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2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-053 [Transcript ID] ENST00000533845 [bp] 376 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-012 [Transcript ID] ENST00000460027 [bp] 368 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-015 [Transcript ID] ENST00000494734 [bp] 305 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-026 [Transcript ID] ENST00000526182 [bp] 277 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-035 [Transcript ID] ENST00000612094 [bp] 3451 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-010 [Transcript ID] ENST00000479369 [bp] 2548 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-040 [Transcript ID] ENST00000617031 [bp] 1542 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-014 [Transcript ID] ENST00000464924 [bp] 840 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-016 [Transcript ID] ENST00000481227 [bp] 802 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-055 [Transcript ID] ENST00000496263 [bp] 687 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-063 [Transcript ID] ENST00000533768 [bp] 635 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-022 [Transcript ID] ENST00000477941 [bp] 586 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-062 [Transcript ID] ENST00000534367 [bp] 578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-061 [Transcript ID] ENST00000534466 [bp] 565 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
2bb8c62d__PDE4DIP_007__ENST00000369347___Biotype | [Name] PDE4DIP-058 [Transcript ID] ENST00000527901 [bp] 561 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: PDE4DIP-007 (ENST00000369347) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000178104;r=1:148889576-148932729;t=ENST00000369347 | 50/1438042991951.97_20150728002311-00094-ip-10-236-191-2_422610452_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-001 [Transcript ID] ENST00000404625 [bp] 1527 [Protein] 212aa [Translation ID] ENSP00000385675 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5375 [UniProt] P05231 Q75MH2 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-201 [Transcript ID] ENST00000258743 [bp] 1182 [Protein] 212aa [Translation ID] ENSP00000258743 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS5375 [UniProt] P05231 Q75MH2 [RefSeq] NM_000600 NP_000591 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-004 [Transcript ID] ENST00000407492 [bp] 926 [Protein] 136aa [Translation ID] ENSP00000385043 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MC21 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-005 [Transcript ID] ENST00000401630 [bp] 765 [Protein] 189aa [Translation ID] ENSP00000384928 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MCZ3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-006 [Transcript ID] ENST00000406575 [bp] 649 [Protein] 198aa [Translation ID] ENSP00000385227 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MC14 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-002 [Transcript ID] ENST00000426291 [bp] 574 [Protein] 152aa [Translation ID] ENSP00000405150 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J5B0 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-003 [Transcript ID] ENST00000401651 [bp] 539 [Protein] 122aa [Translation ID] ENSP00000385718 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B4DNV3 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-008 [Transcript ID] ENST00000485300 [bp] 985 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
a5c8899f_ipt__IL6_006__ENST00000406575___Flags | [Name] IL6-007 [Transcript ID] ENST00000464710 [bp] 582 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: IL6-006 (ENST00000406575) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000136244;r=7:22727240-22729815;t=ENST00000406575 | 50/1438042991951.97_20150728002311-00230-ip-10-236-191-2_418563584_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-001 [Transcript ID] ENST00000409134 [bp] 4964 [Protein] 539aa [Translation ID] ENSP00000387123 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4137 [UniProt] P49419 [RefSeq] NM_001182 NM_001201377 NP_001173 NP_001188306 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-201 [Transcript ID] ENST00000447989 [bp] 4742 [Protein] 502aa [Translation ID] ENSP00000414132 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56380 [UniProt] P49419 [RefSeq] NM_001202404 NP_001189333 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-017 [Transcript ID] ENST00000553117 [bp] 1935 [Protein] 475aa [Translation ID] ENSP00000448593 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VS02 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-006 [Transcript ID] ENST00000413020 [bp] 970 [Protein] 294aa [Translation ID] ENSP00000487936 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-016 [Transcript ID] ENST00000510111 [bp] 719 [Protein] 240aa [Translation ID] ENSP00000447388 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YHM6 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-015 [Transcript ID] ENST00000509270 [bp] 446 [Protein] 141aa [Translation ID] ENSP00000449318 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] F8VVF2 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-004 [Transcript ID] ENST00000458249 [bp] 1031 [Protein] 97aa [Translation ID] ENSP00000403929 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WD33 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-013 [Transcript ID] ENST00000503281 [bp] 906 [Protein] 41aa [Translation ID] ENSP00000488032 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] - [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-002 [Transcript ID] ENST00000412186 [bp] 586 [Protein] 77aa [Translation ID] ENSP00000414536 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F8WDY6 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-014 [Transcript ID] ENST00000509459 [bp] 526 [Protein] 27aa [Translation ID] ENSP00000487998 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] - [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-005 [Transcript ID] ENST00000433026 [bp] 615 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-003 [Transcript ID] ENST00000479989 [bp] 576 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-012 [Transcript ID] ENST00000511266 [bp] 509 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-010 [Transcript ID] ENST00000497231 [bp] 2038 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-008 [Transcript ID] ENST00000485852 [bp] 593 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
89432b80__ALDH7A1_012__ENST00000511266___Flags | [Name] ALDH7A1-009 [Transcript ID] ENST00000476328 [bp] 484 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-001 [Transcript ID] ENST00000293288 [bp] 1358 [Protein] 218aa [Translation ID] ENSP00000293288 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12744 [UniProt] Q07812 [RefSeq] NM_004324 NP_004315 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-006 [Transcript ID] ENST00000345358 [bp] 793 [Protein] 192aa [Translation ID] ENSP00000263262 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12742 [UniProt] Q07812 [RefSeq] NM_001291428 NM_138761 NP_001278357 NP_620116 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-003 [Transcript ID] ENST00000415969 [bp] 540 [Protein] 179aa [Translation ID] ENSP00000389971 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12745 [UniProt] Q07812 [RefSeq] NM_138764 NP_620119 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-202 [Transcript ID] ENST00000539787 [bp] 458 [Protein] 140aa [Translation ID] ENSP00000441413 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS77327 [UniProt] I6LPK7 [RefSeq] NM_001291430 NP_001278359 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-005 [Transcript ID] ENST00000354470 [bp] 433 [Protein] 143aa [Translation ID] ENSP00000346461 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12743 [UniProt] Q07812 [RefSeq] NM_138763 NP_620118 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-201 [Transcript ID] ENST00000391871 [bp] 687 [Protein] 175aa [Translation ID] ENSP00000375744 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K4JQN1 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-004 [Transcript ID] ENST00000506183 [bp] 383 [Protein] 126aa [Translation ID] ENSP00000426184 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YA56 [RefSeq] NP_001278360 [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-002 [Transcript ID] ENST00000356483 [bp] 677 [Protein] 164aa [Translation ID] ENSP00000348871 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q07812 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-007 [Transcript ID] ENST00000515540 [bp] 300 [Protein] 41aa [Translation ID] ENSP00000426328 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] Q07812 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-009 [Transcript ID] ENST00000502487 [bp] 1346 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-010 [Transcript ID] ENST00000513217 [bp] 869 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-008 [Transcript ID] ENST00000513545 [bp] 775 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
