canergen commited on
Commit
0659060
·
verified ·
1 Parent(s): 1a2fc62

Upload folder using huggingface_hub

Browse files
.gitattributes CHANGED
@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
 
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
36
+ OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
37
+ OnClass.meta filter=lfs diff=lfs merge=lfs -text
OnClass.data-00000-of-00001 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c3082454ba7e28bc2f29fdc0d1216de4ba45380e5d228732370750c48b6eb59a
3
+ size 27239224
OnClass.index ADDED
Binary file (222 Bytes). View file
 
OnClass.meta ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7d7df0777cc51d7a434424b2f11af27681d7963ece895d2657f2f246c09ec860
3
+ size 195076
OnClass.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d9f083ff07801a29dd8311444956762b5e58da8c3635d284a0ac524daa407063
3
+ size 144122108
accuracies.json ADDED
@@ -0,0 +1,4 @@
 
 
 
 
 
1
+ {
2
+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| microglial cell | 1336 | 0.99 | 0.99 | 0.96 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| B cell | 555 | 0.65 | 0.71 | 0.72 | 0.68 | 0.00 | 0.71 | 0.65 | 0.70 | 0.77 |\n| endothelial cell | 482 | 0.79 | 0.84 | 0.80 | 0.70 | 0.00 | 0.70 | 0.86 | 0.82 | 0.89 |\n| mesenchymal stem cell of adipose tissue | 455 | 0.84 | 0.89 | 0.75 | 0.65 | 0.00 | 0.65 | 0.93 | 0.86 | 0.90 |\n| basal cell of epidermis | 406 | 0.87 | 0.91 | 0.84 | 0.86 | 0.00 | 0.81 | 0.93 | 0.89 | 0.93 |\n| fibroblast of cardiac tissue | 342 | 0.93 | 0.93 | 0.73 | 0.63 | 0.00 | 0.19 | 0.97 | 0.93 | 0.95 |\n| hematopoietic stem cell | 312 | 0.95 | 0.95 | 0.94 | 0.95 | 0.00 | 0.94 | 0.98 | 0.96 | 0.97 |\n| granulocyte | 294 | 0.89 | 0.91 | 0.89 | 0.86 | 0.00 | 0.71 | 0.92 | 0.91 | 0.93 |\n| naive B cell | 334 | 0.46 | 0.09 | 0.54 | 0.41 | 0.00 | 0.19 | 0.58 | 0.65 | 0.41 |\n| skeletal muscle satellite cell | 278 | 0.98 | 0.98 | 0.95 | 0.95 | 0.00 | 0.95 | 0.97 | 0.96 | 0.98 |\n| endothelial cell of coronary artery | 263 | 0.78 | 0.81 | 0.63 | 0.43 | 0.00 | 0.64 | 0.89 | 0.83 | 0.90 |\n| keratinocyte stem cell | 255 | 0.93 | 0.93 | 0.95 | 0.93 | 0.00 | 0.93 | 0.97 | 0.94 | 0.96 |\n| myeloid cell | 240 | 0.51 | 0.67 | 0.51 | 0.46 | 0.00 | 0.53 | 0.68 | 0.67 | 0.69 |\n| enterocyte of epithelium of large intestine | 269 | 0.91 | 0.93 | 0.88 | 0.94 | 0.00 | 0.94 | 0.94 | 0.91 | 0.94 |\n| macrophage | 251 | 0.35 | 0.52 | 0.44 | 0.46 | 0.00 | 0.34 | 0.51 | 0.55 | 0.59 |\n| basal cell | 206 | 1.00 | 0.99 | 0.97 | 0.94 | 0.00 | 0.95 | 0.99 | 0.98 | 0.99 |\n| bronchial smooth muscle cell | 208 | 0.95 | 0.95 | 0.85 | 0.71 | 0.00 | 0.89 | 0.95 | 0.96 | 0.96 |\n| oligodendrocyte | 221 | 0.99 | 1.00 | 0.99 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| DN4 thymocyte | 166 | 0.61 | 0.62 | 0.42 | 0.53 | 0.00 | 0.52 | 0.77 | 0.75 | 0.75 |\n| epithelial cell of large intestine | 172 | 0.89 | 0.88 | 0.72 | 0.83 | 0.00 | 0.86 | 0.93 | 0.91 | 0.91 |\n| thymocyte | 150 | 0.89 | 0.91 | 0.74 | 0.83 | 0.00 | 0.84 | 0.91 | 0.92 | 0.92 |\n| large intestine goblet cell | 168 | 0.80 | 0.85 | 0.81 | 0.82 | 0.00 | 0.81 | 0.91 | 0.89 | 