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d101f649__PDE4DIP_007__ENST00000369347___Flags | [Name] PDE4DIP-022 [Transcript ID] ENST00000477941 [bp] 586 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
d101f649__PDE4DIP_007__ENST00000369347___Flags | [Name] PDE4DIP-062 [Transcript ID] ENST00000534367 [bp] 578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
d101f649__PDE4DIP_007__ENST00000369347___Flags | [Name] PDE4DIP-061 [Transcript ID] ENST00000534466 [bp] 565 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
d101f649__PDE4DIP_007__ENST00000369347___Flags | [Name] PDE4DIP-058 [Transcript ID] ENST00000527901 [bp] 561 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
ffb72fef___Gene__SNCA__ENSG00000145335___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Phenotype - Gene: SNCA (ENSG00000145335) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Phenotype?g=ENSG00000145335;r=4:90645250-90759466 | 50/1438042985647.51_20150728002305-00283-ip-10-236-191-2_430032302_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
d3356b64_pt__SNCA_006__ENST00000506244___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-006 (ENST00000506244) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:90647728-90758319;t=ENST00000506244 | 50/1438042985647.51_20150728002305-00043-ip-10-236-191-2_436478751_0.json |
6682befe___Gene__NEFM__ENSG00000104722___Biotype | [Name] NEFM-001 [Transcript ID] ENST00000221166 [bp] 4020 [Protein] 916aa [Translation ID] ENSP00000221166 [CCDS] CCDS6046 [UniProt] P07197 [RefSeq] NM_005382 NP_005373 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
6682befe___Gene__NEFM__ENSG00000104722___Biotype | [Name] NEFM-002 [Transcript ID] ENST00000433454 [bp] 2519 [Protein] 540aa [Translation ID] ENSP00000412295 [CCDS] CCDS47831 [UniProt] P07197 [RefSeq] NM_001105541 NP_001099011 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
6682befe___Gene__NEFM__ENSG00000104722___Biotype | [Name] NEFM-201 [Transcript ID] ENST00000437366 [bp] 3148 [Protein] 877aa [Translation ID] ENSP00000410137 [CCDS] - [UniProt] E7ESP9 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
6682befe___Gene__NEFM__ENSG00000104722___Biotype | [Name] NEFM-003 [Transcript ID] ENST00000518131 [bp] 2500 [Protein] 698aa [Translation ID] ENSP00000427872 [CCDS] - [UniProt] E7EMV2 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
6682befe___Gene__NEFM__ENSG00000104722___Biotype | [Name] NEFM-004 [Transcript ID] ENST00000521540 [bp] 1885 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
6682befe___Gene__NEFM__ENSG00000104722___Biotype | [Name] NEFM-006 [Transcript ID] ENST00000523467 [bp] 582 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-203 [Transcript ID] ENST00000448921 [bp] 3532 [Protein] 418aa [Translation ID] ENSP00000416066 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002236 NM_001127701 NM_001127703 NM_001127704 NM_001127705 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-202 [Transcript ID] ENST00000437397 [bp] 3340 [Protein] 418aa [Translation ID] ENSP00000408474 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001127702 NM_001127706 NM_001127707 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-201 [Transcript ID] ENST00000355814 [bp] 3236 [Protein] 418aa [Translation ID] ENSP00000348068 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_001002235 NM_001127700 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-001 [Transcript ID] ENST00000440909 [bp] 3144 [Protein] 418aa [Translation ID] ENSP00000390299 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-002 [Transcript ID] ENST00000393088 [bp] 1885 [Protein] 418aa [Translation ID] ENSP00000376803 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-003 [Transcript ID] ENST00000404814 [bp] 1628 [Protein] 418aa [Translation ID] ENSP00000385960 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-004 [Transcript ID] ENST00000393087 [bp] 1622 [Protein] 418aa [Translation ID] ENSP00000376802 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] NM_000295 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-008 [Transcript ID] ENST00000449399 [bp] 1559 [Protein] 418aa [Translation ID] ENSP00000416354 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9925 [UniProt] E9KL23 P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-006 [Transcript ID] ENST00000402629 [bp] 1450 [Protein] 359aa [Translation ID] ENSP00000386094 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-007 [Transcript ID] ENST00000557492 [bp] 951 [Protein] 144aa [Translation ID] ENSP00000452452 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0B4J278 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-017 [Transcript ID] ENST00000556091 [bp] 643 [Protein] 156aa [Translation ID] ENSP00000452169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V544 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-010 [Transcript ID] ENST00000557118 [bp] 583 [Protein] 22aa [Translation