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9c760c95___PRKACA_004__ENST00000536649___Name | [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | PRKACA-009 | [
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] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: PRKACA-004 (ENST00000536649) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000072062;r=19:14096971-14112647;t=ENST00000536649 | 23/1438042988930.94_20150728002308-00318-ip-10-236-191-2_434214979_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-002 [Transcript ID] ENST00000377214 [bp] 2440 [Protein] 450aa [Translation ID] ENSP00000366419 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58671 [UniProt] A0A024QZE2 Q15562 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-006 [Transcript ID] ENST00000598810 [bp] 2191 [Protein] 451aa [Translation ID] ENSP00000472109 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59406 [UniProt] Q15562 [RefSeq] NM_001256661 NP_001243590 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-003 [Transcript ID] ENST00000601519 [bp] 2167 [Protein] 450aa [Translation ID] ENSP00000469672 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58671 [UniProt] A0A024QZE2 Q15562 [RefSeq] NM_001256658 NM_001256659 NP_001243587 NP_001243588 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-001 [Transcript ID] ENST00000311227 [bp] 2164 [Protein] 447aa [Translation ID] ENSP00000310701 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12761 [UniProt] Q15562 [RefSeq] NM_003598 NP_003589 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-005 [Transcript ID] ENST00000593945 [bp] 2141 [Protein] 451aa [Translation ID] ENSP00000469640 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS59406 [UniProt] Q15562 [RefSeq] NM_001256660 NP_001243589 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-004 [Transcript ID] ENST00000539846 [bp] 1444 [Protein] 319aa [Translation ID] ENSP00000437928 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58670 [UniProt] Q15562 [RefSeq] NM_001256662 NP_001243591 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-010 [Transcript ID] ENST00000596757 [bp] 579 [Protein] 116aa [Translation ID] ENSP00000472397 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] M0R290 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-009 [Transcript ID] ENST00000598823 [bp] 566 [Protein] 74aa [Translation ID] ENSP00000471743 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] M0R1A5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-007 [Transcript ID] ENST00000598397 [bp] 581 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
d85bb4ef__Gene__TEAD2__ENSG00000074219___Flags | [Name] TEAD2-008 [Transcript ID] ENST00000595233 [bp] 209 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: TEAD2 (ENSG00000074219) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000074219;r=19:49340595-49362457 | 23/1438042988930.94_20150728002308-00247-ip-10-236-191-2_421115425_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
3fd0fb9d_t__PDPK1_009__ENST00000460496___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PDPK1-009 (ENST00000460496) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000460496 | 23/1438042989043.35_20150728002309-00286-ip-10-236-191-2_428120601_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
279cf5d6_pt__SNCA_003__ENST00000336904___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SNCA-003 (ENST00000336904) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000145335;r=4:90743003-90756846;t=ENST00000336904 | 23/1438042988930.94_20150728002308-00327-ip-10-236-191-2_425301767_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-005 [Transcript ID] ENST00000452699 [bp] 3981 [Protein] 1175aa [Translation ID] ENSP00000413307 [CCDS] CCDS44073 [UniProt] Q9NQ11 [RefSeq] NM_001141973 NP_001135445 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-001 [Transcript ID] ENST00000326735 [bp] 3840 [Protein] 1180aa [Translation ID] ENSP00000327214 [CCDS] CCDS175 [UniProt] Q9NQ11 [RefSeq] NM_022089 NP_071372 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-002 [Transcript ID] ENST00000341676 [bp] 3681 [Protein] 1158aa [Translation ID] ENSP00000341115 [CCDS] CCDS44072 [UniProt] Q9NQ11 [RefSeq] NM_001141974 NP_001135446 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-201 [Transcript ID] ENST00000617114 [bp] 1723 [Protein] 228aa [Translation ID] ENSP00000478781 [CCDS] - [UniProt] A0A087WUM9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-007 [Transcript ID] ENST00000502418 [bp] 1201 [Protein] 398aa [Translation ID] ENSP00000423065 [CCDS] - [UniProt] H0Y953 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-009 [Transcript ID] ENST00000510069 [bp] 962 [Protein] 321aa [Translation ID] ENSP00000424313 [CCDS] - [UniProt] H0Y9K0 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-014 [Transcript ID] ENST00000503552 [bp] 774 [Protein] 258aa [Translation ID] ENSP00000421126 [CCDS] - [UniProt] H0Y8I1 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-012 [Transcript ID] ENST00000506174 [bp] 573 [Protein] 191aa [Translation ID] ENSP00000424393 [CCDS] - [UniProt] H0Y9K4 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-010 [Transcript ID] ENST00000509619 [bp] 570 [Protein] 191aa [Translation ID] ENSP00000422668 [CCDS] - [UniProt] H0Y8Z6 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-011 [Transcript ID] ENST00000511957 [bp] 569 [Protein] 190aa [Translation ID] ENSP00000427241 [CCDS] - [UniProt] H0YAI7 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-008 [Transcript ID] ENST00000508222 [bp] 562 [Protein] 188aa [Translation ID] ENSP00000422227 [CCDS] - [UniProt] H0Y8V5 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-004 [Transcript ID] ENST00000466561 [bp] 1851 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-003 [Transcript ID] ENST00000463860 [bp] 1639 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-006 [Transcript ID] ENST00000502860 [bp] 687 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