0.90 |\n| intestinal crypt stem cell | 155 | 0.86 | 0.90 | 0.81 | 0.87 | 0.00 | 0.89 | 0.94 | 0.89 | 0.93 |\n| mesenchymal stem cell | 176 | 0.70 | 0.80 | 0.59 | 0.47 | 0.00 | 0.53 | 0.89 | 0.81 | 0.86 |\n| bladder urothelial cell | 124 | 0.97 | 0.96 | 0.92 | 0.90 | 0.00 | 0.93 | 0.99 | 0.99 | 0.98 |\n| type B pancreatic cell | 129 | 0.99 | 0.98 | 0.93 | 0.97 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| fibroblast | 136 | 0.51 | 0.65 | 0.31 | 0.37 | 0.00 | 0.34 | 0.87 | 0.71 | 0.74 |\n| T cell | 101 | 0.33 | 0.39 | 0.38 | 0.30 | 0.00 | 0.37 | 0.44 | 0.47 | 0.45 |\n| monocyte | 115 | 0.55 | 0.72 | 0.52 | 0.57 | 0.00 | 0.46 | 0.77 | 0.75 | 0.80 |\n| keratinocyte | 130 | 0.81 | 0.90 | 0.71 | 0.74 | 0.00 | 0.78 | 0.94 | 0.87 | 0.93 |\n| CD4-positive, alpha-beta T cell | 142 | 0.57 | 0.64 | 0.49 | 0.45 | 0.00 | 0.55 | 0.58 | 0.63 | 0.70 |\n| hepatocyte | 102 | 0.96 | 0.96 | 0.97 | 0.94 | 0.00 | 0.95 | 0.97 | 0.95 | 0.97 |\n| CD8-positive, alpha-beta T cell | 111 | 0.52 | 0.47 | 0.48 | 0.46 | 0.00 | 0.54 | 0.51 | 0.58 | 0.59 |\n| promonocyte | 98 | 0.48 | 0.69 | 0.61 | 0.46 | 0.00 | 0.53 | 0.72 | 0.73 | 0.76 |\n| bladder cell | 88 | 0.99 | 0.99 | 0.90 | 0.64 | 0.00 | 0.81 | 1.00 | 0.96 | 0.99 |\n| natural killer cell | 96 | 0.78 | 0.76 | 0.70 | 0.60 | 0.00 | 0.71 | 0.71 | 0.72 | 0.79 |\n| precursor B cell | 86 | 0.84 | 0.87 | 0.68 | 0.73 | 0.00 | 0.84 | 0.89 | 0.88 | 0.90 |\n| luminal epithelial cell of mammary gland | 80 | 0.92 | 0.95 | 0.94 | 0.91 | 0.00 | 0.90 | 0.97 | 0.96 | 0.96 |\n| endothelial cell of hepatic sinusoid | 59 | 0.93 | 0.97 | 0.90 | 0.81 | 0.00 | 0.88 | 0.93 | 0.93 | 0.94 |\n| astrocyte | 53 | 0.85 | 0.94 | 0.88 | 0.92 | 0.00 | 0.95 | 0.94 | 0.93 | 0.95 |\n| immature B cell | 48 | 0.63 | 0.52 | 0.39 | 0.27 | 0.00 | 0.46 | 0.60 | 0.56 | 0.71 |\n| pancreatic acinar cell | 58 | 0.97 | 0.97 | 0.97 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| secretory cell | 61 | 0.68 | 0.56 | 0.42 | 0.45 | 0.00 | 0.67 | 0.86 | 0.84 | 0.80 |\n| pancreatic A cell | 67 | 0.88 | 0.92 | 0.86 | 0.90 | 0.00 | 0.94 | 0.96 | 0.95 | 0.94 |\n| epidermal cell | 59 | 0.82 | 0.79 | 0.39 | 0.69 | 0.00 | 0.69 | 0.84 | 0.76 | 0.83 |\n| neuron | 37 | 0.65 | 0.68 | 0.60 | 0.68 | 0.00 | 0.85 | 0.92 | 0.82 | 0.86 |\n| brain pericyte | 40 | 0.79 | 0.83 | 0.73 | 0.74 | 0.00 | 0.91 | 0.95 | 0.88 | 0.86 |\n| granulocytopoietic cell | 46 | 0.75 | 0.86 | 0.76 | 0.85 | 0.00 | 0.78 | 0.86 | 0.80 | 0.83 |\n| fibroblast of lung | 48 | 0.95 | 0.95 | 0.93 | 0.92 | 0.00 | 0.93 | 0.97 | 0.95 | 0.97 |\n| kidney collecting duct epithelial cell | 33 | 0.61 | 0.86 | 0.85 | 0.79 | 0.00 | 0.98 | 0.99 | 0.99 | 0.98 |\n| aortic endothelial cell | 9 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.14 | 0.11 | 0.08 | 0.09 |\n| epithelial cell | 34 | 0.31 | 0.11 | 0.43 | 0.41 | 0.00 | 0.37 | 0.54 | 0.48 | 0.59 |\n| late pro-B cell | 38 | 0.88 | 0.94 | 0.93 | 0.84 | 0.00 | 0.91 | 0.96 | 0.92 | 0.97 |\n| basal epithelial cell of tracheobronchial tree | 34 | 0.62 | 0.51 | 0.42 | 0.61 | 0.00 | 0.67 | 0.89 | 0.80 | 0.88 |\n| regular atrial cardiac myocyte | 39 | 0.45 | 0.64 | 0.73 | 0.61 | 0.00 | 0.58 | 0.76 | 0.77 | 0.80 |\n| epithelial cell of proximal tubule | 33 | 0.35 | 0.78 | 0.69 | 0.71 | 0.00 | 0.91 | 0.96 | 0.97 | 0.93 |\n| endocardial cell | 38 | 0.96 | 0.95 | 0.93 | 0.80 | 0.00 | 0.82 | 0.97 | 0.96 | 0.99 |\n| myeloid dendritic cell | 39 | 0.48 | 0.57 | 0.12 | 0.33 | 0.00 | 0.44 | 0.75 | 0.70 | 0.68 |\n| stromal cell | 25 | 0.26 | 0.35 | 0.20 | 0.29 | 0.00 | 0.36 | 0.58 | 0.58 | 0.62 |\n| mature alpha-beta T cell | 32 | 0.22 | 0.15 | 0.09 | 0.31 | 0.00 | 0.36 | 0.36 | 0.49 | 0.26 |\n| cardiac valve cell | 33 | 0.78 | 0.85 | 0.78 | 0.81 | 0.00 | 0.88 | 0.90 | 0.86 | 0.85 |\n| pancreatic ductal cell | 34 | 1.00 | 0.99 | 0.99 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| oligodendrocyte precursor cell | 36 | 0.97 | 0.99 | 0.93 | 0.93 | 0.00 | 1.00 | 0.99 | 0.94 | 0.99 |\n| adventitial cell | 41 | 0.48 | 0.40 | 0.31 | 0.10 | 0.00 | 0.27 | 0.79 | 0.55 | 0.69 |\n| chondrocyte | 23 | 0.73 | 0.79 | 0.81 | 0.67 | 0.00 | 0.81 | 0.89 | 0.85 | 0.83 |\n| Kupffer cell | 38 | 0.99 | 0.93 | 0.84 | 0.85 | 0.00 | 0.80 | 0.97 | 0.92 | 0.97 |\n| granulocyte monocyte progenitor cell | 21 | 0.65 | 0.78 | 0.81 | 0.68 | 0.00 | 0.79 | 0.84 | 0.86 | 0.88 |\n| interneuron | 25 | 0.49 | 0.67 | 0.47 | 0.60 | 0.00 | 0.89 | 0.96 | 0.89 | 0.88 |\n| myeloid leukocyte | 17 | 0.00 | 0.21 | 0.38 | 0.29 | 0.00 | 0.06 | 0.20 | 0.50 | 0.20 |\n| classical monocyte | 13 | 0.00 | 0.27 | 0.28 | 0.22 | 0.00 | 0.36 | 0.62 | 0.57 | 0.53 |\n| mature NK T cell | 19 | 0.40 | 0.17 | 0.26 | 0.16 | 0.00 | 0.46 | 0.33 | 0.68 | 0.58 |\n| pancreatic D cell | 17 | 0.94 | 0.90 | 0.82 | 0.94 | 0.00 | 0.92 | 1.00 | 1.00 | 1.00 |\n| brush cell of epithelium proper of large intestine | 15 | 0.76 | 0.73 | 0.33 | 0.74 | 0.00 | 0.64 | 0.94 | 0.88 | 0.90 |\n| epithelial cell of thymus | 19 | 0.10 | 0.00 | 0.18 | 0.55 | 0.00 | 0.46 | 0.56 | 0.49 | 0.53 |\n| enteroendocrine cell | 11 | 0.95 | 0.62 | 0.53 | 0.86 | 0.00 | 0.81 | 0.90 | 1.00 | 0.95 |\n| leukocyte | 16 | 0.00 | 0.61 | 0.40 | 0.00 | 0.00 | 0.06 | 0.75 | 0.81 | 0.67 |\n| neutrophil | 12 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 0.42 | 0.40 | 0.11 |\n| vein endothelial cell | 13 | 0.43 | 0.27 | 0.20 | 0.12 | 0.00 | 0.78 | 1.00 | 0.74 | 0.70 |\n| kidney collecting duct principal cell | 11 | 0.00 | 0.86 | 0.73 | 0.78 | 0.00 | 0.87 | 0.91 | 0.83 | 0.95 |\n| neuroepithelial stem cell | 22 | 0.32 | 0.09 | 0.43 | 0.50 | 0.00 | 0.62 | 0.83 | 0.74 | 0.84 |\n| non-classical monocyte | 16 | 0.00 | 0.55 | 0.33 | 0.22 | 0.00 | 0.46 | 0.67 | 0.72 | 0.59 |\n| regular ventricular cardiac myocyte | 16 | 0.43 | 0.00 | 0.81 | 0.80 | 0.00 | 0.82 | 1.00 | 0.94 | 0.86 |\n| kidney loop of Henle ascending limb epithelial cell | 12 | 0.63 | 0.85 | 0.77 | 0.80 | 0.00 | 0.96 | 0.96 | 0.87 | 0.92 |\n| smooth muscle cell of trachea | 11 | 0.00 | 0.00 | 0.21 | 0.27 | 0.00 | 0.29 | 0.52 | 0.46 | 0.40 |\n| professional antigen presenting cell | 2 | 0.00 | 0.00 | 0.14 | 0.50 | 0.00 | 0.33 | 0.36 | 0.21 | 0.50 |\n| smooth muscle cell of the pulmonary artery | 6 | 0.00 | 0.44 | 0.00 | 0.33 | 0.00 | 0.27 | 0.83 | 0.77 | 0.91 |\n| proerythroblast | 10 | 0.00 | 0.40 | 0.24 | 0.31 | 0.00 | 0.17 | 0.30 | 0.40 | 0.12 |\n| smooth muscle cell | 14 | 0.00 | 0.58 | 0.33 | 0.24 | 0.00 | 0.67 | 0.93 | 0.84 | 0.77 |\n| medium spiny neuron | 11 | 1.00 | 0.95 | 0.40 | 0.86 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of lymphatic vessel | 7 | 0.47 | 0.46 | 0.83 | 0.22 | 0.00 | 0.52 | 0.88 | 0.64 | 0.82 |\n| neural stem cell | 14 | 0.00 | 0.80 | 0.72 | 0.64 | 0.00 | 0.79 | 0.89 | 0.75 | 0.85 |\n| mesangial cell | 8 | 0.00 | 0.40 | 0.00 | 0.00 | 0.00 | 0.21 | 0.43 | 0.56 | 0.55 |\n| megakaryocyte-erythroid progenitor cell | 10 | 0.32 | 0.40 | 0.40 | 0.57 | 0.00 | 0.55 | 0.57 | 0.67 | 0.64 |\n| mucus secreting cell | 9 | 0.64 | 0.55 | 0.71 | 0.62 | 0.00 | 0.89 | 0.95 | 1.00 | 0.90 |\n| early pro-B cell | 7 | 0.00 | 0.83 | 0.83 | 0.86 | 0.00 | 0.86 | 0.86 | 0.80 | 0.92 |\n| pancreatic PP cell | 8 | 0.00 | 0.40 | 0.22 | 0.20 | 0.00 | 0.71 | 0.88 | 0.80 | 0.40 |\n| basophil | 11 | 0.27 | 0.43 | 0.84 | 0.64 | 0.00 | 0.69 | 0.95 | 0.82 | 0.87 |\n| ciliated columnar cell of tracheobronchial tree | 9 | 0.62 | 0.84 | 0.88 | 0.82 | 0.00 | 0.82 | 0.90 | 0.82 | 0.95 |\n| dendritic cell | 8 | 0.44 | 0.29 | 0.00 | 0.42 | 0.00 | 0.31 | 0.59 | 0.47 | 0.42 |\n| ependymal cell | 6 | 0.00 | 0.60 | 0.67 | 0.92 | 0.00 | 0.80 | 1.00 | 0.92 | 1.00 |\n| Bergmann glial cell | 2 | 0.00 | 0.67 | 0.67 | 0.50 | 0.00 | 0.50 | 0.50 | 0.50 | 0.67 |\n| pulmonary interstitial fibroblast | 4 | 0.38 | 0.50 | 0.50 | 0.75 | 0.00 | 0.67 | 0.86 | 0.67 | 0.67 |\n| pancreatic stellate cell | 3 | 0.67 | 0.67 | 0.67 | 0.00 | 0.00 | 0.18 | 0.67 | 0.57 | 0.67 |\n| regulatory T cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pericyte | 4 | 0.00 | 0.67 | 0.75 | 0.67 | 0.00 | 0.67 | 0.75 | 0.89 | 0.75 |\n| fibrocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| respiratory basal cell | 6 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.56 | 0.80 | 0.91 | 0.67 |\n| plasma cell | 2 | 0.17 | 0.00 | 0.00 | 0.00 | 0.00 | 0.22 | 0.00 | 0.36 | 0.36 |\n| club cell | 2 | 0.00 | 0.00 | 0.10 | 0.20 | 0.00 | 0.11 | 0.67 | 0.29 | 0.40 |\n| kidney interstitial fibroblast | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 |\n| lymphoid lineage restricted progenitor cell | 2 | 0.00 | 0.00 | 0.67 | 1.00 | 0.00 | 0.80 | 0.67 | 0.67 | 0.67 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| lymphocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| lung macrophage | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| lung neuroendocrine cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
3
+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| microglial cell | 11932 | 0.99 | 0.99 | 0.95 | 0.99 | 0.00 | 0.97 | 0.99 | 0.99 | 1.00 |\n| B cell | 5056 | 0.64 | 0.71 | 0.82 | 0.78 | 0.00 | 0.93 | 0.69 | 0.73 | 0.86 |\n| endothelial cell | 4433 | 0.79 | 0.79 | 0.85 | 0.78 | 0.00 | 0.81 | 0.87 | 0.84 | 0.92 |\n| mesenchymal stem cell of adipose tissue | 4275 | 0.85 | 0.88 | 0.81 | 0.76 | 0.00 | 0.97 | 0.94 | 0.88 | 0.96 |\n| basal cell of epidermis | 3808 | 0.84 | 0.89 | 0.92 | 0.90 | 0.00 | 0.81 | 0.93 | 0.91 | 0.93 |\n| fibroblast of cardiac tissue | 