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width : 140 | width : 140, taxonId : this.taxonId | initComponent : function() { if (this.annotationGrid.editable && !this.saveHandler) { this.saveHandler = CharacteristicBrowserController.updateCharacteristics; } var charComboOpts = { emptyText : 'Enter term', width : 140 }; if (this.charComboWidth) { charComboOpts.width = this.charComboWidth; } var mgedComboOpts = { emptyText : "Select a category", width : 130 }; if (this.mgedComboWidth) { mgedComboOpts.width = this.mgedComboWidth; } if (this.mgedTermKey) { mgedComboOpts.termKey = this.mgedTermKey; } this.charCombo = new Gemma.CharacteristicCombo(charComboOpts); this.mgedCombo = new Gemma.MGEDCombo(mgedComboOpts); this.mgedCombo.on("select", function(combo, record, index) { this.charCombo.setCategory(record.data.term, record.data.uri); this.createButton.enable(); }, this); this.descriptionField = new Ext.form.TextField({ allowBlank : true, invalidText : "Enter a description", blankText : "Add a simple description", emptyText : "Description", width : 75 }); if (this.createHandler) { this.createButton = new Ext.Toolbar.Button({ text : "create", tooltip : "Adds the new annotation", disabled : true, handler : function() { var characteristic = this.charCombo.getCharacteristic(); if (this.addDescription) { characteristic.description = this.descriptionField.getValue(); } this.annotationGrid.loadMask.show(); this.createHandler(characteristic, this.annotationGrid.refresh.createDelegate(this.annotationGrid)); this.charCombo.reset(); this.descriptionField.reset(); }, scope : this }); } if (this.deleteHandler) { this.deleteButton = new Ext.Toolbar.Button({ text : "delete", tooltip : "Removes the selected annotation", disabled : true, handler : function() { this.deleteButton.disable(); this.annotationGrid.loadMask.show(); this.deleteHandler(this.annotationGrid.getSelectedIds(), this.annotationGrid.refresh .createDelegate(this.annotationGrid)); }, scope : this }); } if (this.saveHandler) { this.saveButton = new Ext.Toolbar.Button({ text : "save", tooltip : "Saves the updated annotations", disabled : true, handler : function() { this.annotationGrid.loadMask.show(); this.saveHandler(this.annotationGrid.getEditedCharacteristics(), this.annotationGrid.refresh.createDelegate(this.annotationGrid)); this.saveButton.disable(); }, scope : this }); this.annotationGrid.on("afteredit", function(model) { this.saveButton.enable(); }.createDelegate(this)); } Gemma.AnnotationToolBar.superclass.initComponent.call(this); }, |
emptyText : 'Filter', tooltip : "Text typed here will ", | emptyText : 'Search', tooltip : "Text typed here will act as a filter.", | initComponent : function() { this.searchInGridField = new Ext.form.TextField({ enableKeyEvents : true, emptyText : 'Filter', tooltip : "Text typed here will ", listeners : { "keyup" : { fn : this.searchForText.createDelegate(this), scope : this, options : { delay : 100 } } } }); Ext.apply(this, { tbar : new Ext.Toolbar({ items : [{ xtype : 'button', minWidth : 20, cls : 'x-btn-icon', icon : '/Gemma/images/icons/arrow_refresh_small.png', handler : this.refresh, tooltip : "Refresh the table", scope : this }, '->', { xtype : 'button', handler : this.clearFilter.createDelegate(this), tooltip : "Show all", scope : this, cls : 'x-btn-text', text : 'Reset filter' }, ' ', this.searchInGridField] }) }); Gemma.EEReportPanel.superclass.initComponent.call(this); } |
}, '->', { | }, this.filterCombo, '->', { | initComponent : function() { this.searchInGridField = new Ext.form.TextField({ enableKeyEvents : true, emptyText : 'Filter', tooltip : "Text typed here will ", listeners : { "keyup" : { fn : this.searchForText.createDelegate(this), scope : this, options : { delay : 100 } } } }); Ext.apply(this, { tbar : new Ext.Toolbar({ items : [{ xtype : 'button', minWidth : 20, cls : 'x-btn-icon', icon : '/Gemma/images/icons/arrow_refresh_small.png', handler : this.refresh, tooltip : "Refresh the table", scope : this }, '->', { xtype : 'button', handler : this.clearFilter.createDelegate(this), tooltip : "Show all", scope : this, cls : 'x-btn-text', text : 'Reset filter' }, ' ', this.searchInGridField] }) }); Gemma.EEReportPanel.superclass.initComponent.call(this); } |
width : "100%", | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
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Ext .getCmp('gene-chooser-panel') .loadGenes([]); | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
|
icon : '/Gemma/images/icons/information.png', | icon : Gemma.ICONURL + 'information.png', | initComponent : function() { // has to be done after constructor is done creating the handler... this.geneGroupCombo = new Gemma.GeneGroupCombo({ id : "visGeneGroupCombo", listeners : { 'select' : { fn : function(combo, record, index) { var loadMask = new Ext.LoadMask(this.getEl(), { msg : "Loading Genes for " + record.get('name') + " ..." }); loadMask.show(); this.loadGenes(record.get('geneIds'), function() { loadMask.hide(); }); }, scope : this } } }); Ext.apply(this, { extraButtons : [this.geneGroupCombo, { xtype : 'tbfill' }, new Ext.Button({ id : this.vizButtonId, text : "Show", tooltip : "Click to display data for selected genes, or a 'random' selection of data from this experiment", handler : this.showButHandler, scope : this }), new Ext.Button({ // icon : Gemma.ICONURL + 'information.png', icon : '/Gemma/images/icons/information.png', // text : 'help', tootltip : "Get help", handler : function() { Ext.Msg.show({ title : 'Visualization', msg : 'Use the search fields to find individual genes, or groups of genes. ' + 'Gene group searches work for GO terms and other groups in Gemma. ' + 'To create groups use the <a href=\"/Gemma/geneGroupManager.html\">gene group manager</a>.' + ' Click "show" to view the data for those genes. ' + 'Note that when viewing gene groups, not all genes in the group are necessarily in the data set.', buttons : Ext.Msg.OK, icon : Ext.MessageBox.INFO }); }.createDelegate(this) })] }); Gemma.EEDetailsVisualizationWidget.superclass.initComponent.call(this); this.on('ready', function() { /* * Taxon is passed in during construction. */ var foundTaxon = this.getTopToolbar().taxonCombo.setTaxonByCommonName(this.taxon.commonName); this.getTopToolbar().taxonCombo.hide(); this.geneGroupCombo.taxon = this.taxon; this.taxonChanged(foundTaxon, false); this.getTopToolbar().taxonCombo.disable(false); }); }, |
var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.createGeneGroup( text, geneIds, { | GeneSetController.createGeneGroup(text, [], { | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var groupName = sel.get("entityName"); var processResult = function(btn) { if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
}) | }); | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var groupName = sel.get("entityName"); var processResult = function(btn) { if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { | GeneSetController.updateGeneGroup(rec.data.id, geneIds, { | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var groupName = sel.get("entityName"); var processResult = function(btn) { if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
var groupId = sel.get("entityId"); var groupName = sel.get("entityName"); | var groupId = sel.get("id"); var groupName = sel.get("name"); | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var groupName = sel.get("entityName"); var processResult = function(btn) { if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
SecurityController.deleteGeneGroup(groupId, { | GeneSetController.deleteGeneGroup(groupId, { | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var groupName = sel.get("entityName"); var processResult = function(btn) { if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
}; } | } }; | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var groupName = sel.get("entityName"); var processResult = function(btn) { if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByName), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), | store : new Gemma.GeneGroupStore({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByName), | initComponent : function() { var template = new Ext.XTemplate('<tpl for="."><div style="font-size:11px" class="x-combo-list-item" ext:qtip="{name}({size})"> {name} {description} ({size})</div></tpl>'); Ext.apply(this, { tpl : template, store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByName), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), sortInfo : { field : "name", dir : "ASC" } }) }); Gemma.GeneGroupCombo.superclass.initComponent.call(this); this.addEvents('genechanged'); this.store.on("datachanged", function() { if (this.store.getCount() === 0) { this.fireEvent("invalid", "No matching genes"); } }, this); }, |
GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { | GeneSetController.createGeneGroup(text, [], { callback : function(groupId) { | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); | var genePanel = Ext .getCmp('gene-chooser-panel'); genePanel.currentGroupId = null; genePanel.loadGenes([]); refreshGeneGroupData(groupId); genePanel.getTopToolbar().geneCombo.focus(); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
}, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); | }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
}); | }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
} }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { | var rec = Ext.getCmp("gene-group-panel").getSelectionModel().getSelected(); if (rec) { | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
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var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); | var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); | var geneIds = Ext.getCmp("gene-chooser-panel").getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, rec.data.description, geneIds, { callback : function(d) { Ext.getCmp('gene-chooser-panel').currentGroupId = null; refreshGeneGroupData(); loadMask.hide() }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
}); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
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} | } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
} }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", | handler : function() { | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
handler : function() { | var sel = Ext.getCmp('gene-group-panel').getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); | var processResult = function(btn) { | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
var processResult = function(btn) { | if (btn == 'yes') { | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
if (btn == 'yes') { | var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); | GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext.getCmp('gene-chooser-panel').currentGroupId = null; Ext.getCmp('gene-group-panel').getSelectionModel() .selectFirstRow(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
}); } }; | }; | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION | Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] }, items : [this.geneGroupPanel, this.geneChooserPanel] | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
} }] }, items : [this.geneGroupPanel, this.geneChooserPanel] }); | Gemma.GeneGroupImporter.superclass.initComponent.call(this); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
Gemma.GeneGroupImporter.superclass.initComponent.call(this); | refreshGeneGroupData(); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
refreshGeneGroupData(); } | } | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function( groupname) { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .getTopToolbar().geneCombo .focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, geneIds, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext .getCmp('gene-chooser-panel') .loadGenes([]); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
