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161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
161852e6_t__PDPK1_010__ENST00000464702___Biotype | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Population comparison - Transcript: PDPK1-010 (ENST00000464702) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Population?db=core;g=ENSG00000140992;r=16:2588022-2611502;t=ENST00000464702 | 0/1438042988061.16_20150728002308-00273-ip-10-236-191-2_414759150_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
526d633f_t__PDPK1_016__ENST00000462923___Flags | [Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-016 (ENST00000462923) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000462923 | 0/1438042988061.16_20150728002308-00250-ip-10-236-191-2_419240634_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-203 [Transcript ID] ENST00000613302 [bp] 7687 [Protein] 604aa [Translation ID] ENSP00000481799 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6256 [UniProt] Q06455 [RefSeq] NM_001198627 NM_001198630 NP_001185556 NP_001185559 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-207 [Transcript ID] ENST00000617740 [bp] 7627 [Protein] 604aa [Translation ID] ENSP00000481112 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6256 [UniProt] Q06455 [RefSeq] NM_001198626 NM_001198629 NP_001185555 NP_001185558 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-001 [Transcript ID] ENST00000523629 [bp] 7537 [Protein] 604aa [Translation ID] ENSP00000428543 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6256 [UniProt] Q06455 [RefSeq] NM_175634 NP_783552 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-205 [Transcript ID] ENST00000614812 [bp] 7483 [Protein] 604aa [Translation ID] ENSP00000481315 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6256 [UniProt] Q06455 [RefSeq] NM_001198631 NP_001185560 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-202 [Transcript ID] ENST00000436581 [bp] 7454 [Protein] 663aa [Translation ID] ENSP00000402257 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75766 [UniProt] A0A0A0MSU1 [RefSeq] NM_001198679 NP_001185608 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-204 [Transcript ID] ENST00000613886 [bp] 7401 [Protein] 577aa [Translation ID] ENSP00000478331 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47891 [UniProt] Q06455 [RefSeq] NM_001198632 NP_001185561 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-206 [Transcript ID] ENST00000615601 [bp] 7372 [Protein] 584aa [Translation ID] ENSP00000480500 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75767 [UniProt] A0A087WWT6 [RefSeq] NM_001198633 NP_001185562 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-201 [Transcript ID] ENST00000265814 [bp] 7284 [Protein] 604aa [Translation ID] ENSP00000265814 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6256 [UniProt] Q06455 [RefSeq] NM_001198628 NP_001185557 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-002 [Transcript ID] ENST00000396218 [bp] 3463 [Protein] 577aa [Translation ID] ENSP00000379520 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47891 [UniProt] Q06455 [RefSeq] NM_004349 NP_004340 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-010 [Transcript ID] ENST00000518844 [bp] 2453 [Protein] 577aa [Translation ID] ENSP00000430728 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47891 [UniProt] Q06455 [RefSeq] NM_001198625 NP_001185554 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-004 [Transcript ID] ENST00000422361 [bp] 2450 [Protein] 567aa [Translation ID] ENSP00000390137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6257 [UniProt] Q06455 W8FW32 [RefSeq] NM_175636 NP_783554 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-009 [Transcript ID] ENST00000360348 [bp] 2370 [Protein] 567aa [Translation ID] ENSP00000353504 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6257 [UniProt] Q06455 W8FW32 [RefSeq] NM_175635 NP_783553 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-011 [Transcript ID] ENST00000520724 [bp] 2103 [Protein] 615aa [Translation ID] ENSP00000428742 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56544 [UniProt] Q06455 [RefSeq] NM_001198634 NP_001185563 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-006 [Transcript ID] ENST00000521553 [bp] 1346 [Protein] 210aa [Translation ID] ENSP00000429728 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RHJ8 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-018 [Transcript ID] ENST00000519847 [bp] 1044 [Protein] 169aa [Translation ID] ENSP00000430204 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EWJ9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-042 [Transcript ID] ENST00000518992 [bp] 976 [Protein] 229aa [Translation ID] ENSP00000431094 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ETA8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-019 [Transcript ID] ENST00000517919 [bp] 782 [Protein] 135aa [Translation ID] ENSP00000429506 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EQW7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-032 [Transcript ID] ENST00000521319 [bp] 730 [Protein] 89aa [Translation ID] ENSP00000429137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RJB3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-017 [Transcript ID] ENST00000522467 [bp] 690 [Protein] 156aa [Translation ID] ENSP00000429532 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EQW3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-031 [Transcript ID] ENST00000521375 [bp] 596 [Protein] 94aa [Translation ID] ENSP00000429666 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EQI9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-012 [Transcript ID] ENST00000518832 [bp] 591 [Protein] 46aa [Translation ID] ENSP00000429864 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RH72 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-040 [Transcript ID] ENST00000521054 [bp] 585 [Protein] 171aa [Translation ID] ENSP00000427763 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RG85 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-033 [Transcript ID] ENST00000518317 [bp] 574 [Protein] 69aa [Translation ID] ENSP00000429062 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RJE7 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-041 [Transcript ID] ENST00000520556 [bp] 574 [Protein] 91aa [Translation ID] ENSP00000428100 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RK76 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-025 [Transcript ID] ENST00000520583 [bp] 573 [Protein] 120aa [Translation ID] ENSP00000430070 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A0A6YYQ5 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-039 [Transcript ID] ENST00000521733 [bp] 572 [Protein] 101aa [Translation ID] ENSP00000430637 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RJ32 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-020 [Transcript ID] ENST00000520974 [bp] 564 [Protein] 85aa [Translation ID] ENSP00000429375 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ERJ9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-029 [Transcript ID] ENST00000518823 [bp] 556 [Protein] 79aa [Translation ID] ENSP00000428475 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RI38 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-016 [Transcript ID] ENST00000523168 [bp] 553 [Protein] 120aa [Translation ID] ENSP00000429118 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7ESA9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-030 [Transcript ID] ENST00000518449 [bp] 553 [Protein] 58aa [Translation ID] ENSP00000428133 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EV92 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-028 [Transcript ID] ENST00000518954 [bp] 548 [Protein] 54aa [Translation ID] ENSP00000430080 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EX23 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-038 [Transcript ID] ENST00000517792 [bp] 548 [Protein] 120aa [Translation ID] ENSP00000429940 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RH30 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-023 [Transcript ID] ENST00000519061 [bp] 544 [Protein] 26aa [Translation ID] ENSP00000430334 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E5RFQ3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-034 [Transcript ID] ENST00000520428 [bp] 491 [Protein] 48aa [Translation ID] ENSP00000429857 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EQ59 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-043 [Transcript ID] ENST00000520978 [bp] 882 [Protein] 30aa [Translation ID] ENSP00000429085 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YBA6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-008 [Transcript ID] ENST00000521751 [bp] 870 [Protein] 127aa [Translation ID] ENSP00000430778 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YC25 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-022 [Transcript ID] ENST00000519422 [bp] 630 [Protein] 36aa [Translation ID] ENSP00000429587 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E7EQJ1 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-015 [Transcript ID] ENST00000519577 [bp] 586 [Protein] 36aa [Translation ID] ENSP00000430084 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E7EQJ1 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-014 [Transcript ID] ENST00000524215 [bp] 565 [Protein] 68aa [Translation ID] ENSP00000429034 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E7ESL1 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-027 [Transcript ID] ENST00000521897 [bp] 557 [Protein] 36aa [Translation ID] ENSP00000429653 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E7EQJ1 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-045 [Transcript ID] ENST00000518361 [bp] 431 [Protein] 31aa [Translation ID] ENSP00000430863 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YC43 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-026 [Transcript ID] ENST00000517493 [bp] 708 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-003 [Transcript ID] ENST00000522163 [bp] 631 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-036 [Transcript ID] ENST00000520172 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-037 [Transcript ID] ENST00000518256 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-021 [Transcript ID] ENST00000522860 [bp] 547 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-035 [Transcript ID] ENST00000522065 [bp] 542 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-024 [Transcript ID] ENST00000521902 [bp] 535 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-013 [Transcript ID] ENST00000522316 [bp] 504 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-005 [Transcript ID] ENST00000523290 [bp] 2061 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-007 [Transcript ID] ENST00000520047 [bp] 1872 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
