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9d5438c4_t__JADE2_002__ENST00000395003___Biotype | [Name] JADE2-009 [Transcript ID] ENST00000453515 [bp] 548 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-002 (ENST00000395003) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526108-134583230;t=ENST00000395003 | 20/1438042989234.2_20150728002309-00114-ip-10-236-191-2_432672500_0.json |
9d5438c4_t__JADE2_002__ENST00000395003___Biotype | [Name] JADE2-004 [Transcript ID] ENST00000470876 [bp] 2997 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-002 (ENST00000395003) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526108-134583230;t=ENST00000395003 | 20/1438042989234.2_20150728002309-00114-ip-10-236-191-2_432672500_0.json |
c6213b19_t__TIRAP_002__ENST00000392680___Name | [Transcript ID] ENST00000392679 [bp] 2195 [Protein] 221aa [Translation ID] ENSP00000376446 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8472 [UniProt] A0A024R3M4 P58753 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Name] | TIRAP-001 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TIRAP-002 (ENST00000392680) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000150455;r=11:126283118-126294684;t=ENST00000392680 | 20/1438042989234.2_20150728002309-00126-ip-10-236-191-2_437883805_0.json |
c6213b19_t__TIRAP_002__ENST00000392680___Name | [Transcript ID] ENST00000392680 [bp] 2068 [Protein] 221aa [Translation ID] ENSP00000376447 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS8472 [UniProt] A0A024R3M4 P58753 [RefSeq] NM_001039661 NP_001034750 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Name] | TIRAP-002 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TIRAP-002 (ENST00000392680) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000150455;r=11:126283118-126294684;t=ENST00000392680 | 20/1438042989234.2_20150728002309-00126-ip-10-236-191-2_437883805_0.json |
c6213b19_t__TIRAP_002__ENST00000392680___Name | [Transcript ID] ENST00000392678 [bp] 1264 [Protein] 235aa [Translation ID] ENSP00000376445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS41731 [UniProt] P58753 [RefSeq] NM_148910 NP_683708 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Name] | TIRAP-003 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TIRAP-002 (ENST00000392680) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000150455;r=11:126283118-126294684;t=ENST00000392680 | 20/1438042989234.2_20150728002309-00126-ip-10-236-191-2_437883805_0.json |
c6213b19_t__TIRAP_002__ENST00000392680___Name | [Transcript ID] ENST00000479770 [bp] 2245 [Protein] 221aa [Translation ID] ENSP00000436967 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] CCDS8472 [UniProt] A0A024R3M4 P58753 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Name] | TIRAP-008 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TIRAP-002 (ENST00000392680) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000150455;r=11:126283118-126294684;t=ENST00000392680 | 20/1438042989234.2_20150728002309-00126-ip-10-236-191-2_437883805_0.json |
c6213b19_t__TIRAP_002__ENST00000392680___Name | [Transcript ID] ENST00000488598 [bp] 889 [Protein] 49aa [Translation ID] ENSP00000446213 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] F5H2K1 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Name] | TIRAP-005 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TIRAP-002 (ENST00000392680) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000150455;r=11:126283118-126294684;t=ENST00000392680 | 20/1438042989234.2_20150728002309-00126-ip-10-236-191-2_437883805_0.json |
c6213b19_t__TIRAP_002__ENST00000392680___Name | [Transcript ID] ENST00000467006 [bp] 567 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Name] | TIRAP-007 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TIRAP-002 (ENST00000392680) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000150455;r=11:126283118-126294684;t=ENST00000392680 | 20/1438042989234.2_20150728002309-00126-ip-10-236-191-2_437883805_0.json |
c6213b19_t__TIRAP_002__ENST00000392680___Name | [Transcript ID] ENST00000462401 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Name] | TIRAP-006 | [
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] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TIRAP-002 (ENST00000392680) | Name | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000150455;r=11:126283118-126294684;t=ENST00000392680 | 20/1438042989234.2_20150728002309-00126-ip-10-236-191-2_437883805_0.json |
a3a38168_pt__TBX1_003__ENST00000332710___Biotype | [Name] TBX1-003 [Transcript ID] ENST00000332710 [bp] 2084 [Protein] 495aa [Translation ID] ENSP00000331791 [CCDS] CCDS13767 [UniProt] D9ZGG0 O43435 [RefSeq] NM_080647 NP_542378 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: TBX1-003 (ENST00000332710) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000184058;r=22:19756703-19767334;t=ENST00000332710 | 20/1438042989234.2_20150728002309-00157-ip-10-236-191-2_419066222_0.json |
