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ddddwee1/SULT | 0ff31b602d20dd8bc5cf4a6f4f5bc193d636e784 | import tensorflow as tf
import model3 as M
import datareader
import numpy as np
import tqdm
import network
def grad_loss(x, model):
x2d, x3d = x
with tf.GradientTape() as tape:
pred, K, reprojected, crit_fake = model(x2d)
crit_real = model.crit(x3d)
crit_dis = tf.reduce_mean(tf.square(crit_real - tf.ones_like(crit_real))) + tf.reduce_mean(tf.square(crit_fake - tf.zeros_like(crit_fake)))
crit_gen = tf.reduce_mean(tf.square(crit_fake - tf.ones_like(crit_fake)))
rep_loss = tf.reduce_mean(tf.square(pred - x2d))
KK = tf.matmul(K, K, transpose_b=True)
K_trace = tf.expand_dims(tf.expand_dims(tf.trace(KK), -1), -1)
K_loss = tf.reduce_mean(tf.abs(KK / K_trace - tf.eye(2)))
loss_total_gen = crit_gen + rep_loss + K_loss
gen_var = model.get_gen_vars()
dis_var = model.dis.trainable_variables
grads = tape.gradient([loss_total_gen, crit_dis], [gen_var, dis_var])
return grads, [crit_dis, crit_gen, rep_loss, K_loss]
reader = datareader.DataReader(16)
model = network.RepNet()
optim = tf.optimizers.Adam(0.0001, 0.5)
saver = M.Saver(model)
saver.restore('./model/')
MAXITER = 10000
bar = tqdm(range(MAXITER+1))
for i in bar:
batch = reader.get_next()
grads, lss = grad_loss(batch, model)
gen_var = model.get_gen_vars()
dis_var = model.dis.trainable_variables
optim.apply_gradients(zip(grads[0], gen_var))
optim.apply_gradients(zip(grads[1], dis_var))
bar.set_description('CDis:%.4f CGen:%.4f Rep:%.4f K:%.4f'%(lss[0], lss[1], lss[2], lss[3]))
if i%1000==0 and i>0:
saver.save('./model/repnet.ckpt')
| [
"tensorflow.matmul",
"tensorflow.ones_like",
"tensorflow.eye",
"tensorflow.zeros_like",
"tensorflow.GradientTape",
"tensorflow.square",
"tensorflow.optimizers.Adam",
"tensorflow.trace"
] | example/RepNet/train.py | [(30, 'datareader.DataReader', 'datareader.DataReader', (['(16)'], {}), False, 'import datareader\n'), (31, 'network.RepNet', 'network.RepNet', ([], {}), False, 'import network\n'), (32, 'tensorflow.optimizers.Adam', 'tf.optimizers.Adam', (['(0.0001)', '(0.5)'], {}), True, 'import tensorflow as tf\n'), (33, 'model3.Saver', 'M.Saver', (['model'], {}), True, 'import model3 as M\n'), (10, 'tensorflow.GradientTape', 'tf.GradientTape', ([], {}), True, 'import tensorflow as tf\n'), (19, 'tensorflow.matmul', 'tf.matmul', (['K', 'K'], {'transpose_b': '(True)'}), True, 'import tensorflow as tf\n'), (17, 'tensorflow.square', 'tf.square', (['(pred - x2d)'], {}), True, 'import tensorflow as tf\n'), (20, 'tensorflow.trace', 'tf.trace', (['KK'], {}), True, 'import tensorflow as tf\n'), (15, 'tensorflow.ones_like', 'tf.ones_like', (['crit_fake'], {}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.eye', 'tf.eye', (['(2)'], {}), True, 'import tensorflow as tf\n'), (14, 'tensorflow.ones_like', 'tf.ones_like', (['crit_real'], {}), True, 'import tensorflow as tf\n'), (14, 'tensorflow.zeros_like', 'tf.zeros_like', (['crit_fake'], {}), True, 'import tensorflow as tf\n')] |
ishine/neurst | 2ba322393fcfed4261b33f4a657e12bbe321baaa | # Copyright 2020 ByteDance Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import tensorflow as tf
from absl import logging
from neurst.data import dataset_utils
from neurst.data.data_pipelines.multilingual_text_data_pipeline import MultilingualTextDataPipeline
from neurst.layers.metric_layers.token_metric_layers import BatchCountMetricLayer, SequenceTokenMetricLayer
from neurst.metrics import build_metric
from neurst.models import build_model
from neurst.models.model_utils import deduce_text_length
from neurst.tasks import register_task
from neurst.tasks.task import Task
from neurst.training.training_utils import maximum_lower_multiple, minimal_multiple
from neurst.utils import compat
from neurst.utils.configurable import deep_merge_dict
from neurst.utils.flags_core import Flag
_TRG_LANG_TAG_POSITIONS = ["source", "target", "src", "trg"]
@register_task
class MultilingualTranslation(Task):
""" Defines the translation task. """
def __init__(self, args):
""" Initializes the task.
Args:
args: A dict of model configurations.
"""
super(MultilingualTranslation, self).__init__(args)
self._multilingual_dp = MultilingualTextDataPipeline(
vocab_path=args["vocab_path"], spm_model=args["spm_model"],
languages=args["languages"])
self._with_src_lang_tag = args["with_src_lang_tag"]
self._trg_lang_tag_position = args["trg_lang_tag_position"]
assert self._trg_lang_tag_position in _TRG_LANG_TAG_POSITIONS
@staticmethod
def class_or_method_args():
this_args = super(MultilingualTranslation, MultilingualTranslation).class_or_method_args()
this_args.extend([
# for creating multilingual pipeline
Flag("vocab_path", dtype=Flag.TYPE.STRING,
help="The path to the vocabulary file, or a list of word tokens."),
Flag("spm_model", dtype=Flag.TYPE.STRING,
help="The path to the sentence piece model."),
Flag("languages", dtype=Flag.TYPE.STRING,
help="A list of languages. The corresponding language tags "
"will automatically append to the vocabulary. "),
# for preprocessing data
Flag("max_src_len", dtype=Flag.TYPE.INTEGER, default=80,
help="The maximum source length of training data."),
Flag("max_trg_len", dtype=Flag.TYPE.INTEGER, default=80,
help="The maximum target length of training data."),
Flag("truncate_src", dtype=Flag.TYPE.BOOLEAN, default=None,
help="Whether to truncate source to max_src_len."),
Flag("truncate_trg", dtype=Flag.TYPE.BOOLEAN, default=None,
help="Whether to truncate target to max_trg_len."),
# for batching dataset
Flag("batch_by_tokens", dtype=Flag.TYPE.BOOLEAN, default=None,
help="Whether to batch the data by word tokens."),
Flag("with_src_lang_tag", dtype=Flag.TYPE.STRING, default=False,
help="Whether to append the source language tag at the beginning of the source sentence."),
Flag("trg_lang_tag_position", dtype=Flag.TYPE.STRING, default="trg",
choices=_TRG_LANG_TAG_POSITIONS,
help="The position where the target language tag will be appended"),
])
return this_args
def get_config(self):
return {
"vocab_path": self._args["vocab_path"],
"spm_model": self._args["spm_model"],
"languages": self._args["languages"],
"with_src_lang_tag": self._with_src_lang_tag,
"trg_lang_tag_position": self._trg_lang_tag_position,
}
def inputs_signature(self, mode):
""" Returns the input dtypes and signatures. """
dtypes = {"feature": tf.int64, "src_lang": tf.int64, "trg_lang": tf.int64}
signatures = {"feature": tf.TensorShape([None, None]),
"src_lang": tf.TensorShape([None, ]),
"trg_lang": tf.TensorShape([None, ])}
if mode == compat.ModeKeys.INFER:
return dtypes, signatures
dtypes["label"] = tf.int64
signatures["label"] = tf.TensorShape([None, None])
return dtypes, signatures
def build_model(self, args, name=None):
""" Builds and return a keras model. """
model = build_model(args, self._multilingual_dp.meta,
self._multilingual_dp.meta, name=name)
return model
def example_to_input(self, batch_of_data: dict, mode) -> dict:
""" Transform the data examples to model acceptable inputs.
