task
stringlengths 42
48
| input
stringlengths 40
1.07k
| output
stringlengths 1
769
| options
sequence | pageTitle
stringlengths 20
107
| outputColName
stringclasses 9
values | url
stringlengths 64
176
| wdcFile
stringlengths 71
74
|
|---|---|---|---|---|---|---|---|
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-008 [Transcript ID] ENST00000461809 [bp] 3054 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-009 [Transcript ID] ENST00000473357 [bp] 2787 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-007 [Transcript ID] ENST00000489322 [bp] 2406 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-010 [Transcript ID] ENST00000486907 [bp] 2358 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-013 [Transcript ID] ENST00000473740 [bp] 887 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-016 [Transcript ID] ENST00000491948 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-021 [Transcript ID] ENST00000492516 [bp] 418 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-201 [Transcript ID] ENST00000614302 [bp] 3751 [Protein] 576aa [Translation ID] ENSP00000479130 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10974 [UniProt] Q4G176 [RefSeq] NM_001127214 NM_001243279 NM_174917 NP_001120686 NP_001230208 NP_777577 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-001 [Transcript ID] ENST00000317447 [bp] 3664 [Protein] 576aa [Translation ID] ENSP00000320646 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10974 [UniProt] Q4G176 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-003 [Transcript ID] ENST00000406948 [bp] 2247 [Protein] 576aa [Translation ID] ENSP00000384627 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10974 [UniProt] Q4G176 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-002 [Transcript ID] ENST00000378345 [bp] 1541 [Protein] 311aa [Translation ID] ENSP00000367596 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73926 [UniProt] F5H5A1 [RefSeq] NM_001284316 NP_001271245 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-014 [Transcript ID] ENST00000543676 [bp] 940 [Protein] 183aa [Translation ID] ENSP00000442683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YGC7 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-012 [Transcript ID] ENST00000544543 [bp] 883 [Protein] 235aa [Translation ID] ENSP00000442781 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5H755 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-009 [Transcript ID] ENST00000537290 [bp] 869 [Protein] 237aa [Translation ID] ENSP00000440734 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5GX20 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-010 [Transcript ID] ENST00000540697 [bp] 829 [Protein] 190aa [Translation ID] ENSP00000445397 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5H362 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-011 [Transcript ID] ENST00000537895 [bp] 550 [Protein] 106aa [Translation ID] ENSP00000439201 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F5H3B2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-023 [Transcript ID] ENST00000541755 [bp] 477 [Protein] 28aa [Translation ID] ENSP00000457301 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BTS0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-015 [Transcript ID] ENST00000538340 [bp] 434 [Protein] 144aa [Translation ID] ENSP00000445870 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YH37 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-013 [Transcript ID] ENST00000535176 [bp] 421 [Protein] 106aa [Translation ID] ENSP00000443428 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YGJ0 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-006 [Transcript ID] ENST00000542688 [bp] 2024 [Protein] 368aa [Translation ID] ENSP00000446281 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F5H2G6 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-005 [Transcript ID] ENST00000537116 [bp] 2496 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] NR_045667 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-021 [Transcript ID] ENST00000562204 [bp] 581 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-019 [Transcript ID] ENST00000562750 [bp] 506 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-020 [Transcript ID] ENST00000393145 [bp] 7020 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
e42e502e_t__ACSF3_002__ENST00000378345___Flags | [Name] ACSF3-016 [Transcript ID] ENST00000537155 [bp] 848 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ACSF3-002 (ENST00000378345) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000176715;r=16:89093898-89154588;t=ENST00000378345 | 23/1438042988930.94_20150728002308-00060-ip-10-236-191-2_433659316_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-005 [Transcript ID] ENST00000452699 [bp] 3981 [Protein] 1175aa [Translation ID] ENSP00000413307 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44073 [UniProt] Q9NQ11 [RefSeq] NM_001141973 NP_001135445 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-001 [Transcript ID] ENST00000326735 [bp] 3840 [Protein] 1180aa [Translation ID] ENSP00000327214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS175 [UniProt] Q9NQ11 [RefSeq] NM_022089 NP_071372 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-002 [Transcript ID] ENST00000341676 [bp] 3681 [Protein] 1158aa [Translation ID] ENSP00000341115 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44072 [UniProt] Q9NQ11 [RefSeq] NM_001141974 NP_001135446 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-201 [Transcript ID] ENST00000617114 [bp] 1723 [Protein] 228aa [Translation ID] ENSP00000478781 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WUM9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-007 [Transcript ID] ENST00000502418 [bp] 1201 [Protein] 398aa [Translation ID] ENSP00000423065 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y953 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-009 [Transcript ID] ENST00000510069 [bp] 962 [Protein] 321aa [Translation ID] ENSP00000424313 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K0 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-014 [Transcript ID] ENST00000503552 [bp] 774 [Protein] 258aa [Translation ID] ENSP00000421126 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8I1 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-012 [Transcript ID] ENST00000506174 [bp] 573 [Protein] 