metadata

license: cc-by-nc-sa-4.0
base_model: InstaDeepAI/nucleotide-transformer-v2-100m-multi-species
tags:
  - generated_from_trainer
metrics:
  - precision
  - recall
  - accuracy
model-index:
  - name: >-
      nucleotide-transformer-v2-100m-multi-species_ft_BioS45_1kbpHG19_DHSs_H3K27AC
    results: []

nucleotide-transformer-v2-100m-multi-species_ft_BioS45_1kbpHG19_DHSs_H3K27AC

This model is a fine-tuned version of InstaDeepAI/nucleotide-transformer-v2-100m-multi-species on the None dataset. It achieves the following results on the evaluation set:

Loss: 0.6023
F1 Score: 0.8516
Precision: 0.8469
Recall: 0.8565
Accuracy: 0.8443
Auc: 0.9080
Prc: 0.8870

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

learning_rate: 1e-05
train_batch_size: 8
eval_batch_size: 8
seed: 42
optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
lr_scheduler_type: linear
num_epochs: 20
mixed_precision_training: Native AMP

Training results

Training Loss	Epoch	Step	Validation Loss	F1 Score	Precision	Recall	Accuracy	Auc	Prc
0.5688	0.2103	500	0.4834	0.7745	0.8198	0.7339	0.7770	0.8595	0.8533
0.465	0.4207	1000	0.4150	0.8388	0.8241	0.8540	0.8288	0.8941	0.8918
0.4161	0.6310	1500	0.3880	0.8466	0.7966	0.9032	0.8292	0.9092	0.9071
0.4113	0.8414	2000	0.3799	0.8541	0.8270	0.8831	0.8427	0.9102	0.9056
0.3853	1.0517	2500	0.4211	0.8485	0.7878	0.9194	0.8288	0.9122	0.9052
0.3461	1.2621	3000	0.4359	0.8510	0.8199	0.8847	0.8385	0.9117	0.8991
0.3408	1.4724	3500	0.3996	0.8563	0.8179	0.8984	0.8427	0.9175	0.9079
0.3354	1.6828	4000	0.4692	0.8260	0.8670	0.7887	0.8267	0.9122	0.9031
0.3392	1.8931	4500	0.4410	0.8544	0.7992	0.9177	0.8368	0.9120	0.9078
0.287	2.1035	5000	0.6023	0.8516	0.8469	0.8565	0.8443	0.9080	0.8870

Framework versions

Transformers 4.42.3
Pytorch 2.3.0+cu121
Datasets 2.18.0
Tokenizers 0.19.0