this.store = new Gemma.VisualizationStore({ | this.store = this.store || new Gemma.VisualizationStore({ | initComponent : function() { if (this.title) { this.originalTitle = this.title; } this.zoomLegendId = 'zoomLegend-' + Ext.id(); this.store = new Gemma.VisualizationStore({ readMethod : this.readMethod }); this.dv = new Gemma.DataVectorThumbnailsView({ tpl : this.tpl, store : this.store, heatmapSortMethod : this.heatmapSortMethod }); this.zoomPanel = new Gemma.VisualizationZoomPanel({ store : this.store, legendDiv : this.zoomLegendId, dv : this.dv, // perhaps give store? heatmapSortMethod : this.heatmapSortMethod }); this.thumbnailPanel = new Ext.Panel({ region : 'west', split : true, width : Gemma.THUMBNAIL_PLOT_SIZE + 50, // little extra.. collapsible : true, title : "Thumbnails", stateful : false, margins : '3 0 3 3', items : this.dv, autoScroll : true, zoomPanel : this.zoomPanel, legendDiv : this.zoomLegendId, hidden : !this.thumbnails, /* * legend div FIXME make this go to the TOP. Might need to make it a separate div in this panel * instead. */ html : { id : this.zoomLegendId, tag : 'div', style : 'width:' + (Gemma.THUMBNAIL_PLOT_SIZE + 50) + 'px;height:' + Gemma.THUMBNAIL_PLOT_SIZE + 'px; float:left;' } }); var items = [this.thumbnailPanel, this.zoomPanel] var browserWarning = ""; if (Ext.isIE) { browserWarning = "<span ext:qtip='Plots use a feature of HTML 5 that runs in IE via emulation unless you have Chrome Frame installed. Firefox, Chrome, Safari and Opera will be faster too.'>" + "Too slow in Explorer? Try <a href='http://www.google.com/chromeframe/' target='_blank'>Chrome Frame</a></span>"; } Ext.apply(this, { items : items, bbar : new Ext.Toolbar({ items : [{ xtype : 'tbbutton', id : this.downloadDataBtnId, icon : '../images/download.gif', cls : 'x-btn-text-icon', hidden : this.downloadLink === undefined, disabled : true, // enabled after load. tooltip : "Download displayed data in a tab-delimited format", handler : this.downloadData.createDelegate(this) }, browserWarning, '->', { xtype : 'tbbutton', // in ext3, use button; tbbutton is deprecated. text : this.showLegend ? "Hide legend" : "Show legend", id : this.toggleLegendBtnId, handler : this.toggleLegend.createDelegate(this), tooltip : "Toggle display of the plot legend", disabled : true, hidden : this.heatmapMode }, // { // xtype : 'tbbutton', // text : this.smoothLineGraphs ? "Unsmooth" : "Smooth", // id : this.smoothBtnId, // handler : this.toggleSmooth.createDelegate(this), // disabled : true, // hidden : true // }, // { xtype : 'tbbutton', text : this.forceFitPlots ? "Expand" : "Fit width", id : this.forceFitBtnId, handler : this.toggleForceFit.createDelegate(this), tooltip : "Toggle forcing of the plot to fit in the width of the window", disabled : true, hidden : false }, { xtype : 'tbbutton', text : this.heatmapMode ? "Switch to line plot" : "Switch to heatmap", id : this.toggleViewBtnId, disabled : true, handler : this.switchView.createDelegate(this) } /* todo: add standarization on/off option. */] }) }); Gemma.VisualizationWithThumbsWindow.superclass.initComponent.call(this); this.dv.getStore().on('load', function(s, records, options) { Ext.getCmp(this.toggleViewBtnId).enable(); // Ext.getCmp(this.smoothBtnId).enable(); Ext.getCmp(this.forceFitBtnId).enable(); Ext.getCmp(this.toggleLegendBtnId).enable(); Ext.getCmp(this.downloadDataBtnId).enable(); // So initial state is sure to be okay, after restore from cookie Ext.getCmp(this.toggleViewBtnId).setText(this.heatmapMode ? "Switch to line plot" : "Switch to heatmap"); Ext.getCmp(this.forceFitBtnId).setText(this.forceFitPlots ? "Expand" : "Fit width"); Ext.getCmp(this.toggleLegendBtnId).setText(this.showLegend ? "Hide legend" : "Show legend"); // Ext.getCmp(this.smoothBtnId).setText(this.smoothLineGraphs ? "Unsmooth" : "Smooth"); if (this.heatmapMode) { // Ext.getCmp(this.smoothBtnId).hide(); Ext.getCmp(this.toggleLegendBtnId).hide(); } else { // Ext.getCmp(this.smoothBtnId).show(); Ext.getCmp(this.toggleLegendBtnId).show(); } }, this); this.dv.getStore().on('loadexception', function() { Ext.Msg.alert("No data", "Sorry, no data were available", function() { this.close(); this.destroy(); }.createDelegate(this)); }, this); this.dv.on('selectionchange', function(dv, selections) { if (selections.length > 0) { var record = dv.getRecord(selections[0]); if (!record || record === undefined) { return; } this.zoom(record); } }.createDelegate(this), this); this.on('staterestore', function(w, state) { this.zoomPanel.heatmapMode = this.heatmapMode; this.zoomPanel.forceFitPlots = this.forceFitPlots; // this.zoomPanel.smoothLineGraphs = this.smoothLineGraphs; this.zoomPanel.showLegend = this.showLegend; this.updateTemplate(); }, this); /* * Tell thumbnails where to put the legend. Currently it's in the body of the graph. */ // this.on('show', function(cmp) { // cmp.zoomLegendId = cmp.getBottomToolbar().id; // cmp.zoomPanel.legendDiv = cmp.zoomLegendId; // cmp.thumbnailPanel.legendDiv = cmp.zoomLegendId; // }.createDelegate(this), this); } |
xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { | initComponent : function() { Ext.apply(this, { width : 500, frame : false, frame : true, items : [new Ext.form.FormPanel({ id : 'uploadform', labelWidth : 50, fileUpload : true, header : false, method : 'POST', frame : true, url : '/Gemma/uploadFile.html', timeout : 15000, defaults : { anchor : '95%', allowBlank : false, msgTarget : 'side' }, items : [{ xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { xtype : 'fileuploadfield', id : 'form-file', emptyText : 'Select a file', fieldLabel : 'File', name : 'file-path', listeners : { 'fileselected' : function(field, value) { Ext.getCmp('file-upload-button').enable(); }.createDelegate(this) }, buttonCfg : { text : '', iconCls : 'upload-icon' } }], buttons : [{ text : 'Upload', id : 'file-upload-button', disabled : true, handler : function() { var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; var form = Ext.getCmp('uploadform').getForm(); if (form.isValid()) { form.submit({ waitMsg : 'Uploading your file ...', success : function(form, a) { var m = a.result; var m = a.result; Ext.getCmp('messages') .setText("File uploaded: " + m.originalFile + "; " + m.size + " bytes"); this.fireEvent('finish', m); }.createDelegate(this), failure : function(form, a) { Ext.Msg.alert('Failure', 'Problem with processing of file on the server: ' + a.result.error); this.fireEvent('fail', a.result); }.createDelegate(this), scope : this }); this.fireEvent('start'); } }, scope : this }] })], bbar : new Ext.ux.StatusBar({ id : 'messages' }) }); Gemma.FileUploadForm.superclass.initComponent.call(this); this.addEvents({ finish : true, fail : true, start : true, cancel : true }); } |
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var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; | initComponent : function() { Ext.apply(this, { width : 500, frame : false, frame : true, items : [new Ext.form.FormPanel({ id : 'uploadform', labelWidth : 50, fileUpload : true, header : false, method : 'POST', frame : true, url : '/Gemma/uploadFile.html', timeout : 15000, defaults : { anchor : '95%', allowBlank : false, msgTarget : 'side' }, items : [{ xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { xtype : 'fileuploadfield', id : 'form-file', emptyText : 'Select a file', fieldLabel : 'File', name : 'file-path', listeners : { 'fileselected' : function(field, value) { Ext.getCmp('file-upload-button').enable(); }.createDelegate(this) }, buttonCfg : { text : '', iconCls : 'upload-icon' } }], buttons : [{ text : 'Upload', id : 'file-upload-button', disabled : true, handler : function() { var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; var form = Ext.getCmp('uploadform').getForm(); if (form.isValid()) { form.submit({ waitMsg : 'Uploading your file ...', success : function(form, a) { var m = a.result; var m = a.result; Ext.getCmp('messages') .setText("File uploaded: " + m.originalFile + "; " + m.size + " bytes"); this.fireEvent('finish', m); }.createDelegate(this), failure : function(form, a) { Ext.Msg.alert('Failure', 'Problem with processing of file on the server: ' + a.result.error); this.fireEvent('fail', a.result); }.createDelegate(this), scope : this }); this.fireEvent('start'); } }, scope : this }] })], bbar : new Ext.ux.StatusBar({ id : 'messages' }) }); Gemma.FileUploadForm.superclass.initComponent.call(this); this.addEvents({ finish : true, fail : true, start : true, cancel : true }); } |
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waitMsg : 'Uploading your file ...', | initComponent : function() { Ext.apply(this, { width : 500, frame : false, frame : true, items : [new Ext.form.FormPanel({ id : 'uploadform', labelWidth : 50, fileUpload : true, header : false, method : 'POST', frame : true, url : '/Gemma/uploadFile.html', timeout : 15000, defaults : { anchor : '95%', allowBlank : false, msgTarget : 'side' }, items : [{ xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { xtype : 'fileuploadfield', id : 'form-file', emptyText : 'Select a file', fieldLabel : 'File', name : 'file-path', listeners : { 'fileselected' : function(field, value) { Ext.getCmp('file-upload-button').enable(); }.createDelegate(this) }, buttonCfg : { text : '', iconCls : 'upload-icon' } }], buttons : [{ text : 'Upload', id : 'file-upload-button', disabled : true, handler : function() { var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; var form = Ext.getCmp('uploadform').getForm(); if (form.isValid()) { form.submit({ waitMsg : 'Uploading your file ...', success : function(form, a) { var m = a.result; var m = a.result; Ext.getCmp('messages') .setText("File uploaded: " + m.originalFile + "; " + m.size + " bytes"); this.fireEvent('finish', m); }.createDelegate(this), failure : function(form, a) { Ext.Msg.alert('Failure', 'Problem with processing of file on the server: ' + a.result.error); this.fireEvent('fail', a.result); }.createDelegate(this), scope : this }); this.fireEvent('start'); } }, scope : this }] })], bbar : new Ext.ux.StatusBar({ id : 'messages' }) }); Gemma.FileUploadForm.superclass.initComponent.call(this); this.addEvents({ finish : true, fail : true, start : true, cancel : true }); } |
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this.fireEvent('start'); | this.startMonitor(); | initComponent : function() { Ext.apply(this, { width : 500, frame : false, frame : true, items : [new Ext.form.FormPanel({ id : 'uploadform', labelWidth : 50, fileUpload : true, header : false, method : 'POST', frame : true, url : '/Gemma/uploadFile.html', timeout : 15000, defaults : { anchor : '95%', allowBlank : false, msgTarget : 'side' }, items : [{ xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { xtype : 'fileuploadfield', id : 'form-file', emptyText : 'Select a file', fieldLabel : 'File', name : 'file-path', listeners : { 'fileselected' : function(field, value) { Ext.getCmp('file-upload-button').enable(); }.createDelegate(this) }, buttonCfg : { text : '', iconCls : 'upload-icon' } }], buttons : [{ text : 'Upload', id : 'file-upload-button', disabled : true, handler : function() { var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; var form = Ext.getCmp('uploadform').getForm(); if (form.isValid()) { form.submit({ waitMsg : 'Uploading your file ...', success : function(form, a) { var m = a.result; var m = a.result; Ext.getCmp('messages') .setText("File uploaded: " + m.originalFile + "; " + m.size + " bytes"); this.fireEvent('finish', m); }.createDelegate(this), failure : function(form, a) { Ext.Msg.alert('Failure', 'Problem with processing of file on the server: ' + a.result.error); this.fireEvent('fail', a.result); }.createDelegate(this), scope : this }); this.fireEvent('start'); } }, scope : this }] })], bbar : new Ext.ux.StatusBar({ id : 'messages' }) }); Gemma.FileUploadForm.superclass.initComponent.call(this); this.addEvents({ finish : true, fail : true, start : true, cancel : true }); } |
} | }, | initComponent : function() { Ext.apply(this, { width : 500, frame : false, frame : true, items : [new Ext.form.FormPanel({ id : 'uploadform', labelWidth : 50, fileUpload : true, header : false, method : 'POST', frame : true, url : '/Gemma/uploadFile.html', timeout : 15000, defaults : { anchor : '95%', allowBlank : false, msgTarget : 'side' }, items : [{ xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { xtype : 'fileuploadfield', id : 'form-file', emptyText : 'Select a file', fieldLabel : 'File', name : 'file-path', listeners : { 'fileselected' : function(field, value) { Ext.getCmp('file-upload-button').enable(); }.createDelegate(this) }, buttonCfg : { text : '', iconCls : 'upload-icon' } }], buttons : [{ text : 'Upload', id : 'file-upload-button', disabled : true, handler : function() { var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; var form = Ext.getCmp('uploadform').getForm(); if (form.isValid()) { form.submit({ waitMsg : 'Uploading your file ...', success : function(form, a) { var m = a.result; var m = a.result; Ext.getCmp('messages') .setText("File uploaded: " + m.originalFile + "; " + m.size + " bytes"); this.fireEvent('finish', m); }.createDelegate(this), failure : function(form, a) { Ext.Msg.alert('Failure', 'Problem with processing of file on the server: ' + a.result.error); this.fireEvent('fail', a.result); }.createDelegate(this), scope : this }); this.fireEvent('start'); } }, scope : this }] })], bbar : new Ext.ux.StatusBar({ id : 'messages' }) }); Gemma.FileUploadForm.superclass.initComponent.call(this); this.addEvents({ finish : true, fail : true, start : true, cancel : true }); } |
this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', split : true, id : 'gene-chooser-panel' | this.formId = Ext.id(); Ext.apply(this, { items : new Ext.FormPanel({ frame : false, labelAlign : 'left', id : this.formId, height : 250, items : new Ext.form.FieldSet({ height : 240, items : [new Ext.form.TextField({ fieldLabel : 'Name', allowBlank : false, name : 'newSetName', minLength : 3, invalidText : "You must provide a name", width : 300 }), new Ext.form.TextArea({ fieldLabel : 'Description', name : 'newSetDescription', value : this.description, width : 300 })] }), buttons : [{ text : "Cancel", handler : this.hide.createDelegate(this, []) }, { text : "OK", handler : this.onCommit.createDelegate(this), scope : this, tooltip : "OK" }] }) | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', split : true, id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center', split : true }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); //add widget for searching for gene groups (or go terms) Ext.apply(this, { id : "gene-manager-panel", layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function(groupId) { var genePanel = Ext .getCmp('gene-chooser-panel'); genePanel.currentGroupId = null; refreshGeneGroupData(groupId); genePanel.getTopToolbar().geneCombo.focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/disk.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel").getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); var geneIds = Ext.getCmp("gene-chooser-panel").getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, rec.data.description, geneIds, { callback : function(d) { // so that system doesn't ask to save again Ext.getCmp('gene-chooser-panel').currentGroupId = null; refreshGeneGroupData(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); loadMask.hide(); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", pressed : true, enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/delete.png", tooltip : "Delete a group", handler : function() { deleteGeneGroup(); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); this.geneGroupPanel.on("keypress", function(e) { if (e.getCharCode() == Ext.EventObject.DELETE) { deleteGeneGroup(); } }, this); refreshGeneGroupData(); } |
