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8d961dd1__Gene__UCHL1__ENSG00000154277___Biotype | [Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Splice variants - Gene: UCHL1 (ENSG00000154277) | Biotype | http://www.ensembl.org/Homo_sapiens/Gene/Splice?g=ENSG00000154277;r=4:41256413-41268455 | 3/1438042988317.67_20150728002308-00310-ip-10-236-191-2_437392824_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-001 [Transcript ID] ENST00000267868 [bp] 2449 [Protein] 339aa [Translation ID] ENSP00000267868 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10062 [UniProt] Q06609 [RefSeq] NM_002875 NP_002866 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-002 [Transcript ID] ENST00000423169 [bp] 1611 [Protein] 280aa [Translation ID] ENSP00000406602 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53932 [UniProt] Q06609 [RefSeq] NM_001164270 NP_001157742 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-009 [Transcript ID] ENST00000382643 [bp] 1588 [Protein] 340aa [Translation ID] ENSP00000372088 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_001164269 NP_001157741 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-008 [Transcript ID] ENST00000532743 [bp] 1515 [Protein] 340aa [Translation ID] ENSP00000433924 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS53931 [UniProt] Q06609 [RefSeq] NM_133487 NP_597994 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-003 [Transcript ID] ENST00000557850 [bp] 1397 [Protein] 242aa [Translation ID] ENSP00000454176 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q06609 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-006 [Transcript ID] ENST00000526763 [bp] 625 [Protein] 75aa [Translation ID] ENSP00000431897 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q9NZG9 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-007 [Transcript ID] ENST00000527860 [bp] 566 [Protein] 172aa [Translation ID] ENSP00000432759 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PNT5 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-004 [Transcript ID] ENST00000525066 [bp] 1545 [Protein] 151aa [Translation ID] ENSP00000431864 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PJ30 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-010 [Transcript ID] ENST00000531277 [bp] 658 [Protein] 100aa [Translation ID] ENSP00000436512 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] E9PI54 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
5876c215_t__RAD51_006__ENST00000526763___Flags | [Name] RAD51-013 [Transcript ID] ENST00000533741 [bp] 425 [Protein] 65aa [Translation ID] ENSP00000433053 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H0YD61 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: RAD51-006 (ENST00000526763) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000051180;r=15:40990955-41021832;t=ENST00000526763 | 3/1438042988250.59_20150728002308-00192-ip-10-236-191-2_423505207_0.json |
a2e797e9____Gene__DDT__ENSG00000099977___Flags | [Name] DDT-002 [Transcript ID] ENST00000398344 [bp] 713 [Protein] 118aa [Translation ID] ENSP00000381386 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13820 [UniProt] P30046 Q53Y51 [RefSeq] NM_001084392 NP_001077861 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
a2e797e9____Gene__DDT__ENSG00000099977___Flags | [Name] DDT-001 [Transcript ID] ENST00000350608 [bp] 671 [Protein] 118aa [Translation ID] ENSP00000215773 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13820 [UniProt] P30046 Q53Y51 [RefSeq] NM_001355 NP_001346 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
a2e797e9____Gene__DDT__ENSG00000099977___Flags | [Name] DDT-003 [Transcript ID] ENST00000404092 [bp] 805 [Protein] 132aa [Translation ID] ENSP00000385714 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KQ18 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
a2e797e9____Gene__DDT__ENSG00000099977___Flags | [Name] DDT-006 [Transcript ID] ENST00000430101 [bp] 573 [Protein] 107aa [Translation ID] ENSP00000399768 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P30046 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
a2e797e9____Gene__DDT__ENSG00000099977___Flags | [Name] DDT-005 [Transcript ID] ENST00000403754 [bp] 569 [Protein] 166aa [Translation ID] ENSP00000384866 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MC82 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
a2e797e9____Gene__DDT__ENSG00000099977___Flags | [Name] DDT-007 [Transcript ID] ENST00000428792 [bp] 333 [Protein] 50aa [Translation ID] ENSP00000409440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C342 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