fa493480____Gene__BAX__ENSG00000087088___Flags | [Name] BAX-012 [Transcript ID] ENST00000503726 [bp] 488 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: BAX (ENSG00000087088) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087088;r=19:48954815-48961798 | 50/1438042991951.97_20150728002311-00151-ip-10-236-191-2_425997921_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-001 [Transcript ID] ENST00000409134 [bp] 4964 [Protein] 539aa [Translation ID] ENSP00000387123 [CCDS] CCDS4137 [UniProt] P49419 [RefSeq] NM_001182 NM_001201377 NP_001173 NP_001188306 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-201 [Transcript ID] ENST00000447989 [bp] 4742 [Protein] 502aa [Translation ID] ENSP00000414132 [CCDS] CCDS56380 [UniProt] P49419 [RefSeq] NM_001202404 NP_001189333 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-017 [Transcript ID] ENST00000553117 [bp] 1935 [Protein] 475aa [Translation ID] ENSP00000448593 [CCDS] - [UniProt] F8VS02 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-006 [Transcript ID] ENST00000413020 [bp] 970 [Protein] 294aa [Translation ID] ENSP00000487936 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-016 [Transcript ID] ENST00000510111 [bp] 719 [Protein] 240aa [Translation ID] ENSP00000447388 [CCDS] - [UniProt] H0YHM6 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-015 [Transcript ID] ENST00000509270 [bp] 446 [Protein] 141aa [Translation ID] ENSP00000449318 [CCDS] - [UniProt] F8VVF2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-004 [Transcript ID] ENST00000458249 [bp] 1031 [Protein] 97aa [Translation ID] ENSP00000403929 [CCDS] - [UniProt] F8WD33 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-013 [Transcript ID] ENST00000503281 [bp] 906 [Protein] 41aa [Translation ID] ENSP00000488032 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-002 [Transcript ID] ENST00000412186 [bp] 586 [Protein] 77aa [Translation ID] ENSP00000414536 [CCDS] - [UniProt] F8WDY6 [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-014 [Transcript ID] ENST00000509459 [bp] 526 [Protein] 27aa [Translation ID] ENSP00000487998 [CCDS] - [UniProt] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-005 [Transcript ID] ENST00000433026 [bp] 615 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-003 [Transcript ID] ENST00000479989 [bp] 576 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-012 [Transcript ID] ENST00000511266 [bp] 509 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-010 [Transcript ID] ENST00000497231 [bp] 2038 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-008 [Transcript ID] ENST00000485852 [bp] 593 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1e625c31__ALDH7A1_012__ENST00000511266___Biotype | [Name] ALDH7A1-009 [Transcript ID] ENST00000476328 [bp] 484 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ALDH7A1-012 (ENST00000511266) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000164904;r=5:125877533-125931110;t=ENST00000511266 | 50/1438042985647.51_20150728002305-00065-ip-10-236-191-2_431825131_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-003 [Transcript ID] ENST00000424301 [bp] 1637 [Protein] 419aa [Translation ID] ENSP00000404203 [CCDS] CCDS4053 [UniProt] A0A024RAK5 P17540 [RefSeq] NM_001825 NP_001816 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-001 [Transcript ID] ENST00000254035 [bp] 1512 [Protein] 419aa [Translation ID] ENSP00000254035 [CCDS] CCDS4053 [UniProt] A0A024RAK5 P17540 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-201 [Transcript ID] ENST00000437669 [bp] 1479 [Protein] 419aa [Translation ID] ENSP00000410289 [CCDS] CCDS4053 [UniProt] A0A024RAK5 P17540 [RefSeq] NM_001099735 NM_001099736 NP_001093205 NP_001093206 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-004 [Transcript ID] ENST00000511719 [bp] 594 [Protein] 170aa [Translation ID] ENSP00000423264 [CCDS] - [UniProt] D6R998 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-007 [Transcript ID] ENST00000505060 [bp] 546 [Protein] 158aa [Translation ID] ENSP00000427635 [CCDS] - [UniProt] D6RHV3 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-009 [Transcript ID] ENST00000505704 [bp] 606 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-006 [Transcript ID] ENST00000515615 [bp] 581 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-005 [Transcript ID] ENST00000513094 [bp] 551 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-013 [Transcript ID] ENST00000514086 [bp] 1277 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-010 [Transcript ID] ENST00000505850 [bp] 707 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-011 [Transcript ID] ENST00000505135 [bp] 670 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
1c78fca8__Gene__CKMT2__ENSG00000131730___Biotype | [Name] CKMT2-008 [Transcript ID] ENST00000515238 [bp] 579 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: CKMT2 (ENSG00000131730) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000131730;r=5:81233285-81266397 | 50/1438042991951.97_20150728002311-00323-ip-10-236-191-2_419994948_0.json |
5d959fed___Gene__NEFM__ENSG00000104722___RefSeq | [Name] NEFM-001 [Transcript ID] ENST00000221166 [bp] 4020 [Protein] 916aa [Translation ID] ENSP00000221166 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6046 [UniProt] P07197 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [RefSeq] | NM_005382 NP_005373 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
