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858c69c2_pt__ADSL_002__ENST00000342312___Flags | [Name] ADSL-006 [Transcript ID] ENST00000480775 [bp] 713 [Protein] 78aa [Translation ID] ENSP00000485462 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A096LP92 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
858c69c2_pt__ADSL_002__ENST00000342312___Flags | [Name] ADSL-013 [Transcript ID] ENST00000624474 [bp] 678 [Protein] 164aa [Translation ID] ENSP00000485286 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] A0A096LNY4 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
858c69c2_pt__ADSL_002__ENST00000342312___Flags | [Name] ADSL-005 [Transcript ID] ENST00000477111 [bp] 826 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
858c69c2_pt__ADSL_002__ENST00000342312___Flags | [Name] ADSL-003 [Transcript ID] ENST00000466863 [bp] 686 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
858c69c2_pt__ADSL_002__ENST00000342312___Flags | [Name] ADSL-015 [Transcript ID] ENST00000623387 [bp] 620 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-001 [Transcript ID] ENST00000382872 [bp] 6617 [Protein] 648aa [Translation ID] ENSP00000372325 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56619 [RefSeq] NM_001206850 NP_001193779 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt] | Q8NFZ3 | [
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8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-005 [Transcript ID] ENST00000339174 [bp] 5310 [Protein] 816aa [Translation ID] ENSP00000342535 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14788 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1PRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | A0A024R9E7 Q8NFZ3 | [
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8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-002 [Transcript ID] ENST00000355905 [bp] 5167 [Protein] 816aa [Translation ID] ENSP00000348169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14788 [RefSeq] NM_014893 NP_055708 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1PRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [UniProt] | A0A024R9E7 Q8NFZ3 | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-201 [Transcript ID] ENST00000297967 [bp] 882 [Protein] 256aa [Translation ID] ENSP00000297967 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55553 [RefSeq] NM_001164238 NP_001157710 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [UniProt] | Q8NFZ3 | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-003 [Transcript ID] ENST00000382868 [bp] 5338 [Protein] 873aa [Translation ID] ENSP00000372320 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt] | A6NMU8 | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-006 [Transcript ID] ENST00000413217 [bp] 722 [Protein] 236aa [Translation ID] ENSP00000412638 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt] | H0Y7G6 | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-004 [Transcript ID] ENST00000476359 [bp] 5460 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [UniProt] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-007 [Transcript ID] ENST00000471252 [bp] 793 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
8e8bb045_Gene__NLGN4Y__ENSG00000165246___UniProt | [Name] NLGN4Y-008 [Transcript ID] ENST00000481089 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [UniProt] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | UniProt | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [CCDS] CCDS10062 [UniProt] Q06609 [RefSeq] NM_002875 NP_002866 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [CCDS] CCDS53932 [UniProt] Q06609 [RefSeq] NM_001164270 NP_001157742 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_001164269 NP_001157741 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_133487 NP_597994 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
bbe6f40c_t__RAD51_003__ENST00000557850___Biotype | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: RAD51-003 (ENST00000557850) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000051180;r=15:40987370-41023788;t=ENST00000557850 | 50/1438042991951.97_20150728002311-00174-ip-10-236-191-2_425372330_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-001 [Transcript ID] ENST00000303562 [bp] 2158 [Protein] 380aa [Translation ID] ENSP00000306245 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS9841 [UniProt] P01100 Q6FG41 [RefSeq] NM_005252 NP_005243 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-004 [Transcript ID] ENST00000555686 [bp] 1496 [Protein] 266aa [Translation ID] ENSP00000452590 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P01100 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-002 [Transcript ID] ENST00000535987 [bp] 1402 [Protein] 344aa [Translation ID] ENSP00000442268 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P01100 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-011 [Transcript ID] ENST00000555347 [bp] 1280 [Protein] 232aa [Translation ID] ENSP00000450886 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V2V7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-009 [Transcript ID] ENST00000555672 [bp] 834 [Protein] 142aa [Translation ID] ENSP00000452440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5N7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-005 [Transcript ID] ENST00000554617 [bp] 796 [Protein] 170aa [Translation ID] ENSP00000450519 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V289 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-008 [Transcript ID] ENST00000555242 [bp] 629 [Protein] 176aa [Translation ID] ENSP00000452386 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5J9 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-007 [Transcript ID] ENST00000554212 [bp] 567 [Protein] 137aa [Translation ID] ENSP00000452443 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] G3V5N9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-010 [Transcript ID] ENST00000557139 [bp] 249 [Protein] 83aa [Translation ID] ENSP00000451786 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YJM3 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