this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center', split : true }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { id : "gene-manager-panel", layout : 'border', height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function(groupId) { var genePanel = Ext .getCmp('gene-chooser-panel'); genePanel.currentGroupId = null; refreshGeneGroupData(groupId); genePanel.getTopToolbar().geneCombo.focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/disk.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel").getSelectionModel().getSelected(); if (rec) { var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); var geneIds = Ext.getCmp("gene-chooser-panel").getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, rec.data.description, geneIds, { callback : function(d) { Ext.getCmp('gene-chooser-panel').currentGroupId = null; refreshGeneGroupData(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); loadMask.hide(); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", pressed : true, enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/delete.png", tooltip : "Delete a group", handler : function() { deleteGeneGroup(); } }] }, items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); this.geneGroupPanel.on("keypress", function(e) { if (e.getCharCode() == Ext.EventObject.DELETE) { deleteGeneGroup(); } }, this); refreshGeneGroupData(); | Gemma.GeneSetDetailsDialog.superclass.initComponent.call(this); this.addEvents("commit"); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', split : true, id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center', split : true }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); //add widget for searching for gene groups (or go terms) Ext.apply(this, { id : "gene-manager-panel", layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function(groupId) { var genePanel = Ext .getCmp('gene-chooser-panel'); genePanel.currentGroupId = null; refreshGeneGroupData(groupId); genePanel.getTopToolbar().geneCombo.focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/disk.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel").getSelectionModel().getSelected(); if (rec) { // Update the genes incase they changed also. Can // only update the genes for 1 list. var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); var geneIds = Ext.getCmp("gene-chooser-panel").getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, rec.data.description, geneIds, { callback : function(d) { // so that system doesn't ask to save again Ext.getCmp('gene-chooser-panel').currentGroupId = null; refreshGeneGroupData(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); loadMask.hide(); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", pressed : true, enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/delete.png", tooltip : "Delete a group", handler : function() { deleteGeneGroup(); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); this.geneGroupPanel.on("keypress", function(e) { if (e.getCharCode() == Ext.EventObject.DELETE) { deleteGeneGroup(); } }, this); refreshGeneGroupData(); } |
proxy : new Ext.data.DWRProxy(OntologyService.findExactTerm), | proxy : new Ext.data.DWRProxy(AnnotationController.findTerm), | initComponent : function() { Ext.apply(this, { record : Ext.data.Record.create([{ name : "id", type : "int" }, { name : "value", type : "string" }, { name : "valueUri", type : "string" }, { name : "categoryUri", type : "string" }, { name : "category", type : "string" }, { name : "hover", mapping : "this", convert : this.getHover.createDelegate(this) }, { name : "style", mapping : "this", convert : this.getStyle.createDelegate(this) }]) }); Ext.apply(this, { store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(OntologyService.findExactTerm), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), remoteSort : true }) }); Gemma.CharacteristicCombo.superclass.initComponent.call(this); this.tpl = new Ext.XTemplate('<tpl for="."><div ext:qtip="{hover}" style="font-size:11px" class="x-combo-list-item {style}">{value}</div></tpl>'); this.tpl.compile(); this.characteristic = { category : null, categoryUri : null, value : null, valueUri : null }; this.on("select", function(combo, record, index) { this.characteristic.value = record.data.value; this.characteristic.valueUri = record.data.valueUri; /* * The addition of '.' is a complete hack to workaround an extjs limitation. It's to make sure extjs * knows we want it to detect a change. See bug 1811 */ combo.setValue(record.data.value + "."); }); }, |
this.on("change", function(combo) { if (this.getValue()) { var ix = this.getStore().find("term", this.getValue()); var rec = this.getStore().getAt(ix); this.select(ix, true); this.fireEvent('select', this, rec, ix); } }); | initComponent : function() { if (this.termKey) { this.dwrMethod = MgedOntologyService.getMgedTermsByKey; this.dwrParams = [this.termKey]; } else { this.dwrMethod = MgedOntologyService.getUsefulMgedTerms; this.dwrParams = []; } this.store = new Ext.data.Store({ proxy : new Ext.data.DWRProxy(this.dwrMethod), reader : new Ext.data.ListRangeReader({ id : "uri" }, this.record), remoteSort : false, sortInfo : { field : "term" } }); Gemma.MGEDCombo.superclass.initComponent.call(this); // this.tpl = new Ext.XTemplate('<tpl for="."><div ext:qtip="{comment}<br/>{uri}" // class="x-combo-list-item">{term}</div></tpl>'); // this.tpl.compile(); this.on("select", function(combo, record, index) { this.selectedTerm = record.data; }); this.store.load({ params : this.dwrParams }); } |
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}, this.filterCombo, '->', { | }, this.filterCombo, this.taxonCombo, this.limitCombo] }), bbar : new Ext.Toolbar({ items : [{ | initComponent : function() { this.searchInGridField = new Ext.form.TextField({ enableKeyEvents : true, emptyText : 'Search', tooltip : "Text typed here will act as a filter.", listeners : { "keyup" : { fn : this.searchForText.createDelegate(this), scope : this, options : { delay : 100 } } } }); this.filterCombo = new Ext.form.ComboBox({ typeAhead : true, triggerAction : 'all', lazyRender : true, mode : 'local', store : new Ext.data.ArrayStore({ id : 0, fields : ['filterType', 'displayText'], data : [[0, 'No filter'], [1, 'Need diff'], [2, 'Need coex'], [3, 'Has diff'], [4, 'Has coex']] /* * TODO: support other filters. */ }), valueField : 'filterType', displayField : 'displayText', listeners : { scope : this, 'select' : this.filterByNeed } }); Ext.apply(this, { tbar : new Ext.Toolbar({ items : [{ xtype : 'button', minWidth : 20, cls : 'x-btn-icon', icon : '/Gemma/images/icons/arrow_refresh_small.png', handler : this.refresh, tooltip : "Refresh the table", scope : this }, this.filterCombo, '->', { xtype : 'button', handler : this.clearFilter.createDelegate(this), tooltip : "Show all", scope : this, cls : 'x-btn-text', text : 'Reset filter' }, ' ', this.searchInGridField] }) }); Gemma.EEReportPanel.superclass.initComponent.call(this); } |
'tagsUpdated', 'updated', 'pubmedUpdated', 'pubmedRemove'); | 'tagsUpdated', 'updated'); | initComponent : function() { Gemma.EEManager.superclass.initComponent.call(this); this.addEvents('done', 'reportUpdated', 'differential', 'missingValue', 'link', 'processedVector', 'deleted', 'tagsUpdated', 'updated', 'pubmedUpdated', 'pubmedRemove'); this.save = function(id, fields) { /* * TODO */ }; } |
this.tpl = Gemma.getProfileThumbnailTemplate(false, false); Gemma.VisualizationDifferentialWindow.superclass.initComponent.call(this); | initComponent : function() { this.tpl = Gemma.getProfileThumbnailTemplate(false, false); Gemma.VisualizationDifferentialWindow.superclass.initComponent.call(this); }, |
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}, | if (this.title) { this.originalTitle = this.title; } this.zoomLegendId = 'zoomLegend-' + Ext.id(); this.store = new Gemma.VisualizationStore({ readMethod : this.readMethod }); this.dv = new Gemma.DataVectorThumbnailsView({ tpl : this.tpl, store : this.store, heatmapSortMethod : this.heatmapSortMethod }); this.zoomPanel = new Gemma.VisualizationZoomPanel({ store : this.store, legendDiv : this.zoomLegendId, dv : this.dv, heatmapSortMethod : this.heatmapSortMethod }); this.thumbnailPanel = new Ext.Panel({ region : 'west', split : true, width : Gemma.THUMBNAIL_PLOT_SIZE + 50, collapsible : true, title : "Thumbnails", stateful : false, margins : '3 0 3 3', items : this.dv, autoScroll : true, zoomPanel : this.zoomPanel, legendDiv : this.zoomLegendId, hidden : !this.thumbnails, html : { id : this.zoomLegendId, tag : 'div', style : 'width:' + (Gemma.THUMBNAIL_PLOT_SIZE + 50) + 'px;height:' + Gemma.THUMBNAIL_PLOT_SIZE + 'px; float:left;' } }); var items = [this.thumbnailPanel, this.zoomPanel] var browserWarning = ""; if (Ext.isIE) { browserWarning = "<span ext:qtip='Plots use a feature of HTML 5 that runs in IE via emulation unless you have Chrome Frame installed. Firefox, Chrome, Safari and Opera will be faster too.'>" + "Too slow in Explorer? Try <a href='http: } Ext.apply(this, { items : items, bbar : new Ext.Toolbar({ items : [{ xtype : 'tbbutton', id : this.downloadDataBtnId, icon : '../images/download.gif', cls : 'x-btn-text-icon', hidden : this.downloadLink === undefined, disabled : true, tooltip : "Download displayed data in a tab-delimited format", handler : this.downloadData.createDelegate(this) }, browserWarning, '->', { xtype : 'tbbutton', text : this.showLegend ? "Hide legend" : "Show legend", id : this.toggleLegendBtnId, handler : this.toggleLegend.createDelegate(this), tooltip : "Toggle display of the plot legend", disabled : true, hidden : this.heatmapMode }, { xtype : 'tbbutton', text : this.forceFitPlots ? "Expand" : "Fit width", id : this.forceFitBtnId, handler : this.toggleForceFit.createDelegate(this), tooltip : "Toggle forcing of the plot to fit in the width of the window", disabled : true, hidden : false }, { xtype : 'tbbutton', text : this.heatmapMode ? "Switch to line plot" : "Switch to heatmap", id : this.toggleViewBtnId, disabled : true, handler : this.switchView.createDelegate(this) } /* todo: add standarization on/off option. */] }) }); Gemma.VisualizationWithThumbsWindow.superclass.initComponent.call(this); this.dv.getStore().on('load', function(s, records, options) { Ext.getCmp(this.toggleViewBtnId).enable(); Ext.getCmp(this.forceFitBtnId).enable(); Ext.getCmp(this.toggleLegendBtnId).enable(); Ext.getCmp(this.downloadDataBtnId).enable(); Ext.getCmp(this.toggleViewBtnId).setText(this.heatmapMode ? "Switch to line plot" : "Switch to heatmap"); Ext.getCmp(this.forceFitBtnId).setText(this.forceFitPlots ? "Expand" : "Fit width"); Ext.getCmp(this.toggleLegendBtnId).setText(this.showLegend ? "Hide legend" : "Show legend"); if (this.heatmapMode) { Ext.getCmp(this.toggleLegendBtnId).hide(); } else { Ext.getCmp(this.toggleLegendBtnId).show(); } }, this); this.dv.getStore().on('loadexception', function() { Ext.Msg.alert("No data", "Sorry, no data were available", function() { this.close(); this.destroy(); }.createDelegate(this)); }, this); this.dv.on('selectionchange', function(dv, selections) { if (selections.length > 0) { var record = dv.getRecord(selections[0]); if (!record || record === undefined) { return; } this.zoom(record); } }.createDelegate(this), this); this.on('staterestore', function(w, state) { this.zoomPanel.heatmapMode = this.heatmapMode; this.zoomPanel.forceFitPlots = this.forceFitPlots; this.zoomPanel.showLegend = this.showLegend; this.updateTemplate(); }, this); } | initComponent : function() { this.tpl = Gemma.getProfileThumbnailTemplate(false, false); Gemma.VisualizationDifferentialWindow.superclass.initComponent.call(this); }, |
Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); | initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, |
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this.doLayout(); | if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); | initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, |
