h4iku/coconut_javascript2010_preprocessed · Datasets at Hugging Face

gallery.getAlbumPicturesToUser(albumName,SECURITY_TOKEN).addCallback(gallery_getAlbumPicturesResponse);

albumImageToBeLoaded = imageName; albumTags = new Array(); gallery.getAlbumPicturesToUser(albumName,SECURITY_TOKEN).addCallback(gallery_getAlbumPicturesResponse);

gallery.getAlbumPictures(albumName).addCallback(gallery_getAlbumPicturesResponse);

gallery.getAlbumPicturesToUser(albumName,SECURITY_TOKEN).addCallback(gallery_getAlbumPicturesResponse);

function initializeAlbum(albumName) { try { this.albumName = albumName; gallery.getAlbumPictures(albumName).addCallback(gallery_getAlbumPicturesResponse); } catch(exception) { alert(e); }}

var html = "<a href=\"javascript:initializeAlbum('" + albumName + "')\">" + img_html + "</a>";

var html = "<a href=\"javascript:initializeAlbum('" + albumName + "', null)\">" + img_html + "</a>";

var p = new Jx.Plugin[this.pluginNamespace][plugin.name](plugin.options);

var p = new Jx.Plugin[this.pluginNamespace][plugin.name.capitalize()](plugin.options);

initPlugins: function () { //pluginNamespace must be defined in order to pass plugins to the object if ($defined(this.pluginNamespace)) { if ($defined(this.options.plugins) && Jx.type(this.options.plugins) === 'array') { this.options.plugins.each(function (plugin) { if (plugin instanceof Jx.Plugin) { plugin.attach(this); this.plugins.set(plugin.name, plugin); } else if (Jx.type(plugin) === 'object') { //All plugin-enabled objects should define a pluginNamespace member variable //that is used for locating the plugins. The default namespace is 'Other' for //now until we come up with a better idea var p = new Jx.Plugin[this.pluginNamespace][plugin.name](plugin.options); p.attach(this); //this.plugins.set(p.name, p); } }, this); } } },

} else if (Jx.type(plugin) === 'string') { var p = new Jx.Plugin[this.pluginNamespace][plugin.capitalize()](); p.attach(this);

initPlugins: function () { //pluginNamespace must be defined in order to pass plugins to the object if ($defined(this.pluginNamespace)) { if ($defined(this.options.plugins) && Jx.type(this.options.plugins) === 'array') { this.options.plugins.each(function (plugin) { if (plugin instanceof Jx.Plugin) { plugin.attach(this); this.plugins.set(plugin.name, plugin); } else if (Jx.type(plugin) === 'object') { //All plugin-enabled objects should define a pluginNamespace member variable //that is used for locating the plugins. The default namespace is 'Other' for //now until we come up with a better idea var p = new Jx.Plugin[this.pluginNamespace][plugin.name](plugin.options); p.attach(this); //this.plugins.set(p.name, p); } }, this); } } },

searchService = new dojo.rpc.JsonService( photark.constants.SearchServiceEndpoint );

function initServices(){ gallery = new dojo.rpc.JsonService( photark.constants.GalleryServiceEndpoint );}

getColumnProperties: function(colid, col, props) {}

getColumnProperties: function(colid, col, props) {}, cycleHeader: function(col) {}

initView: function() { treeFeeds = this.preferences.getFeeds(); this.treeView = { rowCount : NUM_OF_FEEDS, getCellText : function(row, column) { if (row < treeFeeds.length) { var text = null; if (column.id == 'buildmonitor-prefs-feeds-name') { text = treeFeeds[row].getName(); } else if (column.id == 'buildmonitor-prefs-feeds-url') { text = treeFeeds[row].getUrl(); } return text; } }, isEditable: function isEditable(row, column) { var isEditable = true; if (column.id == 'buildmonitor-prefs-feeds-remove' || column.id == 'buildmonitor-prefs-feeds-up' || column.id == 'buildmonitor-prefs-feeds-down') { isEditable = false; } return isEditable; }, setCellText : function(row, column, value) { if (column.id == 'buildmonitor-prefs-feeds-name') { treeFeeds[row].setName(value); } else if (column.id == 'buildmonitor-prefs-feeds-url') { treeFeeds[row].setUrl(value); } }, setTree: function(treebox) { this.treebox = treebox; }, isContainer: function(row) { return false; }, isSeparator: function(row) { return false; }, isSorted: function() { return false; }, getLevel: function(row) { return 0; }, getImageSrc: function(row, column) { var imageSrc = null; if (column.id == 'buildmonitor-prefs-feeds-remove' && !treeFeeds[row].isIgnored()) { imageSrc = 'chrome://buildmonitor/skin/menu/remove.png'; } else if (column.id == 'buildmonitor-prefs-feeds-up' && !treeFeeds[row].isIgnored() && row > 0) { imageSrc = 'chrome://buildmonitor/skin/menu/up.png'; } else if (column.id == 'buildmonitor-prefs-feeds-down' && !treeFeeds[row].isIgnored() && row < NUM_OF_FEEDS - 1) { imageSrc = 'chrome://buildmonitor/skin/menu/down.png'; } return imageSrc; }, getRowProperties: function(row, props) {}, getCellProperties: function(row, col, props) {}, getColumnProperties: function(colid, col, props) {} }; document.getElementById('buildmonitor-prefs-feeds').view = this.treeView; },

this.log("inputBlur: loose input component focus");

inputBlur: function() { this.log("inputBlur: loose input component focus"); this.input.blur(); },

this.log("inputFocus: restore input component focus");

inputFocus: function() { this.log("inputFocus: restore input component focus"); this.input.focus(); if (this.getCurrentTextValue().length) { this.selectAll(); } },

input.style.color = default_color; if (input.value == placeholder) { input.value = ''; }

input.style.color = default_color; if (input.getAttribute('data-placeholder-visible')) { input.setAttribute('data-placeholder-visible', ''); input.value = ''; }

if (input.value == placeholder) {

if (input.getAttribute('data-placeholder-visible')) {

if (!this.options.rest) {

if (this.options.rest) {

insert: function (record, options) { if (!this.options.rest) { options = $merge({url: this.options.urls.rest},options); } else { options = $merge({url: this.options.urls.insert},options); } this.options.requestOptions.method = 'POST'; return this.run(record, options, "insert"); },

ss.styleSheet.cssText += text; rule = ss.sheet.rules[ss.insertRule.length];

if (declaration == '') { declaration = '{}'; } var index = ss.styleSheet.addRule(selector,declaration); rule = ss.styleSheet.rules[index];