a3a38168_pt__TBX1_003__ENST00000332710___Biotype | [Name] TBX1-001 [Transcript ID] ENST00000359500 [bp] 1538 [Protein] 372aa [Translation ID] ENSP00000352483 [CCDS] CCDS13765 [UniProt] O43435 Q152R5 [RefSeq] NM_005992 NP_005983 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: TBX1-003 (ENST00000332710) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000184058;r=22:19756703-19767334;t=ENST00000332710 | 20/1438042989234.2_20150728002309-00157-ip-10-236-191-2_419066222_0.json |
a3a38168_pt__TBX1_003__ENST00000332710___Biotype | [Name] TBX1-002 [Transcript ID] ENST00000329705 [bp] 1465 [Protein] 398aa [Translation ID] ENSP00000331176 [CCDS] CCDS13766 [UniProt] O43435 [RefSeq] NM_080646 NP_542377 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: TBX1-003 (ENST00000332710) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000184058;r=22:19756703-19767334;t=ENST00000332710 | 20/1438042989234.2_20150728002309-00157-ip-10-236-191-2_419066222_0.json |
a3a38168_pt__TBX1_003__ENST00000332710___Biotype | [Name] TBX1-201 [Transcript ID] ENST00000621939 [bp] 1248 [Protein] 372aa [Translation ID] ENSP00000477982 [CCDS] CCDS13765 [UniProt] O43435 Q152R5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: TBX1-003 (ENST00000332710) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000184058;r=22:19756703-19767334;t=ENST00000332710 | 20/1438042989234.2_20150728002309-00157-ip-10-236-191-2_419066222_0.json |
a3a38168_pt__TBX1_003__ENST00000332710___Biotype | [Name] TBX1-004 [Transcript ID] ENST00000475303 [bp] 546 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: TBX1-003 (ENST00000332710) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000184058;r=22:19756703-19767334;t=ENST00000332710 | 20/1438042989234.2_20150728002309-00157-ip-10-236-191-2_419066222_0.json |
a3a38168_pt__TBX1_003__ENST00000332710___Biotype | [Name] TBX1-005 [Transcript ID] ENST00000484336 [bp] 529 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Exons - Transcript: TBX1-003 (ENST00000332710) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000184058;r=22:19756703-19767334;t=ENST00000332710 | 20/1438042989234.2_20150728002309-00157-ip-10-236-191-2_419066222_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-001 [Transcript ID] ENST00000442011 [bp] 2804 [Protein] 683aa [Translation ID] ENSP00000416330 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47266 [UniProt] Q15582 [RefSeq] NM_000358 NP_000349 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-008 [Transcript ID] ENST00000514554 [bp] 1691 [Protein] 366aa [Translation ID] ENSP00000421440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y8L3 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-019 [Transcript ID] ENST00000604555 [bp] 1173 [Protein] 219aa [Translation ID] ENSP00000474155 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] S4R3C6 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-016 [Transcript ID] ENST00000508076 [bp] 1034 [Protein] 65aa [Translation ID] ENSP00000423935 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RBX4 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-012 [Transcript ID] ENST00000508767 [bp] 582 [Protein] 194aa [Translation ID] ENSP00000423871 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0Y9D7 [RefSeq] - [Flags] | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-017 [Transcript ID] ENST00000503087 [bp] 399 [Protein] 78aa [Translation ID] ENSP00000427137 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H0YAH8 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-003 [Transcript ID] ENST00000507018 [bp] 2469 [Protein] 128aa [Translation ID] ENSP00000421540 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0Y8M8 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-013 [Transcript ID] ENST00000509485 [bp] 731 [Protein] 59aa [Translation ID] ENSP00000426589 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YAB8 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-010 [Transcript ID] ENST00000504185 [bp] 561 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-009 [Transcript ID] ENST00000515433 [bp] 4661 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-007 [Transcript ID] ENST00000506699 [bp] 3159 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-018 [Transcript ID] ENST00000504411 [bp] 1033 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-015 [Transcript ID] ENST00000513497 [bp] 588 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-014 [Transcript ID] ENST00000514242 [bp] 574 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
