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7eeb3d50_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2649442-2651631;t=ENST00000462923 | 23/1438042988930.94_20150728002308-00237-ip-10-236-191-2_425458773_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
fce37867_t__PDPK1_012__ENST00000478708___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein sequence - Transcript: PDPK1-012 (ENST00000478708) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2588165-2647929;t=ENST00000478708 | 23/1438042988930.94_20150728002308-00038-ip-10-236-191-2_430961994_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-004 [Transcript ID] ENST00000409455 [bp] 2500 [Protein] 336aa [Translation ID] ENSP00000386383 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54394 [UniProt] A0A024RAH1 Q7Z4I7 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-003 [Transcript ID] ENST00000410011 [bp] 2335 [Protein] 336aa [Translation ID] ENSP00000387002 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54394 [UniProt] A0A024RAH1 Q7Z4I7 [RefSeq] NM_001161404 NP_001154876 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-002 [Transcript ID] ENST00000409808 [bp] 2315 [Protein] 336aa [Translation ID] ENSP00000386637 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54394 [UniProt] A0A024RAH1 Q7Z4I7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-005 [Transcript ID] ENST00000324938 [bp] 2111 [Protein] 365aa [Translation ID] ENSP00000326888 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS2147 [UniProt] Q7Z4I7 [RefSeq] NM_017980 NP_060450 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-001 [Transcript ID] ENST00000355119 [bp] 2045 [Protein] 341aa [Translation ID] ENSP00000347240 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54395 [UniProt] Q7Z4I7 [RefSeq] NM_001161403 NP_001154875 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-018 [Transcript ID] ENST00000545738 [bp] 1730 [Protein] 363aa [Translation ID] ENSP00000443794 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS54396 [UniProt] Q7Z4I7 [RefSeq] NM_001136037 NP_001129509 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-006 [Transcript ID] ENST00000410038 [bp] 1695 [Protein] 189aa [Translation ID] ENSP00000386570 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] NM_001256542 NP_001243471 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-009 [Transcript ID] ENST00000409286 [bp] 1678 [Protein] 189aa [Translation ID] ENSP00000386252 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-008 [Transcript ID] ENST00000409754 [bp] 1620 [Protein] 189aa [Translation ID] ENSP00000386345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-012 [Transcript ID] ENST00000409254 [bp] 867 [Protein] 189aa [Translation ID] ENSP00000386907 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-201 [Transcript ID] ENST00000612860 [bp] 1617 [Protein] 249aa [Translation ID] ENSP00000484949 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087X2F9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-007 [Transcript ID] ENST00000426981 [bp] 1409 [Protein] 169aa [Translation ID] ENSP00000397253 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y592 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-013 [Transcript ID] ENST00000413578 [bp] 930 [Protein] 60aa [Translation ID] ENSP00000388611 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WEF3 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-016 [Transcript ID] ENST00000494613 [bp] 1137 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-020 [Transcript ID] ENST00000582671 [bp] 531 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-014 [Transcript ID] ENST00000469300 [bp] 4807 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-011 [Transcript ID] ENST00000466410 [bp] 2592 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-017 [Transcript ID] ENST00000476932 [bp] 2269 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
546f58b9__Gene__LIMS2__ENSG00000072163___Flags | [Name] LIMS2-015 [Transcript ID] ENST00000484252 [bp] 2099 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-203 [Transcript ID] ENST00000344290 [bp] 6816 [Protein] 776aa [Translation ID] ENSP00000340820 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] NM_001123066 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-201 [Transcript ID] ENST00000262410 [bp] 6762 [Protein] 758aa [Translation ID] ENSP00000262410 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] NM_016835 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-204 [Transcript ID] ENST00000351559 [bp] 5811 [Protein] 441aa [Translation ID] ENSP00000303214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] NM_005910 NP_005901 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-202 [Transcript ID] ENST00000340799 [bp] 5724 [Protein] 412aa [Translation ID] ENSP00000340438 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] NM_001123067 NP_001116539 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-205 [Transcript ID] ENST00000535772 [bp] 