insertCssRule: function (selector, declaration, styleSheetName) { var ss = this.getDynamicStyleSheet(styleSheetName); var rule; var text = selector + " {" + declaration + "}"; if (Browser.Engine.name === 'trident') { ss.styleSheet.cssText += text; rule = ss.sheet.rules[ss.insertRule.length]; } else { ss.sheet.insertRule(text, ss.indicies.length); rule = ss.sheet.cssRules[ss.indicies.length]; } ss.indicies.push(selector); return rule; },

target.find(".tickLabels").remove();

placeholder.find(".tickLabels").remove();

target.append(html.join(""));

placeholder.append(html.join(""));

return this.button.isActive();

return this.button ? this.button.isActive() : this.options.active;

isActive: function() { return this.button.isActive(); },

var date=getDateFromFormat(val,format);

var date=com_mattkruse_getDateFromFormat(val,format);

function isDate(val,format) { var date=getDateFromFormat(val,format); if (date==0) { return false; } return true; }

return this.button.isEnabled;

return this.button ? this.button.isEnabled() : this.options.enabled ;

isEnabled: function() { return this.button.isEnabled; },

return i == len && $.isFunction(obj) ? obj : false;

return obj && i == len && typeof obj != 'string' && !obj.nodeName && obj.constructor != Array && /^[\s[]?function/.test(obj + '') ? obj : false;

var isFunc = function(str, scope) { var obj = scope || appWindow; var parts = str.split('.'), len = parts.length; for (var i = 0; i < len && (obj = obj[parts[i]]); i++); return i == len && $.isFunction(obj) ? obj : false;}

for (i=0; i < sText.length && IsNumber == true; i++) {

for (var i=0; i < sText.length && IsNumber == true; i++) {

In2iGui.callDelegates(this,'itemWasClicked',value); In2iGui.callDelegates(this,'select',value);

this.fire('itemWasClicked',value); this.fire('select',value);

itemWasClicked : function(value) { this.value = value; In2iGui.callDelegates(this,'itemWasClicked',value); In2iGui.callDelegates(this,'select',value); this.hide(); },

searchStr = searchStr + key + '=' + escape(params[key][i]) + '&';

searchStr = searchStr + key + '=' + encodeURIComponent(params[key][i]) + '&';

Testopia.Util.JSONToURLQuery = function(params, searchStr, drops){ searchStr = searchStr || ''; for (var key in params) { if (drops.indexOf(key) != -1) { continue; } if (typeof params[key] == 'object') { for (i = 0; i < params[key].length; i++) { searchStr = searchStr + key + '=' + escape(params[key][i]) + '&'; } } else { searchStr = searchStr + key + '=' + escape(params[key]) + '&'; } } if (searchStr.lastIndexOf('&') == searchStr.length - 1) { searchStr = searchStr.substr(0, searchStr.length - 1); } return searchStr;};

searchStr = searchStr + key + '=' + escape(params[key]) + '&';

searchStr = searchStr + key + '=' + encodeURIComponent(params[key]) + '&';

Testopia.Util.JSONToURLQuery = function(params, searchStr, drops){ searchStr = searchStr || ''; for (var key in params) { if (drops.indexOf(key) != -1) { continue; } if (typeof params[key] == 'object') { for (i = 0; i < params[key].length; i++) { searchStr = searchStr + key + '=' + escape(params[key][i]) + '&'; } } else { searchStr = searchStr + key + '=' + escape(params[key]) + '&'; } } if (searchStr.lastIndexOf('&') == searchStr.length - 1) { searchStr = searchStr.substr(0, searchStr.length - 1); } return searchStr;};

function key(k) {

key = function(k) {

function key(k) { unused[k] = false; if (keys[k]) return true; }

if (keys[k])

if (keyState[k])

function key(k) { unused[k] = false; if (keys[k]) return true; }

key.used[k] = true;

key.unused[k] = false;

function key(k) { key.used[k] = true; if (key.keys[k]) return true;}

};

}

function lastChildOf(node) { return $("table.treeTable tbody tr." + options.childPrefix + node[0].id+":last"); };

dbg(line);

dbg(string);dbg(string.startsWith('#'));dbg(string.startsWith("

this.set_article_path = function () {

function set_article_path(e) {

this.document_add_all_events = function (e) {

function document_add_all_events (e) {

lnblog.addEvent(window, 'load', this.document_add_all_events);

lnblog.addEvent(window, 'load', document_add_all_events);

function upload_add_link(e) {

this.upload_add_link = function (e) {

lnblog.addEvent(uploads[i], 'change', upload_add_link);

lnblog.addEvent(uploads[i], 'change', self.upload_add_link);

var runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doLinks(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" alt="link analysis" title="link analysis"/></a>';

var runurl = '<span style="cursor:pointer" onClick="return Ext.getCmp(\'eemanager\').doLinks(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" alt="link analysis" title="link analysis"/></span>';

linkAnalysisRenderer : function(ee) { var id = ee.id; var runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doLinks(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" alt="link analysis" title="link analysis"/></a>'; if (ee.dateLinkAnalysis) { var type = ee.linkAnalysisEventType; var color = "#000"; var suggestRun = true; var qtip = 'ext:qtip="OK"'; if (type == 'FailedLinkAnalysisEventImpl') { color = 'red'; qtip = 'ext:qtip="Failed"'; } else if (type == 'TooSmallDatasetLinkAnalysisEventImpl') { color = '#CCC'; qtip = 'ext:qtip="Too small"'; suggestRun = false; } return '<span style="color:' + color + ';" ' + qtip + '>' + Ext.util.Format.date(ee.dateLinkAnalysis, 'y/M/d') + ' ' + (suggestRun ? runurl : ''); } else { return '<span style="color:#3A3;">Needed</span> ' + runurl; } },

runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doLinks(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" ext:qtip="Run coexpression analysis" alt="link analysis" /></a>';

runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doLinks(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" ext:qtip="Run coexpression analysis" alt="link analysis" /></a>'; } if (record.get('bioAssayCount') < BIG_ENOUGH_FOR_LINKS) { return '<span style="color:#CCC;">Too small</span> ';

var runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doLinks(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" ext:qtip="Run coexpression analysis" alt="link analysis" /></a>';

var runurl = ""; if (record.get("currentUserHasWritePermission")) { runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doLinks(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" ext:qtip="Run coexpression analysis" alt="link analysis" /></a>'; }

this.log("is list visible?: " + isVisible);

listVisible: function() { var isVisible = !this.listWrapper.hasClass(this.css.hidden); this.log("is list visible?: " + isVisible); return isVisible; },

setTimeout(poll, 1);

setTimeout(poll, 200);

function load() { if ((!this.readyState || this.readyState == 'loaded' || this.readyState == 'complete') && !this.visited) { this.visited = true; if(--itemCount) return; /* haven't loaded all yet. */ setTimeout(poll, 1); /* straight away first time */ } }