b31ea33d_t__TGFBI_001__ENST00000442011___Flags | [Name] TGFBI-011 [Transcript ID] ENST00000509749 [bp] 437 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: TGFBI-001 (ENST00000442011) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000120708;r=5:136028895-136063817;t=ENST00000442011 | 20/1438042987174.71_20150728002307-00149-ip-10-236-191-2_428226111_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-005 [Transcript ID] ENST00000513407 [bp] 2276 [Protein] 164aa [Translation ID] ENSP00000475512 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] NM_001285986 NP_001272915 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-002 [Transcript ID] ENST00000471529 [bp] 1723 [Protein] 164aa [Translation ID] ENSP00000425083 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-202 [Transcript ID] ENST00000620031 [bp] 1578 [Protein] 190aa [Translation ID] ENSP00000484778 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] NM_001173531 NM_001285987 NM_203289 NP_001167002 NP_001272916 NP_976034 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-001 [Transcript ID] ENST00000259915 [bp] 1420 [Protein] 360aa [Translation ID] ENSP00000259915 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS34391 [UniProt] D2IYK3 Q01860 [RefSeq] NM_002701 NP_002692 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-007 [Transcript ID] ENST00000606567 [bp] 1236 [Protein] 190aa [Translation ID] ENSP00000475880 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS47398 [UniProt] U3KQH6 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-006 [Transcript ID] ENST00000512818 [bp] 1233 [Protein] 164aa [Translation ID] ENSP00000425479 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-004 [Transcript ID] ENST00000441888 [bp] 1055 [Protein] 164aa [Translation ID] ENSP00000389359 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75420 [UniProt] F2Z381 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-201 [Transcript ID] ENST00000619340 [bp] 1084 [Protein] 186aa [Translation ID] ENSP00000481679 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087WYB7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
8fad3841___POU5F1_006__ENST00000512818___Flags | [Name] POU5F1-003 [Transcript ID] ENST00000461401 [bp] 791 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: POU5F1-006 (ENST00000512818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000204531;r=6:31132128-31134615;t=ENST00000512818 | 20/1438042989234.2_20150728002309-00294-ip-10-236-191-2_427800173_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-001 [Transcript ID] ENST00000334220 [bp] 2838 [Protein] 453aa [Translation ID] ENSP00000335304 [CCDS] CCDS9833 [UniProt] A0A024R6C9 P36957 [RefSeq] NM_001933 NP_001924 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-006 [Transcript ID] ENST00000554806 [bp] 837 [Protein] 279aa [Translation ID] ENSP00000451957 [CCDS] - [UniProt] Q86SW4 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-201 [Transcript ID] ENST00000626051 [bp] 252 [Protein] 83aa [Translation ID] ENSP00000487251 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-002 [Transcript ID] ENST00000554612 [bp] 1479 [Protein] 37aa [Translation ID] ENSP00000451670 [CCDS] - [UniProt] G3V498 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-004 [Transcript ID] ENST00000238671 [bp] 1464 [Protein] 67aa [Translation ID] ENSP00000238671 [CCDS] - [UniProt] B7ZAZ8 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-005 [Transcript ID] ENST00000555089 [bp] 1078 [Protein] 83aa [Translation ID] ENSP00000452422 [CCDS] - [UniProt] G3V5M3 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-014 [Transcript ID] ENST00000555988 [bp] 718 [Protein] 74aa [Translation ID] ENSP00000451425 [CCDS] - [UniProt] H0YJF9 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-008 [Transcript ID] ENST00000555492 [bp] 569 [Protein] 110aa [Translation ID] ENSP00000452417 [CCDS] - [UniProt] G3V5L9 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-007 [Transcript ID] ENST00000556460 [bp] 563 [Protein] 104aa [Translation ID] ENSP00000451210 [CCDS] - [UniProt] G3V3F0 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-013 [Transcript ID] ENST00000555190 [bp] 803 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-003 [Transcript ID] ENST00000555071 [bp] 1365 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-009 [Transcript ID] ENST00000557012 [bp] 698 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-010 [Transcript ID] ENST00000556582 [bp] 568 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-012 [Transcript ID] ENST00000555459 [bp] 567 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-011 [Transcript ID] ENST00000556190 [bp] 565 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