3575 | 0.92 | 0.91 | 0.81 | 0.78 | 0.00 | 0.96 | 0.95 | 0.92 | 0.96 |\n| hematopoietic stem cell | 2994 | 0.93 | 0.94 | 0.96 | 0.96 | 0.00 | 0.96 | 0.97 | 0.96 | 0.97 |\n| granulocyte | 2672 | 0.89 | 0.91 | 0.90 | 0.92 | 0.00 | 0.94 | 0.95 | 0.94 | 0.96 |\n| naive B cell | 2625 | 0.38 | 0.02 | 0.75 | 0.61 | 0.00 | 0.92 | 0.61 | 0.66 | 0.73 |\n| skeletal muscle satellite cell | 2441 | 0.97 | 0.97 | 0.91 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| endothelial cell of coronary artery | 2431 | 0.76 | 0.75 | 0.81 | 0.63 | 0.00 | 0.87 | 0.91 | 0.87 | 0.95 |\n| keratinocyte stem cell | 2384 | 0.94 | 0.94 | 0.96 | 0.95 | 0.00 | 0.95 | 0.97 | 0.95 | 0.97 |\n| myeloid cell | 2307 | 0.52 | 0.66 | 0.70 | 0.66 | 0.00 | 0.82 | 0.77 | 0.78 | 0.85 |\n| enterocyte of epithelium of large intestine | 2273 | 0.91 | 0.94 | 0.95 | 0.95 | 0.00 | 0.94 | 0.95 | 0.94 | 0.96 |\n| macrophage | 2192 | 0.33 | 0.48 | 0.72 | 0.63 | 0.00 | 0.67 | 0.60 | 0.66 | 0.72 |\n| basal cell | 1933 | 0.99 | 0.98 | 0.98 | 0.96 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |\n| bronchial smooth muscle cell | 1907 | 0.94 | 0.93 | 0.81 | 0.77 | 0.00 | 0.94 | 0.98 | 0.96 | 0.97 |\n| oligodendrocyte | 1873 | 0.98 | 0.99 | 0.98 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| DN4 thymocyte | 1590 | 0.59 | 0.56 | 0.66 | 0.69 | 0.00 | 0.92 | 0.86 | 0.86 | 0.88 |\n| epithelial cell of large intestine | 1532 | 0.88 | 0.88 | 0.87 | 0.88 | 0.00 | 0.89 | 0.95 | 0.93 | 0.94 |\n| thymocyte | 1475 | 0.88 | 0.90 | 0.80 | 0.92 | 0.00 | 0.93 | 0.95 | 0.96 | 0.95 |\n| large intestine goblet cell | 1419 | 0.78 | 0.83 | 0.89 | 0.88 | 0.00 | 0.92 | 0.96 | 0.93 | 0.95 |\n| intestinal crypt stem cell | 1424 | 0.87 | 0.90 | 0.91 | 0.91 | 0.00 | 0.90 | 0.95 | 0.91 | 0.95 |\n| mesenchymal stem cell | 1250 | 0.64 | 0.68 | 0.65 | 0.60 | 0.00 | 0.92 | 0.89 | 0.84 | 0.91 |\n| bladder urothelial cell | 1278 | 0.98 | 0.94 | 0.95 | 0.94 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| type B pancreatic cell | 1213 | 0.96 | 0.96 | 0.90 | 0.96 | 0.00 | 0.97 | 0.98 | 0.98 | 0.97 |\n| fibroblast | 1193 | 0.48 | 0.54 | 0.60 | 0.54 | 0.00 | 0.96 | 0.92 | 0.83 | 0.92 |\n| T cell | 1218 | 0.49 | 0.52 | 0.60 | 0.59 | 0.00 | 0.71 | 0.74 | 0.77 | 0.74 |\n| monocyte | 1165 | 0.60 | 0.72 | 0.83 | 0.73 | 0.00 | 0.82 | 0.86 | 0.84 | 0.91 |\n| keratinocyte | 1084 | 0.76 | 0.88 | 0.91 | 0.83 | 0.00 | 0.78 | 0.93 | 0.90 | 0.92 |\n| CD4-positive, alpha-beta T cell | 1028 | 0.54 | 0.54 | 0.66 | 0.60 | 0.00 | 0.72 | 0.73 | 0.79 | 0.78 |\n| hepatocyte | 1047 | 0.96 | 0.95 | 0.95 | 0.96 | 0.00 | 0.96 | 0.98 | 0.98 | 0.98 |\n| CD8-positive, alpha-beta T cell | 959 | 0.49 | 0.51 | 0.62 | 0.59 | 0.00 | 0.74 | 0.75 | 0.78 | 0.76 |\n| promonocyte | 917 | 0.45 | 0.60 | 0.93 | 0.61 | 0.00 | 0.95 | 0.87 | 0.87 | 0.95 |\n| bladder cell | 914 | 0.98 | 0.98 | 0.91 | 0.80 | 0.00 | 0.99 | 1.00 | 0.96 | 1.00 |\n| natural killer cell | 779 | 0.75 | 0.75 | 0.75 | 0.73 | 0.00 | 0.80 | 0.88 | 0.90 | 0.88 |\n| precursor B cell | 770 | 0.83 | 0.85 | 0.87 | 0.80 | 0.00 | 0.90 | 0.96 | 0.95 | 0.94 |\n| luminal epithelial cell of mammary gland | 688 | 0.95 | 0.96 | 0.99 | 0.97 | 0.00 | 0.95 | 1.00 | 0.98 | 0.99 |\n| endothelial cell of hepatic sinusoid | 558 | 0.94 | 0.85 | 0.90 | 0.84 | 0.00 | 0.92 | 0.99 | 0.98 | 0.99 |\n| astrocyte | 539 | 0.86 | 0.93 | 0.95 | 0.95 | 0.00 | 0.97 | 0.99 | 0.99 | 0.98 |\n| immature B cell | 541 | 0.64 | 0.55 | 0.63 | 0.54 | 0.00 | 0.80 | 0.79 | 0.79 | 0.87 |\n| pancreatic acinar cell | 518 | 0.92 | 0.94 | 0.94 | 0.94 | 0.00 | 0.97 | 0.99 | 0.99 | 0.98 |\n| secretory cell | 502 | 0.64 | 0.28 | 0.78 | 0.71 | 0.00 | 0.86 | 0.95 | 0.91 | 0.93 |\n| pancreatic A cell | 454 | 0.83 | 0.82 | 0.87 | 0.87 | 0.00 | 0.92 | 0.97 | 0.96 | 0.91 |\n| epidermal cell | 433 | 0.72 | 0.67 | 0.78 | 0.77 | 0.00 | 0.65 | 0.84 | 0.82 | 0.83 |\n| neuron | 447 | 0.69 | 0.66 | 0.72 | 0.80 | 0.00 | 0.91 | 0.98 | 0.97 | 0.95 |\n| brain pericyte | 444 | 0.79 | 0.80 | 0.82 | 0.83 | 0.00 | 0.94 | 1.00 | 0.98 | 0.92 |\n| granulocytopoietic cell | 437 | 0.78 | 0.87 | 0.90 | 0.89 | 0.00 | 0.81 | 0.93 | 0.92 | 0.94 |\n| fibroblast of lung | 431 | 0.96 | 0.96 | 0.88 | 0.88 | 0.00 | 0.98 | 0.99 | 0.97 | 0.99 |\n| kidney collecting duct epithelial cell | 407 | 0.65 | 0.81 | 0.88 | 0.81 | 0.00 | 0.96 | 1.00 | 0.99 | 0.97 |\n| aortic endothelial cell | 420 | 0.21 | 0.02 | 0.39 | 0.40 | 0.00 | 0.67 | 0.55 | 0.49 | 0.82 |\n| epithelial cell | 392 | 0.30 | 0.04 | 0.72 | 0.64 | 0.00 | 0.76 | 0.72 | 0.74 | 0.82 |\n| late pro-B cell | 373 | 0.84 | 0.91 | 0.93 | 0.86 | 0.00 | 0.94 | 0.99 | 0.98 | 0.97 |\n| basal epithelial cell of tracheobronchial tree | 367 | 0.69 | 0.53 | 0.80 | 0.69 | 0.00 | 0.88 | 0.95 | 0.88 | 0.94 |\n| regular atrial cardiac myocyte | 360 | 0.54 | 0.60 | 0.81 | 0.72 | 0.00 | 0.74 | 0.81 | 0.88 | 0.91 |\n| epithelial cell of proximal tubule | 349 | 0.39 | 0.77 | 0.87 | 0.77 | 0.00 | 0.95 | 0.99 | 0.99 | 0.96 |\n| endocardial cell | 337 | 0.96 | 0.93 | 0.96 | 0.83 | 0.00 | 0.93 | 0.96 | 0.95 | 0.97 |\n| myeloid dendritic cell | 334 | 0.45 | 0.47 | 0.86 | 0.58 | 0.00 | 0.91 | 0.89 | 0.82 | 0.88 |\n| stromal cell | 315 | 0.24 | 0.19 | 0.62 | 0.47 | 0.00 | 0.94 | 0.76 | 0.68 | 0.92 |\n| mature alpha-beta T cell | 298 | 0.32 | 0.19 | 0.60 | 0.48 | 0.00 | 0.80 | 0.74 | 0.86 | 0.83 |\n| cardiac valve cell | 282 | 0.86 | 0.91 | 0.81 | 0.88 | 0.00 | 0.95 | 0.96 | 0.97 | 0.94 |\n| pancreatic ductal cell | 279 | 0.98 | 0.97 | 0.99 | 0.94 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| oligodendrocyte precursor cell | 276 | 0.96 | 0.98 | 0.95 | 0.98 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| adventitial cell | 247 | 0.48 | 0.52 | 0.72 | 0.30 | 0.00 | 0.89 | 0.89 | 0.73 | 0.95 |\n| chondrocyte | 252 | 0.87 | 0.80 | 0.91 | 0.82 | 0.00 | 0.89 | 0.98 | 0.95 | 0.95 |\n| Kupffer cell | 224 | 0.94 | 0.64 | 0.88 | 0.82 | 0.00 | 0.75 | 0.98 | 0.97 | 0.99 |\n| granulocyte monocyte progenitor cell | 229 | 0.62 | 0.78 | 0.87 | 0.86 | 0.00 | 0.83 | 0.90 | 0.89 | 0.91 |\n| interneuron | 215 | 0.55 | 0.68 | 0.82 | 0.76 | 0.00 | 0.89 | 0.98 | 0.94 | 0.90 |\n| myeloid leukocyte | 192 | 0.00 | 0.11 | 0.82 | 0.40 | 0.00 | 0.87 | 0.91 | 0.89 | 0.97 |\n| classical monocyte | 189 | 0.00 | 0.34 | 0.64 | 0.53 | 