a2e797e9____Gene__DDT__ENSG00000099977___Flags | [Name] DDT-004 [Transcript ID] ENST00000444947 [bp] 1048 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | Flags | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
b9c537bd____Gene__DDT__ENSG00000099977___RefSeq | [Name] DDT-002 [Transcript ID] ENST00000398344 [bp] 713 [Protein] 118aa [Translation ID] ENSP00000381386 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13820 [UniProt] P30046 Q53Y51 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [RefSeq] | NM_001084392 NP_001077861 | [
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b9c537bd____Gene__DDT__ENSG00000099977___RefSeq | [Name] DDT-001 [Transcript ID] ENST00000350608 [bp] 671 [Protein] 118aa [Translation ID] ENSP00000215773 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS13820 [UniProt] P30046 Q53Y51 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [RefSeq] | NM_001355 NP_001346 | [
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b9c537bd____Gene__DDT__ENSG00000099977___RefSeq | [Name] DDT-003 [Transcript ID] ENST00000404092 [bp] 805 [Protein] 132aa [Translation ID] ENSP00000385714 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] J3KQ18 [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
b9c537bd____Gene__DDT__ENSG00000099977___RefSeq | [Name] DDT-006 [Transcript ID] ENST00000430101 [bp] 573 [Protein] 107aa [Translation ID] ENSP00000399768 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] P30046 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
b9c537bd____Gene__DDT__ENSG00000099977___RefSeq | [Name] DDT-005 [Transcript ID] ENST00000403754 [bp] 569 [Protein] 166aa [Translation ID] ENSP00000384866 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MC82 [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
b9c537bd____Gene__DDT__ENSG00000099977___RefSeq | [Name] DDT-007 [Transcript ID] ENST00000428792 [bp] 333 [Protein] 50aa [Translation ID] ENSP00000409440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H7C342 [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
b9c537bd____Gene__DDT__ENSG00000099977___RefSeq | [Name] DDT-004 [Transcript ID] ENST00000444947 [bp] 1048 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [RefSeq] | - | [
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] | Ensembl genome browser 81: Homo sapiens - Paralogues - Gene: DDT (ENSG00000099977) | RefSeq | http://www.ensembl.org/Homo_sapiens/Gene/Compara_Paralog?g=ENSG00000099977;r=22:23971365-23980469 | 3/1438042988317.67_20150728002308-00257-ip-10-236-191-2_420032506_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-202 [Transcript ID] ENST00000420646 [bp] 3127 [Protein] 112aa [Translation ID] ENSP00000396241 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] NM_007308 NP_009292 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-003 [Transcript ID] ENST00000336904 [bp] 3041 [Protein] 140aa [Translation ID] ENSP00000338345 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146055 NP_001139527 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-001 [Transcript ID] ENST00000394986 [bp] 1420 [Protein] 140aa [Translation ID] ENSP00000378437 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_001146054 NP_001139526 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-002 [Transcript ID] ENST00000394991 [bp] 1290 [Protein] 140aa [Translation ID] ENSP00000378442 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] NM_000345 NP_000336 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-005 [Transcript ID] ENST00000345009 [bp] 1096 [Protein] 112aa [Translation ID] ENSP00000343683 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS43252 [UniProt] H6UYS5 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-008 [Transcript ID] ENST00000508895 [bp] 905 [Protein] 140aa [Translation ID] ENSP00000426955 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-006 [Transcript ID] ENST00000506244 [bp] 570 [Protein] 140aa [Translation ID] ENSP00000422238 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3634 [UniProt] P37840 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-201 [Transcript ID] ENST00000394989 [bp] 3167 [Protein] 126aa [Translation ID] ENSP00000378440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-203 [Transcript ID] ENST00000618500 [bp] 3022 [Protein] 126aa [Translation ID] ENSP00000484044 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-009 [Transcript ID] ENST00000502987 [bp] 731 [Protein] 115aa [Translation ID] ENSP00000426034 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E7EPV7 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-004 [Transcript ID] ENST00000505199 [bp] 411 [Protein] 126aa [Translation ID] ENSP00000421485 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS0 P37840 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-007 [Transcript ID] ENST00000506691 [bp] 387 [Protein] 67aa [Translation ID] ENSP00000423445 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RA31 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