221fcaba__ATP13A2_011__ENST00000511957___Biotype | [Name] ATP13A2-013 [Transcript ID] ENST00000509392 [bp] 572 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ATP13A2-011 (ENST00000511957) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000511957 | 23/1438042988930.94_20150728002308-00123-ip-10-236-191-2_426803213_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-004 [Transcript ID] ENST00000409455 [bp] 2500 [Protein] 336aa [Translation ID] ENSP00000386383 [CCDS] CCDS54394 [UniProt] A0A024RAH1 Q7Z4I7 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-003 [Transcript ID] ENST00000410011 [bp] 2335 [Protein] 336aa [Translation ID] ENSP00000387002 [CCDS] CCDS54394 [UniProt] A0A024RAH1 Q7Z4I7 [RefSeq] NM_001161404 NP_001154876 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-002 [Transcript ID] ENST00000409808 [bp] 2315 [Protein] 336aa [Translation ID] ENSP00000386637 [CCDS] CCDS54394 [UniProt] A0A024RAH1 Q7Z4I7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-005 [Transcript ID] ENST00000324938 [bp] 2111 [Protein] 365aa [Translation ID] ENSP00000326888 [CCDS] CCDS2147 [UniProt] Q7Z4I7 [RefSeq] NM_017980 NP_060450 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-001 [Transcript ID] ENST00000355119 [bp] 2045 [Protein] 341aa [Translation ID] ENSP00000347240 [CCDS] CCDS54395 [UniProt] Q7Z4I7 [RefSeq] NM_001161403 NP_001154875 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-018 [Transcript ID] ENST00000545738 [bp] 1730 [Protein] 363aa [Translation ID] ENSP00000443794 [CCDS] CCDS54396 [UniProt] Q7Z4I7 [RefSeq] NM_001136037 NP_001129509 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-006 [Transcript ID] ENST00000410038 [bp] 1695 [Protein] 189aa [Translation ID] ENSP00000386570 [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] NM_001256542 NP_001243471 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-009 [Transcript ID] ENST00000409286 [bp] 1678 [Protein] 189aa [Translation ID] ENSP00000386252 [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-008 [Transcript ID] ENST00000409754 [bp] 1620 [Protein] 189aa [Translation ID] ENSP00000386345 [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-012 [Transcript ID] ENST00000409254 [bp] 867 [Protein] 189aa [Translation ID] ENSP00000386907 [CCDS] CCDS58725 [UniProt] Q7Z4I7 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-201 [Transcript ID] ENST00000612860 [bp] 1617 [Protein] 249aa [Translation ID] ENSP00000484949 [CCDS] - [UniProt] A0A087X2F9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-007 [Transcript ID] ENST00000426981 [bp] 1409 [Protein] 169aa [Translation ID] ENSP00000397253 [CCDS] - [UniProt] H0Y592 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-013 [Transcript ID] ENST00000413578 [bp] 930 [Protein] 60aa [Translation ID] ENSP00000388611 [CCDS] - [UniProt] F8WEF3 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-016 [Transcript ID] ENST00000494613 [bp] 1137 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-020 [Transcript ID] ENST00000582671 [bp] 531 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-014 [Transcript ID] ENST00000469300 [bp] 4807 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-011 [Transcript ID] ENST00000466410 [bp] 2592 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-017 [Transcript ID] ENST00000476932 [bp] 2269 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
ce10f0b9__Gene__LIMS2__ENSG00000072163___Biotype | [Name] LIMS2-015 [Transcript ID] ENST00000484252 [bp] 2099 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: LIMS2 (ENSG00000072163) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000072163;r=2:127638381-127681786 | 23/1438042990609.0_20150728002310-00112-ip-10-236-191-2_417730359_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-002 [Transcript ID] ENST00000398457 [bp] 3119 [Protein] 668aa [Translation ID] ENSP00000381475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS42937 [UniProt] P45844 [RefSeq] NM_207627 NM_207628 NP_997510 NP_997511 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-005 [Transcript ID] ENST00000343687 [bp] 3037 [Protein] 677aa [Translation ID] ENSP00000339744 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13683 [UniProt] P45844 [RefSeq] NM_207174 NP_997057 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-006 [Transcript ID] ENST00000361802 [bp] 3034 [Protein] 678aa [Translation ID] ENSP00000354995 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13682 [UniProt] P45844 [RefSeq] NM_004915 NP_004906 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-001 [Transcript ID] ENST00000398449 [bp] 2998 [Protein] 666aa [Translation ID] ENSP00000381467 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS42938 [UniProt] P45844 [RefSeq] NM_016818 NP_058198 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-004 [Transcript ID] ENST00000347800 [bp] 2923 [Protein] 663aa [Translation ID] ENSP00000291524 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13681 [UniProt] P45844 [RefSeq] NM_207629 NP_997512 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-008 [Transcript ID] ENST00000398437 [bp] 3475 [Protein] 824aa [Translation ID] ENSP00000381464 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PGV9 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-010 [Transcript ID] ENST00000450121 [bp] 918 [Protein] 257aa [Translation ID] ENSP00000414541 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JKD9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-003 [Transcript ID] ENST00000462050 [bp] 3037 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-007 [Transcript ID] ENST00000472587 [bp] 2903 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-009 [Transcript ID] ENST00000496783 [bp] 1725 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
da81e424__Gene__ABCG1__ENSG00000160179___Flags | [Name] ABCG1-011 [Transcript ID] ENST00000467818 [bp] 792 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: ABCG1 (ENSG00000160179) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000160179;r=21:42199689-42297244 | 23/1438042988930.94_20150728002308-00015-ip-10-236-191-2_423996498_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
c97538fd_t__PDPK1_018__ENST00000569721___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: PDPK1-018 (ENST00000569721) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000569721 | 23/1438042988930.94_20150728002308-00169-ip-10-236-191-2_428695272_0.json |
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