mgedTermKey : "experiment" | mgedTermKey : "experiment", taxonId : this.taxonId | initComponent : function() { Ext.apply(this, { columns : [{ header : "Category", dataIndex : "className" }, { header : "Term", dataIndex : "termName", renderer : this.termStyler.createDelegate(this) }, { header : "Annotation belongs to:", dataIndex : "parentLink", renderer : this.parentStyler.createDelegate(this), hidden : this.showParent ? false : true }, { header : "Evidence", dataIndex : "evidenceCode" }] }); if (this.pageSize) { Ext.apply(this, { store : new Gemma.PagingDataStore({ proxy : new Ext.data.DWRProxy(this.readMethod), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), pageSize : this.pageSize }) }); Ext.apply(this, { bbar : new Ext.PagingToolbar({ pageSize : this.pageSize, store : this.getStore() }) }); } else { Ext.apply(this, { store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(this.readMethod), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record) }) }); } if (this.editable && this.useDefaultToolbar) { Ext.apply(this, { tbar : new Gemma.AnnotationToolBar({ annotationGrid : this, createHandler : function(characteristic, callback) { this.writeMethod(characteristic, [this.entId], callback); }.createDelegate(this), deleteHandler : function(ids, callback) { this.removeMethod(ids, [this.entId], callback); }.createDelegate(this), mgedTermKey : "experiment" }) }); } Gemma.AnnotationGrid.superclass.initComponent.call(this); this.getStore().setDefaultSort('className'); // this.relayEvents(this.getStore(), ["loadexception"]); this.autoExpandColumn = this.showParent ? 2 : 1; this.getColumnModel().defaultSortable = true; if (this.editable) { /* * Display all the edit functions. */ var CATEGORY_COLUMN = 0; var VALUE_COLUMN = 1; var PARENT_COLUMN = 2; var EVIDENCE_COLUMN = 3; // Category setup this.categoryCombo = new Gemma.MGEDCombo({ lazyRender : true, termKey : this.mgedTermKey }); var categoryEditor = new Ext.grid.GridEditor(this.categoryCombo); this.categoryCombo.on("select", function(combo, record, index) { categoryEditor.completeEdit(); }); this.getColumnModel().setEditor(CATEGORY_COLUMN, categoryEditor); // Value setup this.valueCombo = new Gemma.CharacteristicCombo({ lazyRender : true }); var valueEditor = new Ext.grid.GridEditor(this.valueCombo); this.valueCombo.on("select", function(combo, record, index) { valueEditor.completeEdit(); }); this.getColumnModel().setEditor(VALUE_COLUMN, valueEditor); // Evidence setup this.evidenceCombo = new Gemma.EvidenceCodeCombo({ lazyRender : true }); var evidenceEditor = new Ext.grid.GridEditor(this.evidenceCombo); this.evidenceCombo.on("select", function(combo, record, index) { evidenceEditor.completeEdit(); }); this.getColumnModel().setEditor(EVIDENCE_COLUMN, evidenceEditor); this.on("beforeedit", function(e) { var row = e.record.data; var col = this.getColumnModel().getColumnId(e.column); if (col == VALUE_COLUMN) { this.valueCombo.setCategory.call(this.valueCombo, row.className, row.classUri); } }); if (this.getTopToolbar().deleteButton) { this.getSelectionModel().on("selectionchange", function(model) { var selected = model.getSelections(); if (selected.length > 0) { this.getTopToolbar().deleteButton.enable(); } else { this.getTopToolbar().deleteButton.disable(); } }, this); } this.on("afteredit", function(e) { var col = this.getColumnModel().getColumnId(e.column); if (col == CATEGORY_COLUMN) { var term = this.categoryCombo.getTerm.call(this.categoryCombo); e.record.set("className", term.term); e.record.set("classUri", term.uri); } else if (col == VALUE_COLUMN) { var c = this.valueCombo.getCharacteristic.call(this.valueCombo); e.record.set("termName", c.value); e.record.set("termUri", c.valueUri); } else if (col == EVIDENCE_COLUMN) { var c = this.evidenceCombo.getCode.call(this.evidenceCombo); e.record.set("evidenceCode", c.code); } this.getView().refresh(); }); } this.on("celldblclick", function(grid, rowIndex, cellIndex) { var record = grid.getStore().getAt(rowIndex); var column = grid.getColumnModel().getColumnId(cellIndex); if (column == PARENT_COLUMN) { record.expanded = record.expanded ? 0 : 1; grid.getView().refresh(true); } }, this); if (!this.noInitialLoad) { this.getStore().load({ params : this.getReadParams() }); } }, |
this.valueCombo = new Gemma.CharacteristicCombo({ lazyRender : true | this.valueCombo = new Gemma.CharacteristicCombo({ taxonId : this.taxonId | initComponent : function() { Ext.apply(this, { columns : [{ header : "Category", dataIndex : "className" }, { header : "Term", dataIndex : "termName", renderer : this.termStyler.createDelegate(this) }, { header : "Annotation belongs to:", dataIndex : "parentLink", renderer : this.parentStyler.createDelegate(this), hidden : this.showParent ? false : true }, { header : "Evidence", dataIndex : "evidenceCode" }] }); if (this.pageSize) { Ext.apply(this, { store : new Gemma.PagingDataStore({ proxy : new Ext.data.DWRProxy(this.readMethod), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), pageSize : this.pageSize }) }); Ext.apply(this, { bbar : new Ext.PagingToolbar({ pageSize : this.pageSize, store : this.getStore() }) }); } else { Ext.apply(this, { store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(this.readMethod), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record) }) }); } if (this.editable && this.useDefaultToolbar) { Ext.apply(this, { tbar : new Gemma.AnnotationToolBar({ annotationGrid : this, createHandler : function(characteristic, callback) { this.writeMethod(characteristic, [this.entId], callback); }.createDelegate(this), deleteHandler : function(ids, callback) { this.removeMethod(ids, [this.entId], callback); }.createDelegate(this), mgedTermKey : "experiment" }) }); } Gemma.AnnotationGrid.superclass.initComponent.call(this); this.getStore().setDefaultSort('className'); // this.relayEvents(this.getStore(), ["loadexception"]); this.autoExpandColumn = this.showParent ? 2 : 1; this.getColumnModel().defaultSortable = true; if (this.editable) { /* * Display all the edit functions. */ var CATEGORY_COLUMN = 0; var VALUE_COLUMN = 1; var PARENT_COLUMN = 2; var EVIDENCE_COLUMN = 3; // Category setup this.categoryCombo = new Gemma.MGEDCombo({ lazyRender : true, termKey : this.mgedTermKey }); var categoryEditor = new Ext.grid.GridEditor(this.categoryCombo); this.categoryCombo.on("select", function(combo, record, index) { categoryEditor.completeEdit(); }); this.getColumnModel().setEditor(CATEGORY_COLUMN, categoryEditor); // Value setup this.valueCombo = new Gemma.CharacteristicCombo({ lazyRender : true }); var valueEditor = new Ext.grid.GridEditor(this.valueCombo); this.valueCombo.on("select", function(combo, record, index) { valueEditor.completeEdit(); }); this.getColumnModel().setEditor(VALUE_COLUMN, valueEditor); // Evidence setup this.evidenceCombo = new Gemma.EvidenceCodeCombo({ lazyRender : true }); var evidenceEditor = new Ext.grid.GridEditor(this.evidenceCombo); this.evidenceCombo.on("select", function(combo, record, index) { evidenceEditor.completeEdit(); }); this.getColumnModel().setEditor(EVIDENCE_COLUMN, evidenceEditor); this.on("beforeedit", function(e) { var row = e.record.data; var col = this.getColumnModel().getColumnId(e.column); if (col == VALUE_COLUMN) { this.valueCombo.setCategory.call(this.valueCombo, row.className, row.classUri); } }); if (this.getTopToolbar().deleteButton) { this.getSelectionModel().on("selectionchange", function(model) { var selected = model.getSelections(); if (selected.length > 0) { this.getTopToolbar().deleteButton.enable(); } else { this.getTopToolbar().deleteButton.disable(); } }, this); } this.on("afteredit", function(e) { var col = this.getColumnModel().getColumnId(e.column); if (col == CATEGORY_COLUMN) { var term = this.categoryCombo.getTerm.call(this.categoryCombo); e.record.set("className", term.term); e.record.set("classUri", term.uri); } else if (col == VALUE_COLUMN) { var c = this.valueCombo.getCharacteristic.call(this.valueCombo); e.record.set("termName", c.value); e.record.set("termUri", c.valueUri); } else if (col == EVIDENCE_COLUMN) { var c = this.evidenceCombo.getCode.call(this.evidenceCombo); e.record.set("evidenceCode", c.code); } this.getView().refresh(); }); } this.on("celldblclick", function(grid, rowIndex, cellIndex) { var record = grid.getStore().getAt(rowIndex); var column = grid.getColumnModel().getColumnId(cellIndex); if (column == PARENT_COLUMN) { record.expanded = record.expanded ? 0 : 1; grid.getView().refresh(true); } }, this); if (!this.noInitialLoad) { this.getStore().load({ params : this.getReadParams() }); } }, |
var template = new Ext.XTemplate('<tpl for="."><div style="font-size:11px" class="x-combo-list-item" ext:qtip="{name} ({size})"> {name} {description} ({size})</div></tpl>'); | var template = new Ext.XTemplate('<tpl for="."><div style="font-size:11px" class="x-combo-list-item" ext:qtip="{name} ({size})"> {name} - {description} ({size})</div></tpl>'); | initComponent : function() { var template = new Ext.XTemplate('<tpl for="."><div style="font-size:11px" class="x-combo-list-item" ext:qtip="{name} ({size})"> {name} {description} ({size})</div></tpl>'); Ext.apply(this, { tpl : template, store : new Gemma.GeneGroupStore({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByName), sortInfo : { field : "name", dir : "ASC" }, autoLoad : false }) }); Gemma.GeneGroupCombo.superclass.initComponent.call(this); this.store.on("datachanged", function() { if (this.store.getCount() === 0) { this.fireEvent("invalid", "No matching genes"); } }, this); }, |
this.store.on("datachanged", function() { if (this.store.getCount() === 0) { this.fireEvent("invalid", "No matching genes"); } }, this); | this.on('select', this.setGeneGroup, this); | initComponent : function() { var template = new Ext.XTemplate('<tpl for="."><div style="font-size:11px" class="x-combo-list-item" ext:qtip="{name} ({size})"> {name} {description} ({size})</div></tpl>'); Ext.apply(this, { tpl : template, store : new Gemma.GeneGroupStore({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByName), sortInfo : { field : "name", dir : "ASC" }, autoLoad : false }) }); Gemma.GeneGroupCombo.superclass.initComponent.call(this); this.store.on("datachanged", function() { if (this.store.getCount() === 0) { this.fireEvent("invalid", "No matching genes"); } }, this); }, |
height : 300, region : 'south', | region : 'east', | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
height : 300, | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
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region : 'north' | region : 'center' | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); | refreshGeneGroupData(); | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
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SecurityController.updatePermissions(p, { | var rec = Ext.getCmp("gene-group-panel") .getSelectionModel().getSelected(); if (rec) { var geneIds = Ext.getCmp("gene-chooser-panel") .getGeneIds(); SecurityController.updateGeneGroup( rec.data.entityId, geneIds, { | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); | refreshGeneGroupData(); | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
refreshGeneGroupData(); | initComponent : function() { var refreshGeneGroupData = function() { var showPrivateOnly = !Ext.getCmp("geneGroupData-show-public").pressed; Ext.getCmp('gene-group-panel').getStore().load({ params : [showPrivateOnly] }); }; this.geneChooserPanel = new Gemma.GeneGrid({ height : 300, region : 'south', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ height : 300, id : 'gene-group-panel', region : 'north' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { var geneIds = Ext .getCmp("gene-chooser-panel") .getGeneIds(); // TODO add checks for no/bad genes SecurityController.createGeneGroup( text, geneIds, { callback : function( groupname) { /* * Refresh */ Ext .getCmp("gene-group-panel") .getStore() .load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }) } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { /* * change R/W/P on selected data, set owner. Get just * the edited records. */ var recs = Ext.getCmp("gene-group-panel").getStore() .getModifiedRecords(); if (recs && recs[0]) { var p = []; for (var i = 0; i < recs.length; i++) { /* * This is ugly. The 'owner' object gets turned * into a plain string.have to reconstruct the * owner from strings */ // This is the value if the owner has not been // changed in the combo box if (recs[i].data.owner.authority) { recs[i].data.owner = { authority : recs[i].data.owner.authority, principal : recs[i].data.owner.principal }; } // this is the value if the owner has not been // changed. principal is always true as combo // only filled with principals else if (recs[i].data.owner) { recs[i].data.owner = { authority : recs[i].data.owner, principal : "true" }; } else { Ext.Msg.alert('Owner can not be changed'); } p.push(recs[i].data); } SecurityController.updatePermissions(p, { callback : function(d) { refreshGeneGroupData(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel') .getSelectionModel().getSelected(); var groupId = sel.get("entityId"); var processResult = function(btn) { /* * TODO -- no full server side support yet! Deleting * group is not so easy if there is data attached. */ if (btn == 'yes') { SecurityController.deleteGeneGroup(groupId, { callback : function() { Ext.getCmp('gene-group-panel') .getStore().load({ params : [] }); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); }; } Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); } |
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handler : function() { var sel = Ext.getCmp('gene-group-panel').getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext.getCmp('gene-chooser-panel').currentGroupId = null; Ext.getCmp('gene-group-panel').getSelectionModel() .selectFirstRow(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } | handler : function() {deleteGeneGroup();} | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function(groupId) { var genePanel = Ext .getCmp('gene-chooser-panel'); genePanel.currentGroupId = null; genePanel.loadGenes([]); refreshGeneGroupData(groupId); genePanel.getTopToolbar().geneCombo.focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel").getSelectionModel().getSelected(); if (rec) { // update description field if necessary // console.log(rec.data.description); // Update the genes incase they changed also. Can // only update the genes for 1 list. var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); var geneIds = Ext.getCmp("gene-chooser-panel").getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, rec.data.description, geneIds, { callback : function(d) { // so that system doesn't ask to save again Ext.getCmp('gene-chooser-panel').currentGroupId = null; refreshGeneGroupData(); loadMask.hide() }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel').getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext.getCmp('gene-chooser-panel').currentGroupId = null; Ext.getCmp('gene-group-panel').getSelectionModel() .selectFirstRow(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