Args:
batch_of_data: A data tensor with shape [batch, ...]
mode: The running mode.
Returns: The input data for model.
"""
src = batch_of_data["feature"]
if self._trg_lang_tag_position in ["src", "source"]:
src = tf.concat([tf.expand_dims(batch_of_data["trg_lang"], axis=1), src], axis=1)
if self._with_src_lang_tag:
src = tf.concat([tf.expand_dims(batch_of_data["src_lang"], axis=1), src], axis=1)
input_dict = {"src": src,
"src_length": deduce_text_length(src, self._multilingual_dp.meta["pad_id"],
self._multilingual_dp.meta["padding_mode"])}
if self._trg_lang_tag_position in ["trg", "target"]:
target_bos = batch_of_data["trg_lang"]
else:
target_bos = tf.tile([tf.convert_to_tensor(
self._multilingual_dp.meta["bos_id"], dtype=tf.int64)], [tf.shape(src)[0]])
if mode == compat.ModeKeys.INFER:
input_dict["trg_input"] = target_bos
else:
input_dict["trg"] = batch_of_data["label"]
input_dict["trg_length"] = deduce_text_length(batch_of_data["label"],
self._multilingual_dp.meta["pad_id"],
self._multilingual_dp.meta["padding_mode"])
input_dict["trg_input"] = tf.concat([tf.expand_dims(target_bos, axis=1),
batch_of_data["label"][:, :-1]], axis=1)
return input_dict
def get_data_postprocess_fn(self, data_status, **kwargs) -> callable:
if data_status == compat.DataStatus.PROJECTED:
return self._multilingual_dp.decode
elif data_status == compat.DataStatus.PROCESSED:
return self._multilingual_dp.postprocess
return lambda x: x
def get_data_preprocess_fn(self, mode, data_status=compat.DataStatus.RAW, args=None) -> callable:
""" Preprocess data sample according to this task.
Args:
args: A dict containing dataset arguments.
mode: A ModeKeys indicating the running mode.
data_status: The status of the data sample.
Returns: A callable function to collate (process) a data sample.
"""
if args is None:
args = self._args
else:
args = deep_merge_dict(self._args, args, local_overwrite=False)
truncate_src = args.get("truncate_src", None)
truncate_trg = args.get("truncate_trg", None)
max_src_len = args.get("max_src_len", None)
max_trg_len = args.get("max_trg_len", None)
def _process_and_truncate(text, trunc, max_len):
if data_status != compat.DataStatus.PROJECTED:
text = self._multilingual_dp.encode(
text, is_processed=(data_status == compat.DataStatus.PROCESSED))
if mode == compat.ModeKeys.TRAIN and trunc and max_len:
if compat.is_tf_tensor(text):
text = tf.cond(
tf.less_equal(tf.size(text), max_len), lambda: text,
lambda: tf.concat([text[:(max_len - 1)], text[-1:]], axis=0))
elif len(text) > max_len:
text = text[:(max_len - 1)] + text[-1:]
return text
def _process_lang(lang):
if not compat.is_tf_tensor(lang) and isinstance(lang, str):
return self._multilingual_dp.meta["lang2id"][lang]
assert isinstance(lang, int)
return lang
if mode == compat.ModeKeys.INFER:
return lambda data: {
"feature": _process_and_truncate(data["feature"], truncate_src, max_src_len),
"src_lang": _process_lang(data["src_lang"]),
"trg_lang": _process_lang(data["trg_lang"]), }
return lambda data: {
"feature": _process_and_truncate(data["feature"], truncate_src, max_src_len),
"label": _process_and_truncate(data["label"], truncate_trg, max_trg_len),
"src_lang": _process_lang(data["src_lang"]),
"trg_lang": _process_lang(data["trg_lang"]),
}
def create_and_batch_tfds(self, ds, mode,
args=None, num_replicas_in_sync=1) -> tf.data.Dataset:
""" Creates a dataset according to the `mode`.
Args:
args: A dict containing dataset arguments.
ds: A neurst.data.datasets.Dataset object.
mode: A ModeKeys indicating the running mode.
num_replicas_in_sync: The number of GPUs or other workers. We will generate global
batches, and each global batch is equally divisible by number of replicas.
Returns:
A tf.data.Dataset.
"""
if args is None:
args = self._args
else:
args = deep_merge_dict(self._args, args, local_overwrite=False)
eos = tf.constant(self._multilingual_dp.meta["eos_id"], dtype=tf.int64)
int_zero = tf.zeros([], dtype=tf.int64)
dataset = ds.build(map_func=self.get_data_preprocess_fn(mode, ds.status, args),
map_output_dtypes=self.inputs_signature(mode)[0],
auto_shard=(mode == compat.ModeKeys.TRAIN),
shuffle=(mode == compat.ModeKeys.TRAIN))
if mode == compat.ModeKeys.INFER:
logging.info("Creating test dataset.")
return dataset.cache().padded_batch(
dataset_utils.adjust_batch_size(args["batch_size"],
num_replicas_in_sync=num_replicas_in_sync),
padded_shapes={"feature": [None], "src_lang": [], "trg_lang": []},
padding_values={"feature": eos, "src_lang": int_zero, "trg_lang": int_zero},
drop_remainder=False)
elif mode == compat.ModeKeys.EVAL:
logging.info("Creating evaluation dataset.")
return dataset.cache().padded_batch(
dataset_utils.adjust_batch_size(args["batch_size"],
num_replicas_in_sync=num_replicas_in_sync),
padded_shapes={"feature": [None], "label": [None], "src_lang": [], "trg_lang": []},
padding_values={"feature": eos, "label": eos,
"src_lang": int_zero, "trg_lang": int_zero},
drop_remainder=False)
else:
logging.info("Creating training dataset.")