191aa [Translation ID] ENSP00000424393 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K4 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-010 [Transcript ID] ENST00000509619 [bp] 570 [Protein] 191aa [Translation ID] ENSP00000422668 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8Z6 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-011 [Transcript ID] ENST00000511957 [bp] 569 [Protein] 190aa [Translation ID] ENSP00000427241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YAI7 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-008 [Transcript ID] ENST00000508222 [bp] 562 [Protein] 188aa [Translation ID] ENSP00000422227 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8V5 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-004 [Transcript ID] ENST00000466561 [bp] 1851 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-003 [Transcript ID] ENST00000463860 [bp] 1639 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-006 [Transcript ID] ENST00000502860 [bp] 687 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
6ff65779__ATP13A2_011__ENST00000511957___Flags | [Name] ATP13A2-013 [Transcript ID] ENST00000509392 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
08dd2f41__Gene__PDPK1__ENSG00000140992___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: PDPK1 (ENSG00000140992) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000140992;r=16:2587980-2631662;t=ENST00000462923 | 23/1438042990609.0_20150728002310-00034-ip-10-236-191-2_439293110_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-001 [Transcript ID] ENSMUST00000109736 [bp] 2981 [Protein] 301aa [Translation ID] ENSMUSP00000105358 [CCDS] CCDS22486 [UniProt] Q9CWY8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-201 [Transcript ID] ENSMUST00000109738 [bp] 2044 [Protein] 301aa [Translation ID] ENSMUSP00000105360 [CCDS] CCDS22486 [UniProt] Q9CWY8 [RefSeq] NM_027187 NP_081463 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-008 [Transcript ID] ENSMUST00000147812 [bp] 1532 [Protein] 301aa [Translation ID] ENSMUSP00000120374 [CCDS] CCDS22486 [UniProt] Q9CWY8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-006 [Transcript ID] ENSMUST00000128972 [bp] 1141 [Protein] 284aa [Translation ID] ENSMUSP00000121864 [CCDS] - [UniProt] F6RP29 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-005 [Transcript ID] ENSMUST00000065049 [bp] 1006 [Protein] 254aa [Translation ID] ENSMUSP00000066769 [CCDS] - [UniProt] Q05C51 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-007 [Transcript ID] ENSMUST00000140561 [bp] 716 [Protein] 54aa [Translation ID] ENSMUSP00000118442 [CCDS] - [UniProt] D3YWG3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-003 [Transcript ID] ENSMUST00000130902 [bp] 423 [Protein] 12aa [Translation ID] ENSMUSP00000116164 [CCDS] - [UniProt] D3Z6L4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-002 [Transcript ID] ENSMUST00000137791 [bp] 749 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-004 [Transcript ID] ENSMUST00000122931 [bp] 829 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
f90dca1e__Rnaseh2a__ENSMUSG00000052926___Biotype | [Name] Rnaseh2a-009 [Transcript ID] ENSMUST00000126029 [bp] 338 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
0a22a6e5__Gene__UCHL1__ENSG00000154277___Flags | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparative Genomics - Gene: UCHL1 (ENSG00000154277) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000284440 | 23/1438042988930.94_20150728002308-00081-ip-10-236-191-2_435142586_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-001 [Transcript ID] ENST00000276440 [bp] 10075 [Protein] 1870aa [Translation ID] ENSP00000276440 [CCDS] CCDS6047 [UniProt] Q9H7D0 [RefSeq] NM_024940 NP_079216 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-004 [Transcript ID] ENST00000444569 [bp] 5335 [Protein] 1090aa [Translation ID] ENSP00000414125 [CCDS] - [UniProt] H0Y7N4 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-003 [Transcript ID] ENST00000481100 [bp] 2166 [Protein] 350aa [Translation ID] ENSP00000429737 [CCDS] - [UniProt] Q9H7D0 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-002 [Transcript ID] ENST00000410074 [bp] 786 [Protein] 83aa [Translation ID] ENSP00000387036 [CCDS] - [UniProt] B9A015 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-015 [Transcript ID] ENST00000467709 [bp] 4844 [Protein] 138aa [Translation ID] ENSP00000428479 [CCDS] - [UniProt] H0YB14 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-014 [Transcript ID] ENST00000521405 [bp] 1836 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-012 [Transcript ID] ENST00000479547 [bp] 1042 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-008 [Transcript ID] ENST00000481728 [bp] 780 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-005 [Transcript ID] ENST00000495236 [bp] 594 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-011 [Transcript ID] ENST00000463457 [bp] 459 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-007 [Transcript ID] ENST00000487948 [bp] 429 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
6b3ae872__Gene__DOCK5__ENSG00000147459___Biotype | [Name] DOCK5-006 [Transcript ID] ENST00000478099 [bp] 288 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Name] | PRKACA-001 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-003 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | PRKACA-002 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | PRKACA-006 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-010 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | PRKACA-008 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-005 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Name] | PRKACA-007 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | PRKACA-004 | [
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"1"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"3"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"2"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"6"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"1",
"0"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"8"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"5"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"7"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"4"
],
[
"P",
"R",
"K",
"A",
"C",
"A",
"-",
"0",
"0",
"9"
]
] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.