this.geneGroupPanel.on("keypress", function(e) { if (e.getCharCode() == Ext.EventObject.DELETE) { deleteGeneGroup(); } }, this); | initComponent : function() { this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', id : 'gene-chooser-panel' }); this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center' }); Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] }); Ext.apply(this, { layout : 'border', // width : "100%", height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/group_add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function(groupId) { var genePanel = Ext .getCmp('gene-chooser-panel'); genePanel.currentGroupId = null; genePanel.loadGenes([]); refreshGeneGroupData(groupId); genePanel.getTopToolbar().geneCombo.focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/database_save.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel").getSelectionModel().getSelected(); if (rec) { // update description field if necessary // console.log(rec.data.description); // Update the genes incase they changed also. Can // only update the genes for 1 list. var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); var geneIds = Ext.getCmp("gene-chooser-panel").getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, rec.data.description, geneIds, { callback : function(d) { // so that system doesn't ask to save again Ext.getCmp('gene-chooser-panel').currentGroupId = null; refreshGeneGroupData(); loadMask.hide() }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/group_delete.png", tooltip : "Delete a group", handler : function() { var sel = Ext.getCmp('gene-group-panel').getSelectionModel().getSelected(); var groupId = sel.get("id"); var groupName = sel.get("name"); var processResult = function(btn) { if (btn == 'yes') { var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); GeneSetController.deleteGeneGroup(groupId, { callback : function() { refreshGeneGroupData(); Ext.getCmp('gene-chooser-panel').currentGroupId = null; Ext.getCmp('gene-group-panel').getSelectionModel() .selectFirstRow(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }; Ext.Msg.show({ title : 'Are you sure?', msg : 'The group "' + groupName + " with id " + groupId + '" will be permanently deleted. This cannot be undone.', buttons : Ext.Msg.YESNO, fn : processResult, animEl : 'elId', icon : Ext.MessageBox.QUESTION }); } }] },// toolbar items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); refreshGeneGroupData(); } |
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sortInfo : { field : "size", dir : "DESC" }, | initComponent : function() { var template = new Ext.XTemplate('<tpl for="."><div style="font-size:11px" class="x-combo-list-item" ext:qtip="{name} ({size})"> {name} - {description} ({size})</div></tpl>'); Ext.apply(this, { tpl : template, store : new Gemma.GeneGroupStore({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByName), sortInfo : { field : "size", dir : "DESC" }, autoLoad : false }) }); Gemma.GeneGroupCombo.superclass.initComponent.call(this); this.on('select', this.setGeneGroup, this); if (this.prepopulate) { this.on('focus', function() { GeneSetController.getUsersGeneGroups(false, function(records) { this.store.loadData(records); }.createDelegate(this)); }.createDelegate(this), this, { scope : this, single : true }); } }, |
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GeneSetController.getUsersGeneGroups(false, function(records) { | GeneSetController.getUsersGeneGroups(false, this.taxon.id, function(records) { | initComponent : function() { var template = new Ext.XTemplate('<tpl for="."><div style="font-size:11px" class="x-combo-list-item" ext:qtip="{name} ({size})"> {name} - {description} ({size})</div></tpl>'); Ext.apply(this, { tpl : template, store : new Gemma.GeneGroupStore({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByName), sortInfo : { field : "size", dir : "DESC" }, autoLoad : false }) }); Gemma.GeneGroupCombo.superclass.initComponent.call(this); this.on('select', this.setGeneGroup, this); if (this.prepopulate) { this.on('focus', function() { GeneSetController.getUsersGeneGroups(false, function(records) { this.store.loadData(records); }.createDelegate(this)); }.createDelegate(this), this, { scope : this, single : true }); } }, |
failure : function(form, a) { | failure : function(form, a) { console.log(a); | initComponent : function() { Ext.apply(this, { width : 500, frame : false, frame : true, items : [new Ext.form.FormPanel({ id : 'uploadform', labelWidth : 50, fileUpload : true, header:false, method: 'POST', frame: true, url : '/Gemma/uploadFile.html', timeout: 15000, defaults : { anchor : '95%', allowBlank : false, msgTarget : 'side' }, items : [{ xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { xtype : 'fileuploadfield', id : 'form-file', emptyText : 'Select a file', fieldLabel : 'File', name : 'file-path', listeners : { 'fileselected' : function(field, value) { Ext.getCmp('file-upload-button').enable(); }.createDelegate(this) }, buttonCfg : { text : '', iconCls : 'upload-icon' } }], buttons : [{ text : 'Upload', id : 'file-upload-button', disabled : true, handler : function() { var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; var form = Ext.getCmp('uploadform').getForm(); if (form.isValid()) { form.submit({ waitMsg : 'Uploading your file ...', success : function(form, a) { var m = a.result; var m = a.result; Ext.getCmp('messages') .setText("File uploaded: " + m.originalFile + "; " + m.size + " bytes"); this.fireEvent('finish', m); }.createDelegate(this), failure : function(form, a) { Ext.Msg.alert('Failure', 'Problem with processing of file "' + a.result.originalFile + '" on the server'); this.fireEvent('fail', a.result); }.createDelegate(this), scope : this }); this.fireEvent('start'); } }, scope : this }] })], bbar : new Ext.ux.StatusBar({ id : 'messages' }) }); Gemma.FileUploadForm.superclass.initComponent.call(this); this.addEvents({ finish : true, fail : true, start : true, cancel : true }); } |
'Problem with processing of file "' + a.result.originalFile + '" on the server'); | 'Problem with processing of file on the server: ' + a.result.error); | initComponent : function() { Ext.apply(this, { width : 500, frame : false, frame : true, items : [new Ext.form.FormPanel({ id : 'uploadform', labelWidth : 50, fileUpload : true, header:false, method: 'POST', frame: true, url : '/Gemma/uploadFile.html', timeout: 15000, defaults : { anchor : '95%', allowBlank : false, msgTarget : 'side' }, items : [{ xtype : 'hidden', value : this.taskId, id : 'taskId', name : 'taskId' }, { xtype : 'fileuploadfield', id : 'form-file', emptyText : 'Select a file', fieldLabel : 'File', name : 'file-path', listeners : { 'fileselected' : function(field, value) { Ext.getCmp('file-upload-button').enable(); }.createDelegate(this) }, buttonCfg : { text : '', iconCls : 'upload-icon' } }], buttons : [{ text : 'Upload', id : 'file-upload-button', disabled : true, handler : function() { var taskId = parseInt(Math.random() * 1e12, 12); this.taskId = taskId; var form = Ext.getCmp('uploadform').getForm(); if (form.isValid()) { form.submit({ waitMsg : 'Uploading your file ...', success : function(form, a) { var m = a.result; var m = a.result; Ext.getCmp('messages') .setText("File uploaded: " + m.originalFile + "; " + m.size + " bytes"); this.fireEvent('finish', m); }.createDelegate(this), failure : function(form, a) { Ext.Msg.alert('Failure', 'Problem with processing of file "' + a.result.originalFile + '" on the server'); this.fireEvent('fail', a.result); }.createDelegate(this), scope : this }); this.fireEvent('start'); } }, scope : this }] })], bbar : new Ext.ux.StatusBar({ id : 'messages' }) }); Gemma.FileUploadForm.superclass.initComponent.call(this); this.addEvents({ finish : true, fail : true, start : true, cancel : true }); } |
handler : this.hide, | handler : function() {this.hide()}.createDelegate(this), | initComponent : function() { this.addEvents({ "commit" : true }); Ext.apply(this, { items : [{ id : 'gene-list-text', xtype : 'textarea', fieldLabel : "Paste in gene symbols, one per line, up to " + Gemma.MAX_GENES_PER_QUERY, width : 290 }], buttons : [{ text : 'Cancel', handler : this.hide, scope : this }, { text : 'OK', handler : this.onCommit, scope : this }, { text : 'Clear', handler : function() { Ext.getCmp('gene-list-text').setValue(""); } }] }); Gemma.GeneImportPanel.superclass.initComponent.call(this); } |
Ext.apply(this, { columns : [{ header : 'Name', dataIndex : 'name', editable : false, groupable : false, sortable : true }, { header : 'Description', dataIndex : 'description', editable : false, groupable : false, sortable : true }, { header : 'Owner', hidden : true, tooltip : 'Who owns the data', dataIndex : 'owner', groupable : true, sortable : true }, { header : 'size', sortable : true, dataIndex : 'size', editable : false, groupable : false, tooltip : 'number of genes in group' }], store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByGene), reader : new Ext.data.ListRangeReader({}, Ext.data.Record.create([{ name : "id", type : "int" }, { name : "name", type : "string" }, { name : "description", type : "string" }, { name : "owner" }, { name : "size", type : "int" }])) }) | this.geneChooserPanel = new Gemma.GeneGrid({ region : 'east', split : true, id : 'gene-chooser-panel' | initComponent : function() { Ext.apply(this, { columns : [{ header : 'Name', dataIndex : 'name', editable : false, groupable : false, sortable : true }, { header : 'Description', dataIndex : 'description', editable : false, groupable : false, sortable : true }, { header : 'Owner', hidden : true, tooltip : 'Who owns the data', dataIndex : 'owner', groupable : true, sortable : true }, { header : 'size', sortable : true, dataIndex : 'size', editable : false, groupable : false, tooltip : 'number of genes in group' }], store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByGene), reader : new Ext.data.ListRangeReader({}, Ext.data.Record.create([{ name : "id", type : "int" }, { name : "name", type : "string" }, { name : "description", type : "string" }, { name : "owner" }, { name : "size", type : "int" }])) }) }); Gemma.GeneGroupGrid.superclass.initComponent.call(this); this.getStore().load({ params : [this.geneid] }); } |
Gemma.GeneGroupGrid.superclass.initComponent.call(this); | this.geneGroupPanel = new Gemma.GeneGroupPanel({ id : 'gene-group-panel', region : 'center', split : true }); | initComponent : function() { Ext.apply(this, { columns : [{ header : 'Name', dataIndex : 'name', editable : false, groupable : false, sortable : true }, { header : 'Description', dataIndex : 'description', editable : false, groupable : false, sortable : true }, { header : 'Owner', hidden : true, tooltip : 'Who owns the data', dataIndex : 'owner', groupable : true, sortable : true }, { header : 'size', sortable : true, dataIndex : 'size', editable : false, groupable : false, tooltip : 'number of genes in group' }], store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByGene), reader : new Ext.data.ListRangeReader({}, Ext.data.Record.create([{ name : "id", type : "int" }, { name : "name", type : "string" }, { name : "description", type : "string" }, { name : "owner" }, { name : "size", type : "int" }])) }) }); Gemma.GeneGroupGrid.superclass.initComponent.call(this); this.getStore().load({ params : [this.geneid] }); } |
this.getStore().load({ params : [this.geneid] | Ext.apply(this.geneChooserPanel.getTopToolbar().taxonCombo, { stateId : "", stateful : false, stateEvents : [] | initComponent : function() { Ext.apply(this, { columns : [{ header : 'Name', dataIndex : 'name', editable : false, groupable : false, sortable : true }, { header : 'Description', dataIndex : 'description', editable : false, groupable : false, sortable : true }, { header : 'Owner', hidden : true, tooltip : 'Who owns the data', dataIndex : 'owner', groupable : true, sortable : true }, { header : 'size', sortable : true, dataIndex : 'size', editable : false, groupable : false, tooltip : 'number of genes in group' }], store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByGene), reader : new Ext.data.ListRangeReader({}, Ext.data.Record.create([{ name : "id", type : "int" }, { name : "name", type : "string" }, { name : "description", type : "string" }, { name : "owner" }, { name : "size", type : "int" }])) }) }); Gemma.GeneGroupGrid.superclass.initComponent.call(this); this.getStore().load({ params : [this.geneid] }); } |