0.00 | 0.90 | 0.87 | 0.86 | 0.92 |\n| mature NK T cell | 180 | 0.35 | 0.14 | 0.66 | 0.38 | 0.00 | 0.72 | 0.91 | 0.92 | 0.91 |\n| pancreatic D cell | 174 | 0.90 | 0.89 | 0.87 | 0.89 | 0.00 | 0.91 | 0.99 | 0.98 | 0.96 |\n| brush cell of epithelium proper of large intestine | 160 | 0.76 | 0.76 | 0.77 | 0.81 | 0.00 | 0.85 | 0.98 | 0.97 | 0.94 |\n| epithelial cell of thymus | 146 | 0.22 | 0.01 | 0.58 | 0.50 | 0.00 | 0.76 | 0.89 | 0.78 | 0.93 |\n| enteroendocrine cell | 150 | 0.88 | 0.53 | 0.76 | 0.89 | 0.00 | 0.91 | 0.99 | 0.98 | 0.98 |\n| leukocyte | 142 | 0.00 | 0.31 | 0.71 | 0.44 | 0.00 | 0.74 | 0.81 | 0.85 | 0.95 |\n| neutrophil | 141 | 0.00 | 0.10 | 0.28 | 0.21 | 0.00 | 0.80 | 0.75 | 0.69 | 0.80 |\n| vein endothelial cell | 139 | 0.53 | 0.54 | 0.71 | 0.30 | 0.00 | 0.88 | 0.95 | 0.89 | 0.85 |\n| kidney collecting duct principal cell | 140 | 0.00 | 0.78 | 0.88 | 0.75 | 0.00 | 0.96 | 0.99 | 0.96 | 0.98 |\n| neuroepithelial stem cell | 129 | 0.21 | 0.03 | 0.84 | 0.73 | 0.00 | 0.73 | 0.91 | 0.83 | 0.93 |\n| non-classical monocyte | 133 | 0.00 | 0.36 | 0.59 | 0.38 | 0.00 | 0.83 | 0.81 | 0.77 | 0.89 |\n| regular ventricular cardiac myocyte | 129 | 0.53 | 0.00 | 0.87 | 0.84 | 0.00 | 0.91 | 0.98 | 0.98 | 0.98 |\n| kidney loop of Henle ascending limb epithelial cell | 132 | 0.65 | 0.85 | 0.92 | 0.69 | 0.00 | 0.96 | 1.00 | 0.99 | 0.99 |\n| smooth muscle cell of trachea | 114 | 0.00 | 0.11 | 0.58 | 0.52 | 0.00 | 0.85 | 0.85 | 0.77 | 0.84 |\n| professional antigen presenting cell | 114 | 0.14 | 0.15 | 0.53 | 0.61 | 0.00 | 0.84 | 0.87 | 0.80 | 0.93 |\n| smooth muscle cell of the pulmonary artery | 105 | 0.00 | 0.55 | 0.77 | 0.40 | 0.00 | 0.53 | 0.89 | 0.83 | 0.91 |\n| proerythroblast | 97 | 0.00 | 0.10 | 0.62 | 0.28 | 0.00 | 0.76 | 0.92 | 0.87 | 0.89 |\n| smooth muscle cell | 89 | 0.00 | 0.34 | 0.67 | 0.42 | 0.00 | 0.95 | 0.97 | 0.92 | 0.91 |\n| medium spiny neuron | 92 | 0.98 | 0.54 | 0.83 | 0.88 | 0.00 | 0.94 | 1.00 | 0.99 | 0.99 |\n| endothelial cell of lymphatic vessel | 92 | 0.47 | 0.41 | 0.93 | 0.55 | 0.00 | 0.63 | 0.81 | 0.72 | 0.85 |\n| neural stem cell | 83 | 0.00 | 0.75 | 0.83 | 0.94 | 0.00 | 0.93 | 1.00 | 0.95 | 0.99 |\n| mesangial cell | 84 | 0.00 | 0.16 | 0.61 | 0.39 | 0.00 | 0.79 | 0.86 | 0.68 | 0.91 |\n| megakaryocyte-erythroid progenitor cell | 70 | 0.30 | 0.27 | 0.80 | 0.82 | 0.00 | 0.81 | 0.89 | 0.96 | 0.94 |\n| mucus secreting cell | 64 | 0.57 | 0.64 | 0.86 | 0.82 | 0.00 | 0.96 | 0.95 | 0.98 | 0.98 |\n| early pro-B cell | 65 | 0.00 | 0.69 | 0.70 | 0.79 | 0.00 | 0.92 | 0.99 | 0.99 | 0.94 |\n| pancreatic PP cell | 63 | 0.00 | 0.17 | 0.67 | 0.35 | 0.00 | 0.90 | 0.99 | 0.98 | 0.82 |\n| basophil | 60 | 0.28 | 0.61 | 0.76 | 0.81 | 0.00 | 0.75 | 0.97 | 0.82 | 0.85 |\n| ciliated columnar cell of tracheobronchial tree | 61 | 0.80 | 0.87 | 0.96 | 0.86 | 0.00 | 0.88 | 0.99 | 0.93 | 0.98 |\n| dendritic cell | 54 | 0.45 | 0.26 | 0.77 | 0.64 | 0.00 | 0.91 | 0.91 | 0.84 | 0.81 |\n| ependymal cell | 49 | 0.00 | 0.70 | 0.97 | 0.85 | 0.00 | 0.95 | 1.00 | 1.00 | 0.98 |\n| Bergmann glial cell | 52 | 0.00 | 0.45 | 0.86 | 0.76 | 0.00 | 0.77 | 1.00 | 1.00 | 0.96 |\n| pulmonary