487b5709_pt__SNCA_009__ENST00000502987___Flags | [Name] SNCA-010 [Transcript ID] ENST00000611107 [bp] 297 [Protein] 98aa [Translation ID] ENSP00000479604 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H6UYS7 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: SNCA-009 (ENST00000502987) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000145335;r=4:89724105-89837199;t=ENST00000502987 | 3/1438042988250.59_20150728002308-00080-ip-10-236-191-2_427636949_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-001 [Transcript ID] ENSMUST00000109901 [bp] 4380 [Protein] 739aa [Translation ID] ENSMUSP00000105527 [CCDS] CCDS49163 [UniProt] Q61183 [RefSeq] NM_011112 NP_035242 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1PRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-010 [Transcript ID] ENSMUST00000170002 [bp] 2605 [Protein] 718aa [Translation ID] ENSMUSP00000126275 [CCDS] - [UniProt] E9PZR3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-009 [Transcript ID] ENSMUST00000163473 [bp] 2544 [Protein] 693aa [Translation ID] ENSMUSP00000131668 [CCDS] - [UniProt] E9PWC8 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-002 [Transcript ID] ENSMUST00000168186 [bp] 2436 [Protein] 732aa [Translation ID] ENSMUSP00000128402 [CCDS] - [UniProt] E9QAN2 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-011 [Transcript ID] ENSMUST00000166471 [bp] 1508 [Protein] 419aa [Translation ID] ENSMUSP00000132353 [CCDS] - [UniProt] F6VTN8 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-007 [Transcript ID] ENSMUST00000166735 [bp] 1033 [Protein] 293aa [Translation ID] ENSMUSP00000128908 [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-019 [Transcript ID] ENSMUST00000164798 [bp] 966 [Protein] 322aa [Translation ID] ENSMUSP00000125898 [CCDS] - [UniProt] F7CXD5 [RefSeq] - [Flags] 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-015 [Transcript ID] ENSMUST00000170540 [bp] 741 [Protein] 23aa [Translation ID] ENSMUSP00000130714 [CCDS] - [UniProt] E9QAN5 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-020 [Transcript ID] ENSMUST00000172089 [bp] 686 [Protein] 120aa [Translation ID] ENSMUSP00000131729 [CCDS] - [UniProt] F7AB38 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-003 [Transcript ID] ENSMUST00000021535 [bp] 3022 [Protein] 739aa [Translation ID] ENSMUSP00000021535 [CCDS] CCDS49163 [UniProt] Q61183 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-004 [Transcript ID] ENSMUST00000169938 [bp] 4356 [Protein] 168aa [Translation ID] ENSMUSP00000130687 [CCDS] - [UniProt] E9QAY4 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-008 [Transcript ID] ENSMUST00000166329 [bp] 2223 [Protein] 111aa [Translation ID] ENSMUSP00000131725 [CCDS] - [UniProt] E9PVN7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-017 [Transcript ID] ENSMUST00000169524 [bp] 701 [Protein] 95aa [Translation ID] ENSMUSP00000130798 [CCDS] - [UniProt] F7DC29 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-014 [Transcript ID] ENSMUST00000164326 [bp] 529 [Protein] 66aa [Translation ID] ENSMUSP00000125818 [CCDS] - [UniProt] E9Q5Z1 [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-013 [Transcript ID] ENSMUST00000165584 [bp] 809 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-012 [Transcript ID] ENSMUST00000172040 [bp] 726 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-005 [Transcript ID] ENSMUST00000166498 [bp] 2076 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-006 [Transcript ID] ENSMUST00000163805 [bp] 1170 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-018 [Transcript ID] ENSMUST00000170189 [bp] 581 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
88c42464_e__Papola__ENSMUSG00000021111___Biotype | [Name] Papola-016 [Transcript ID] ENSMUST00000170831 [bp] 295 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Mus musculus - Summary - Gene: Papola (ENSMUSG00000021111) | Biotype | http://www.ensembl.org/Mus_musculus/Gene/Summary?db=core;g=ENSMUSG00000021111;r=12:105784694-105838944 | 3/1438042988317.67_20150728002308-00051-ip-10-236-191-2_419658208_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-002 [Transcript ID] ENST00000395003 [bp] 6465 [Protein] 790aa [Translation ID] ENSP00000378451 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS4176 [UniProt] Q9NQC1 [RefSeq] NM_015288 NP_056103 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL2 - APPRIS candidate principal isoform (CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-001 [Transcript ID] ENST00000361895 [bp] 3212 [Protein] 791aa [Translation ID] ENSP00000354425 