dataset = dataset_utils.clean_dataset_by_length(
dataset, {"feature": args["max_src_len"], "label": args["max_trg_len"]})
if args["cache_dataset"]:
dataset = dataset.cache()
if args["shuffle_buffer"]:
dataset = dataset.shuffle(buffer_size=args["shuffle_buffer"])
padding_values = {"feature": eos, "label": eos,
"src_lang": int_zero, "trg_lang": int_zero}
if args["max_src_len"] is None:
raise RuntimeError("Must provide `max_src_len` for training.")
if args["max_trg_len"] is None:
raise RuntimeError("Must provide `max_trg_len` for training.")
num_extra_srctokens = 0
if self._with_src_lang_tag:
num_extra_srctokens += 1
if self._trg_lang_tag_position in ["src", "source"]:
num_extra_srctokens += 1
max_src_len = minimal_multiple(args["max_src_len"] + num_extra_srctokens, 8)
max_trg_len = minimal_multiple(args["max_trg_len"], 8)
batch_size = dataset_utils.adjust_batch_size(args["batch_size"], args["batch_size_per_gpu"],
num_replicas_in_sync=num_replicas_in_sync,
verbose=False)
src_bucket_boundaries = [8 * i for i in range(1, max_src_len // 8 + 1)]
if src_bucket_boundaries[-1] < max_src_len:
src_bucket_boundaries.append(minimal_multiple(src_bucket_boundaries[-1] + 1, 8))
trg_bucket_boundaries = [8 * i for i in range(1, max_trg_len // 8 + 1)]
if trg_bucket_boundaries[-1] < max_trg_len:
trg_bucket_boundaries.append(minimal_multiple(trg_bucket_boundaries[-1] + 1, 8))
src_bucket_boundaries, trg_bucket_boundaries = dataset_utils.associated_bucket_boundaries(
src_bucket_boundaries, trg_bucket_boundaries)
src_bucket_boundaries = [x - num_extra_srctokens for x in src_bucket_boundaries]
bucket_boundaries = {
"feature": src_bucket_boundaries,
"label": trg_bucket_boundaries
}
bucket_batch_sizes = dataset_utils.adjust_batch_size(
batch_size,
bucket_boundaries=bucket_boundaries if args["batch_by_tokens"] else None,
boundaries_reduce_to_length_fn=lambda x: max(tf.nest.flatten(x)),
num_replicas_in_sync=num_replicas_in_sync)
if isinstance(bucket_batch_sizes, list):
bucket_batch_sizes = [
int(maximum_lower_multiple(x // num_replicas_in_sync, 8) * num_replicas_in_sync)
for x in bucket_batch_sizes]
else:
bucket_batch_sizes = int(maximum_lower_multiple(
bucket_batch_sizes // num_replicas_in_sync, 8) * num_replicas_in_sync)
return dataset_utils.batch_examples_by_token(
dataset,
bucket_boundaries=bucket_boundaries,
bucket_batch_sizes=bucket_batch_sizes,
padding_values=padding_values,
example_length_func=lambda x: {"feature": tf.size(x["feature"]),
"label": tf.size(x["label"])},
extra_padded_shapes={"src_lang": [], "trg_lang": []}
)
def build_metric_layer(self):
return [SequenceTokenMetricLayer("src"), SequenceTokenMetricLayer("trg"),
BatchCountMetricLayer("src")]
def get_eval_metric(self, args, name="metric", ds=None):
""" Returns a neurst.metrics.metric.Metric object for evaluation."""
if ds is None or not hasattr(ds, "trg_lang") or ds.trg_lang is None:
logging.info("WARNING: The dataset must have `trg_lang` property, "
"otherwise no metric will be created.")
return None
return build_metric(args[name + ".class"], language=ds.trg_lang,
**args[name + ".params"])
| [
"tensorflow.convert_to_tensor",
"tensorflow.TensorShape",
"tensorflow.constant",
"tensorflow.concat",
"tensorflow.zeros",
"tensorflow.shape",
"tensorflow.expand_dims",
"tensorflow.nest.flatten",
"tensorflow.size"
] | neurst/tasks/multilingual_translation.py | [(44, 'neurst.data.data_pipelines.multilingual_text_data_pipeline.MultilingualTextDataPipeline', 'MultilingualTextDataPipeline', ([], {'vocab_path': "args['vocab_path']", 'spm_model': "args['spm_model']", 'languages': "args['languages']"}), False, 'from neurst.data.data_pipelines.multilingual_text_data_pipeline import MultilingualTextDataPipeline\n'), (101, 'tensorflow.TensorShape', 'tf.TensorShape', (['[None, None]'], {}), True, 'import tensorflow as tf\n'), (106, 'neurst.models.build_model', 'build_model', (['args', 'self._multilingual_dp.meta', 'self._multilingual_dp.meta'], {'name': 'name'}), False, 'from neurst.models import build_model\n'), (219, 'tensorflow.constant', 'tf.constant', (["self._multilingual_dp.meta['eos_id']"], {'dtype': 'tf.int64'}), True, 'import tensorflow as tf\n'), (220, 'tensorflow.zeros', 'tf.zeros', (['[]'], {'dtype': 'tf.int64'}), True, 'import tensorflow as tf\n'), (315, 'neurst.metrics.build_metric', 'build_metric', (["args[name + '.class']"], {'language': 'ds.trg_lang'}), False, 'from neurst.metrics import build_metric\n'), (95, 'tensorflow.TensorShape', 'tf.TensorShape', (['[None, None]'], {}), True, 'import tensorflow as tf\n'), (96, 'tensorflow.TensorShape', 'tf.TensorShape', (['[None]'], {}), True, 'import tensorflow as tf\n'), (97, 'tensorflow.TensorShape', 'tf.TensorShape', (['[None]'], {}), True, 'import tensorflow as tf\n'), (126, 'neurst.models.model_utils.deduce_text_length', 'deduce_text_length', (['src', "self._multilingual_dp.meta['pad_id']", "self._multilingual_dp.meta['padding_mode']"], {}), False, 'from neurst.models.model_utils import deduce_text_length\n'), (137, 'neurst.models.model_utils.deduce_text_length', 'deduce_text_length', (["batch_of_data['label']", "self._multilingual_dp.meta['pad_id']", "self._multilingual_dp.meta['padding_mode']"], {}), False, 'from neurst.models.model_utils import deduce_text_length\n'), (164, 'neurst.utils.configurable.deep_merge_dict', 'deep_merge_dict', (['self._args', 'args'], {'local_overwrite': '(False)'}), False, 'from neurst.utils.configurable import deep_merge_dict\n'), (218, 'neurst.utils.configurable.deep_merge_dict', 'deep_merge_dict', (['self._args', 'args'], {'local_overwrite': '(False)'}), False, 'from neurst.utils.configurable import deep_merge_dict\n'), (228, 'absl.logging.info', 'logging.info', (['"""Creating test dataset."""'], {}), False, 'from absl import logging\n'), (306, 'neurst.layers.metric_layers.token_metric_layers.SequenceTokenMetricLayer', 