4912fa9a_pt__DLST_002__ENST00000554612___Biotype | [Name] DLST-015 [Transcript ID] ENST00000550473 [bp] 474 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: DLST-002 (ENST00000554612) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000119689;r=14:74881915-74902551;t=ENST00000554612 | 20/1438044160065.87_20150728004240-00191-ip-10-236-191-2_422835427_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-001 [Transcript ID] ENSMUST00000044551 [bp] 6560 [Protein] 629aa [Translation ID] ENSMUSP00000048234 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS40697 [UniProt] Q9JKV2 [RefSeq] NM_019987 NP_064371 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-004 [Transcript ID] ENSMUST00000118869 [bp] 2540 [Protein] 629aa [Translation ID] ENSMUSP00000112961 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS40697 [UniProt] Q9JKV2 [RefSeq] NM_001163780 NP_001157252 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-006 [Transcript ID] ENSMUST00000117330 [bp] 2698 [Protein] 539aa [Translation ID] ENSMUSP00000113655 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q3UZZ3 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-003 [Transcript ID] ENSMUST00000009972 [bp] 873 [Protein] 100aa [Translation ID] ENSMUSP00000009972 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9D7Q7 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-008 [Transcript ID] ENSMUST00000125615 [bp] 409 [Protein] 28aa [Translation ID] ENSMUSP00000115522 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YZV1 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-007 [Transcript ID] ENSMUST00000149821 [bp] 735 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-005 [Transcript ID] ENSMUST00000142402 [bp] 3952 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
1213045d_Gene__Ick__ENSMUSG00000009828___Flags | [Name] Ick-002 [Transcript ID] ENSMUST00000142776 [bp] 3040 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Flags | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-001 [Transcript ID] ENST00000395650 [bp] 2662 [Protein] 772aa [Translation ID] ENSP00000379011 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_004377 NP_004368 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-005 [Transcript ID] ENST00000405237 [bp] 2647 [Protein] 772aa [Translation ID] ENSP00000385486 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_001145135 NM_001145137 NM_152245 NP_001138607 NP_001138609 NP_689451 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-004 [Transcript ID] ENST00000312108 [bp] 2592 [Protein] 772aa [Translation ID] ENSP00000312189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] NM_152246 NP_689452 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-201 [Transcript ID] ENST00000360719 [bp] 2319 [Protein] 772aa [Translation ID] ENSP00000353945 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS14098 [UniProt] A0A024R4W7 Q92523 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-202 [Transcript ID] ENST00000457250 [bp] 2217 [Protein] 738aa [Translation ID] ENSP00000409342 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS46734 [UniProt] Q92523 [RefSeq] NM_001145134 NP_001138606 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-008 [Transcript ID] ENST00000417176 [bp] 558 [Protein] 125aa [Translation ID] ENSP00000406316 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J7C3 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-020 [Transcript ID] ENST00000423069 [bp] 719 [Protein] 92aa [Translation ID] ENSP00000396408 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H7C0S1 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-014 [Transcript ID] ENST00000497224 [bp] 806 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-007 [Transcript ID] ENST00000460853 [bp] 757 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-013 [Transcript ID] ENST00000475238 [bp] 572 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-010 [Transcript ID] ENST00000476790 [bp] 563 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-009 [Transcript ID] ENST00000461117 [bp] 562 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
f6bd3780_t__CPT1B_014__ENST00000497224___Flags | [Name] CPT1B-011 [Transcript ID] ENST00000479886 [bp] 545 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - External data - Transcript: CPT1B-014 (ENST00000497224) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ExternalData?db=core;g=ENSG00000205560;r=22:50570348-50572297;t=ENST00000497224 | 20/1438042987174.71_20150728002307-00320-ip-10-236-191-2_419343182_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
28e4b506_t__UCHL1_011__ENST00000504818___Flags | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Comparison image - Transcript: UCHL1-011 (ENST00000504818) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Population/Image?db=core;g=ENSG00000154277;r=4:41258950-41263940;t=ENST00000504818 | 20/1438042989234.2_20150728002309-00172-ip-10-236-191-2_440567468_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-001 [Transcript ID] ENSMUST00000044551 [bp] 6560 [Translation ID] ENSMUSP00000048234 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS40697 [UniProt] Q9JKV2 [RefSeq] NM_019987 NP_064371 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Protein] | 629aa | [