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS75305 [UniProt] A0A0C4DFT8 [RefSeq] NM_001289984 NP_001276913 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-003 [Transcript ID] ENST00000282605 [bp] 2748 [Protein] 834aa [Translation ID] ENSP00000282605 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS78061 [UniProt] G3XAA4 [RefSeq] NM_001289985 NM_001308143 NP_001276914 NP_001295072 [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-007 [Transcript ID] ENST00000402835 [bp] 2797 [Protein] 509aa [Translation ID] ENSP00000384671 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] B5MBX1 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-201 [Transcript ID] ENST00000612830 [bp] 1251 [Protein] 246aa [Translation ID] ENSP00000483173 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] A0A087X085 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-008 [Transcript ID] ENST00000431355 [bp] 887 [Protein] 255aa [Translation ID] ENSP00000406189 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] C9J929 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-011 [Transcript ID] ENST00000512386 [bp] 567 [Protein] 149aa [Translation ID] ENSP00000422991 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R9B8 [RefSeq] - [Flags] | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-006 [Transcript ID] ENST00000430087 [bp] 1256 [Protein] 47aa [Translation ID] ENSP00000396026 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H7C0P2 [RefSeq] - [Flags] | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-010 [Transcript ID] ENST00000515554 [bp] 549 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-009 [Transcript ID] ENST00000453515 [bp] 548 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
fd26e640_t__JADE2_008__ENST00000431355___Flags | [Name] JADE2-004 [Transcript ID] ENST00000470876 [bp] 2997 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 | [] | Ensembl genome browser 81: Homo sapiens - Protein summary - Transcript: JADE2-008 (ENST00000431355) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/ProteinSummary?g=ENSG00000043143;r=5:134526637-134562280;t=ENST00000431355 | 3/1438042988250.59_20150728002308-00113-ip-10-236-191-2_442106333_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-007 [Transcript ID] ENST00000373146 [bp] 2460 [Protein] 333aa [Translation ID] ENSP00000362239 [CCDS] CCDS6882 [UniProt] Q969X2 [RefSeq] NM_013443 NP_038471 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-006 [Transcript ID] ENST00000373142 [bp] 2448 [Protein] 374aa [Translation ID] ENSP00000362235 [CCDS] CCDS69669 [UniProt] Q969X2 [RefSeq] NM_001286999 NP_001273928 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-010 [Transcript ID] ENST00000373141 [bp] 2424 [Protein] 299aa [Translation ID] ENSP00000362234 [CCDS] CCDS69668 [UniProt] A0A024R8C6 Q969X2 [RefSeq] NM_001287001 NP_001273930 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-008 [Transcript ID] ENST00000373144 [bp] 2406 [Protein] 299aa [Translation ID] ENSP00000362237 [CCDS] CCDS69668 [UniProt] A0A024R8C6 Q969X2 [RefSeq] NM_001287000 NP_001273929 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-203 [Transcript ID] ENST00000622357 [bp] 2396 [Protein] 299aa [Translation ID] ENSP00000477575 [CCDS] CCDS69668 [UniProt] A0A024R8C6 Q969X2 [RefSeq] NM_001287002 NP_001273931 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT1 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-201 [Transcript ID] ENST00000291839 [bp] 2280 [Protein] 333aa [Translation ID] ENSP00000291839 [CCDS] CCDS6882 [UniProt] Q969X2 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P3 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-202 [Transcript ID] ENST00000542456 [bp] 2018 [Protein] 86aa [Translation ID] ENSP00000438109 [CCDS] CCDS75908 [UniProt] F6SGE3 [RefSeq] NM_001287003 NP_001273932 [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-011 [Transcript ID] ENST00000447681 [bp] 802 [Protein] 200aa [Translation ID] ENSP00000405326 [CCDS] - [UniProt] X6RH99 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Genes and/or transcript that contains an open reading frame (ORF).Protein coding | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-009 [Transcript ID] ENST00000485320 [bp] 2357 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] NR_104629 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-012 [Transcript ID] ENST00000480417 [bp] 777 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-013 [Transcript ID] ENST00000494541 [bp] 712 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-014 [Transcript ID] ENST00000463086 [bp] 505 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-005 [Transcript ID] ENST00000494611 [bp] 474 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-001 [Transcript ID] ENST00000481355 [bp] 466 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-004 [Transcript ID] ENST00000478319 [bp] 452 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype] | Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