ExpressionExperimentLoadController.run.apply(this, callParams);

ExpressionExperimentLoadController.load.apply(this, callParams);

this.setBusy(false);

loadContent: function(element) { element = document.id(element); if (this.options.content) { var c; if (this.options.content.domObj) { c = document.id(this.options.content.domObj); } else { c = document.id(this.options.content); } if (c) { if (this.options.content.addTo) { this.options.content.addTo(element); } else { element.appendChild(c); } this.contentIsLoaded = true; } else { element.innerHTML = this.options.content; this.contentIsLoaded = true; } } else if (this.options.contentURL) { this.contentIsLoaded = false; this.req = new Request({ url: this.options.contentURL, method:'get', evalScripts:true, onRequest:(function() { if(this.options.loadOnDemand) { this.setBusy(true); } }).bind(this), onSuccess:(function(html) { element.innerHTML = html; this.contentIsLoaded = true; if (Jx.isAir){ $clear(this.reqTimeout); } this.setBusy(false); this.fireEvent('contentLoaded', this); }).bind(this), onFailure: (function(){ this.contentIsLoaded = true; this.fireEvent('contentLoadFailed', this); }).bind(this), headers: {'If-Modified-Since': 'Sat, 1 Jan 2000 00:00:00 GMT'} }); this.req.send(); if (Jx.isAir) { var timeout = $defined(this.options.timeout) ? this.options.timeout : 10000; this.reqTimeout = this.checkRequest.delay(timeout, this); } } else { this.contentIsLoaded = true; } if (this.options.contentId) { element.id = this.options.contentId; } if (this.contentIsLoaded) { this.fireEvent('contentLoaded', this); } },

this.data.load(uri);

if (typeof this.data.onreadystatechange == "unknown") { var wrappedCallback = new ContextFixer(this._sarissaOnLoadCallback, this); this.data.onreadystatechange = wrappedCallback.execute; this.data.load(uri); } else { var thisObject = this; YUI().use("io-base", function(Y) { Y.on('io:complete', thisObject._YUIOnLoadCallback , thisObject, []); var request = Y.io(uri); } ); }

this.loadEntries = function(arguments) { var uri = this.dataURI; if(arguments !== undefined) { if(arguments['thatid'] != undefined && arguments['thatid'] != null && arguments['thatid'] != 0) { uri = uri+'?thatid=' + escape(arguments['thatid']); } } this.data = Sarissa.getDomDocument(); var wrappedCallback = new bx_helpers_contextfixer(this._sarissaOnLoadCallback, this); this.data.onreadystatechange = wrappedCallback.execute; dbforms2_log.log('loading ' + uri + '...') this.dataLoaded = false; this.data.load(uri); }

this.loadEntriesFromXML = function() { this.data = Sarissa.fixFirefox3Permissions(this.data);

this.loadEntriesFromXML = function(isYui) { if (!isYui) { this.data = Sarissa.fixFirefox3Permissions(this.data); }

this.loadEntriesFromXML = function() { this.data = Sarissa.fixFirefox3Permissions(this.data); var entry = this.data.documentElement.firstChild.firstChild; this.results.removeAllEntries(); while(entry) { idNS = entry.getElementsByTagName('_id'); titleNS = entry.getElementsByTagName('_title'); id = 0; if(idNS.length > 0 && idNS.item(0).childNodes[0]) { id = idNS.item(0).childNodes[0].data; } title = '#Empty Field# ('+ id +')'; if(titleNS.length > 0 && titleNS.item(0).childNodes[0]) { title = titleNS.item(0).childNodes[0].data } this.results.addEntry(id, title); entry = entry.nextSibling; } if(this.queryField.hasFocus && this.results.entries.length > 0) { this.results.focusEntryByIndex(0); this.results.show(); } else { this.results.hide(); } if(this.enablePager) { var numPagesNS = this.data.getElementsByTagName('numpages'); var numPages = 0; if(numPagesNS.length > 0) { numPages = numPagesNS.item(0).childNodes[0].data; } if(numPages > 1) { if(numPages != this.numPages) { this.resetPager(numPages); } else { this.updatePagerDisplay(); } } else { this.hidePagerDisplay(); } } }

this.loadEntriesFromXML = function() { var entry = this.data.documentElement.firstChild.firstChild;

this.loadEntriesFromXML = function(isYui) { if (!isYui) { this.data = Sarissa.fixFirefox3Permissions(this.data); } var entry = this.data.documentElement.firstChild.firstChild;

this.loadEntriesFromXML = function() { var entry = this.data.documentElement.firstChild.firstChild; this.results.removeAllEntries(); while(entry) { idNS = entry.getElementsByTagName('_id'); titleNS = entry.getElementsByTagName('_title'); title = 'Parse Error'; id = 0; if(titleNS.length > 0 && titleNS.item(0).childNodes[0]) title = titleNS.item(0).childNodes[0].data if(idNS.length > 0 && idNS.item(0).childNodes[0]) id = idNS.item(0).childNodes[0].data; this.results.addEntry(id, title); entry = entry.nextSibling; } }

title = 'Parse Error';

this.loadEntriesFromXML = function() { var entry = this.data.documentElement.firstChild.firstChild; this.results.removeAllEntries(); while(entry) { idNS = entry.getElementsByTagName('_id'); titleNS = entry.getElementsByTagName('_title'); title = 'Parse Error'; id = 0; if(titleNS.length > 0 && titleNS.item(0).childNodes[0]) title = titleNS.item(0).childNodes[0].data if(idNS.length > 0 && idNS.item(0).childNodes[0]) id = idNS.item(0).childNodes[0].data; this.results.addEntry(id, title); entry = entry.nextSibling; } }

if(titleNS.length > 0 && titleNS.item(0).childNodes[0])

if(idNS.length > 0 && idNS.item(0).childNodes[0]) { id = idNS.item(0).childNodes[0].data; } title = '#Empty Field# ('+ id +')'; if(titleNS.length > 0 && titleNS.item(0).childNodes[0]) {

this.loadEntriesFromXML = function() { var entry = this.data.documentElement.firstChild.firstChild; this.results.removeAllEntries(); while(entry) { idNS = entry.getElementsByTagName('_id'); titleNS = entry.getElementsByTagName('_title'); title = 'Parse Error'; id = 0; if(titleNS.length > 0 && titleNS.item(0).childNodes[0]) title = titleNS.item(0).childNodes[0].data if(idNS.length > 0 && idNS.item(0).childNodes[0]) id = idNS.item(0).childNodes[0].data; this.results.addEntry(id, title); entry = entry.nextSibling; } }

if(idNS.length > 0 && idNS.item(0).childNodes[0]) id = idNS.item(0).childNodes[0].data;