ID] ENSP00000451826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V4I7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-015 [Transcript ID] ENST00000553327 [bp] 581 [Protein] 92aa [Translation ID] ENSP00000452480 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5R8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-011 [Transcript ID] ENST00000556955 [bp] 571 [Protein] 117aa [Translation ID] ENSP00000451098 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V387 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-016 [Transcript ID] ENST00000554720 [bp] 446 [Protein] 105aa [Translation ID] ENSP00000450561 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V2B9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-005 [Transcript ID] ENST00000489769 [bp] 1562 [Protein] 306aa [Translation ID] ENSP00000451525 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] P01009 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-014 [Transcript ID] ENST00000555289 [bp] 609 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-012 [Transcript ID] ENST00000557093 [bp] 568 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
65253728_SERPINA1_006__ENST00000402629___Flags | [Name] SERPINA1-013 [Transcript ID] ENST00000557361 [bp] 580 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: SERPINA1-006 (ENST00000402629) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000197249;r=14:94379113-94388589;t=ENST00000402629 | 50/1438042991951.97_20150728002311-00043-ip-10-236-191-2_421757577_0.json |
4c3c0999__Kras_005__ENSMUST00000123972___Biotype | [Name] Kras-001 [Transcript ID] ENSMUST00000032399 [bp] 4678 [Protein] 188aa [Translation ID] ENSMUSP00000032399 [CCDS] CCDS20693 [UniProt] P32883 Q5J7N1 [RefSeq] NM_021284 NP_067259 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
4c3c0999__Kras_005__ENSMUST00000123972___Biotype | [Name] Kras-002 [Transcript ID] ENSMUST00000111710 [bp] 1194 [Protein] 189aa [Translation ID] ENSMUSP00000107339 [CCDS] - [UniProt] P32883 Q0VDV7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
4c3c0999__Kras_005__ENSMUST00000123972___Biotype | [Name] Kras-003 [Transcript ID] ENSMUST00000155145 [bp] 381 [Protein] 34aa [Translation ID] ENSMUSP00000118251 [CCDS] - [UniProt] B2KGV5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
4c3c0999__Kras_005__ENSMUST00000123972___Biotype | [Name] Kras-006 [Transcript ID] ENSMUST00000156486 [bp] 832 [Protein] 40aa [Translation ID] ENSMUSP00000119414 [CCDS] - [UniProt] E9Q8V2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
4c3c0999__Kras_005__ENSMUST00000123972___Biotype | [Name] Kras-005 [Transcript ID] ENSMUST00000123972 [bp] 816 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
4c3c0999__Kras_005__ENSMUST00000123972___Biotype | [Name] Kras-004 [Transcript ID] ENSMUST00000149314 [bp] 599 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Biotype | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-201 [Transcript ID] ENST00000393118 [bp] 4281 [Protein] 558aa [Translation ID] ENSP00000376826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47716 [UniProt] Q05682 [RefSeq] NM_033139 NP_149130 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-001 [Transcript ID] ENST00000361901 [bp] 4114 [Protein] 538aa [Translation ID] ENSP00000354513 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5834 [UniProt] Q05682 [RefSeq] NM_004342 NP_004333 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-005 [Transcript ID] ENST00000361675 [bp] 3612 [Protein] 793aa [Translation ID] ENSP00000354826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5835 [UniProt] Q05682 [RefSeq] NM_033138 NP_149129 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-003 [Transcript ID] ENST00000422748 [bp] 2665 [Protein] 563aa [Translation ID] ENSP00000395710 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5836 [UniProt] Q05682 [RefSeq] NM_033157 NP_149347 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-010 [Transcript ID] ENST00000424922 [bp] 2124 [Protein] 532aa [Translation ID] ENSP00000393621 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47717 [UniProt] Q05682 [RefSeq] NM_033140 NP_149131 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-002 [Transcript ID] ENST00000417172 [bp] 1915 [Protein] 538aa [Translation ID] ENSP00000398826 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5834 [UniProt] Q05682 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-029 [Transcript ID] ENST00000495522 [bp] 2199 [Protein] 557aa [Translation ID] ENSP00000419673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EX44 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-012 [Transcript ID] ENST00000436461 [bp] 1614 [Protein] 459aa [Translation ID] ENSP00000411476 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J813 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-017 [Transcript ID] ENST00000454108 [bp] 558 [Protein] 72aa [Translation ID] ENSP00000401988 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JE79 