d009f427_ipt__FOS_009__ENST00000555672___Flags | [Name] FOS-006 [Transcript ID] ENST00000556324 [bp] 596 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: FOS-009 (ENST00000555672) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000170345;r=14:75745477-75748933;t=ENST00000555672 | 50/1438042991951.97_20150728002311-00226-ip-10-236-191-2_418062893_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-005 [Transcript ID] ENST00000513407 [bp] 2276 [Protein] 164aa [Translation ID] ENSP00000475512 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] NM_001285986 NP_001272915 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-002 [Transcript ID] ENST00000471529 [bp] 1723 [Protein] 164aa [Translation ID] ENSP00000425083 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-202 [Transcript ID] ENST00000620031 [bp] 1578 [Protein] 190aa [Translation ID] ENSP00000484778 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] NM_001173531 NM_001285987 NM_203289 NP_001167002 NP_001272916 NP_976034 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-001 [Transcript ID] ENST00000259915 [bp] 1420 [Protein] 360aa [Translation ID] ENSP00000259915 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34391 [UniProt] D2IYK3 Q01860 [RefSeq] NM_002701 NP_002692 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-007 [Transcript ID] ENST00000606567 [bp] 1236 [Protein] 190aa [Translation ID] ENSP00000475880 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-006 [Transcript ID] ENST00000512818 [bp] 1233 [Protein] 164aa [Translation ID] ENSP00000425479 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-004 [Transcript ID] ENST00000441888 [bp] 1055 [Protein] 164aa [Translation ID] ENSP00000389359 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-201 [Transcript ID] ENST00000619340 [bp] 1084 [Protein] 186aa [Translation ID] ENSP00000481679 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WYB7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
6ffabe1b_Gene__POU5F1__ENSG00000204531___Flags | [Name] POU5F1-003 [Transcript ID] ENST00000461401 [bp] 791 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Variation image - Gene: POU5F1 (ENSG00000204531) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Variation_Gene/Image?g=ENSG00000204531;r=6:31132119-31148508 | 50/1438042985647.51_20150728002305-00264-ip-10-236-191-2_429094374_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-001 [Transcript ID] ENST00000313654 [bp] 10661 [Protein] 3333aa [Translation ID] ENSP00000324532 [CCDS] CCDS42419 [UniProt] Q16787 [RefSeq] NM_198129 NP_937762 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-003 [Transcript ID] ENST00000399516 [bp] 9834 [Protein] 3277aa [Translation ID] ENSP00000382432 [CCDS] CCDS45838 [UniProt] A0A0A0MSA0 [RefSeq] NM_001127717 NP_001121189 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-002 [Transcript ID] ENST00000269217 [bp] 5671 [Protein] 1724aa [Translation ID] ENSP00000269217 [CCDS] CCDS11880 [UniProt] A0A0A6YYF2 [RefSeq] NM_000227 NP_000218 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-004 [Transcript ID] ENST00000587184 [bp] 5007 [Protein] 1668aa [Translation ID] ENSP00000466557 [CCDS] CCDS59307 [UniProt] A0A0A0MTS5 [RefSeq] NM_001127718 NP_001121190 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-011 [Transcript ID] ENST00000586751 [bp] 3494 [Protein] 1147aa [Translation ID] ENSP00000464836 [CCDS] - [UniProt] K7EIP4 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-010 [Transcript ID] ENST00000588164 [bp] 771 [Protein] 94aa [Translation ID] ENSP00000467473 [CCDS] - [UniProt] K7EPP3 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-016 [Transcript ID] ENST00000592519 [bp] 590 [Protein] 59aa [Translation ID] ENSP00000467662 [CCDS] - [UniProt] K7EQ42 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-012 [Transcript ID] ENST00000588004 [bp] 554 [Protein] 134aa [Translation ID] ENSP00000468315 [CCDS] - [UniProt] K7ERM0 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-014 [Transcript ID] ENST00000590104 [bp] 462 [Protein] 37aa [Translation ID] ENSP00000466658 [CCDS] - [UniProt] K7EMU9 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-005 [Transcript ID] ENST00000585600 [bp] 1815 [Protein] 576aa [Translation ID] ENSP00000468316 [CCDS] - [UniProt] A0A075B783 [RefSeq] NR_130106 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Non stop decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-006 [Transcript ID] ENST00000588770 [bp] 4921 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-007 [Transcript ID] ENST00000586709 [bp] 637 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-015 [Transcript ID] ENST00000591749 [bp] 557 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
8a767808_t__LAMA3_005__ENST00000585600___Biotype | [Name] LAMA3-008 [Transcript ID] ENST00000592442 [bp] 473 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LAMA3-005 (ENST00000585600) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000053747;r=18:23689598-23796148;t=ENST00000585600 | 50/1438042985647.51_20150728002305-00341-ip-10-236-191-2_423592969_0.json |