this.loadEntriesFromXML = function() { var entry = this.data.documentElement.firstChild.firstChild; this.results.removeAllEntries(); while(entry) { idNS = entry.getElementsByTagName('_id'); titleNS = entry.getElementsByTagName('_title'); title = 'Parse Error'; id = 0; if(titleNS.length > 0 && titleNS.item(0).childNodes[0]) title = titleNS.item(0).childNodes[0].data if(idNS.length > 0 && idNS.item(0).childNodes[0]) id = idNS.item(0).childNodes[0].data; this.results.addEntry(id, title); entry = entry.nextSibling; } }

if(this.enablePager) { var numPagesNS = this.data.getElementsByTagName('numpages'); var numPages = 0; if(numPagesNS.length > 0) { numPages = numPagesNS.item(0).childNodes[0].data; } if(numPages > 1) { if(numPages != this.numPages) { this.resetPager(numPages); } else { this.updatePagerDisplay(); } } else { this.hidePagerDisplay(); } }

this.loadEntriesFromXML = function() { var entry = this.data.documentElement.firstChild.firstChild; this.results.removeAllEntries(); while(entry) { idNS = entry.getElementsByTagName('_id'); titleNS = entry.getElementsByTagName('_title'); title = 'Parse Error'; id = 0; if(titleNS.length > 0 && titleNS.item(0).childNodes[0]) title = titleNS.item(0).childNodes[0].data if(idNS.length > 0 && idNS.item(0).childNodes[0]) id = idNS.item(0).childNodes[0].data; this.results.addEntry(id, title); entry = entry.nextSibling; } }

geneData.push([genes[i].id, genes[i].taxon.scientificName, genes[i].officialSymbol,

geneData.push([genes[i].id, genes[i].taxonScientificName, genes[i].officialSymbol,

loadGenes : function(geneIds, callback, args) { if (!geneIds || geneIds.length == 0) { return; } GenePickerController.getGenes(geneIds, function(genes) { var geneData = []; for (var i = 0; i < genes.length; ++i) { geneData.push([genes[i].id, genes[i].taxon.scientificName, genes[i].officialSymbol, genes[i].officialName]); } /* * FIXME this can result in the same gene listed twice. This is taken care of at the server * side but looks funny. */ this.getStore().loadData(geneData); if (callback) { callback(args); } }.createDelegate(this)); },

if (!geneIds || geneIds.length == 0) { return; }

loadGenes : function(geneIds, callback, args) { GenePickerController.getGenes(geneIds, function(genes) { var geneData = []; for (var i = 0; i < genes.length; ++i) { geneData.push([genes[i].id, genes[i].taxon.scientificName, genes[i].officialSymbol, genes[i].officialName]); } /* * FIXME this can result in the same gene listed twice. This is taken care of at the server * side but looks funny. */ this.getStore().loadData(geneData); if (callback) { callback(args); } }.createDelegate(this)); },

this.loadGenes(geneIds, callback, args); this.fireEvent("addgenes", geneIds); },

GenePickerController.getGenes(geneIds, function(genes) { var geneData = []; for (var i = 0; i < genes.length; ++i) { geneData .push([genes[i].id, genes[i].taxon.scientificName, genes[i].officialSymbol, genes[i].officialName]); } this.getStore().loadData(geneData); if (callback) { callback(args); } this.fireEvent("addgenes", geneIds); }.createDelegate(this)); },

loadGenes : function(geneIds, callback, args) { this.loadGenes(geneIds, callback, args); this.fireEvent("addgenes", geneIds); },

input.css('display', 'none');

$('#keyword-form').css('display', 'none');

function loadIndexTerms() { var input = $('input[name = input-keyword-prefix]'); $('#keywords-result').load("filters.xql?type=keywords&prefix=" + input.val(), function () { if ($('#keywords-result ul').hasClass('complete')) input.css('display', 'none'); });}

ExpressionExperimentController.loadStatusSummaries = function(p0, p1, p2, callback) {

ExpressionExperimentController.loadStatusSummaries = function(p0, p1, p2, p3, callback) {

ExpressionExperimentController.loadStatusSummaries = function(p0, p1, p2, callback) { dwr.engine._execute(ExpressionExperimentController._path, 'ExpressionExperimentController', 'loadStatusSummaries', p0, p1, p2, callback);}

p0, p1, p2, callback);

p0, p1, p2, p3, callback);

ExpressionExperimentController.loadStatusSummaries = function(p0, p1, p2, callback) { dwr.engine._execute(ExpressionExperimentController._path, 'ExpressionExperimentController', 'loadStatusSummaries', p0, p1, p2, callback);}

var wrappedCallback = new ContextFixer(this._sarissaOnLoadCallback, this); this.data.onreadystatechange = wrappedCallback.execute;

var thisObject = this;

this.loadXML = function(dataURI) { this.data = Sarissa.getDomDocument(); var wrappedCallback = new ContextFixer(this._sarissaOnLoadCallback, this); this.data.onreadystatechange = wrappedCallback.execute; dbforms2_log.log('loading ' + dataURI + '...') this.dataLoaded = false; this.data.load(dataURI); }

this.data.load(dataURI);

YUI().use("io-base", function(Y) { Y.on('io:complete', thisObject._YUIOnLoadCallback , thisObject, []); var request = Y.io(dataURI); } );

this.loadXML = function(dataURI) { this.data = Sarissa.getDomDocument(); var wrappedCallback = new ContextFixer(this._sarissaOnLoadCallback, this); this.data.onreadystatechange = wrappedCallback.execute; dbforms2_log.log('loading ' + dataURI + '...') this.dataLoaded = false; this.data.load(dataURI); }

return args.shift();

return console._inspect(args.shift());

console[log_methods[i]] = function logger (first_arg) { var result = []; var args = Array.prototype.slice.call(arguments, 0); if (typeof first_arg === 'string' && console._interpolate.test(first_arg)) { args.shift(); result.push(first_arg.replace(console._interpolate, function(){ return args.shift(); })); } for (var i=0; i<args.length; i++) { result.push(args[i]); } return (_log || console._output)(result.join(console._args_separator)); };

result.push(args[i]);

result.push(console._inspect(args[i]));

console[log_methods[i]] = function logger (first_arg) { var result = []; var args = Array.prototype.slice.call(arguments, 0); if (typeof first_arg === 'string' && console._interpolate.test(first_arg)) { args.shift(); result.push(first_arg.replace(console._interpolate, function(){ return args.shift(); })); } for (var i=0; i<args.length; i++) { result.push(args[i]); } return (_log || console._output)(result.join(console._args_separator)); };