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] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-004 [Transcript ID] ENSMUST00000118869 [bp] 2540 [Translation ID] ENSMUSP00000112961 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS40697 [UniProt] Q9JKV2 [RefSeq] NM_001163780 NP_001157252 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Protein] | 629aa | [
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] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-006 [Transcript ID] ENSMUST00000117330 [bp] 2698 [Translation ID] ENSMUSP00000113655 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q3UZZ3 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Protein] | 539aa | [
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] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-003 [Transcript ID] ENSMUST00000009972 [bp] 873 [Translation ID] ENSMUSP00000009972 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9D7Q7 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Protein] | 100aa | [
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] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-008 [Transcript ID] ENSMUST00000125615 [bp] 409 [Translation ID] ENSMUSP00000115522 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D3YZV1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Protein] | 28aa | [
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] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-007 [Transcript ID] ENSMUST00000149821 [bp] 735 [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Protein] | No protein | [
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[
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[
"N",
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]
] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-005 [Transcript ID] ENSMUST00000142402 [bp] 3952 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein] | No protein | [
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[
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] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
84d329de_Gene__Ick__ENSMUSG00000009828___Protein | [Name] Ick-002 [Transcript ID] ENSMUST00000142776 [bp] 3040 [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Protein] | No protein | [
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[
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] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Ick (ENSMUSG00000009828) | Protein | http://www.ensembl.org/Mus_musculus/Gene/Summary?g=ENSMUSG00000009828;r=9:78109192-78172107 | 20/1438042989234.2_20150728002309-00275-ip-10-236-191-2_438130890_0.json |
e2114f6c__RASGRP3_006__ENST00000403687___Biotype | [Name] RASGRP3-006 [Transcript ID] ENST00000403687 [bp] 4807 [Protein] 690aa [Translation ID] ENSP00000384192 [CCDS] CCDS46256 [UniProt] Q8IV61 [RefSeq] NM_001139488 NP_001132960 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RASGRP3-006 (ENST00000403687) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000152689;r=2:33476228-33564731;t=ENST00000403687 | 20/1438042989234.2_20150728002309-00196-ip-10-236-191-2_426224446_0.json |
e2114f6c__RASGRP3_006__ENST00000403687___Biotype | [Name] RASGRP3-001 [Transcript ID] ENST00000402538 [bp] 4738 [Protein] 690aa [Translation ID] ENSP00000385886 [CCDS] CCDS46256 [UniProt] Q8IV61 [RefSeq] NM_170672 NP_733772 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RASGRP3-006 (ENST00000403687) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000152689;r=2:33476228-33564731;t=ENST00000403687 | 20/1438042989234.2_20150728002309-00196-ip-10-236-191-2_426224446_0.json |
e2114f6c__RASGRP3_006__ENST00000403687___Biotype | [Name] RASGRP3-004 [Transcript ID] ENST00000407811 [bp] 4210 [Protein] 689aa [Translation ID] ENSP00000383917 [CCDS] CCDS54346 [UniProt] A0A0A6YYA9 [RefSeq] NM_015376 NP_056191 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RASGRP3-006 (ENST00000403687) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000152689;r=2:33476228-33564731;t=ENST00000403687 | 20/1438042989234.2_20150728002309-00196-ip-10-236-191-2_426224446_0.json |
e2114f6c__RASGRP3_006__ENST00000403687___Biotype | [Name] RASGRP3-007 [Transcript ID] ENST00000437184 [bp] 861 [Protein] 172aa [Translation ID] ENSP00000393866 [CCDS] - [UniProt] C9K0P4 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: RASGRP3-006 (ENST00000403687) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?db=core;g=ENSG00000152689;r=2:33476228-33564731;t=ENST00000403687 | 20/1438042989234.2_20150728002309-00196-ip-10-236-191-2_426224446_0.json |
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