictable_ensembl-org

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87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name]
PRKACA-002
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name]
PRKACA-006
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
PRKACA-010
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name]
PRKACA-008
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
PRKACA-005
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name]
PRKACA-007
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name]
PRKACA-004
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
87edad69___PRKACA_005__ENST00000350356___Name
[Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name]
PRKACA-009
[ [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "1" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "3" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "2" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "6" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "1", "0" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "8" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "5" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "7" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "4" ], [ "P", "R", "K", "A", "C", "A", "-", "0", "0", "9" ] ]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Name
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-005 [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-007 [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-004 [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
8e81bc6c___PRKACA_005__ENST00000350356___Flags
[Name] PRKACA-009 [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Supporting evidence - Transcript: PRKACA-005 (ENST00000350356)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/SupportingEvidence?db=core;g=ENSG00000072062;r=19:14202509-14219202;t=ENST00000350356
28/1438042990112.92_20150728002310-00305-ip-10-236-191-2_418134022_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-005 [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-007 [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-004 [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
e96b7d11___PRKACA_010__ENST00000587372___Biotype
[Name] PRKACA-009 [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PRKACA-010 (ENST00000587372)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000072062;r=19:14093043-14106860;t=ENST00000587372
28/1438042989301.17_20150728002309-00064-ip-10-236-191-2_422059197_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt]
Q06609
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
Q9NZG9
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt]
E9PNT5
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [UniProt]
E9PJ30
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt]
E9PI54
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
7c3aafe0_t__RAD51_002__ENST00000423169___UniProt
[Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt]
H0YD61
[ [ "Q", "0", "6", "6", "0", "9" ], [ "Q", "9", "N", "Z", "G", "9" ], [ "E", "9", "P", "N", "T", "5" ], [ "E", "9", "P", "J", "3", "0" ], [ "E", "9", "P", "I", "5", "4" ], [ "H", "0", "Y", "D", "6", "1" ] ]
Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RAD51-002 (ENST00000423169)
UniProt
http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000051180;r=15:41021704-41023557;t=ENST00000423169
27/1438042989826.86_20150728002309-00311-ip-10-236-191-2_435265353_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [UniProt] Q06609 [RefSeq] NM_002875 NP_002866 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [UniProt] Q06609 [RefSeq] NM_001164270 NP_001157742 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_001164269 NP_001157741 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_133487 NP_597994 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
729d39c0_t__RAD51_006__ENST00000526763___Flags
[Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40987327-41023790;t=ENST00000526763
27/1438042989826.86_20150728002309-00017-ip-10-236-191-2_430580454_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
c8d47506_t__UCHL1_001__ENST00000284440___Flags
[Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: UCHL1-001 (ENST00000284440)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440
27/1438042989826.86_20150728002309-00272-ip-10-236-191-2_430000292_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
886049bf_t__PDPK1_006__ENST00000474706___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - ID History - Transcript: PDPK1-006 (ENST00000474706)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory/Protein?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000474706
27/1438042988051.33_20150728002308-00305-ip-10-236-191-2_433861431_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
000b7563_t__PDPK1_013__ENST00000441549___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - General identifiers - Transcript: PDPK1-013 (ENST00000441549)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Similarity?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000441549
27/1438042988051.33_20150728002308-00128-ip-10-236-191-2_429586761_0.json
17071455_ene__SYNGAP1__ENSG00000197283___Biotype
[Name] SYNGAP1-001 [Transcript ID] ENST00000629380 [bp] 9862 [Protein] 1343aa [Translation ID] ENSP00000486463 [CCDS] CCDS34434 [UniProt] - [RefSeq] NM_006772 NP_006763 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466
27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json
17071455_ene__SYNGAP1__ENSG00000197283___Biotype
[Name] SYNGAP1-010 [Transcript ID] ENST00000418600 [bp] 5828 [Protein] 1285aa [Translation ID] ENSP00000403636 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466
27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json
17071455_ene__SYNGAP1__ENSG00000197283___Biotype
[Name] SYNGAP1-003 [Transcript ID] ENST00000428982 [bp] 4339 [Protein] 1284aa [Translation ID] ENSP00000412475 [CCDS] - [UniProt] Q96PV0 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466
27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json
17071455_ene__SYNGAP1__ENSG00000197283___Biotype
[Name] SYNGAP1-007 [Transcript ID] ENST00000628646 [bp] 4264 [Protein] 1299aa [Translation ID] ENSP00000486431 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466
27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json
17071455_ene__SYNGAP1__ENSG00000197283___Biotype
[Name] SYNGAP1-009 [Transcript ID] ENST00000449372 [bp] 3930 [Protein] 1307aa [Translation ID] ENSP00000416519 [CCDS] - [UniProt] B7ZCA0 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466
27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json
17071455_ene__SYNGAP1__ENSG00000197283___Biotype
[Name] SYNGAP1-004 [Transcript ID] ENST00000293748 [bp] 4556 [Protein] 1284aa [Translation ID] ENSP00000293748 [CCDS] - [UniProt] A0A0A0MQZ2 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SYNGAP1 (ENSG00000197283)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000197283;r=6:33387847-33421466
27/1438042988051.33_20150728002308-00044-ip-10-236-191-2_429824597_0.json