_sgffx.setXulObjectVisibility('showfaxmenuitem', 1);

login: function() { this.log("*** sipgateffx: login *** BEGIN ***"); var showActiveMenu = function() { if (_sgffx.systemArea == 'team') { _sgffx.setXulObjectVisibility('sipgateffxDND', 1); } else { _sgffx.setXulObjectVisibility('sipgateffxDND', 0); } _sgffx.setXulObjectVisibility('showcreditmenuitem', 1); _sgffx.setXulObjectVisibility('showvoicemailmenuitem', 1); _sgffx.setXulObjectVisibility('showphonebookmenuitem', 1); _sgffx.setXulObjectVisibility('showhistorymenuitem', 1); _sgffx.setXulObjectVisibility('showfaxmenuitem', 1); _sgffx.setXulObjectVisibility('showitemizedmenuitem', 1); _sgffx.setXulObjectVisibility('pollbalance', 1); _sgffx.setXulObjectVisibility('showsmsformmenuitem', 1); _sgffx.setXulObjectVisibility('showphonenumberformmenuitem', 1); _sgffx.setXulObjectVisibility('item_logoff', 1); _sgffx.setXulObjectVisibility('separator1', 1); _sgffx.setXulObjectVisibility('separator2', 1); if (!_sgffx.getPref("extensions.sipgateffx.parsenumbers", "bool")) { _sgffx.setXulObjectVisibility('dialactivate', 1); } _sgffx.setXulObjectVisibility('item_logon', 0); _sgffx.setXulObjectVisibility('sipgateffx_loggedout', 0); _sgffx.setXulObjectVisibility('sipgateffx_loggedin', 1); } if (this.isLoggedIn) { this.log("*** sipgateffx: login *** ALREADY LOGGED IN ***"); showActiveMenu(); if(this.systemArea == 'team') { this.showEventSummary(); this.showDoNotDisturb(); } this.getBalance(); return; } var result = function(ourParsedResponse, aXML) { if (ourParsedResponse.StatusCode && ourParsedResponse.StatusCode == 200) { showActiveMenu(); _sgffx.isLoggedIn = true; _sgffx.log("*** NOW logged in ***"); _sgffx.curBalance = null; _sgffx.getBalance(); _sgffx.sipgateCredentials = ourParsedResponse; if(ourParsedResponse.HttpServer.match(/com$/)) { _sgffx.userCountryPrefix = '1'; } else if(ourParsedResponse.HttpServer.match(/de$/)) { _sgffx.userCountryPrefix = '49'; } else if(ourParsedResponse.HttpServer.match(/at$/)) { _sgffx.userCountryPrefix = '43'; } else if(ourParsedResponse.HttpServer.match(/co\.uk$/)) { _sgffx.userCountryPrefix = '44'; } if (_sgffx.systemArea == 'team') { _sgffx.getEventSummary(); _sgffx.getDoNotDisturb(); } _sgffx.getTosList(); _sgffx.getRecommendedIntervals(); _sgffx.getOwnUriList(); try { _sgffx.clientIdentify(); } catch(e) { _sgffx.log("*** clientIdentify FAILED"); } _sgffx.getPhonebookList(); } else { _sgffx.log("*** Login Failed with: "+ ourParsedResponse.StatusCode +" ***"); } }; try { // this._rpcCall("samurai.serverInfo", {}, result); this._rpcCall("samurai.ServerdataGet", {}, result); } catch(e) { this.log('Exception in xmlrpc-request: ' + e); this.log('Request sent: ' + request); } this.log("*** sipgateffx: login *** END ***"); },

_sgffx.setXulObjectVisibility('showsmsformmenuitem', 1);

login: function() { this.log("*** sipgateffx: login *** BEGIN ***"); var showActiveMenu = function() { if (_sgffx.systemArea == 'team') { _sgffx.setXulObjectVisibility('sipgateffxDND', 1); } else { _sgffx.setXulObjectVisibility('sipgateffxDND', 0); } _sgffx.setXulObjectVisibility('showcreditmenuitem', 1); _sgffx.setXulObjectVisibility('showvoicemailmenuitem', 1); _sgffx.setXulObjectVisibility('showphonebookmenuitem', 1); _sgffx.setXulObjectVisibility('showhistorymenuitem', 1); _sgffx.setXulObjectVisibility('showfaxmenuitem', 1); _sgffx.setXulObjectVisibility('showitemizedmenuitem', 1); _sgffx.setXulObjectVisibility('pollbalance', 1); _sgffx.setXulObjectVisibility('showsmsformmenuitem', 1); _sgffx.setXulObjectVisibility('showphonenumberformmenuitem', 1); _sgffx.setXulObjectVisibility('item_logoff', 1); _sgffx.setXulObjectVisibility('separator1', 1); _sgffx.setXulObjectVisibility('separator2', 1); if (!_sgffx.getPref("extensions.sipgateffx.parsenumbers", "bool")) { _sgffx.setXulObjectVisibility('dialactivate', 1); } _sgffx.setXulObjectVisibility('item_logon', 0); _sgffx.setXulObjectVisibility('sipgateffx_loggedout', 0); _sgffx.setXulObjectVisibility('sipgateffx_loggedin', 1); } if (this.isLoggedIn) { this.log("*** sipgateffx: login *** ALREADY LOGGED IN ***"); showActiveMenu(); if(this.systemArea == 'team') { this.showEventSummary(); this.showDoNotDisturb(); } this.getBalance(); return; } var result = function(ourParsedResponse, aXML) { if (ourParsedResponse.StatusCode && ourParsedResponse.StatusCode == 200) { showActiveMenu(); _sgffx.isLoggedIn = true; _sgffx.log("*** NOW logged in ***"); _sgffx.curBalance = null; _sgffx.getBalance(); _sgffx.sipgateCredentials = ourParsedResponse; if(ourParsedResponse.HttpServer.match(/com$/)) { _sgffx.userCountryPrefix = '1'; } else if(ourParsedResponse.HttpServer.match(/de$/)) { _sgffx.userCountryPrefix = '49'; } else if(ourParsedResponse.HttpServer.match(/at$/)) { _sgffx.userCountryPrefix = '43'; } else if(ourParsedResponse.HttpServer.match(/co\.uk$/)) { _sgffx.userCountryPrefix = '44'; } if (_sgffx.systemArea == 'team') { _sgffx.getEventSummary(); _sgffx.getDoNotDisturb(); } _sgffx.getTosList(); _sgffx.getRecommendedIntervals(); _sgffx.getOwnUriList(); try { _sgffx.clientIdentify(); } catch(e) { _sgffx.log("*** clientIdentify FAILED"); } _sgffx.getPhonebookList(); } else { _sgffx.log("*** Login Failed with: "+ ourParsedResponse.StatusCode +" ***"); } }; try { // this._rpcCall("samurai.serverInfo", {}, result); this._rpcCall("samurai.ServerdataGet", {}, result); } catch(e) { this.log('Exception in xmlrpc-request: ' + e); this.log('Request sent: ' + request); } this.log("*** sipgateffx: login *** END ***"); },