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-027 [Transcript ID] ENST00000445569 [bp] 525 [Protein] 132aa [Translation ID] ENSP00000390926 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JEK3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-020 [Transcript ID] ENST00000435928 [bp] 458 [Protein] 72aa [Translation ID] ENSP00000416611 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9JE79 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-009 [Transcript ID] ENST00000443197 [bp] 4173 [Protein] 536aa [Translation ID] ENSP00000407522 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PGZ1 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-004 [Transcript ID] ENST00000430085 [bp] 1938 [Protein] 85aa [Translation ID] ENSP00000394715 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WE61 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-015 [Transcript ID] ENST00000466704 [bp] 903 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-021 [Transcript ID] ENST00000496024 [bp] 557 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-026 [Transcript ID] ENST00000489019 [bp] 422 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-023 [Transcript ID] ENST00000478075 [bp] 193 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-016 [Transcript ID] ENST00000462181 [bp] 188 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-008 [Transcript ID] ENST00000482470 [bp] 3941 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-019 [Transcript ID] ENST00000475772 [bp] 753 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-024 [Transcript ID] ENST00000472096 [bp] 651 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-028 [Transcript ID] ENST00000480638 [bp] 560 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-018 [Transcript ID] ENST00000498254 [bp] 443 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
0f74c4f5__Gene__CALD1__ENSG00000122786___Flags | [Name] CALD1-025 [Transcript ID] ENST00000473714 [bp] 230 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-201 [Transcript ID] ENST00000393118 [bp] 4281 [Protein] 558aa [Translation ID] ENSP00000376826 [CCDS] CCDS47716 [UniProt] Q05682 [RefSeq] NM_033139 NP_149130 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-001 [Transcript ID] ENST00000361901 [bp] 4114 [Protein] 538aa [Translation ID] ENSP00000354513 [CCDS] CCDS5834 [UniProt] Q05682 [RefSeq] NM_004342 NP_004333 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-005 [Transcript ID] ENST00000361675 [bp] 3612 [Protein] 793aa [Translation ID] ENSP00000354826 [CCDS] CCDS5835 [UniProt] Q05682 [RefSeq] NM_033138 NP_149129 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-003 [Transcript ID] ENST00000422748 [bp] 2665 [Protein] 563aa [Translation ID] ENSP00000395710 [CCDS] CCDS5836 [UniProt] Q05682 [RefSeq] NM_033157 NP_149347 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-010 [Transcript ID] ENST00000424922 [bp] 2124 [Protein] 532aa [Translation ID] ENSP00000393621 [CCDS] CCDS47717 [UniProt] Q05682 [RefSeq] NM_033140 NP_149131 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-002 [Transcript ID] ENST00000417172 [bp] 1915 [Protein] 538aa [Translation ID] ENSP00000398826 [CCDS] CCDS5834 [UniProt] Q05682 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-029 [Transcript ID] ENST00000495522 [bp] 2199 [Protein] 557aa [Translation ID] ENSP00000419673 [CCDS] - [UniProt] E7EX44 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-012 [Transcript ID] ENST00000436461 [bp] 1614 [Protein] 459aa [Translation ID] ENSP00000411476 [CCDS] - [UniProt] C9J813 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-017 [Transcript ID] ENST00000454108 [bp] 558 [Protein] 72aa [Translation ID] ENSP00000401988 [CCDS] - [UniProt] C9JE79 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-027 [Transcript ID] ENST00000445569 [bp] 525 [Protein] 132aa [Translation ID] ENSP00000390926 [CCDS] - [UniProt] C9JEK3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-020 [Transcript ID] ENST00000435928 [bp] 458 [Protein] 72aa [Translation ID] ENSP00000416611 [CCDS] - [UniProt] C9JE79 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-009 [Transcript ID] ENST00000443197 [bp] 4173 [Protein] 536aa [Translation ID] ENSP00000407522 [CCDS] - [UniProt] E9PGZ1 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-004 [Transcript ID] ENST00000430085 [bp] 1938 [Protein] 85aa [Translation ID] ENSP00000394715 [CCDS] - [UniProt] F8WE61 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-015 [Transcript ID] ENST00000466704 [bp] 903 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
39b60304__Gene__CALD1__ENSG00000122786___Biotype | [Name] CALD1-021 [Transcript ID] ENST00000496024 [bp] 557 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Gene: CALD1 (ENSG00000122786) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000122786;r=7:134744252-134970728 | 50/1438042985647.51_20150728002305-00138-ip-10-236-191-2_430229757_0.json |
Subsets and Splits