Ext.apply(this, { id : "gene-manager-panel", layout : 'border', height : 400, title : "Gene Group Manager", tbar : { items : [{ tooltip : "Create New Group", icon : "/Gemma/images/icons/add.png", id : 'geneimportgroup-save-btn', handler : function(b, e) { Ext.Msg.prompt('New Group', 'Please enter the group name:', function(btn, text) { if (btn == 'ok') { GeneSetController.createGeneGroup(text, [], { callback : function(groupId) { var genePanel = Ext .getCmp('gene-chooser-panel'); genePanel.currentGroupId = null; refreshGeneGroupData(groupId); genePanel.getTopToolbar().geneCombo.focus(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); } }); } }); } }, { tooltip : "Save changes", icon : "/Gemma/images/icons/disk.png", id : 'manager-data-panel-save-btn', handler : function(b, e) { var rec = Ext.getCmp("gene-group-panel").getSelectionModel().getSelected(); if (rec) { var loadMask = new Ext.LoadMask(Ext.getCmp("gene-group-panel").getEl(), { msg : "Saving changes..." }); loadMask.show(); var geneIds = Ext.getCmp("gene-chooser-panel").getGeneIds(); GeneSetController.updateGeneGroup(rec.data.id, rec.data.description, geneIds, { callback : function(d) { Ext.getCmp('gene-chooser-panel').currentGroupId = null; refreshGeneGroupData(); loadMask.hide(); }, errorHandler : function(e) { Ext.Msg.alert('Sorry', e); loadMask.hide(); } }); } } }, { tooltip : "Refresh from the database", icon : "/Gemma/images/icons/arrow_refresh_small.png", handler : function() { refreshGeneGroupData(); } }, { tooltip : "Show/hide public data", id : "geneGroupData-show-public", pressed : true, enableToggle : true, icon : "/Gemma/images/icons/world_add.png", handler : function() { refreshGeneGroupData(); } }, { icon : "/Gemma/images/icons/delete.png", tooltip : "Delete a group", handler : function() { deleteGeneGroup(); } }] }, items : [this.geneGroupPanel, this.geneChooserPanel] }); Gemma.GeneGroupImporter.superclass.initComponent.call(this); this.geneGroupPanel.on("keypress", function(e) { if (e.getCharCode() == Ext.EventObject.DELETE) { deleteGeneGroup(); } }, this); refreshGeneGroupData(); | initComponent : function() { Ext.apply(this, { columns : [{ header : 'Name', dataIndex : 'name', editable : false, groupable : false, sortable : true }, { header : 'Description', dataIndex : 'description', editable : false, groupable : false, sortable : true }, { header : 'Owner', hidden : true, tooltip : 'Who owns the data', dataIndex : 'owner', groupable : true, sortable : true }, { header : 'size', sortable : true, dataIndex : 'size', editable : false, groupable : false, tooltip : 'number of genes in group' }], store : new Ext.data.Store({ proxy : new Ext.data.DWRProxy(GeneSetController.findGeneSetsByGene), reader : new Ext.data.ListRangeReader({}, Ext.data.Record.create([{ name : "id", type : "int" }, { name : "name", type : "string" }, { name : "description", type : "string" }, { name : "owner" }, { name : "size", type : "int" }])) }) }); Gemma.GeneGroupGrid.superclass.initComponent.call(this); this.getStore().load({ params : [this.geneid] }); } |
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width : 30 | width : 35 | initComponent : function() { var si; if (this.lite) { this.autoScroll = true; this.height = 300; si = { field : 'posSupp', direction : 'DESC' }; } else { si = { field : 'sortKey', direction : 'ASC' }; } this.ds = new Ext.data.Store({ proxy : new Ext.data.MemoryProxy([]), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), sortInfo : si }); var columns; if (this.lite) { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }] } else { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'details', header : "Details", dataIndex : 'details', renderer : this.detailsStyler.createDelegate(this), tooltip : "Links for probe-level details", sortable : false, width : 30 }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }, { id : 'go', header : "GO Overlap", dataIndex : "goSim", width : 75, renderer : this.goStyler.createDelegate(this), tooltip : "GO Similarity Score", sortable : true }, { id : 'datasets', header : "Datasets", dataIndex : "datasetVector", renderer : this.bitImageStyler.createDelegate(this), tooltip : "Dataset relevence map", sortable : false }, { id : 'linkOut', dataIndex : "foundGene", header : "More", sortable : false, width : 30, tooltip : "Links to other websites for more information", renderer : this.linkOutStyler }] } Ext.apply(this, { columns : columns }); if (!this.lite) { Ext.apply(this, { tbar : new Ext.Toolbar({ items : [{ hidden : !this.user, pressed : true, enableToggle : true, text : Gemma.SHOW_ONLY_MINE, tooltip : "Click to show/hide results containing only my data", cls : 'x-btn-text-icon details', toggleHandler : this.toggleMyData.createDelegate(this) }, ' ', ' ', { xtype : 'textfield', id : this.id + '-search-in-grid', tabIndex : 1, enableKeyEvents : true, emptyText : 'Find gene in results', listeners : { "keyup" : { fn : this.searchForText.createDelegate(this), scope : this, options : { delay : 100 } } } }] }) }); } Gemma.CoexpressionGrid.superclass.initComponent.call(this); this.on("cellclick", this.rowClickHandler.createDelegate(this), this); }, |
width : 75, | width : 70, | initComponent : function() { var si; if (this.lite) { this.autoScroll = true; this.height = 300; si = { field : 'posSupp', direction : 'DESC' }; } else { si = { field : 'sortKey', direction : 'ASC' }; } this.ds = new Ext.data.Store({ proxy : new Ext.data.MemoryProxy([]), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), sortInfo : si }); var columns; if (this.lite) { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }] } else { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'details', header : "Details", dataIndex : 'details', renderer : this.detailsStyler.createDelegate(this), tooltip : "Links for probe-level details", sortable : false, width : 30 }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }, { id : 'go', header : "GO Overlap", dataIndex : "goSim", width : 75, renderer : this.goStyler.createDelegate(this), tooltip : "GO Similarity Score", sortable : true }, { id : 'datasets', header : "Datasets", dataIndex : "datasetVector", renderer : this.bitImageStyler.createDelegate(this), tooltip : "Dataset relevence map", sortable : false }, { id : 'linkOut', dataIndex : "foundGene", header : "More", sortable : false, width : 30, tooltip : "Links to other websites for more information", renderer : this.linkOutStyler }] } Ext.apply(this, { columns : columns }); if (!this.lite) { Ext.apply(this, { tbar : new Ext.Toolbar({ items : [{ hidden : !this.user, pressed : true, enableToggle : true, text : Gemma.SHOW_ONLY_MINE, tooltip : "Click to show/hide results containing only my data", cls : 'x-btn-text-icon details', toggleHandler : this.toggleMyData.createDelegate(this) }, ' ', ' ', { xtype : 'textfield', id : this.id + '-search-in-grid', tabIndex : 1, enableKeyEvents : true, emptyText : 'Find gene in results', listeners : { "keyup" : { fn : this.searchForText.createDelegate(this), scope : this, options : { delay : 100 } } } }] }) }); } Gemma.CoexpressionGrid.superclass.initComponent.call(this); this.on("cellclick", this.rowClickHandler.createDelegate(this), this); }, |
}] | }, { id : 'gene2GeneProteinAssociationStringUrl', header : "PPI", dataIndex : "gene2GeneProteinAssociationStringUrl", width : 30, renderer : this.proteinlinkStyler.createDelegate(this), tooltip : "Evidence for Protein Protein Interactions from external sources", sortable : true } ] | initComponent : function() { var si; if (this.lite) { this.autoScroll = true; this.height = 300; si = { field : 'posSupp', direction : 'DESC' }; } else { si = { field : 'sortKey', direction : 'ASC' }; } this.ds = new Ext.data.Store({ proxy : new Ext.data.MemoryProxy([]), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), sortInfo : si }); var columns; if (this.lite) { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }] } else { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'details', header : "Details", dataIndex : 'details', renderer : this.detailsStyler.createDelegate(this), tooltip : "Links for probe-level details", sortable : false, width : 30 }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }, { id : 'go', header : "GO Overlap", dataIndex : "goSim", width : 75, renderer : this.goStyler.createDelegate(this), tooltip : "GO Similarity Score", sortable : true }, { id : 'datasets', header : "Datasets", dataIndex : "datasetVector", renderer : this.bitImageStyler.createDelegate(this), tooltip : "Dataset relevence map", sortable : false }, { id : 'linkOut', dataIndex : "foundGene", header : "More", sortable : false, width : 30, tooltip : "Links to other websites for more information", renderer : this.linkOutStyler }] } Ext.apply(this, { columns : columns }); if (!this.lite) { Ext.apply(this, { tbar : new Ext.Toolbar({ items : [{ hidden : !this.user, pressed : true, enableToggle : true, text : Gemma.SHOW_ONLY_MINE, tooltip : "Click to show/hide results containing only my data", cls : 'x-btn-text-icon details', toggleHandler : this.toggleMyData.createDelegate(this) }, ' ', ' ', { xtype : 'textfield', id : this.id + '-search-in-grid', tabIndex : 1, enableKeyEvents : true, emptyText : 'Find gene in results', listeners : { "keyup" : { fn : this.searchForText.createDelegate(this), scope : this, options : { delay : 100 } } } }] }) }); } Gemma.CoexpressionGrid.superclass.initComponent.call(this); this.on("cellclick", this.rowClickHandler.createDelegate(this), this); }, |
}, { | },{ id : 'gene2GeneProteinAssociationStringUrl', header : "PPI", dataIndex : "gene2GeneProteinAssociationStringUrl", width : 30, renderer : this.proteinlinkStyler.createDelegate(this), tooltip : "Evidence for Protein Protein Interactions from external sources", sortable : true }, { | initComponent : function() { var si; if (this.lite) { this.autoScroll = true; this.height = 300; si = { field : 'posSupp', direction : 'DESC' }; } else { si = { field : 'sortKey', direction : 'ASC' }; } this.ds = new Ext.data.Store({ proxy : new Ext.data.MemoryProxy([]), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), sortInfo : si }); var columns; if (this.lite) { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }] } else { columns = [{ id : 'query', header : "Query Gene", hidden : true, dataIndex : "queryGene", tooltip : "Query Gene", renderer : this.queryGeneStyler.createDelegate(this), sortable : true }, { id : 'details', header : "Details", dataIndex : 'details', renderer : this.detailsStyler.createDelegate(this), tooltip : "Links for probe-level details", sortable : false, width : 30 }, { id : 'visualize', header : "Visualize", dataIndex : "visualize", renderer : this.visStyler.createDelegate(this), tooltip : "Link for visualizing raw data", sortable : false, width : 30 }, { id : 'found', header : "Coexpressed Gene", dataIndex : "foundGene", renderer : this.foundGeneStyler.createDelegate(this), tooltip : "Coexpressed Gene", sortable : true }, { id : 'support', header : "Support", dataIndex : "supportKey", width : 75, renderer : this.supportStyler.createDelegate(this), tooltip : "# of Datasets that confirm coexpression", sortable : true }, { id : 'go', header : "GO Overlap", dataIndex : "goSim", width : 75, renderer : this.goStyler.createDelegate(this), tooltip : "GO Similarity Score", sortable : true }, { id : 'datasets', header : "Datasets", dataIndex : "datasetVector", renderer : this.bitImageStyler.createDelegate(this), tooltip : "Dataset relevence map", sortable : false }, { id : 'linkOut', dataIndex : "foundGene", header : "More", sortable : false, width : 30, tooltip : "Links to other websites for more information", renderer : this.linkOutStyler }] } Ext.apply(this, { columns : columns }); if (!this.lite) { Ext.apply(this, { tbar : new Ext.Toolbar({ items : [{ hidden : !this.user, pressed : true, enableToggle : true, text : Gemma.SHOW_ONLY_MINE, tooltip : "Click to show/hide results containing only my data", cls : 'x-btn-text-icon details', toggleHandler : this.toggleMyData.createDelegate(this) }, ' ', ' ', { xtype : 'textfield', id : this.id + '-search-in-grid', tabIndex : 1, enableKeyEvents : true, emptyText : 'Find gene in results', listeners : { "keyup" : { fn : this.searchForText.createDelegate(this), scope : this, options : { delay : 100 } } } }] }) }); } Gemma.CoexpressionGrid.superclass.initComponent.call(this); this.on("cellclick", this.rowClickHandler.createDelegate(this), this); }, |
var templ = new Ext.XTemplate('<tpl for="."><div ext:qtip="{description}" class="x-combo-list-item">{shortName} - {name}</div></tpl>'); | var templ = new Ext.XTemplate('<tpl for="."><div ext:qtip="{description}" class="x-combo-list-item"><tpl if="troubled"><img src="/Gemma/images/icons/stop.png" /></tpl>{shortName} - {name}</div></tpl>'); | initComponent : function() { var templ = new Ext.XTemplate('<tpl for="."><div ext:qtip="{description}" class="x-combo-list-item">{shortName} - {name}</div></tpl>'); Ext.apply(this, { store : new Ext.data.Store({ sortInfo : { field : 'name', direction : 'ASC' }, proxy : new Ext.data.DWRProxy(ArrayDesignController.getArrayDesigns), reader : new Ext.data.ListRangeReader({ id : "id" }, this.record), remoteSort : false }), tpl : templ }); Gemma.ArrayDesignCombo.superclass.initComponent.call(this); this.store.on('load', function() { this.taxonChanged(this.taxon); }, this); this.store.load({ params : [[], false, true], scope : this, add : false }); this.doQuery(); this.addEvents('arrayDesignchanged'); }, |