data: "user=" + user.val() + "&password=" + password.val(),

}else{ window.open('../api/#'+a.id, "_blank"); }

var makeLinksForApi = function(elements) { elements = elements || 'a'; $$(elements).each(function(a) { if (a.id) { a.addEvent('click', function() { top.main.location.href='../api/#'+a.id; }); } });}

mouseenter: this.bound.mouseenter, mouseleave: this.bound.mouseleave

mouseenter: this.onMouseEnter, mouseleave: this.onMouseLeave

makeList: function (container) { var l = new Jx.List(container, { hover: true, select: true }, this.selection); var target = this; l.addEvents({ mouseenter: this.bound.mouseenter, mouseleave: this.bound.mouseleave }); this.lists.push(l); return l; },

gRatingOptions = options || {};

gRatingOptions = options;

pwgAddEventListener(rateButton, "mouseout", resetRatingStarDisplay); pwgAddEventListener(rateButton, "mouseover", updateRatingStarDisplayEvt);

pwgAddEventListener(rateButton, "mouseout", function() {updateRatingStarDisplay( gUserRating );}); pwgAddEventListener(rateButton, "mouseover", function(e) { updateRatingStarDisplay( e.target ? e.target.initialRateValue : e.srcElement.initialRateValue); });

resetRatingStarDisplay();

updateRatingStarDisplay( gUserRating );

dojo.byId("filesDiv").style.display = ""; dojo.byId("btnUploader").style.display = ""; dojo.byId("btnUpload").style.display = "";

if (permissions.indexOf("|editAlbumDescription.others|") != -1 || (permissions.indexOf("|editAlbumDescription.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".editAlbumDescription|") != -1) {

if (userId == "SuperAdmin" || ( (albums[albumIndex].owners + "").indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".editAlbumDescription|") != -1) {

if (permissions.indexOf("|deleteAlbum.others|") != -1 || (permissions.indexOf("|deleteAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1)) {

if (userId == "SuperAdmin" || ( (albums[albumIndex].owners + "").indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".deleteAlbum|") != -1) {

alert(exception.msg); return;

adminLogout();

dojo.byId("albumDescription").value = albums[selectAlbum.selectedIndex - 1].description;

dojo.byId("albumDescription").value = albums[albumIndex].description;

if (permissions.indexOf("|addImagesToAlbum.others|") != -1 || (permissions.indexOf("|addImagesToAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".addImages|") != -1) { dojo.byId("filesDiv").style.display = ""; dojo.byId("btnUploader").style.display = ""; dojo.byId("btnUpload").style.display = ""; } else {

if (!(userId == "SuperAdmin" || (albums[albumIndex].owners + "").indexOf(userId) != -1 || permissions.indexOf("|" + albumName + ".addImages|") != -1)) {

albumIndex=selectAlbum.selectedIndex-1;

if (selectAlbum.children[0].value == "New Album") { albumIndex = selectAlbum.selectedIndex - 1; } else { albumIndex = selectAlbum.selectedIndex; }

dojo.byId("btnAlbumDesc").style.display = ""; dojo.byId("deleteAlbum").style.display = ""; gallery.getAlbums().addCallback( function(albums, exception) { if(exception) {

if (permissions.indexOf("|editAlbumDescription.others|") != -1 || (permissions.indexOf("|editAlbumDescription.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".editAlbumDescription|") != -1) { dojo.byId("btnAlbumDesc").style.display = ""; } else { dojo.byId("btnAlbumDesc").style.display = "none"; } if (permissions.indexOf("|deleteAlbum.others|") != -1 || (permissions.indexOf("|deleteAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1)) { dojo.byId("deleteAlbum").style.display = ""; } else { dojo.byId("deleteAlbum").style.display = "none"; } gallery.getAlbumsToUser(SECURITY_TOKEN).addCallback(function(albums, exception) { if (exception) {

dojo.byId("albumDescription").value=albums[selectAlbum.selectedIndex-1].description; gallery.getAlbumCover(albums[albumIndex].name).addCallback(setAlbumCoverResponse);

dojo.byId("albumDescription").value = albums[selectAlbum.selectedIndex - 1].description; gallery.getAlbumCoverToUser(albums[albumIndex].name, SECURITY_TOKEN).addCallback(setAlbumCoverResponse);

dojo.byId("albumDescription").value="";

dojo.byId("albumDescription").value = ""; if (permissions.indexOf("|addImagesToAlbum.others|") != -1 || (permissions.indexOf("|addImagesToAlbum.own|") != -1 && albums[albumIndex].owners + "".indexOf(userId) != -1) || permissions.indexOf("|" + albumName + ".addImages|") != -1) { dojo.byId("filesDiv").style.display = ""; dojo.byId("btnUploader").style.display = ""; dojo.byId("btnUpload").style.display = ""; } else { dojo.byId("filesDiv").style.display = "none"; dojo.byId("btnUploader").style.display = "none"; dojo.byId("btnUpload").style.display = "none"; }

readerChecks = []; writerChecks = [];

readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })];

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data * with groups the user is in an which 3) shows the current permissions. * There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; readerChecks = []; writerChecks = []; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext .getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk") .getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

callback : function() {

callback : function(updatedInfo) {

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; var canManage = securityInfo.currentUserCanwrite; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic, disabled : !canManage }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', disabled : !canManage, columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', disabled : !canManage, columns : 1 }] }] }], buttons : [{ text : "Save changes", disabled : !canManage, handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared);

Gemma.SecurityManager.updateSecurityLink(elid, updatedInfo.entityClass, updatedInfo.entityId, updatedInfo.publiclyReadable, shared, updatedInfo.currentUserCanwrite);

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; var canManage = securityInfo.currentUserCanwrite; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic, disabled : !canManage }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', disabled : !canManage, columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', disabled : !canManage, columns : 1 }] }] }], buttons : [{ text : "Save changes", disabled : !canManage, handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared);

Gemma.SecurityManager.updateSecurityLink(elid, updatedInfo.entityClass, updatedInfo.entityId, updatedInfo.publiclyReadable, updatedInfo.shared, updatedInfo.currentUserCanwrite);

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; var canManage = securityInfo.currentUserCanwrite; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic, disabled : !canManage }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', disabled : !canManage, columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', disabled : !canManage, columns : 1 }] }] }], buttons : [{ text : "Save changes", disabled : !canManage, handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared);

Gemma.SecurityManager.updateSecurityLink(elid, clazz, id, isPublic, isShared, canEdit);

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; var canManage = securityInfo.currentUserCanwrite; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic, disabled : !canManage }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', disabled : !canManage, columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', disabled : !canManage, columns : 1 }] }] }], buttons : [{ text : "Save changes", disabled : !canManage, handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

SecurityController.updatePermissions(securityInfo, {

SecurityController.updatePermission(securityInfo, {

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; readerChecks = []; writerChecks = []; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermissions(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

* Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div.