8f599c61__RUNX1T1_004__ENST00000422361___Flags | [Name] RUNX1T1-044 [Transcript ID] ENST00000521078 [bp] 781 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RUNX1T1-004 (ENST00000422361) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000079102;r=8:91959793-92017637;t=ENST00000422361 | 0/1438042988061.16_20150728002308-00336-ip-10-236-191-2_423537263_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
24f03bb2_t__UCHL1_006__ENST00000514764___Biotype | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: UCHL1-006 (ENST00000514764) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000154277;r=4:41262656-41270446;t=ENST00000514764 | 0/1438042988061.16_20150728002308-00217-ip-10-236-191-2_416977007_0.json |
50701c9b___LRRC20_002__ENST00000358141___Flags | [Name] LRRC20-004 [Transcript ID] ENST00000355790 [bp] 3414 [Protein] 184aa [Translation ID] ENSP00000348043 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7302 [UniProt] A0A024QZM2 Q8TCA0 [RefSeq] NM_207119 NP_997002 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LRRC20-002 (ENST00000358141) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000172731;r=10:70298976-70382626;t=ENST00000358141 | 0/1438042988061.16_20150728002308-00195-ip-10-236-191-2_429648466_0.json |
50701c9b___LRRC20_002__ENST00000358141___Flags | [Name] LRRC20-001 [Transcript ID] ENST00000373224 [bp] 3095 [Protein] 184aa [Translation ID] ENSP00000362321 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7302 [UniProt] A0A024QZM2 Q8TCA0 [RefSeq] NM_001278211 NM_001278212 NP_001265140 NP_001265141 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LRRC20-002 (ENST00000358141) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000172731;r=10:70298976-70382626;t=ENST00000358141 | 0/1438042988061.16_20150728002308-00195-ip-10-236-191-2_429648466_0.json |
50701c9b___LRRC20_002__ENST00000358141___Flags | [Name] LRRC20-201 [Transcript ID] ENST00000395010 [bp] 2959 [Protein] 115aa [Translation ID] ENSP00000378457 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS73145 [UniProt] A0A0A0MS58 [RefSeq] NM_001278214 NP_001265143 [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LRRC20-002 (ENST00000358141) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000172731;r=10:70298976-70382626;t=ENST00000358141 | 0/1438042988061.16_20150728002308-00195-ip-10-236-191-2_429648466_0.json |
50701c9b___LRRC20_002__ENST00000358141___Flags | [Name] LRRC20-002 [Transcript ID] ENST00000358141 [bp] 2924 [Protein] 134aa [Translation ID] ENSP00000350860 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7301 [UniProt] A0A024QZL5 Q8TCA0 [RefSeq] NM_018239 NP_060709 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LRRC20-002 (ENST00000358141) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000172731;r=10:70298976-70382626;t=ENST00000358141 | 0/1438042988061.16_20150728002308-00195-ip-10-236-191-2_429648466_0.json |
50701c9b___LRRC20_002__ENST00000358141___Flags | [Name] LRRC20-005 [Transcript ID] ENST00000357631 [bp] 2906 [Protein] 128aa [Translation ID] ENSP00000350255 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7300 [UniProt] A0A024QZR0 Q8TCA0 [RefSeq] NM_018205 NP_060675 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LRRC20-002 (ENST00000358141) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000172731;r=10:70298976-70382626;t=ENST00000358141 | 0/1438042988061.16_20150728002308-00195-ip-10-236-191-2_429648466_0.json |
50701c9b___LRRC20_002__ENST00000358141___Flags | [Name] LRRC20-202 [Transcript ID] ENST00000395011 [bp] 2903 [Protein] 134aa [Translation ID] ENSP00000378458 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS7301 [UniProt] A0A024QZL5 Q8TCA0 [RefSeq] NM_001278213 NP_001265142 [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LRRC20-002 (ENST00000358141) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000172731;r=10:70298976-70382626;t=ENST00000358141 | 0/1438042988061.16_20150728002308-00195-ip-10-236-191-2_429648466_0.json |
50701c9b___LRRC20_002__ENST00000358141___Flags | [Name] LRRC20-003 [Transcript ID] ENST00000446961 [bp] 663 [Protein] 175aa [Translation ID] ENSP00000413745 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] X6RK58 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: LRRC20-002 (ENST00000358141) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000172731;r=10:70298976-70382626;t=ENST00000358141 | 0/1438042988061.16_20150728002308-00195-ip-10-236-191-2_429648466_0.json |
d37d7783_t__PTK2B_010__ENST00000522338___Flags | [Name] PTK2B-009 [Transcript ID] ENST00000397501 [bp] 4719 [Protein] 1009aa [Translation ID] ENSP00000380638 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS6057 [UniProt] Q14289 [RefSeq] NM_173174 NP_775266 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: PTK2B-010 (ENST00000522338) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000120899;r=8:27311629-27397789;t=ENST00000522338 | 0/1438042988458.74_20150728002308-00137-ip-10-236-191-2_437448193_0.json |
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