'SequenceTokenMetricLayer', (['"""src"""'], {}), False, 'from neurst.layers.metric_layers.token_metric_layers import BatchCountMetricLayer, SequenceTokenMetricLayer\n'), (306, 'neurst.layers.metric_layers.token_metric_layers.SequenceTokenMetricLayer', 'SequenceTokenMetricLayer', (['"""trg"""'], {}), False, 'from neurst.layers.metric_layers.token_metric_layers import BatchCountMetricLayer, SequenceTokenMetricLayer\n'), (307, 'neurst.layers.metric_layers.token_metric_layers.BatchCountMetricLayer', 'BatchCountMetricLayer', (['"""src"""'], {}), False, 'from neurst.layers.metric_layers.token_metric_layers import BatchCountMetricLayer, SequenceTokenMetricLayer\n'), (312, 'absl.logging.info', 'logging.info', (['"""WARNING: The dataset must have `trg_lang` property, otherwise no metric will be created."""'], {}), False, 'from absl import logging\n'), (56, 'neurst.utils.flags_core.Flag', 'Flag', (['"""vocab_path"""'], {'dtype': 'Flag.TYPE.STRING', 'help': '"""The path to the vocabulary file, or a list of word tokens."""'}), False, 'from neurst.utils.flags_core import Flag\n'), (58, 'neurst.utils.flags_core.Flag', 'Flag', (['"""spm_model"""'], {'dtype': 'Flag.TYPE.STRING', 'help': '"""The path to the sentence piece model."""'}), False, 'from neurst.utils.flags_core import Flag\n'), (60, 'neurst.utils.flags_core.Flag', 'Flag', (['"""languages"""'], {'dtype': 'Flag.TYPE.STRING', 'help': '"""A list of languages. 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'minimal_multiple', (["args['max_trg_len']", '(8)'], {}), False, 'from neurst.training.training_utils import maximum_lower_multiple, minimal_multiple\n'), (267, 'neurst.data.dataset_utils.adjust_batch_size', 'dataset_utils.adjust_batch_size', (["args['batch_size']", "args['batch_size_per_gpu']"], {'num_replicas_in_sync': 'num_replicas_in_sync', 'verbose': '(False)'}), False, 'from neurst.data import dataset_utils\n'), (276, 'neurst.data.dataset_utils.associated_bucket_boundaries', 'dataset_utils.associated_bucket_boundaries', (['src_bucket_boundaries', 'trg_bucket_boundaries'], {}), False, 'from neurst.data import dataset_utils\n'), (121, 'tensorflow.expand_dims', 'tf.expand_dims', (["batch_of_data['trg_lang']"], {'axis': '(1)'}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.expand_dims', 'tf.expand_dims', (["batch_of_data['src_lang']"], {'axis': '(1)'}), True, 'import tensorflow as tf\n'), (131, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (["self._multilingual_dp.meta['bos_id']"], {'dtype': 'tf.int64'}), True, 'import tensorflow as tf\n'), (140, 'tensorflow.expand_dims', 'tf.expand_dims', (['target_bos'], {'axis': '(1)'}), True, 'import tensorflow as tf\n'), (184, 'neurst.utils.compat.is_tf_tensor', 'compat.is_tf_tensor', (['lang'], {}), False, 'from neurst.utils import compat\n'), (238, 'neurst.data.dataset_utils.adjust_batch_size', 'dataset_utils.adjust_batch_size', (["args['batch_size']"], {'num_replicas_in_sync': 'num_replicas_in_sync'}), False, 'from neurst.data import dataset_utils\n'), (132, 'tensorflow.shape', 'tf.shape', (['src'], {}), True, 'import tensorflow as tf\n'), (272, 'neurst.training.training_utils.minimal_multiple', 'minimal_multiple', (['(src_bucket_boundaries[-1] + 1)', '(8)'], {}), False, 'from neurst.training.training_utils import maximum_lower_multiple, minimal_multiple\n'), (275, 'neurst.training.training_utils.minimal_multiple', 'minimal_multiple', (['(trg_bucket_boundaries[-1] + 1)', '(8)'], {}), False, 'from neurst.training.training_utils import maximum_lower_multiple, minimal_multiple\n'), (177, 'tensorflow.size', 'tf.size', (['text'], {}), True, 'import tensorflow as tf\n'), (178, 'tensorflow.concat', 'tf.concat', (['[text[:max_len - 1], text[-1:]]'], {'axis': '(0)'}), True, 'import tensorflow as tf\n'), (293, 'neurst.training.training_utils.maximum_lower_multiple', 'maximum_lower_multiple', (['(bucket_batch_sizes // num_replicas_in_sync)', '(8)'], {}), False, 'from neurst.training.training_utils import maximum_lower_multiple, minimal_multiple\n'), (286, 'tensorflow.nest.flatten', 'tf.nest.flatten', (['x'], {}), True, 'import tensorflow as tf\n'), (290, 'neurst.training.training_utils.maximum_lower_multiple', 'maximum_lower_multiple', (['(x // num_replicas_in_sync)', '(8)'], {}), False, 'from neurst.training.training_utils import maximum_lower_multiple, minimal_multiple\n'), (300, 'tensorflow.size', 'tf.size', (["x['feature']"], {}), True, 'import tensorflow as tf\n'), (301, 'tensorflow.size', 'tf.size', (["x['label']"], {}), True, 'import tensorflow as tf\n')] |
totucuong/vae-seq | 0a1bace02c6bac6ab991ab8203a203d3061615ec | # Copyright 2018 Google, Inc.,
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Dataset for iterating over text."""
import collections
import numpy as np
import tensorflow as tf
def _split_string(string):
"""Splits a byte string into an array of character bytes."""
text = tf.compat.as_text(string)
ret = np.empty(len(text), dtype=np.object)
for i, char in enumerate(text):
ret[i] = tf.compat.as_bytes(char)
return ret
def vocabulary(filename, max_size=None, num_oov_buckets=1):
"""Builds vocabulary and ID lookup tables from the given file."""
def _unique_chars(filename):
"""Returns the used alphabet as an array of strings."""
counts = collections.Counter()
with tf.gfile.Open(filename) as file_:
for line in file_:
counts.update(_split_string(line))
alphabet = [k for (k, _) in counts.most_common(max_size)]
alphabet.sort()
return np.asarray(alphabet, dtype=np.object)
chars, = tf.py_func(_unique_chars, [filename], [tf.string])
char_to_id = tf.contrib.lookup.index_table_from_tensor(
chars, num_oov_buckets=num_oov_buckets)
id_to_char = tf.contrib.lookup.index_to_string_table_from_tensor(chars, " ")
return char_to_id, id_to_char
def characters(filename, batch_size, sequence_size):
"""Returns a dataset of characters from the given file."""