5718 [Protein] 410aa [Translation ID] ENSP00000443028 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] NM_001203251 NM_001203252 NP_001190180 NP_001190181 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-002 [Transcript ID] ENST00000446361 [bp] 5345 [Protein] 383aa [Translation ID] ENSP00000408975 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11500 [UniProt] A0A024R9Y0 P10636 [RefSeq] NM_016834 NP_058518 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-004 [Transcript ID] ENST00000415613 [bp] 2331 [Protein] 776aa [Translation ID] ENSP00000410838 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-008 [Transcript ID] ENST00000571987 [bp] 2277 [Protein] 758aa [Translation ID] ENSP00000458742 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-007 [Transcript ID] ENST00000574436 [bp] 1326 [Protein] 441aa [Translation ID] ENSP00000460965 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-003 [Transcript ID] ENST00000420682 [bp] 1239 [Protein] 412aa [Translation ID] ENSP00000413056 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-006 [Transcript ID] ENST00000431008 [bp] 1233 [Protein] 410aa [Translation ID] ENSP00000389250 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-001 [Transcript ID] ENST00000334239 [bp] 1107 [Protein] 352aa [Translation ID] ENSP00000334886 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11502 [UniProt] P10636 [RefSeq] NM_016841 NP_058525 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-009 [Transcript ID] ENST00000576518 [bp] 6778 [Protein] 341aa [Translation ID] ENSP00000458621 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L170 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-011 [Transcript ID] ENST00000571311 [bp] 544 [Protein] 59aa [Translation ID] ENSP00000460048 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L2Z2 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-013 [Transcript ID] ENST00000570299 [bp] 889 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-012 [Transcript ID] ENST00000577017 [bp] 142 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-014 [Transcript ID] ENST00000572440 [bp] 5015 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b3989a4d_pt__MAPT_014__ENST00000572440___Flags | [Name] MAPT-010 [Transcript ID] ENST00000576238 [bp] 1065 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA | [] | Ensembl genome browser 81: Homo sapiens - ID History - Transcript: MAPT-014 (ENST00000572440) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Idhistory?db=core;g=ENSG00000186868;r=17:44052858-44057872;t=ENST00000572440 | 23/1438042989043.35_20150728002309-00127-ip-10-236-191-2_433083641_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-201 [Transcript ID] ENST00000611880 [bp] 3264 [Protein] 535aa [Translation ID] ENSP00000483038 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS74828 [UniProt] A0A087X018 [RefSeq] NM_001282864 NP_001269793 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-001 [Transcript ID] ENST00000345044 [bp] 3219 [Protein] 496aa [Translation ID] ENSP00000342542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46673 [UniProt] Q9BYW1 [RefSeq] NM_001024938 NP_001020109 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-002 [Transcript ID] ENST00000398356 [bp] 2388 [Protein] 503aa [Translation ID] ENSP00000381399 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13818 [UniProt] Q9BYW1 [RefSeq] NM_030807 NP_110434 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-004 [Transcript ID] ENST00000316185 [bp] 1555 [Protein] 499aa [Translation ID] ENSP00000326748 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS33616 [UniProt] Q9BYW1 [RefSeq] NM_001024939 NP_001020110 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-011 [Transcript ID] ENST00000405847 [bp] 730 [Protein] 179aa [Translation ID] ENSP00000384987 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MCM7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-014 [Transcript ID] ENST00000403208 [bp] 564 [Protein] 104aa [Translation ID] ENSP00000385949 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MCM1 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-003 [Transcript ID] ENST00000405340 [bp] 2748 [Protein] 222aa [Translation ID] ENSP00000385156 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WB79 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-006 [Transcript ID] ENST00000255830 [bp] 1436 [Protein] 98aa [Translation ID] ENSP00000255830 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WFA8 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-022 [Transcript ID] ENST00000423972 [bp] 742 [Protein] 105aa [Translation ID] ENSP00000403654 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WCV3 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-017 [Transcript ID] ENST00000436643 [bp] 683 [Protein] 113aa [Translation ID] ENSP00000398746 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WBG9 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-015 [Transcript ID] ENST00000418102 [bp] 559 [Protein] 48aa [Translation ID] ENSP00000398439 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WBK0 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-005 [Transcript ID] ENST00000467660 [bp] 1203 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-012 [Transcript ID] ENST00000405286 [bp] 1048 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-020 [Transcript ID] ENST00000472526 [bp] 651 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-023 [Transcript ID] ENST00000440493 [bp] 624 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-019 [Transcript ID] ENST00000482576 [bp] 558 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-008 [Transcript ID] ENST00000461809 [bp] 3054 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-009 [Transcript ID] ENST00000473357 [bp] 2787 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-007 [Transcript ID] ENST00000489322 [bp] 2406 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-010 [Transcript ID] ENST00000486907 [bp] 2358 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-013 [Transcript ID] ENST00000473740 [bp] 887 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-016 [Transcript ID] ENST00000491948 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
b2718d29__SLC2A11_011__ENST00000405847___Flags | [Name] SLC2A11-021 [Transcript ID] ENST00000492516 [bp] 418 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-002 [Transcript ID] ENST00000398457 [bp] 3119 [Protein] 668aa [Translation ID] ENSP00000381475 [CCDS] CCDS42937 [UniProt] P45844 [RefSeq] NM_207627 NM_207628 NP_997510 NP_997511 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-005 [Transcript ID] ENST00000343687 [bp] 3037 [Protein] 677aa [Translation ID] ENSP00000339744 [CCDS] CCDS13683 [UniProt] P45844 [RefSeq] NM_207174 NP_997057 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-006 [Transcript ID] ENST00000361802 [bp] 3034 [Protein] 678aa [Translation ID] ENSP00000354995 [CCDS] CCDS13682 [UniProt] P45844 [RefSeq] NM_004915 NP_004906 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-001 [Transcript ID] ENST00000398449 [bp] 2998 [Protein] 666aa [Translation ID] ENSP00000381467 [CCDS] CCDS42938 [UniProt] P45844 [RefSeq] NM_016818 NP_058198 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-004 [Transcript ID] ENST00000347800 [bp] 2923 [Protein] 663aa [Translation ID] ENSP00000291524 [CCDS] CCDS13681 [UniProt] P45844 [RefSeq] NM_207629 NP_997512 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-008 [Transcript ID] ENST00000398437 [bp] 3475 [Protein] 824aa [Translation ID] ENSP00000381464 [CCDS] - [UniProt] E9PGV9 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-010 [Transcript ID] ENST00000450121 [bp] 918 [Protein] 257aa [Translation ID] ENSP00000414541 [CCDS] - [UniProt] C9JKD9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-003 [Transcript ID] ENST00000462050 [bp] 3037 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-007 [Transcript ID] ENST00000472587 [bp] 2903 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-009 [Transcript ID] ENST00000496783 [bp] 1725 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
26a85a31__Gene__ABCG1__ENSG00000160179___Biotype | [Name] ABCG1-011 [Transcript ID] ENST00000467818 [bp] 792 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-001 [Transcript ID] ENST00000276440 [bp] 10075 [Protein] 1870aa [Translation ID] ENSP00000276440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6047 [UniProt] Q9H7D0 [RefSeq] NM_024940 NP_079216 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-004 [Transcript ID] ENST00000444569 [bp] 5335 [Protein] 1090aa [Translation ID] ENSP00000414125 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y7N4 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-003 [Transcript ID] ENST00000481100 [bp] 2166 [Protein] 350aa [Translation ID] ENSP00000429737 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9H7D0 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-002 [Transcript ID] ENST00000410074 [bp] 786 [Protein] 83aa [Translation ID] ENSP00000387036 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B9A015 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-015 [Transcript ID] ENST00000467709 [bp] 4844 [Protein] 138aa [Translation ID] ENSP00000428479 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YB14 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-014 [Transcript ID] ENST00000521405 [bp] 1836 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-012 [Transcript ID] ENST00000479547 [bp] 1042 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-008 [Transcript ID] ENST00000481728 [bp] 780 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-005 [Transcript ID] ENST00000495236 [bp] 594 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-011 [Transcript ID] ENST00000463457 [bp] 459 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-007 [Transcript ID] ENST00000487948 [bp] 429 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
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