temporarily simplify protein encoding
Browse files
app.py
CHANGED
@@ -168,15 +168,16 @@ def retrieval():
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st.markdown('\n\n\n\n Plot of protein to be added soon. \n\n\n\n')
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with col2:
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st.write('
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st.image('protein_encoder_done.png')
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from bio_embeddings.embed import SeqVecEmbedder
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encoder = SeqVecEmbedder()
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embeddings = encoder.embed_batch([sequence])
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for emb in embeddings:
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st.markdown('### Retrieval')
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st.write('TODO HyperPCM predicts the QSAR model for the given protein target.')
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st.markdown('\n\n\n\n Plot of protein to be added soon. \n\n\n\n')
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with col2:
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st.write('Currently encoding the protein with SecVec...')
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st.image('protein_encoder_done.png')
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#from bio_embeddings.embed import SeqVecEmbedder
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#encoder = SeqVecEmbedder()
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#embeddings = encoder.embed_batch([sequence])
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#for emb in embeddings:
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# embedding = encoder.reduce_per_protein(emb)
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# break
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st.write('Encoding complete.')
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st.markdown('### Retrieval')
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st.write('TODO HyperPCM predicts the QSAR model for the given protein target.')
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