def _to_chars(line):
"""string scalar -> Dataset of characters (string scalars)."""
chars, = tf.py_func(_split_string, [line + "\n"], [tf.string])
chars.set_shape([None])
return tf.data.Dataset.from_tensor_slices(chars)
return (tf.data.TextLineDataset([filename])
.flat_map(_to_chars)
.repeat()
.batch(tf.to_int64(sequence_size))
.shuffle(1000)
.batch(tf.to_int64(batch_size)))
| [
"tensorflow.contrib.lookup.index_to_string_table_from_tensor",
"tensorflow.to_int64",
"tensorflow.contrib.lookup.index_table_from_tensor",
"tensorflow.gfile.Open",
"numpy.asarray",
"tensorflow.data.Dataset.from_tensor_slices",
"tensorflow.compat.as_bytes",
"tensorflow.data.TextLineDataset",
"tensorflow.compat.as_text",
"tensorflow.py_func"
] | vaeseq/examples/text/dataset.py | [(24, 'tensorflow.compat.as_text', 'tf.compat.as_text', (['string'], {}), True, 'import tensorflow as tf\n'), (44, 'tensorflow.py_func', 'tf.py_func', (['_unique_chars', '[filename]', '[tf.string]'], {}), True, 'import tensorflow as tf\n'), (45, 'tensorflow.contrib.lookup.index_table_from_tensor', 'tf.contrib.lookup.index_table_from_tensor', (['chars'], {'num_oov_buckets': 'num_oov_buckets'}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.contrib.lookup.index_to_string_table_from_tensor', 'tf.contrib.lookup.index_to_string_table_from_tensor', (['chars', '""" """'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.compat.as_bytes', 'tf.compat.as_bytes', (['char'], {}), True, 'import tensorflow as tf\n'), (36, 'collections.Counter', 'collections.Counter', ([], {}), False, 'import collections\n'), (42, 'numpy.asarray', 'np.asarray', (['alphabet'], {'dtype': 'np.object'}), True, 'import numpy as np\n'), (56, 'tensorflow.py_func', 'tf.py_func', (['_split_string', "[line + '\\n']", '[tf.string]'], {}), True, 'import tensorflow as tf\n'), (58, 'tensorflow.data.Dataset.from_tensor_slices', 'tf.data.Dataset.from_tensor_slices', (['chars'], {}), True, 'import tensorflow as tf\n'), (65, 'tensorflow.to_int64', 'tf.to_int64', (['batch_size'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.gfile.Open', 'tf.gfile.Open', (['filename'], {}), True, 'import tensorflow as tf\n'), (63, 'tensorflow.to_int64', 'tf.to_int64', (['sequence_size'], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.data.TextLineDataset', 'tf.data.TextLineDataset', (['[filename]'], {}), True, 'import tensorflow as tf\n')] |
alexus37/MasterThesisCode | a7eada603686de75968acc8586fd307a91b0491b | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import sys
import numpy as np
from skimage.util import view_as_windows
import warnings
import logging
import tensorflow as tf
from tqdm import tqdm
from tensorflow.python.ops import nn_grad, math_grad
from deepexplain.tf.v2_x.utils import make_batches, slice_arrays, to_list, unpack_singleton, placeholder_from_data, original_grad, activation
from deepexplain.tf.v2_x.baseClasses import GradientBasedMethod, PerturbationBasedMethod
from deepexplain.tf.v2_x import constants
# -----------------------------------------------------------------------------
# ATTRIBUTION METHODS
# -----------------------------------------------------------------------------
"""
Returns zero attributions. For testing only.
"""
class DummyZero(GradientBasedMethod):
def get_symbolic_attribution(self,):
return tf.gradients(ys=self.T, xs=self.X)
@classmethod
def nonlinearity_grad_override(cls, op, grad):
input = op.inputs[0]
return tf.zeros_like(input)
"""
Saliency maps
https://arxiv.org/abs/1312.6034
"""
class Saliency(GradientBasedMethod):
def get_symbolic_attribution(self):
return [tf.abs(g) for g in tf.gradients(ys=self.T, xs=self.X)]
"""
Gradient * Input
https://arxiv.org/pdf/1704.02685.pdf - https://arxiv.org/abs/1611.07270
"""
class GradientXInput(GradientBasedMethod):
def get_symbolic_attribution(self):
return [g * x for g, x in zip(
tf.gradients(ys=self.T, xs=self.X),
self.X if self.has_multiple_inputs else [self.X])]
"""
Layer-wise Relevance Propagation with epsilon rule
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0130140
"""
class EpsilonLRP(GradientBasedMethod):
eps = None
def __init__(self, T, X, session, keras_learning_phase, epsilon=1e-4, Y_shape=None):
assert epsilon > 0.0, 'LRP epsilon must be greater than zero'
global eps
eps = epsilon
super(EpsilonLRP, self).__init__(T, X, session, keras_learning_phase, Y_shape)
def get_symbolic_attribution(self):
return [g * x for g, x in zip(
tf.gradients(ys=self.T, xs=self.X),
self.X if self.has_multiple_inputs else [self.X])]
@classmethod
def nonlinearity_grad_override(cls, op, grad):
output = op.outputs[0]
input = op.inputs[0]
return grad * output / (input + eps *
tf.compat.v1.where(input >= 0, tf.ones_like(input), -1 * tf.ones_like(input)))
"""
Integrated Gradients
https://arxiv.org/pdf/1703.01365.pdf
"""
class IntegratedGradients(GradientBasedMethod):
def __init__(self, T, X, session, keras_learning_phase, steps=100, baseline=None, Y_shape=None):
self.steps = steps
self.baseline = baseline
super(IntegratedGradients, self).__init__(T, X, session, keras_learning_phase, Y_shape)
def run(self, xs, ys=None, batch_size=None):
self._check_input_compatibility(xs, ys, batch_size)
gradient = None
for alpha in tqdm(list(np.linspace(1. / self.steps, 1.0, self.steps))):
xs_mod = [b + (x - b) * alpha for x, b in zip(xs, self.baseline)] if self.has_multiple_inputs \
else self.baseline + (xs - self.baseline) * alpha
_attr = self._session_run(self.explain_symbolic(), xs_mod, ys, batch_size)
if gradient is None: gradient = _attr
else: gradient = [g + a for g, a in zip(gradient, _attr)]
results = [g * (x - b) / self.steps for g, x, b in zip(
gradient,
xs if self.has_multiple_inputs else [xs],
self.baseline if self.has_multiple_inputs else [self.baseline])]
return results[0] if not self.has_multiple_inputs else results
"""
DeepLIFT
This reformulation only considers the "Rescale" rule
https://arxiv.org/abs/1704.02685
"""
class DeepLIFTRescale(GradientBasedMethod):
_deeplift_ref = {}
def __init__(self, T, X, session, keras_learning_phase, baseline=None, Y_shape=None):
self.baseline = baseline
super(DeepLIFTRescale, self).__init__(T, X, session, keras_learning_phase, Y_shape)
def get_symbolic_attribution(self):
return [g * (x - b) for g, x, b in zip(
tf.gradients(ys=self.T, xs=self.X),
self.X if self.has_multiple_inputs else [self.X],
self.baseline if self.has_multiple_inputs else [self.baseline])]
@classmethod
def nonlinearity_grad_override(cls, op, grad):
output = op.outputs[0]
input = op.inputs[0]
ref_input = cls._deeplift_ref[op.name]
ref_output = activation(op.type)(ref_input)
delta_out = output - ref_output
delta_in = input - ref_input
instant_grad = activation(op.type)(0.5 * (ref_input + input))
return tf.compat.v1.where(tf.abs(delta_in) > 1e-5, grad * delta_out / delta_in,
original_grad(instant_grad.op, grad))
def _init_references(self):