37314732__Kras_005__ENSMUST00000123972___Name | [Transcript ID] ENSMUST00000032399 [bp] 4678 [Protein] 188aa [Translation ID] ENSMUSP00000032399 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS20693 [UniProt] P32883 Q5J7N1 [RefSeq] NM_021284 NP_067259 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 [Name] | Kras-001 | [
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] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Name | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
37314732__Kras_005__ENSMUST00000123972___Name | [Transcript ID] ENSMUST00000111710 [bp] 1194 [Protein] 189aa [Translation ID] ENSMUSP00000107339 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P32883 Q0VDV7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Name] | Kras-002 | [
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] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Name | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
37314732__Kras_005__ENSMUST00000123972___Name | [Transcript ID] ENSMUST00000155145 [bp] 381 [Protein] 34aa [Translation ID] ENSMUSP00000118251 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B2KGV5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | Kras-003 | [
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[
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[
"K",
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] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Name | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
37314732__Kras_005__ENSMUST00000123972___Name | [Transcript ID] ENSMUST00000156486 [bp] 832 [Protein] 40aa [Translation ID] ENSMUSP00000119414 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9Q8V2 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | Kras-006 | [
[
"K",
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"a",
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"-",
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[
"K",
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[
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[
"K",
"r",
"a",
"s",
"-",
"0",
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"4"
]
] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Name | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
37314732__Kras_005__ENSMUST00000123972___Name | [Transcript ID] ENSMUST00000123972 [bp] 816 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Name] | Kras-005 | [
[
"K",
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"-",
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[
"K",
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[
"K",
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"s",
"-",
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"4"
]
] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Name | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
37314732__Kras_005__ENSMUST00000123972___Name | [Transcript ID] ENSMUST00000149314 [bp] 599 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Name] | Kras-004 | [
[
"K",
"r",
"a",
"s",
"-",
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"0",
"1"
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[
"K",
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[
"K",
"r",
"a",
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"4"
]
] | Ensembl genome browser 81: Mus musculus - Summary - Transcript: Kras-005 (ENSMUST00000123972) | Name | http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000030265;r=6:145216699-145250239;t=ENSMUST00000123972 | 50/1438042991951.97_20150728002311-00317-ip-10-236-191-2_427356897_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-005 [Transcript ID] ENST00000452699 [bp] 3981 [Protein] 1175aa [Translation ID] ENSP00000413307 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44073 [UniProt] Q9NQ11 [RefSeq] NM_001141973 NP_001135445 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-001 [Transcript ID] ENST00000326735 [bp] 3840 [Protein] 1180aa [Translation ID] ENSP00000327214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS175 [UniProt] Q9NQ11 [RefSeq] NM_022089 NP_071372 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-002 [Transcript ID] ENST00000341676 [bp] 3681 [Protein] 1158aa [Translation ID] ENSP00000341115 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS44072 [UniProt] Q9NQ11 [RefSeq] NM_001141974 NP_001135446 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-201 [Transcript ID] ENST00000617114 [bp] 1723 [Protein] 228aa [Translation ID] ENSP00000478781 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WUM9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-007 [Transcript ID] ENST00000502418 [bp] 1201 [Protein] 398aa [Translation ID] ENSP00000423065 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y953 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-009 [Transcript ID] ENST00000510069 [bp] 962 [Protein] 321aa [Translation ID] ENSP00000424313 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K0 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-014 [Transcript ID] ENST00000503552 [bp] 774 [Protein] 258aa [Translation ID] ENSP00000421126 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8I1 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-012 [Transcript ID] ENST00000506174 [bp] 573 [Protein] 191aa [Translation ID] ENSP00000424393 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9K4 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-010 [Transcript ID] ENST00000509619 [bp] 570 [Protein] 191aa [Translation ID] ENSP00000422668 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8Z6 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-011 [Transcript ID] ENST00000511957 [bp] 569 [Protein] 190aa [Translation ID] ENSP00000427241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YAI7 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-008 [Transcript ID] ENST00000508222 [bp] 562 [Protein] 188aa [Translation ID] ENSP00000422227 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8V5 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-004 [Transcript ID] ENST00000466561 [bp] 1851 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-003 [Transcript ID] ENST00000463860 [bp] 1639 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-006 [Transcript ID] ENST00000502860 [bp] 687 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