node.appendBranchTo(this); | node.appendBranchTo(newParent); | function initDragDrop(table) { // Configure draggable nodes $(options.dragTarget).draggable({ helper: function () { var helper = $(this).clone() helper.find('span.expander').remove(); return helper; }, opacity: .75, refreshPositions: true, // Performance? revert: "invalid", revertDuration: 300, scroll: true }); // If we want a sortable one then we need to create a ghosted row if(options.sortable) { var cell_count = $(options.dropTarget).parents("tr").find("td").length; ghost_row = $("<tr class=\"ghost_row\"><td colspan=\""+cell_count+"\"><span class=\"ghost_text\">Drop here to reorder</span></td></tr>"); ghost_row.insertBefore($(table).find("tr:first")); ghost_row.hide(); } // Configure droppable nodes $(options.dropTarget).droppable({ accept: options.dragTarget, drop: function(e, ui) { if(options.sortable) ghost_row.hide(); var node = $($(ui.draggable).parents("tr")); // Move the branch when we drop on it node.appendBranchTo(this); // Custom callback options.dropCallback(node, $(this), e, ui); }, hoverClass: "accept", over: function(e, ui) { // Deal with displaying the ghost row when sorting if(options.sortable) { var my_par = $(this).parentOf(); var draggy_par = $(ui.draggable.parents("tr")).parentOf(); if(my_par != undefined && draggy_par != undefined) { if(my_par[0].id == draggy_par[0].id && $(this)[0].id != $(ui.draggable.parents("tr"))[0].id) { ghost_row.insertAfter(this); ghost_row.show(); } else $(ghost_row).hide(); } } if(this.id != ui.draggable.parents("tr")[0].id && !$(this).is(".expanded")) $(this).expand(); } }); // Sort out resorting if we have it enabled if(options.sortable) { $("tr td span.ghost_text").each(function() { $(this).parents("tr").droppable( { accept: options.dragTarget, drop: function(e, ui) { ghost_row.hide(); var node = $(ui.draggable.parents("tr")); var newPrevious = $(this).prev("tr") node.moveBranchAfter(newPrevious); // Custom callback options.sortableDropCallback(node, newPrevious, e, ui); } }); }); } }; |
options.dropCallback(node, $(this), e, ui); | options.dropCallback(node, newParent, e, ui); | function initDragDrop(table) { // Configure draggable nodes $(options.dragTarget).draggable({ helper: function () { var helper = $(this).clone() helper.find('span.expander').remove(); return helper; }, opacity: .75, refreshPositions: true, // Performance? revert: "invalid", revertDuration: 300, scroll: true }); // If we want a sortable one then we need to create a ghosted row if(options.sortable) { var cell_count = $(options.dropTarget).parents("tr").find("td").length; ghost_row = $("<tr class=\"ghost_row\"><td colspan=\""+cell_count+"\"><span class=\"ghost_text\">Drop here to reorder</span></td></tr>"); ghost_row.insertBefore($(table).find("tr:first")); ghost_row.hide(); } // Configure droppable nodes $(options.dropTarget).droppable({ accept: options.dragTarget, drop: function(e, ui) { if(options.sortable) ghost_row.hide(); var node = $($(ui.draggable).parents("tr")); // Move the branch when we drop on it node.appendBranchTo(this); // Custom callback options.dropCallback(node, $(this), e, ui); }, hoverClass: "accept", over: function(e, ui) { // Deal with displaying the ghost row when sorting if(options.sortable) { var my_par = $(this).parentOf(); var draggy_par = $(ui.draggable.parents("tr")).parentOf(); if(my_par != undefined && draggy_par != undefined) { if(my_par[0].id == draggy_par[0].id && $(this)[0].id != $(ui.draggable.parents("tr"))[0].id) { ghost_row.insertAfter(this); ghost_row.show(); } else $(ghost_row).hide(); } } if(this.id != ui.draggable.parents("tr")[0].id && !$(this).is(".expanded")) $(this).expand(); } }); // Sort out resorting if we have it enabled if(options.sortable) { $("tr td span.ghost_text").each(function() { $(this).parents("tr").droppable( { accept: options.dragTarget, drop: function(e, ui) { ghost_row.hide(); var node = $(ui.draggable.parents("tr")); var newPrevious = $(this).prev("tr") node.moveBranchAfter(newPrevious); // Custom callback options.sortableDropCallback(node, newPrevious, e, ui); } }); }); } }; |
}; | } | function initDragDrop(table) { // Configure draggable nodes $(options.dragTarget).draggable({ helper: function () { var helper = $(this).clone() helper.find('span.expander').remove(); return helper; }, opacity: .75, refreshPositions: true, // Performance? revert: "invalid", revertDuration: 300, scroll: true }); // If we want a sortable one then we need to create a ghosted row if(options.sortable) { var cell_count = $(options.dropTarget).parents("tr").find("td").length; ghost_row = $("<tr class=\"ghost_row\"><td colspan=\""+cell_count+"\"><span class=\"ghost_text\">Drop here to reorder</span></td></tr>"); ghost_row.insertBefore($(table).find("tr:first")); ghost_row.hide(); } // Configure droppable nodes $(options.dropTarget).droppable({ accept: options.dragTarget, drop: function(e, ui) { if(options.sortable) ghost_row.hide(); var node = $($(ui.draggable).parents("tr")); // Move the branch when we drop on it node.appendBranchTo(this); // Custom callback options.dropCallback(node, $(this), e, ui); }, hoverClass: "accept", over: function(e, ui) { // Deal with displaying the ghost row when sorting if(options.sortable) { var my_par = $(this).parentOf(); var draggy_par = $(ui.draggable.parents("tr")).parentOf(); if(my_par != undefined && draggy_par != undefined) { if(my_par[0].id == draggy_par[0].id && $(this)[0].id != $(ui.draggable.parents("tr"))[0].id) { ghost_row.insertAfter(this); ghost_row.show(); } else $(ghost_row).hide(); } } if(this.id != ui.draggable.parents("tr")[0].id && !$(this).is(".expanded")) $(this).expand(); } }); // Sort out resorting if we have it enabled if(options.sortable) { $("tr td span.ghost_text").each(function() { $(this).parents("tr").droppable( { accept: options.dragTarget, drop: function(e, ui) { ghost_row.hide(); var node = $(ui.draggable.parents("tr")); var newPrevious = $(this).prev("tr") node.moveBranchAfter(newPrevious); // Custom callback options.sortableDropCallback(node, newPrevious, e, ui); } }); }); } }; |
if( !gallery) { gallery = new dojo.rpc.JsonService( photark.constants.GalleryServiceEndpoint ); } | function initGallery() { try { if( !gallery) { gallery = new dojo.rpc.JsonService( photark.constants.GalleryServiceEndpoint ); } gallery.getAlbums().addCallback(gallery_getAlbumsResponse); } catch(exception) { alert(exception); }} |
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gallery.getAlbums().addCallback(gallery_getAlbumsResponse); | gallery.getAlbumsToUser(SECURITY_TOKEN).addCallback(gallery_getAlbumsResponse); | function initGallery() { try { gallery.getAlbums().addCallback(gallery_getAlbumsResponse); } catch(exception) { alert(exception); }} |
org_hudsonci_buildMonitorManager.getPreferences().upgrade(); | org_hudsonci.initialise = function() { org_hudsonci_buildMonitorManager.getBuildMonitor().prepare(); org_hudsonci_buildMonitorManager.getAddFeedWindow().setMenuVisibility(); org_hudsonci.schedule();}; |
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initialize: function(element, vertical){ | initialize: function(element, vertical, params){ | initialize: function(element, vertical){ // capture the original string this.originalContents = element.innerHTML; this.element = element; // fill the element with invisible spans this.element.innerHTML = this.originalContents.stripTags().fragment(vertical); // make the actual element visible this.element.style.display = 'block'; var selector = '#'+this.element.id+' span.appearing-letter'; var spans = $$(selector); var spanIndex = 0; new PeriodicalExecuter(function(){ if(spanIndex < spans.length){ spans[spanIndex].id = element.id+'-letter-'+spanIndex; new Effect.Appear(spans[spanIndex].id, {duration:0.5}); spanIndex++; } }, 0.08); } |
new Effect.Appear(spans[spanIndex].id, {duration:0.5}); | new Effect.Appear(spans[spanIndex].id, {duration: 0.4}); | initialize: function(element, vertical){ // capture the original string this.originalContents = element.innerHTML; this.element = element; // fill the element with invisible spans this.element.innerHTML = this.originalContents.stripTags().fragment(vertical); // make the actual element visible this.element.style.display = 'block'; var selector = '#'+this.element.id+' span.appearing-letter'; var spans = $$(selector); var spanIndex = 0; new PeriodicalExecuter(function(){ if(spanIndex < spans.length){ spans[spanIndex].id = element.id+'-letter-'+spanIndex; new Effect.Appear(spans[spanIndex].id, {duration:0.5}); spanIndex++; } }, 0.08); } |
}, 0.08); | }, this.interval); | initialize: function(element, vertical){ // capture the original string this.originalContents = element.innerHTML; this.element = element; // fill the element with invisible spans this.element.innerHTML = this.originalContents.stripTags().fragment(vertical); // make the actual element visible this.element.style.display = 'block'; var selector = '#'+this.element.id+' span.appearing-letter'; var spans = $$(selector); var spanIndex = 0; new PeriodicalExecuter(function(){ if(spanIndex < spans.length){ spans[spanIndex].id = element.id+'-letter-'+spanIndex; new Effect.Appear(spans[spanIndex].id, {duration:0.5}); spanIndex++; } }, 0.08); } |
}; | } | function initialize(node) { if(!node.hasClass("initialized")) { node.addClass("initialized"); var childNodes = childrenOf(node); if(!node.hasClass("parent") && childNodes.length > 0) { node.addClass("parent"); } if(node.hasClass("parent")) { var cell = $(node.children("td")[options.treeColumn]); var padding = getPaddingLeft(cell) + options.indent; childNodes.each(function() { $(this).children("td")[options.treeColumn].style.paddingLeft = padding + "px"; }); add_expandable_widget(node); } } }; |
$('#password_forgotten_link').click(function() { $('#password_forgotten').slideToggle('fast'); }); | $('#password_forgotten_link').click(function() { $('#password_forgotten').slideToggle('fast'); $('input.request_password').focus(); }); | function initialize_login_form() { $('#password_forgotten_link').click(function() { $('#password_forgotten').slideToggle('fast'); }); $('input.text_field:first').focus();} |
function initialize_signup_form(locale, username_in_use_message, email_in_use_message, captcha_message) { | function initialize_signup_form(locale, username_in_use_message, invalid_username_message, email_in_use_message, captcha_message) { | function initialize_signup_form(locale, username_in_use_message, email_in_use_message, captcha_message) { $('#help_captcha_link').click(function() { $('#help_captcha').lightbox_me({centered: true}); }); $('#terms_link').click(function() { $('#terms').lightbox_me({centered: true}); }); $("input[type=checkbox]").uniform(); translate_validation_messages(locale); var form_id = "#new_person" $(form_id).validate({ errorPlacement: function(error, element) { if (element.attr("name") == "person[terms]") { error.appendTo(element.parent().parent().parent().parent().parent()); } else if (element.attr("name") == "recaptcha_response_field") { error.appendTo(element.parent().parent().parent().parent().parent().parent().parent().parent().parent()); } else { error.insertAfter(element); } }, rules: { "person[username]": {required: true, minlength: 3, maxlength: 20, remote: "/people/check_username_availability"}, "person[given_name]": {required: true, minlength: 2, maxlength: 30}, "person[family_name]": {required: true, minlength: 2, maxlength: 30}, "person[email]": {required: true, email: true, remote: "/people/check_email_availability"}, "person[terms]": "required", "person[password]": { required: true, minlength: 4 }, "person[password2]": { required: true, minlength: 4, equalTo: "#person_password" }, "recaptcha_response_field": {required: true, captcha: true } }, messages: { "recaptcha_response_field": { captcha: captcha_message }, "person[username]": { remote: username_in_use_message }, "person[email]": { remote: email_in_use_message }, }, onkeyup: false, //Only do validations when form focus changes to avoid exessive ASI calls submitHandler: function(form) { disable_and_submit(form_id, form, locale, "false"); } }); } |
"person[username]": {required: true, minlength: 3, maxlength: 20, remote: "/people/check_username_availability"}, | "person[username]": {required: true, minlength: 3, maxlength: 20, valid_username: true, remote: "/people/check_username_availability"}, | function initialize_signup_form(locale, username_in_use_message, email_in_use_message, captcha_message) { $('#help_captcha_link').click(function() { $('#help_captcha').lightbox_me({centered: true}); }); $('#terms_link').click(function() { $('#terms').lightbox_me({centered: true}); }); $("input[type=checkbox]").uniform(); translate_validation_messages(locale); var form_id = "#new_person" $(form_id).validate({ errorPlacement: function(error, element) { if (element.attr("name") == "person[terms]") { error.appendTo(element.parent().parent().parent().parent().parent()); } else if (element.attr("name") == "recaptcha_response_field") { error.appendTo(element.parent().parent().parent().parent().parent().parent().parent().parent().parent()); } else { error.insertAfter(element); } }, rules: { "person[username]": {required: true, minlength: 3, maxlength: 20, remote: "/people/check_username_availability"}, "person[given_name]": {required: true, minlength: 2, maxlength: 30}, "person[family_name]": {required: true, minlength: 2, maxlength: 30}, "person[email]": {required: true, email: true, remote: "/people/check_email_availability"}, "person[terms]": "required", "person[password]": { required: true, minlength: 4 }, "person[password2]": { required: true, minlength: 4, equalTo: "#person_password" }, "recaptcha_response_field": {required: true, captcha: true } }, messages: { "recaptcha_response_field": { captcha: captcha_message }, "person[username]": { remote: username_in_use_message }, "person[email]": { remote: email_in_use_message }, }, onkeyup: false, //Only do validations when form focus changes to avoid exessive ASI calls submitHandler: function(form) { disable_and_submit(form_id, form, locale, "false"); } }); } |