5d959fed___Gene__NEFM__ENSG00000104722___RefSeq | [Name] NEFM-002 [Transcript ID] ENST00000433454 [bp] 2519 [Protein] 540aa [Translation ID] ENSP00000412295 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47831 [UniProt] P07197 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [RefSeq] | NM_001105541 NP_001099011 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
5d959fed___Gene__NEFM__ENSG00000104722___RefSeq | [Name] NEFM-201 [Transcript ID] ENST00000437366 [bp] 3148 [Protein] 877aa [Translation ID] ENSP00000410137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ESP9 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
5d959fed___Gene__NEFM__ENSG00000104722___RefSeq | [Name] NEFM-003 [Transcript ID] ENST00000518131 [bp] 2500 [Protein] 698aa [Translation ID] ENSP00000427872 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EMV2 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
5d959fed___Gene__NEFM__ENSG00000104722___RefSeq | [Name] NEFM-004 [Transcript ID] ENST00000521540 [bp] 1885 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
5d959fed___Gene__NEFM__ENSG00000104722___RefSeq | [Name] NEFM-006 [Transcript ID] ENST00000523467 [bp] 582 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
0788e30f___Gene__NEFM__ENSG00000104722___Name | [Transcript ID] ENST00000221166 [bp] 4020 [Protein] 916aa [Translation ID] ENSP00000221166 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6046 [UniProt] P07197 [RefSeq] NM_005382 NP_005373 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Name] | NEFM-001 | [
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[
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Name | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
0788e30f___Gene__NEFM__ENSG00000104722___Name | [Transcript ID] ENST00000433454 [bp] 2519 [Protein] 540aa [Translation ID] ENSP00000412295 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47831 [UniProt] P07197 [RefSeq] NM_001105541 NP_001099011 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Name] | NEFM-002 | [
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[
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Name | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
0788e30f___Gene__NEFM__ENSG00000104722___Name | [Transcript ID] ENST00000437366 [bp] 3148 [Protein] 877aa [Translation ID] ENSP00000410137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ESP9 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | NEFM-201 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Name | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
0788e30f___Gene__NEFM__ENSG00000104722___Name | [Transcript ID] ENST00000518131 [bp] 2500 [Protein] 698aa [Translation ID] ENSP00000427872 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EMV2 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | NEFM-003 | [
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[
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Name | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
0788e30f___Gene__NEFM__ENSG00000104722___Name | [Transcript ID] ENST00000521540 [bp] 1885 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | NEFM-004 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Name | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
0788e30f___Gene__NEFM__ENSG00000104722___Name | [Transcript ID] ENST00000523467 [bp] 582 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | NEFM-006 | [
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] | Ensembl genome browser 81: Homo sapiens - Summary - Gene: NEFM (ENSG00000104722) | Name | http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000104722;r=8:24913012-24919098 | 50/1438042991951.97_20150728002311-00053-ip-10-236-191-2_429292732_0.json |
9cb8e3d0_t__RAD51_003__ENST00000557850___UniProt | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
9cb8e3d0_t__RAD51_003__ENST00000557850___UniProt | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
9cb8e3d0_t__RAD51_003__ENST00000557850___UniProt | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
9cb8e3d0_t__RAD51_003__ENST00000557850___UniProt | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
9cb8e3d0_t__RAD51_003__ENST00000557850___UniProt | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q06609 | [
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
9cb8e3d0_t__RAD51_003__ENST00000557850___UniProt | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [UniProt] | Q9NZG9 | [
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[
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]
] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
9cb8e3d0_t__RAD51_003__ENST00000557850___UniProt | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [UniProt] | E9PNT5 | [
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[
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] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | UniProt | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
Subsets and Splits