de9ae61c__ATP13A2_002__ENST00000341676___Flags | [Name] ATP13A2-013 [Transcript ID] ENST00000509392 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - GO graph - Transcript: ATP13A2-002 (ENST00000341676) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000159363;r=1:17312453-17338410;t=ENST00000341676 | 50/1438042985647.51_20150728002305-00332-ip-10-236-191-2_441028674_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-001 [Transcript ID] ENST00000382872 [bp] 6617 [Protein] 648aa [Translation ID] ENSP00000372325 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56619 [UniProt] Q8NFZ3 [RefSeq] NM_001206850 NP_001193779 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-005 [Transcript ID] ENST00000339174 [bp] 5310 [Protein] 816aa [Translation ID] ENSP00000342535 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14788 [UniProt] A0A024R9E7 Q8NFZ3 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1PRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-002 [Transcript ID] ENST00000355905 [bp] 5167 [Protein] 816aa [Translation ID] ENSP00000348169 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14788 [UniProt] A0A024R9E7 Q8NFZ3 [RefSeq] NM_014893 NP_055708 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1PRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-201 [Transcript ID] ENST00000297967 [bp] 882 [Protein] 256aa [Translation ID] ENSP00000297967 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS55553 [UniProt] Q8NFZ3 [RefSeq] NM_001164238 NP_001157710 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-003 [Transcript ID] ENST00000382868 [bp] 5338 [Protein] 873aa [Translation ID] ENSP00000372320 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A6NMU8 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-006 [Transcript ID] ENST00000413217 [bp] 722 [Protein] 236aa [Translation ID] ENSP00000412638 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y7G6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-004 [Transcript ID] ENST00000476359 [bp] 5460 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-007 [Transcript ID] ENST00000471252 [bp] 793 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
836a1ccf_Gene__NLGN4Y__ENSG00000165246___Flags | [Name] NLGN4Y-008 [Transcript ID] ENST00000481089 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: NLGN4Y (ENSG00000165246) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000165246;r=Y:14522638-14845650 | 50/1438042991951.97_20150728002311-00275-ip-10-236-191-2_428486327_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-001 [Transcript ID] ENST00000623063 [bp] 4359 [Protein] 484aa [Translation ID] ENSP00000485525 [CCDS] CCDS14001 [UniProt] P30566 X5D8S6 [RefSeq] NM_000026 NP_000017 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-002 [Transcript ID] ENST00000342312 [bp] 1808 [Protein] 425aa [Translation ID] ENSP00000341429 [CCDS] CCDS46714 [UniProt] P30566 [RefSeq] NM_001123378 NP_001116850 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-017 [Transcript ID] ENST00000216194 [bp] 1620 [Protein] 498aa [Translation ID] ENSP00000216194 [CCDS] - [UniProt] A0A0A6YY92 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-014 [Transcript ID] ENST00000625194 [bp] 1079 [Protein] 360aa [Translation ID] ENSP00000485289 [CCDS] - [UniProt] A0A096LNY6 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-010 [Transcript ID] ENST00000623632 [bp] 847 [Protein] 262aa [Translation ID] ENSP00000485288 [CCDS] - [UniProt] A0A096LNY5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-016 [Transcript ID] ENST00000624027 [bp] 732 [Protein] 81aa [Translation ID] ENSP00000485202 [CCDS] - [UniProt] A0A096LNT0 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-009 [Transcript ID] ENST00000423176 [bp] 728 [Protein] 102aa [Translation ID] ENSP00000485443 [CCDS] - [UniProt] A0A096LP76 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-011 [Transcript ID] ENST00000623978 [bp] 712 [Protein] 134aa [Translation ID] ENSP00000485477 [CCDS] - [UniProt] A0A096LPA2 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-012 [Transcript ID] ENST00000623287 [bp] 856 [Protein] 149aa [Translation ID] ENSP00000485437 [CCDS] - [UniProt] A0A096LP72 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-007 [Transcript ID] ENST00000624503 [bp] 754 [Protein] 127aa [Translation ID] ENSP00000485073 [CCDS] - [UniProt] B4DEP1 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-006 [Transcript ID] ENST00000480775 [bp] 713 [Protein] 78aa [Translation ID] ENSP00000485462 [CCDS] - [UniProt] A0A096LP92 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-013 [Transcript ID] ENST00000624474 [bp] 678 [Protein] 164aa [Translation ID] ENSP00000485286 [CCDS] - [UniProt] A0A096LNY4 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
0bb43e1b_pt__ADSL_002__ENST00000342312___Biotype | [Name] ADSL-005 [Transcript ID] ENST00000477111 [bp] 826 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: ADSL-002 (ENST00000342312) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000239900;r=22:40346503-40366996;t=ENST00000342312 | 50/1438042985647.51_20150728002305-00120-ip-10-236-191-2_441912860_0.json |
Subsets and Splits