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a96655ad__Gene__DOCK5__ENSG00000147459___Flags | [Name] DOCK5-006 [Transcript ID] ENST00000478099 [bp] 288 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: DOCK5 (ENSG00000147459) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree/Align?g=ENSG00000147459;r=8:25042238-25275598 | 23/1438042988930.94_20150728002308-00116-ip-10-236-191-2_430423584_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
aa4e116d_t__PDPK1_009__ENST00000460496___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
6d9e230a_t__PDPK1_006__ENST00000474706___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Transcript: PDPK1-006 (ENST00000474706) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Image?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000474706 | 23/1438042989043.35_20150728002309-00195-ip-10-236-191-2_431924544_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-001 [Transcript ID] ENSMUST00000109736 [bp] 2981 [Protein] 301aa [Translation ID] ENSMUSP00000105358 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS22486 [UniProt] Q9CWY8 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-201 [Transcript ID] ENSMUST00000109738 [bp] 2044 [Protein] 301aa [Translation ID] ENSMUSP00000105360 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS22486 [UniProt] Q9CWY8 [RefSeq] NM_027187 NP_081463 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-008 [Transcript ID] ENSMUST00000147812 [bp] 1532 [Protein] 301aa [Translation ID] ENSMUSP00000120374 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS22486 [UniProt] Q9CWY8 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-006 [Transcript ID] ENSMUST00000128972 [bp] 1141 [Protein] 284aa [Translation ID] ENSMUSP00000121864 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F6RP29 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-005 [Transcript ID] ENSMUST00000065049 [bp] 1006 [Protein] 254aa [Translation ID] ENSMUSP00000066769 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q05C51 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-007 [Transcript ID] ENSMUST00000140561 [bp] 716 [Protein] 54aa [Translation ID] ENSMUSP00000118442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YWG3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-003 [Transcript ID] ENSMUST00000130902 [bp] 423 [Protein] 12aa [Translation ID] ENSMUSP00000116164 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3Z6L4 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-002 [Transcript ID] ENSMUST00000137791 [bp] 749 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-004 [Transcript ID] ENSMUST00000122931 [bp] 829 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
1ec8d039__Rnaseh2a__ENSMUSG00000052926___Flags | [Name] Rnaseh2a-009 [Transcript ID] ENSMUST00000126029 [bp] 338 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Rnaseh2a (ENSMUSG00000052926) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000052926;r=8:84956610-84969767 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421154094_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-003 [Transcript ID] ENST00000545748 [bp] 3511 [Protein] 652aa [Translation ID] ENSP00000440864 [CCDS] CCDS73471 [UniProt] F5GXF0 [RefSeq] NM_001202234 NP_001189163 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-201 [Transcript ID] ENST00000243050 [bp] 2678 [Protein] 598aa [Translation ID] ENSP00000243050 [CCDS] CCDS8818 [UniProt] A0A024R126 P22736 [RefSeq] NM_002135 NP_002126 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-002 [Transcript ID] ENST00000394824 [bp] 2639 [Protein] 598aa [Translation ID] ENSP00000378301 [CCDS] CCDS8818 [UniProt] A0A024R126 P22736 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-202 [Transcript ID] ENST00000360284 [bp] 2589 [Protein] 611aa [Translation ID] ENSP00000353427 [CCDS] CCDS55828 [UniProt] P22736 [RefSeq] NM_001202233 NP_001189162 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-203 [Transcript ID] ENST00000394825 [bp] 2528 [Protein] 598aa [Translation ID] ENSP00000378302 [CCDS] CCDS8818 [UniProt] A0A024R126 P22736 [RefSeq] NM_173157 NP_775180 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-004 [Transcript ID] ENST00000550082 [bp] 2029 [Protein] 611aa [Translation ID] ENSP00000449539 [CCDS] CCDS55828 [UniProt] P22736 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-012 [Transcript ID] ENST00000546842 [bp] 1258 [Protein] 302aa [Translation ID] ENSP00000457070 [CCDS] - [UniProt] H3BT85 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-006 [Transcript ID] ENST00000548232 [bp] 1101 [Protein] 325aa [Translation ID] ENSP00000449587 [CCDS] - [UniProt] P22736 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-021 [Transcript ID] ENST00000562373 [bp] 838 [Protein] 150aa [Translation ID] ENSP00000455399 [CCDS] - [UniProt] H3BPN8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-016 [Transcript ID] ENST00000550582 [bp] 607 [Protein] 120aa [Translation ID] ENSP00000455767 [CCDS] - [UniProt] H3BQG5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-013 [Transcript ID] ENST00000550763 [bp] 574 [Protein] 148aa [Translation ID] ENSP00000449858 [CCDS] - [UniProt] F8VVX9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-011 [Transcript ID] ENST00000548977 [bp] 548 [Protein] 119aa [Translation ID] ENSP00000456633 [CCDS] - [UniProt] H3BSB9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-010 [Transcript ID] ENST00000553200 [bp] 521 [Protein] 79aa [Translation ID] ENSP00000456776 [CCDS] - [UniProt] H3BSM8 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-009 [Transcript ID] ENST00000547206 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-014 [Transcript ID] ENST00000548733 [bp] 535 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-005 [Transcript ID] ENST00000550557 [bp] 4837 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-001 [Transcript ID] ENST00000478250 [bp] 1820 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-019 [Transcript ID] ENST00000564201 [bp] 752 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-018 [Transcript ID] ENST00000565848 [bp] 691 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-020 [Transcript ID] ENST00000567890 [bp] 612 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-008 [Transcript ID] ENST00000549102 [bp] 600 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
67086a78__Gene__NR4A1__ENSG00000123358___Biotype | [Name] NR4A1-017 [Transcript ID] ENST00000550339 [bp] 500 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NR4A1 (ENSG00000123358) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000123358;r=12:52022832-52059507 | 23/1438042988930.94_20150728002308-00069-ip-10-236-191-2_429984826_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
d108cde1_t__PDPK1_018__ENST00000569721___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-201 [Transcript ID] ENST00000611880 [bp] 3264 [Protein] 535aa [Translation ID] ENSP00000483038 [CCDS] CCDS74828 [UniProt] A0A087X018 [RefSeq] NM_001282864 NP_001269793 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-001 [Transcript ID] ENST00000345044 [bp] 3219 [Protein] 496aa [Translation ID] ENSP00000342542 [CCDS] CCDS46673 [UniProt] Q9BYW1 [RefSeq] NM_001024938 NP_001020109 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-002 [Transcript ID] ENST00000398356 [bp] 2388 [Protein] 503aa [Translation ID] ENSP00000381399 [CCDS] CCDS13818 [UniProt] Q9BYW1 [RefSeq] NM_030807 NP_110434 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-004 [Transcript ID] ENST00000316185 [bp] 1555 [Protein] 499aa [Translation ID] ENSP00000326748 [CCDS] CCDS33616 [UniProt] Q9BYW1 [RefSeq] NM_001024939 NP_001020110 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-011 [Transcript ID] ENST00000405847 [bp] 730 [Protein] 179aa [Translation ID] ENSP00000384987 [CCDS] - [UniProt] B5MCM7 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-014 [Transcript ID] ENST00000403208 [bp] 564 [Protein] 104aa [Translation ID] ENSP00000385949 [CCDS] - [UniProt] B5MCM1 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-003 [Transcript ID] ENST00000405340 [bp] 2748 [Protein] 222aa [Translation ID] ENSP00000385156 [CCDS] - [UniProt] F8WB79 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-006 [Transcript ID] ENST00000255830 [bp] 1436 [Protein] 98aa [Translation ID] ENSP00000255830 [CCDS] - [UniProt] F8WFA8 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-022 [Transcript ID] ENST00000423972 [bp] 742 [Protein] 105aa [Translation ID] ENSP00000403654 [CCDS] - [UniProt] F8WCV3 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-017 [Transcript ID] ENST00000436643 [bp] 683 [Protein] 113aa [Translation ID] ENSP00000398746 [CCDS] - [UniProt] F8WBG9 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-015 [Transcript ID] ENST00000418102 [bp] 559 [Protein] 48aa [Translation ID] ENSP00000398439 [CCDS] - [UniProt] F8WBK0 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-005 [Transcript ID] ENST00000467660 [bp] 1203 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-012 [Transcript ID] ENST00000405286 [bp] 1048 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-020 [Transcript ID] ENST00000472526 [bp] 651 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-023 [Transcript ID] ENST00000440493 [bp] 624 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
ba238950__SLC2A11_011__ENST00000405847___Biotype | [Name] SLC2A11-019 [Transcript ID] ENST00000482576 [bp] 558 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SLC2A11-011 (ENST00000405847) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000133460;r=22:23856934-23877328;t=ENST00000405847 | 23/1438042990609.0_20150728002310-00204-ip-10-236-191-2_424979972_0.json |
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