# print ('DeepLIFT: computing references...')
sys.stdout.flush()
self._deeplift_ref.clear()
ops = []
g = tf.compat.v1.get_default_graph()
for op in g.get_operations():
if len(op.inputs) > 0 and not op.name.startswith('gradients'):
if op.type in constants.SUPPORTED_ACTIVATIONS:
ops.append(op)
YR = self._session_run([o.inputs[0] for o in ops], self.baseline)
for (r, op) in zip(YR, ops):
self._deeplift_ref[op.name] = r
# print('DeepLIFT: references ready')
sys.stdout.flush()
"""
Occlusion method
Generalization of the grey-box method presented in https://arxiv.org/pdf/1311.2901.pdf
This method performs a systematic perturbation of contiguous hyperpatches in the input,
replacing each patch with a user-defined value (by default 0).
window_shape : integer or tuple of length xs_ndim
Defines the shape of the elementary n-dimensional orthotope the rolling window view.
If an integer is given, the shape will be a hypercube of sidelength given by its value.
step : integer or tuple of length xs_ndim
Indicates step size at which extraction shall be performed.
If integer is given, then the step is uniform in all dimensions.
"""
class Occlusion(PerturbationBasedMethod):
def __init__(self, T, X, session, keras_learning_phase, window_shape=None, step=None):
super(Occlusion, self).__init__(T, X, session, keras_learning_phase)
if self.has_multiple_inputs:
raise RuntimeError('Multiple inputs not yet supported for perturbation methods')
input_shape = X[0].get_shape().as_list()
if window_shape is not None:
assert len(window_shape) == len(input_shape), \
'window_shape must have length of input (%d)' % len(input_shape)
self.window_shape = tuple(window_shape)
else:
self.window_shape = (1,) * len(input_shape)
if step is not None:
assert isinstance(step, int) or len(step) == len(input_shape), \
'step must be integer or tuple with the length of input (%d)' % len(input_shape)
self.step = step
else:
self.step = 1
self.replace_value = 0.0
logging.info('Input shape: %s; window_shape %s; step %s' % (input_shape, self.window_shape, self.step))
def run(self, xs, ys=None, batch_size=None):
self._check_input_compatibility(xs, ys, batch_size)
input_shape = xs.shape[1:]
batch_size = xs.shape[0]
total_dim = np.prod(input_shape).item()
# Create mask
index_matrix = np.arange(total_dim).reshape(input_shape)
idx_patches = view_as_windows(index_matrix, self.window_shape, self.step).reshape((-1,) + self.window_shape)
heatmap = np.zeros_like(xs, dtype=np.float32).reshape((-1), total_dim)
w = np.zeros_like(heatmap)
# Compute original output
eval0 = self._session_run(self.T, xs, ys, batch_size)
# Start perturbation loop
for i, p in enumerate(tqdm(idx_patches)):
mask = np.ones(input_shape).flatten()
mask[p.flatten()] = self.replace_value
masked_xs = mask.reshape((1,) + input_shape) * xs
delta = eval0 - self._session_run(self.T, masked_xs, ys, batch_size)
delta_aggregated = np.sum(delta.reshape((batch_size, -1)), -1, keepdims=True)
heatmap[:, p.flatten()] += delta_aggregated
w[:, p.flatten()] += p.size
attribution = np.reshape(heatmap / w, xs.shape)
if np.isnan(attribution).any():
warnings.warn('Attributions generated by Occlusion method contain nans, '
'probably because window_shape and step do not allow to cover the all input.')
return attribution
"""
Shapley Value sampling
Computes approximate Shapley Values using "Polynomial calculation of the Shapley value based on sampling",
Castro et al, 2009 (https://www.sciencedirect.com/science/article/pii/S0305054808000804)
samples : integer (default 5)
Defined the number of samples for each input feature.
Notice that evaluating a model samples * n_input_feature times might take a while.
sampling_dims : list of dimension indexes to run sampling on (feature dimensions).
By default, all dimensions except the batch dimension will be sampled.
For example, with a 4-D tensor that contains color images, single color channels are sampled.
