emmas96 commited on
Commit
2d2e3fe
·
1 Parent(s): 51218b3

temporarily simplify protein encoding

Browse files
Files changed (1) hide show
  1. app.py +8 -7
app.py CHANGED
@@ -168,15 +168,16 @@ def retrieval():
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  st.markdown('\n\n\n\n Plot of protein to be added soon. \n\n\n\n')
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  with col2:
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- st.write('Encoding with SecVec')
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  st.image('protein_encoder_done.png')
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- from bio_embeddings.embed import SeqVecEmbedder
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- encoder = SeqVecEmbedder()
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- embeddings = encoder.embed_batch([sequence])
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- for emb in embeddings:
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- embedding = encoder.reduce_per_protein(emb)
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- break
 
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  st.markdown('### Retrieval')
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  st.write('TODO HyperPCM predicts the QSAR model for the given protein target.')
 
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  st.markdown('\n\n\n\n Plot of protein to be added soon. \n\n\n\n')
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  with col2:
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+ st.write('Currently encoding the protein with SecVec...')
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  st.image('protein_encoder_done.png')
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+ #from bio_embeddings.embed import SeqVecEmbedder
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+ #encoder = SeqVecEmbedder()
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+ #embeddings = encoder.embed_batch([sequence])
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+ #for emb in embeddings:
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+ # embedding = encoder.reduce_per_protein(emb)
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+ # break
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+ st.write('Encoding complete.')
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  st.markdown('### Retrieval')
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  st.write('TODO HyperPCM predicts the QSAR model for the given protein target.')