* Show a panel to 1) make the data set private or public 2) share the data * with groups the user is in an which 3) shows the current permissions. * There can be any number of groups. On returning, update the div.

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; readerChecks = []; writerChecks = []; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px'

title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext .getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk") .getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, shared);

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; readerChecks = []; writerChecks = []; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue;

errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, sared);

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; readerChecks = []; writerChecks = []; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] });

}); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] });

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; readerChecks = []; writerChecks = []; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

* Show a panel to 1) make the data set private or public 2) share the data * with groups the user is in an which 3) shows the current permissions. * There can be any number of groups. On returning, update the div.

* Show a panel to 1) make the data set private or public 2) share the data with groups the user is in an which 3) * shows the current permissions. There can be any number of groups. On returning, update the div.

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data * with groups the user is in an which 3) shows the current permissions. * There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext .getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk") .getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), {

title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic, disabled : !canManage }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', disabled : !canManage, columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', disabled : !canManage, columns : 1 }] }] }], buttons : [{ text : "Save changes", disabled : !canManage, handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), {

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data * with groups the user is in an which 3) shows the current permissions. * There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext .getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk") .getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

securityInfo.publiclyReadable = Ext .getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk") .getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, sared);

securityInfo.publiclyReadable = Ext.getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue;

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data * with groups the user is in an which 3) shows the current permissions. * There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext .getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk") .getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

}); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] });

if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink(elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] });

Gemma.SecurityManager.managePermissions = function(elid, clazz, id) { /* * Show a panel to 1) make the data set private or public 2) share the data * with groups the user is in an which 3) shows the current permissions. * There can be any number of groups. On returning, update the div. */ Ext.DomHelper.overwrite(elid, { tag : 'img', src : "/Gemma/images/loading.gif" }); /* * Need to get: public status from server; group sharing; available groups. */ var showSecurityForm = function(securityInfo) { var isPublic = securityInfo.publiclyReadable; var isShared = securityInfo.shared; var readers = securityInfo.groupsThatCanRead; var writers = securityInfo.groupsThatCanWrite; var availableGroups = securityInfo.availableGroups; // FIXME: // Server returns null if the currently logged user belongs to no // custom groups which is bad (for following reasons) and technikally // incorrect. // All users belong to the user group anyway but can't edit it. // Adding an array=null to a Component bombs. Adding a null check // doesn't // help because the panel has a 'field set' already declared, which at // runtime has to have at least one checkbox in it. // A way out of this is to apply the combo boxes and the field set at // the same time if they are necessary. // My kungfu no enough strong ;p readerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-read-chk", disabled : true })]; writerChecks = [new Ext.form.Checkbox({ checked : true, boxLabel : 'Users', id : 'user' + "-write-chk", disabled : true })]; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; readerChecks.push(new Ext.form.Checkbox({ checked : readers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-read-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); writerChecks.push(new Ext.form.Checkbox({ checked : writers.indexOf(groupName) >= 0, boxLabel : groupName, id : groupName + "-write-chk", disabled : groupName === Gemma.SecurityManager.adminGroupName })); } /* * show panel... */ var sp = new Ext.Window({ title : "Security for: " + Ext.util.Format.ellipsis(securityInfo.entityName, 70, true), height : 300, width : 500, minimizable : false, maximizable : false, modal : true, bodyStyle : 'padding:5px 5px 0', stateful : false, initComponent : function() { Ext.Window.superclass.initComponent.call(this); /* * Add checkboxes as needed... */ if (readerChecks.size() != 0) { Ext.apply(Ext.getCmp('reader-checks'), { items : readerChecks }); } if (writerChecks.size() != 0) { Ext.apply(Ext.getCmp('writer-checks'), { items : writerChecks }); } this.doLayout(); }, items : [{ xtype : 'form', layout : 'column', autoHeight : true, autoWidth : true, defaults : { layout : 'form', border : false, bodyStyle : 'padding:4px' }, items : [{ xtype : 'fieldset', autoHeight : true, autoWidth : true, items : [{ xtype : 'checkbox', boxLabel : "Public", id : 'public-checkbox', checked : isPublic }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : "Readers", id : 'reader-checks', columns : 1 }, { xtype : 'checkboxgroup', width : 300, itemCls : 'x-check-group-alt', fieldLabel : 'Writers', id : 'writer-checks', columns : 1 }] }] }], buttons : [{ text : "Save changes", handler : function(b, e) { var loadMask = new Ext.LoadMask(sp.getEl(), { msg : "Saving changes..." }); loadMask.show(); securityInfo.publiclyReadable = Ext .getCmp('public-checkbox').getValue(); var updatedGroupsThatCanRead = []; var updatedGroupsThatCanWrite = []; var shared = false; for (var i = 0, len = availableGroups.length; i < len; i++) { var groupName = availableGroups[i]; if (groupName === Gemma.SecurityManager.adminGroupName) { continue; } if (Ext.getCmp(groupName + "-write-chk").getValue()) { updatedGroupsThatCanWrite.push(groupName); shared = true; } if (Ext.getCmp(groupName + "-read-chk").getValue() || Ext.getCmp(groupName + "-write-chk") .getValue()) { updatedGroupsThatCanRead.push(groupName); shared = true; } } securityInfo.groupsThatCanWrite = updatedGroupsThatCanWrite; securityInfo.groupsThatCanRead = updatedGroupsThatCanRead; SecurityController.updatePermission(securityInfo, { callback : function() { sp.destroy(); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, shared); }, errorHandler : function() { sp.destroy(); alert("There was an error saving the settings."); Gemma.SecurityManager.updateSecurityLink( elid, securityInfo.publiclyReadable, sared); } }); } }, { text : 'Cancel', handler : function(b, e) { sp.destroy(); } }] }); sp.show(); // remove the load mask from the table. Gemma.SecurityManager.updateSecurityLink(elid, isPublic, isShared); }; /* * Initialization. */ SecurityController.getSecurityInfo({ classDelegatingFor : clazz, id : id }, { callback : function(securityInfo) { showSecurityForm(securityInfo); }, errorHandler : function(data) { alert("There was an error getting your group information: " + data); } });};

log.debug("adding 'spatial_ref_value.type" + "' = 'F' to ingrid document."); spatialRefValueRecord.addColumn(createColumn("spatial_ref_value", "type", "spatial_ref_value.type"), "F")

return infixRoots[chr];

return isInfix ? infixRoots[chr] : [root[1][chr]];