To sample pixels, instead, use sampling_dims=[1,2]
"""
class ShapleySampling(PerturbationBasedMethod):
def __init__(self, T, X, session, keras_learning_phase, samples=5, sampling_dims=None, Y_shape=None):
super(ShapleySampling, self).__init__(T, X, session, keras_learning_phase, Y_shape)
if self.has_multiple_inputs:
raise RuntimeError('Multiple inputs not yet supported for perturbation methods')
dims = len(X.shape)
if sampling_dims is not None:
if not 0 < len(sampling_dims) <= (dims - 1):
raise RuntimeError('sampling_dims must be a list containing 1 to %d elements' % (dims-1))
if 0 in sampling_dims:
raise RuntimeError('Cannot sample batch dimension: remove 0 from sampling_dims')
if any([x < 1 or x > dims-1 for x in sampling_dims]):
raise RuntimeError('Invalid value in sampling_dims')
else:
sampling_dims = list(range(1, dims))
self.samples = samples
self.sampling_dims = sampling_dims
def run(self, xs, ys=None, batch_size=None):
xs_shape = list(xs.shape)
batch_size = xs.shape[0]
n_features = int(np.prod([xs.shape[i] for i in self.sampling_dims]).item())
result = np.zeros((xs_shape[0], n_features))
run_shape = list(xs_shape) # a copy
run_shape = np.delete(run_shape, self.sampling_dims).tolist()
run_shape.insert(1, -1)
reconstruction_shape = [xs_shape[0]]
for j in self.sampling_dims:
reconstruction_shape.append(xs_shape[j])
with tqdm(total=self.samples * n_features) as pbar:
for _ in range(self.samples):
p = np.random.permutation(n_features)
x = xs.copy().reshape(run_shape)
y = None
for i in p:
if y is None:
y = self._session_run(self.T, x.reshape(xs_shape), ys, batch_size)
x[:, i] = 0
y0 = self._session_run(self.T, x.reshape(xs_shape), ys, batch_size)
delta = y - y0
delta_aggregated = np.sum(delta.reshape((batch_size, -1)), -1, keepdims=False)
result[:, i] += delta_aggregated
y = y0
pbar.update(1)
shapley = result / self.samples
return shapley.reshape(reconstruction_shape)
| [
"tensorflow.compat.v1.get_default_graph",
"numpy.linspace",
"numpy.reshape",
"numpy.arange",
"numpy.isnan",
"tensorflow.gradients",
"tensorflow.ones_like",
"numpy.ones",
"tensorflow.zeros_like",
"numpy.delete",
"numpy.random.permutation",
"numpy.zeros_like",
"numpy.prod",
"numpy.zeros",
"tensorflow.abs"
] | deepexplain/tf/v2_x/methods.py | [(30, 'tensorflow.gradients', 'tf.gradients', ([], {'ys': 'self.T', 'xs': 'self.X'}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.zeros_like', 'tf.zeros_like', (['input'], {}), True, 'import tensorflow as tf\n'), (152, 'sys.stdout.flush', 'sys.stdout.flush', ([], {}), False, 'import sys\n'), (155, 'tensorflow.compat.v1.get_default_graph', 'tf.compat.v1.get_default_graph', ([], {}), True, 'import tensorflow as tf\n'), (164, 'sys.stdout.flush', 'sys.stdout.flush', ([], {}), False, 'import sys\n'), (203, 'logging.info', 'logging.info', (["('Input shape: %s; window_shape %s; step %s' % (input_shape, self.\n window_shape, self.step))"], {}), False, 'import logging\n'), (215, 'numpy.zeros_like', 'np.zeros_like', (['heatmap'], {}), True, 'import numpy as np\n'), (230, 'numpy.reshape', 'np.reshape', (['(heatmap / w)', 'xs.shape'], {}), True, 'import numpy as np\n'), (275, 'numpy.zeros', 'np.zeros', (['(xs_shape[0], n_features)'], {}), True, 'import numpy as np\n'), (46, 'tensorflow.abs', 'tf.abs', (['g'], {}), True, 'import tensorflow as tf\n'), (143, 'deepexplain.tf.v2_x.utils.activation', 'activation', (['op.type'], {}), False, 'from deepexplain.tf.v2_x.utils import make_batches, slice_arrays, to_list, unpack_singleton, placeholder_from_data, original_grad, activation\n'), (146, 'deepexplain.tf.v2_x.utils.activation', 'activation', (['op.type'], {}), False, 'from deepexplain.tf.v2_x.utils import make_batches, slice_arrays, to_list, unpack_singleton, placeholder_from_data, original_grad, activation\n'), (148, 'deepexplain.tf.v2_x.utils.original_grad', 'original_grad', (['instant_grad.op', 'grad'], {}), False, 'from deepexplain.tf.v2_x.utils import make_batches, slice_arrays, to_list, unpack_singleton, placeholder_from_data, original_grad, activation\n'), (221, 'tqdm.tqdm', 'tqdm', (['idx_patches'], {}), False, 'from tqdm import tqdm\n'), (232, 'warnings.warn', 'warnings.warn', (['"""Attributions generated by Occlusion method contain nans, probably because window_shape and step do not allow to cover the all input."""'], {}), False, 'import warnings\n'), (284, 'tqdm.tqdm', 'tqdm', ([], {'total': '(self.samples * n_features)'}), False, 'from tqdm import tqdm\n'), (46, 'tensorflow.gradients', 'tf.gradients', ([], {'ys': 'self.T', 'xs': 'self.X'}), True, 'import tensorflow as tf\n'), (103, 'numpy.linspace', 'np.linspace', (['(1.0 / self.steps)', '(1.0)', 'self.steps'], {}), True, 'import numpy as np\n'), (147, 'tensorflow.abs', 'tf.abs', (['delta_in'], {}), True, 'import tensorflow as tf\n'), (209, 'numpy.prod', 'np.prod', (['input_shape'], {}), True, 'import numpy as np\n'), (212, 'numpy.arange', 'np.arange', (['total_dim'], {}), True, 'import numpy as np\n'), (213, 'skimage.util.view_as_windows', 'view_as_windows', (['index_matrix', 'self.window_shape', 'self.step'], {}), False, 'from skimage.util import view_as_windows\n'), (214, 'numpy.zeros_like', 'np.zeros_like', (['xs'], {'dtype': 'np.float32'}), True, 'import numpy as np\n'), (231, 'numpy.isnan', 'np.isnan', (['attribution'], {}), True, 'import numpy as np\n'), (278, 'numpy.delete', 'np.delete', (['run_shape', 'self.sampling_dims'], {}), True, 'import numpy as np\n'), (286, 'numpy.random.permutation', 'np.random.permutation', (['n_features'], {}), True, 'import numpy as np\n'), (58, 'tensorflow.gradients', 'tf.gradients', ([], {'ys': 'self.T', 'xs': 'self.X'}), True, 'import tensorflow as tf\n'), (78, 'tensorflow.gradients', 'tf.gradients', ([], {'ys': 'self.T', 'xs': 'self.X'}), True, 'import tensorflow as tf\n'), (134, 'tensorflow.gradients', 'tf.gradients', ([], {'ys': 'self.T', 'xs': 'self.X'}), True, 'import tensorflow as tf\n'), (222, 'numpy.ones', 'np.ones', (['input_shape'], {}), True, 'import numpy as np\n'), (274, 'numpy.prod', 'np.prod', (['[xs.shape[i] for i in self.sampling_dims]'], {}), True, 'import numpy as np\n'), (86, 'tensorflow.ones_like', 'tf.ones_like', (['input'], {}), True, 'import tensorflow as tf\n'), (86, 'tensorflow.ones_like', 'tf.ones_like', (['input'], {}), True, 'import tensorflow as tf\n')] |
jheo4/incubator-tvm | c4c61cb766608fb2f0fd8c9facc480a43afed3f5 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
import numpy as np
import tvm
from tvm import relay
from tvm.contrib import graph_runtime
from tvm.relay.testing.config import ctx_list
import keras
import tensorflow as tf
from tensorflow import keras as tf_keras
# prevent Keras from using up all gpu memory
if tf.executing_eagerly():
gpus = tf.config.list_physical_devices('GPU')
for gpu in gpus:
tf.config.experimental.set_memory_growth(gpu, True)
else:
from keras.backend.tensorflow_backend import set_session
config = tf.ConfigProto()
config.gpu_options.per_process_gpu_memory_fraction = 0.5
set_session(tf.Session(config=config))
def pytest_generate_tests(metafunc):
