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PROTAC-Degradation-Predictor / protac_degradation_predictor

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History: 12 commits

ribesstefano's picture

Added softmax in model + Fixed and updated some hparams + Fixed bug in tanimoto distance (it was treated as similarity)

bda3015 about 1 year ago

data
started testing package code about 1 year ago
models
Working loading and predicting with pretrained model + Added scaling in "pure" pytorch during forwarding about 1 year ago
__init__.py
529 Bytes

Working loading and predicting with pretrained model + Added scaling in "pure" pytorch during forwarding about 1 year ago
config.py

1.15 kB

Added FP search + Added train metrics to logs about 1 year ago
data_utils.py
3.39 kB

started testing package code about 1 year ago
optuna_utils.py
24.1 kB

Added softmax in model + Fixed and updated some hparams + Fixed bug in tanimoto distance (it was treated as similarity) about 1 year ago
protac_dataset.py
9.25 kB

Refactored experiments + fixed bug in dataset when applying scaling to val and test sets about 1 year ago
protac_degradation_predictor.py
4.08 kB

Working loading and predicting with pretrained model + Added scaling in "pure" pytorch during forwarding about 1 year ago
pytorch_models.py
23.7 kB

Added softmax in model + Fixed and updated some hparams + Fixed bug in tanimoto distance (it was treated as similarity) about 1 year ago
sklearn_models.py

7.81 kB

started testing package code about 1 year ago