measure : function (text, klass, rowHeader) { if ($defined(this.options.formatter) && text !== this.options.header) { text = this.options.formatter.format(text); }

measure : function (text, klass, rowHeader, row) {

measure : function (text, klass, rowHeader) { if ($defined(this.options.formatter) && text !== this.options.header) { text = this.options.formatter.format(text); } var d = new Element('span', { 'class' : klass }); var el = new Element('span', { 'html' : text, 'class': 'jxGridCellContent' }).inject(d); d.setStyle('height', this.grid.row.getHeight()); d.setStyles({ 'visibility' : 'hidden', 'width' : 'auto' //'font-family' : 'Arial' removed because CSS may impose different font(s) }); d.inject(document.body, 'bottom'); var s = d.measure(function () { //if nogt rowHeader, get size of innner span if (!rowHeader) { return this.getFirst().getContentBoxSize(); } else { return this.getMarginBoxSize(); } }); d.destroy(); return s; },

var el = new Element('span', { 'html' : text, 'class': 'jxGridCellContent' }).inject(d); d.setStyle('height', this.grid.row.getHeight());

text.inject(d);

measure : function (text, klass, rowHeader) { if ($defined(this.options.formatter) && text !== this.options.header) { text = this.options.formatter.format(text); } var d = new Element('span', { 'class' : klass }); var el = new Element('span', { 'html' : text, 'class': 'jxGridCellContent' }).inject(d); d.setStyle('height', this.grid.row.getHeight()); d.setStyles({ 'visibility' : 'hidden', 'width' : 'auto' //'font-family' : 'Arial' removed because CSS may impose different font(s) }); d.inject(document.body, 'bottom'); var s = d.measure(function () { //if nogt rowHeader, get size of innner span if (!rowHeader) { return this.getFirst().getContentBoxSize(); } else { return this.getMarginBoxSize(); } }); d.destroy(); return s; },

return this.getFirst().getContentBoxSize();

return { content: this.getFirst().getContentBoxSize(), cell: this.getFirst().getMarginBoxSize() }

measure : function (text, klass, rowHeader, row) { var d = new Element('span', { 'class' : klass }); text.inject(d); //d.setStyle('height', this.grid.row.getHeight(row)); d.setStyles({ 'visibility' : 'hidden', 'width' : 'auto' }); d.inject(document.body, 'bottom'); var s = d.measure(function () { //if not rowHeader, get size of innner span if (!rowHeader) { return this.getFirst().getContentBoxSize(); } else { return this.getMarginBoxSize(); } }); d.destroy(); return s; },

return this.getMarginBoxSize();

return { content: this.getMarginBoxSize(), cell: this.getMarginBoxSize() }

measure : function (text, klass, rowHeader, row) { var d = new Element('span', { 'class' : klass }); text.inject(d); //d.setStyle('height', this.grid.row.getHeight(row)); d.setStyles({ 'visibility' : 'hidden', 'width' : 'auto' }); d.inject(document.body, 'bottom'); var s = d.measure(function () { //if not rowHeader, get size of innner span if (!rowHeader) { return this.getFirst().getContentBoxSize(); } else { return this.getMarginBoxSize(); } }); d.destroy(); return s; },

var runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doMissingValues(' +

var runurl = '<span style="cursor:pointer" onClick="return Ext.getCmp(\'eemanager\').doMissingValues(' +

missingValueAnalysisRenderer : function(ee) { var id = ee.id; var runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doMissingValues(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" alt="missing value computation" title="missing value computation"/></a>'; /* * Offer missing value analysis if it's possible (this might need tweaking). */ if (ee.technologyType != 'ONECOLOR' && ee.hasEitherIntensity) { if (ee.dateMissingValueAnalysis) { var type = ee.missingValueAnalysisEventType; var color = "#000"; var suggestRun = true; var qtip = 'ext:qtip="OK"'; if (type == 'FailedMissingValueAnalysisEventImpl') { color = 'red'; qtip = 'ext:qtip="Failed"'; } return '<span style="color:' + color + ';" ' + qtip + '>' + Ext.util.Format.date(ee.dateMissingValueAnalysis, 'y/M/d') + ' ' + (suggestRun ? runurl : ''); } else { return '<span style="color:#3A3;">Needed</span> ' + runurl; } } else { return '<span ext:qtip="Only relevant for two-channel microarray studies with intensity data available." style="color:#CCF;">NA</span>'; } },

')"><img src="/Gemma/images/icons/control_play_blue.png" alt="missing value computation" title="missing value computation"/></a>';

')"><img src="/Gemma/images/icons/control_play_blue.png" alt="missing value computation" title="missing value computation"/></span>';

missingValueAnalysisRenderer : function(ee) { var id = ee.id; var runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doMissingValues(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" alt="missing value computation" title="missing value computation"/></a>'; /* * Offer missing value analysis if it's possible (this might need tweaking). */ if (ee.technologyType != 'ONECOLOR' && ee.hasEitherIntensity) { if (ee.dateMissingValueAnalysis) { var type = ee.missingValueAnalysisEventType; var color = "#000"; var suggestRun = true; var qtip = 'ext:qtip="OK"'; if (type == 'FailedMissingValueAnalysisEventImpl') { color = 'red'; qtip = 'ext:qtip="Failed"'; } return '<span style="color:' + color + ';" ' + qtip + '>' + Ext.util.Format.date(ee.dateMissingValueAnalysis, 'y/M/d') + ' ' + (suggestRun ? runurl : ''); } else { return '<span style="color:#3A3;">Needed</span> ' + runurl; } } else { return '<span ext:qtip="Only relevant for two-channel microarray studies with intensity data available." style="color:#CCF;">NA</span>'; } },

var runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doMissingValues(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" ext:qtip="Run missing value analysis" alt="missing value computation" /></a>';

var runurl = ""; if (record.get("currentUserHasWritePermission")) { runurl = '<a href="#" onClick="return Ext.getCmp(\'eemanager\').doMissingValues(' + id + ')"><img src="/Gemma/images/icons/control_play_blue.png" ext:qtip="Run missing value analysis" alt="missing value computation" /></a>'; }

var newTD = this.columns.getColumnCell(this.columns.getByName(col));

var newTD = this.columns.getColumnCell(this.columns.getByName(col),column - 1);

modelChanged : function (row, col) { //grab new TD var column = this.columns.getIndexFromGrid(col); var td = document.id(this.gridObj.childNodes[0].childNodes[0].childNodes[row].childNodes[column]); var currentRow = this.model.getPosition(); this.model.moveTo(row); var newTD = this.columns.getColumnCell(this.columns.getByName(col)); //get parent list var list = td.getParent().retrieve('jxList'); list.replace(td, newTD); this.columns.updateRule(col); //newTD.replaces(td); this.model.moveTo(currentRow); },