c68c1a01_6GALNAC6_005__ENST00000494611___Biotype | [Name] ST6GALNAC6-015 [Transcript ID] ENST00000483353 [bp] 2310 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA [Biotype] | Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: ST6GALNAC6-005 (ENST00000494611) | Biotype | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000160408;r=9:127896246-127905408;t=ENST00000494611 | 3/1438042982745.46_20150728002302-00203-ip-10-236-191-2_426473534_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-203 [Transcript ID] ENST00000344290 [bp] 6816 [Protein] 776aa [Translation ID] ENSP00000340820 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] NM_001123066 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-201 [Transcript ID] ENST00000262410 [bp] 6762 [Protein] 758aa [Translation ID] ENSP00000262410 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] NM_016835 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-204 [Transcript ID] ENST00000351559 [bp] 5811 [Protein] 441aa [Translation ID] ENSP00000303214 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] NM_005910 NP_005901 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-202 [Transcript ID] ENST00000340799 [bp] 5724 [Protein] 412aa [Translation ID] ENSP00000340438 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] NM_001123067 NP_001116539 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-205 [Transcript ID] ENST00000535772 [bp] 5718 [Protein] 410aa [Translation ID] ENSP00000443028 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] NM_001203251 NM_001203252 NP_001190180 NP_001190181 [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-002 [Transcript ID] ENST00000446361 [bp] 5345 [Protein] 383aa [Translation ID] ENSP00000408975 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11500 [UniProt] A0A024R9Y0 P10636 [RefSeq] NM_016834 NP_058518 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-004 [Transcript ID] ENST00000415613 [bp] 2331 [Protein] 776aa [Translation ID] ENSP00000410838 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45715 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL4 - APPRIS candidate principal isoform (longest CCDS).APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-008 [Transcript ID] ENST00000571987 [bp] 2277 [Protein] 758aa [Translation ID] ENSP00000458742 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11501 [UniProt] A0A024R9Y1 P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-007 [Transcript ID] ENST00000574436 [bp] 1326 [Protein] 441aa [Translation ID] ENSP00000460965 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11499 [UniProt] A0A024RA17 P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-003 [Transcript ID] ENST00000420682 [bp] 1239 [Protein] 412aa [Translation ID] ENSP00000413056 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS45716 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS ALT2 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-006 [Transcript ID] ENST00000431008 [bp] 1233 [Protein] 410aa [Translation ID] ENSP00000389250 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS56033 [UniProt] P10636 [RefSeq] - [Flags] | Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-001 [Transcript ID] ENST00000334239 [bp] 1107 [Protein] 352aa [Translation ID] ENSP00000334886 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS11502 [UniProt] P10636 [RefSeq] NM_016841 NP_058525 [Flags] | Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-009 [Transcript ID] ENST00000576518 [bp] 6778 [Protein] 341aa [Translation ID] ENSP00000458621 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] I3L170 [RefSeq] - [Flags] | Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-011 [Transcript ID] ENST00000571311 [bp] 544 [Protein] 59aa [Translation ID] ENSP00000460048 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] I3L2Z2 [RefSeq] - [Flags] | Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
18f65fd3_pt__MAPT_001__ENST00000334239___Flags | [Name] MAPT-013 [Transcript ID] ENST00000570299 [bp] 889 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags] | Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 | [] | Ensembl genome browser 81: Homo sapiens - Summary - Transcript: MAPT-001 (ENST00000334239) | Flags | http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000186868;r=17:45894382-46028334;t=ENST00000334239 | 3/1438042988250.59_20150728002308-00228-ip-10-236-191-2_425063251_0.json |
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