interstitial fibroblast | 45 | 0.41 | 0.59 | 0.76 | 0.74 | 0.00 | 0.92 | 1.00 | 0.94 | 0.95 |\n| pancreatic stellate cell | 45 | 0.88 | 0.47 | 0.93 | 0.48 | 0.00 | 0.86 | 0.90 | 0.89 | 0.95 |\n| regulatory T cell | 43 | 0.00 | 0.00 | 0.12 | 0.04 | 0.00 | 0.68 | 0.90 | 0.91 | 0.44 |\n| pericyte | 34 | 0.00 | 0.77 | 0.72 | 0.82 | 0.00 | 0.84 | 0.96 | 0.94 | 0.93 |\n| fibrocyte | 35 | 0.00 | 0.00 | 0.40 | 0.41 | 0.00 | 0.60 | 0.76 | 0.82 | 0.87 |\n| respiratory basal cell | 28 | 0.00 | 0.00 | 0.89 | 0.74 | 0.00 | 0.68 | 0.95 | 0.98 | 0.96 |\n| plasma cell | 23 | 0.16 | 0.00 | 0.75 | 0.16 | 0.00 | 0.25 | 0.45 | 0.36 | 0.43 |\n| club cell | 20 | 0.00 | 0.00 | 0.22 | 0.17 | 0.00 | 0.26 | 0.91 | 0.44 | 0.57 |\n| kidney interstitial fibroblast | 15 | 0.00 | 0.00 | 0.64 | 0.85 | 0.00 | 0.83 | 0.86 | 0.97 | 1.00 |\n| lymphoid lineage restricted progenitor cell | 11 | 0.00 | 0.00 | 0.90 | 0.91 | 0.00 | 0.69 | 0.63 | 1.00 | 0.95 |\n| intermediate monocyte | 12 | 0.00 | 0.00 | 0.25 | 0.13 | 0.00 | 0.91 | 1.00 | 1.00 | 0.50 |\n| lymphocyte | 9 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 | 0.76 | 1.00 | 1.00 | 0.20 |\n| lung macrophage | 8 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 | 0.44 | 0.89 | 0.80 | 0.93 |\n| plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.63 | 0.43 | 0.86 | 0.67 |\n| lung neuroendocrine cell | 4 | 0.00 | 0.00 | 0.86 | 0.86 | 0.00 | 1.00 | 0.89 | 1.00 | 0.86 |"
4
+ }
celltypist.pkl ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4d0faf09cc82a33223aae04af35a5d61cedc418c6e69ec437ae14a53bb8779e5
3
+ size 2040482
checkpoint ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ model_checkpoint_path: "OnClass"
2
+ all_model_checkpoint_paths: "OnClass"
harmony_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6dbb855e4ac8b3a6fc30b4db484e28b043805027568d1b719a0ac19d54a50c56
3
+ size 76593127
obo_dag.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:88b6c19fc939f3c304978a10ef8b7cc6ba69d2d4a0a0613df8312b4ee3a26313
3
+ size 321386
popv_output/predictions.csv ADDED
The diff for this file is too large to render. See raw diff
 
preprocessing.json ADDED
The diff for this file is too large to render. See raw diff
 
pynndescent_index.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:34878dec23ffd910b18f8678aeab39b28d2ce2326d27aca2acece453fa9e2fda
3
+ size 81024884
scanvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1dbe9febd9d1acb44e07bb6d46676ceda59485a2c8211840283883b0dcfa63b1
3
+ size 14583596
scvi/model.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2963a50d8b5ce4e3d2b2c8bc9248ce612941bfb38f17cee92bccf7e45d12e0f9
3
+ size 13683005
scvi_knn_classifier.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:98d19a958aca77fe29b67ad44223695075c9aa25b50e73f8fd614385ef6fcbdf
3
+ size 43611783
svm_classifier_cuml.joblib ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a5d6ffeec435dfe201e62642f9aeac6d39bd8841f2b20b576225219afe025888
3
+ size 1978459
xgboost_classifier.model ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:75fb17d18ab1e0ff1638535976aeec0aaa5448cb02257d38dc5cb66c7b7dbc77
3
+ size 30082827