"person[username]": { remote: username_in_use_message }, | "person[username]": { valid_username: invalid_username_message, remote: username_in_use_message }, | function initialize_signup_form(locale, username_in_use_message, email_in_use_message, captcha_message) { $('#help_captcha_link').click(function() { $('#help_captcha').lightbox_me({centered: true}); }); $('#terms_link').click(function() { $('#terms').lightbox_me({centered: true}); }); $("input[type=checkbox]").uniform(); translate_validation_messages(locale); var form_id = "#new_person" $(form_id).validate({ errorPlacement: function(error, element) { if (element.attr("name") == "person[terms]") { error.appendTo(element.parent().parent().parent().parent().parent()); } else if (element.attr("name") == "recaptcha_response_field") { error.appendTo(element.parent().parent().parent().parent().parent().parent().parent().parent().parent()); } else { error.insertAfter(element); } }, rules: { "person[username]": {required: true, minlength: 3, maxlength: 20, remote: "/people/check_username_availability"}, "person[given_name]": {required: true, minlength: 2, maxlength: 30}, "person[family_name]": {required: true, minlength: 2, maxlength: 30}, "person[email]": {required: true, email: true, remote: "/people/check_email_availability"}, "person[terms]": "required", "person[password]": { required: true, minlength: 4 }, "person[password2]": { required: true, minlength: 4, equalTo: "#person_password" }, "recaptcha_response_field": {required: true, captcha: true } }, messages: { "recaptcha_response_field": { captcha: captcha_message }, "person[username]": { remote: username_in_use_message }, "person[email]": { remote: email_in_use_message }, }, onkeyup: false, //Only do validations when form focus changes to avoid exessive ASI calls submitHandler: function(form) { disable_and_submit(form_id, form, locale, "false"); } }); } |
function initialize_update_account_info_form(locale, change_text, cancel_text, email_default, pw1_default, pw2_default) { | function initialize_update_account_info_form(locale, change_text, cancel_text, email_default, pw1_default, pw2_default, email_in_use_message) { | function initialize_update_account_info_form(locale, change_text, cancel_text, email_default, pw1_default, pw2_default) { $('#account_email_link').toggle( function() { $('#account_email_content').hide(); $('#account_email_form').show(); $(this).text(cancel_text); $('#person_email').watermark(email_default, {className: 'default_text'}); $('#person_email').focus(); }, function() { $('#account_email_content').show(); $('#account_email_form').hide(); $(this).text(change_text); } ); $('#account_password_link').toggle( function() { $('#account_password_content').hide(); $('#account_password_form').show(); $(this).text(cancel_text); $('#person_password').watermark(pw1_default, {className: 'default_text'}); $('#person_password2').watermark(pw2_default, {className: 'default_text'}); $('#person_password').focus(); }, function() { $('#account_password_content').show(); $('#account_password_form').hide(); $(this).text(change_text); } ); translate_validation_messages(locale); var email_form_id = "#email_form" $(email_form_id).validate({ errorClass: "error_account", rules: { "person[email]": {required: true, email: true, remote: "/people/check_email_availability"}, }, submitHandler: function(form) { disable_and_submit(email_form_id, form, locale, "false"); } }); var password_form_id = "#password_form" $(password_form_id).validate({ errorClass: "error_account", rules: { "person[password]": { required: true, minlength: 4 }, "person[password2]": { required: true, minlength: 4, equalTo: "#person_password" } }, submitHandler: function(form) { disable_and_submit(password_form_id, form, locale, "false"); } }); } |
messages: { "person[email]": { remote: email_in_use_message }, }, | function initialize_update_account_info_form(locale, change_text, cancel_text, email_default, pw1_default, pw2_default) { $('#account_email_link').toggle( function() { $('#account_email_content').hide(); $('#account_email_form').show(); $(this).text(cancel_text); $('#person_email').watermark(email_default, {className: 'default_text'}); $('#person_email').focus(); }, function() { $('#account_email_content').show(); $('#account_email_form').hide(); $(this).text(change_text); } ); $('#account_password_link').toggle( function() { $('#account_password_content').hide(); $('#account_password_form').show(); $(this).text(cancel_text); $('#person_password').watermark(pw1_default, {className: 'default_text'}); $('#person_password2').watermark(pw2_default, {className: 'default_text'}); $('#person_password').focus(); }, function() { $('#account_password_content').show(); $('#account_password_form').hide(); $(this).text(change_text); } ); translate_validation_messages(locale); var email_form_id = "#email_form" $(email_form_id).validate({ errorClass: "error_account", rules: { "person[email]": {required: true, email: true, remote: "/people/check_email_availability"}, }, submitHandler: function(form) { disable_and_submit(email_form_id, form, locale, "false"); } }); var password_form_id = "#password_form" $(password_form_id).validate({ errorClass: "error_account", rules: { "person[password]": { required: true, minlength: 4 }, "person[password2]": { required: true, minlength: 4, equalTo: "#person_password" } }, submitHandler: function(form) { disable_and_submit(password_form_id, form, locale, "false"); } }); } |
|
if (permissions.indexOf("|deleteImagesFromAlbum.others|") != -1 || (permissions.indexOf("|deleteImagesFromAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".deleteImages|") != -1) { | if (userId == "SuperAdmin" || (albums[albumIndex].owners + "").indexOf(userId) != -1 || permissions.indexOf("|" + albumName + ".deleteImages|") != -1) { | function initializeAdminGallery() { var remove = false; if (permissions.indexOf("|deleteImagesFromAlbum.others|") != -1 || (permissions.indexOf("|deleteImagesFromAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".deleteImages|") != -1) { remove = true; } var table = document.getElementById('adminTableGallery'); var lastRow = table.rows.length; for (var i = 0; i < albums[albumIndex].pictures.length;) { var row = table.insertRow(Math.floor(i / 4)); for (var j = 0; j < 4; j++) { var column = row.insertCell(i % 4); if (albums[albumIndex].pictures[i] != null) { var albumName = albums[albumIndex].name; var img = document.createElement("img"); img.src = (window.location.href).replace("admin/upload.html", "") + "gallery/" + albumName + "/" + albums[albumIndex].pictures[i]; var img_html = "<img src=" + img.src + " class=\"slideImage\" width=200px ondragstart=\"return false\" onselectstart=\"return false\" oncontextmenu=\"return false\" galleryimg=\"no\" usemap=\"#imagemap\" alt=\"\"/>"; if (remove) { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td><a href=\"javascript:confirmDelete('" + albums[albumIndex].pictures[i] + "');\">Remove</a></td></tr></table>"; } else { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td></td></tr></table>"; } column.innerHTML = html; } i++; } }} |
var albumName = albums[albumIndex].name; | function initializeAdminGallery() { var remove = false; if (permissions.indexOf("|deleteImagesFromAlbum.others|") != -1 || (permissions.indexOf("|deleteImagesFromAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".deleteImages|") != -1) { remove = true; } var table = document.getElementById('adminTableGallery'); var lastRow = table.rows.length; for (var i = 0; i < albums[albumIndex].pictures.length;) { var row = table.insertRow(Math.floor(i / 4)); for (var j = 0; j < 4; j++) { var column = row.insertCell(i % 4); if (albums[albumIndex].pictures[i] != null) { var albumName = albums[albumIndex].name; var img = document.createElement("img"); img.src = (window.location.href).replace("admin/upload.html", "") + "gallery/" + albumName + "/" + albums[albumIndex].pictures[i]; var img_html = "<img src=" + img.src + " class=\"slideImage\" width=200px ondragstart=\"return false\" onselectstart=\"return false\" oncontextmenu=\"return false\" galleryimg=\"no\" usemap=\"#imagemap\" alt=\"\"/>"; if (remove) { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td><a href=\"javascript:confirmDelete('" + albums[albumIndex].pictures[i] + "');\">Remove</a></td></tr></table>"; } else { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td></td></tr></table>"; } column.innerHTML = html; } i++; } }} |
|
var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td><a href=\"javascript:confirmDelete('" + albums[albumIndex].pictures[i] + "');\">Remove</a></td></tr></table>"; | var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td><a href=\"javascript:confirmDelete('" + albums[albumIndex].pictures[i] + "','image');\">Remove</a></td></tr></table>"; | function initializeAdminGallery() { var remove = false; if (permissions.indexOf("|deleteImagesFromAlbum.others|") != -1 || (permissions.indexOf("|deleteImagesFromAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".deleteImages|") != -1) { remove = true; } var table = document.getElementById('adminTableGallery'); var lastRow = table.rows.length; for (var i = 0; i < albums[albumIndex].pictures.length;) { var row = table.insertRow(Math.floor(i / 4)); for (var j = 0; j < 4; j++) { var column = row.insertCell(i % 4); if (albums[albumIndex].pictures[i] != null) { var albumName = albums[albumIndex].name; var img = document.createElement("img"); img.src = (window.location.href).replace("admin/upload.html", "") + "gallery/" + albumName + "/" + albums[albumIndex].pictures[i]; var img_html = "<img src=" + img.src + " class=\"slideImage\" width=200px ondragstart=\"return false\" onselectstart=\"return false\" oncontextmenu=\"return false\" galleryimg=\"no\" usemap=\"#imagemap\" alt=\"\"/>"; if (remove) { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td><a href=\"javascript:confirmDelete('" + albums[albumIndex].pictures[i] + "');\">Remove</a></td></tr></table>"; } else { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td></td></tr></table>"; } column.innerHTML = html; } i++; } }} |
var table=document.getElementById('adminTableGallery'); | var remove = false; if (permissions.indexOf("|deleteImagesFromAlbum.others|") != -1 || (permissions.indexOf("|deleteImagesFromAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".deleteImages|") != -1) { remove = true; } var table = document.getElementById('adminTableGallery'); | function initializeAdminGallery() { var table=document.getElementById('adminTableGallery'); var lastRow = table.rows.length; for (var i = 0; i < albums[albumIndex].pictures.length;) { var row = table.insertRow( Math.floor(i/4)); for (var j = 0; j < 4;j++) { var column = row.insertCell(i%4); if (albums[albumIndex].pictures[i] != null) { var albumName = albums[albumIndex].name; var img = document.createElement("img"); img.src = (window.location.href).replace("admin/upload.html","") + "gallery/"+ albumName +"/" + albums[albumIndex].pictures[i]; var img_html = "<img src=" + img.src + " class=\"slideImage\" width=200px ondragstart=\"return false\" onselectstart=\"return false\" oncontextmenu=\"return false\" galleryimg=\"no\" usemap=\"#imagemap\" alt=\"\"/>"; var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>"+albums[albumIndex].pictures[i]+"</td><td><a href=\"javascript:confirmDelete('"+albums[albumIndex].pictures[i]+"');\">Remove</a></td></tr></table>"; column.innerHTML = html; } i++; } }} |
var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>"+albums[albumIndex].pictures[i]+"</td><td><a href=\"javascript:confirmDelete('"+albums[albumIndex].pictures[i]+"');\">Remove</a></td></tr></table>"; | if (remove) { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td><a href=\"javascript:confirmDelete('" + albums[albumIndex].pictures[i] + "');\">Remove</a></td></tr></table>"; } else { var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>" + albums[albumIndex].pictures[i] + "</td><td></td></tr></table>"; } | function initializeAdminGallery() { var table=document.getElementById('adminTableGallery'); var lastRow = table.rows.length; for (var i = 0; i < albums[albumIndex].pictures.length;) { var row = table.insertRow( Math.floor(i/4)); for (var j = 0; j < 4;j++) { var column = row.insertCell(i%4); if (albums[albumIndex].pictures[i] != null) { var albumName = albums[albumIndex].name; var img = document.createElement("img"); img.src = (window.location.href).replace("admin/upload.html","") + "gallery/"+ albumName +"/" + albums[albumIndex].pictures[i]; var img_html = "<img src=" + img.src + " class=\"slideImage\" width=200px ondragstart=\"return false\" onselectstart=\"return false\" oncontextmenu=\"return false\" galleryimg=\"no\" usemap=\"#imagemap\" alt=\"\"/>"; var html = "<table border=\"0\" style=\"width:180px; text-align: center;\"><tr style=\"cellpadding:10\"><td colspan=\"2\"><a>" + img_html + "</a></td></tr><tr><td>"+albums[albumIndex].pictures[i]+"</td><td><a href=\"javascript:confirmDelete('"+albums[albumIndex].pictures[i]+"');\">Remove</a></td></tr></table>"; column.innerHTML = html; } i++; } }} |
function initializeAlbum(albumName) { | function initializeAlbum(albumName,imageName) { | function initializeAlbum(albumName) { try { this.albumName = albumName; // gallery.getAlbumPictures(albumName).addCallback(gallery_getAlbumPicturesResponse); gallery.getAlbumPicturesToUser(albumName,SECURITY_TOKEN).addCallback(gallery_getAlbumPicturesResponse); } catch(exception) { alert(e); }} |
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