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Demo of outcome switching detection using transformers models. Outcome switching is defined as the modification, inversion, suppression of a primary outcome in a Randomized Controlled Trial(RCT) between the published article and the registry entry. | |
What this demo is doing : | |
1. Retrieve abstract (PMID given) or fulltext (PMCID given) of an article | |
2. Parse the Methods section of the article and get section text | |
3. Use finetuned NER model for detecting primary outcomes in that text | |
4. Use a RegEx to find the NCT ID (ClinicalTrials.gov) in the full text | |
5. Use CTGOV API to extract registry primary outcome (considered as ground truth) | |
6. Use Semantic Textual Similarity Model to compare CTGOV outcome to article detected outcomes |