# This function generates the list of tests for pytest, based
# on scenatios that will change the parameters in which the
# tests use to run.
# https://docs.pytest.org/en/latest/example/parametrize.html
idlist = []
argvalues = []
for scenario in metafunc.cls.scenarios:
idlist.append(scenario[0])
items = scenario[1].items()
argnames = [x[0] for x in items]
argvalues.append([x[1] for x in items])
metafunc.parametrize(argnames, argvalues, ids=idlist, scope="class")
# Scenarios:
# - classic keras, using keras from "import keras"
# - tensorflow keras, using keras from "from tensorflow import keras as tf_keras"
using_classic_keras = ("keras", {"keras": keras})
using_tensorflow_keras = ("tf_keras", {"keras": tf_keras})
def verify_keras_frontend(keras_model, need_transpose=True, layout='NCHW'):
# Keras frontend currently supports tensorflow backend only.
assert(keras.backend.backend() == 'tensorflow')
if layout != 'NCHW':
need_transpose = False
in_shapes = []
for layer in keras_model._input_layers:
if tf.executing_eagerly():
in_shapes.append(tuple(dim if dim is not None else 1 for dim in layer.input.shape))
else:
in_shapes.append(tuple(dim.value if dim.value is not None else 1 for dim in layer.input.shape))
def get_keras_output(xs, dtype='float32'):
return keras_model.predict(xs)
def get_tvm_output(xs, target, ctx, dtype='float32'):
shape_dict = {name: x.shape for (name, x) in zip(keras_model.input_names, xs)}
mod, params = relay.frontend.from_keras(keras_model, shape_dict, layout=layout)
with relay.transform.build_config(opt_level=2):
graph, lib, params = relay.build(mod,
target,
params=params)
m = graph_runtime.create(graph, lib, ctx)
for name, x in zip(keras_model.input_names, xs):
m.set_input(name, tvm.nd.array(x.astype(dtype)))
m.set_input(**params)
m.run()
return [m.get_output(i).asnumpy() for i in range(m.get_num_outputs())]
def to_channels_first(arr):
return arr.transpose([0, -1] + list(range(1, arr.ndim - 1)))
def to_channels_last(arr):
return arr.transpose([0] + list(range(2, arr.ndim)) + [1])
xs = [np.random.uniform(size=shape, low=-1.0, high=1.0) for shape in in_shapes]
keras_out = get_keras_output(xs)
keras_out = keras_out if isinstance(keras_out, list) else [keras_out]
for target, ctx in ctx_list():
inputs = [to_channels_first(x) for x in xs] if need_transpose else xs
tvm_out = get_tvm_output(inputs, target, ctx)
for kout, tout in zip(keras_out, tvm_out):
if need_transpose:
tout = to_channels_last(tout)
tvm.testing.assert_allclose(kout, tout, rtol=1e-5, atol=1e-5)
class TestKeras:
scenarios = [using_classic_keras, using_tensorflow_keras]
def test_forward_merge(self, keras):
data = keras.layers.Input(shape=(32, 32, 3))
x = keras.layers.Conv2D(8, (3, 3), padding="same")(data)
y = keras.layers.Conv2D(8, (3, 3), padding="same")(x)
z = keras.layers.Conv2D(8, (3, 3), padding="same")(y)
merge_funcs = [keras.layers.Add(),
keras.layers.Subtract(),
keras.layers.Multiply(),
keras.layers.Maximum(),
keras.layers.Average(),
keras.layers.Concatenate()]
for merge_func in merge_funcs:
class_name = type(merge_func).__name__
if class_name in ('Subtract', 'Dot'):
out = merge_func([x, y])
else:
out = merge_func([x, y, z])
keras_model = keras.models.Model(data, out)
verify_keras_frontend(keras_model)
def test_forward_merge_dot(self, keras):
data1 = keras.layers.Input(shape=(2, 2))
data2 = keras.layers.Input(shape=(2, 2))
merge_funcs = [keras.layers.Dot(axes=[1, 2]),
keras.layers.Dot(axes=[2, 1]),
keras.layers.Dot(axes=[1, 1]),
keras.layers.Dot(axes=[2, 2]),
keras.layers.Dot(axes=1),
keras.layers.Dot(axes=2)]
for merge_func in merge_funcs:
out = merge_func([data1, data2])
keras_model = keras.models.Model([data1, data2], out)
verify_keras_frontend(keras_model)
def test_forward_activations(self, keras):
data = keras.layers.Input(shape=(32, 32, 3))
act_funcs = [keras.layers.Activation('softmax'),
keras.layers.Softmax(),
keras.layers.Softmax(axis=-1),
keras.layers.Softmax(axis=1),
keras.layers.Softmax(axis=2),
keras.layers.Softmax(axis=3),
keras.layers.Activation('softplus'),
keras.layers.Activation('relu'),
keras.layers.Activation('softsign'),
keras.layers.Activation('hard_sigmoid'),
keras.layers.Activation('sigmoid'),
keras.layers.Activation('tanh'),
keras.layers.Activation('linear'),
keras.layers.Activation('selu'),
keras.layers.ReLU(),
keras.layers.ReLU(max_value=6.),
keras.layers.ReLU(max_value=6., threshold=0.),
keras.layers.ReLU(max_value=6., threshold=1.),
keras.layers.ReLU(max_value=6., threshold=1., negative_slope=0.),
keras.layers.ReLU(max_value=6., threshold=1., negative_slope=0.5),
keras.layers.ReLU(max_value=6., threshold=1., negative_slope=1.),
keras.layers.LeakyReLU(alpha=0.3),
keras.layers.PReLU(weights=np.random.rand(1, 32, 32, 3)),
keras.layers.ELU(alpha=0.5),
keras.layers.ThresholdedReLU(theta=0.5)]
for act_func in act_funcs:
x = act_func(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
def test_forward_dense(self, keras):
data = keras.layers.Input(shape=(32, 32, 1))
x = keras.layers.Flatten()(data)
x = keras.layers.Dropout(0.5)(x)
x = keras.layers.Dense(10, activation='relu', kernel_initializer='uniform')(x)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
def test_forward_permute(self, keras):
data = keras.layers.Input(shape=(2, 3, 4))
x = keras.layers.Permute([2, 3, 1])(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model, need_transpose=False)
def test_forward_sequential(self, keras):
keras_model = keras.models.Sequential([
keras.layers.Dense(16, input_dim=32, activation='relu'),
keras.layers.Dropout(0.5),
keras.layers.Dense(8, activation='relu'),
keras.layers.Dropout(0.5),
keras.layers.Dense(1, activation='sigmoid')
])
verify_keras_frontend(keras_model)
def test_forward_pool(self, keras):
data = keras.layers.Input(shape=(32, 32, 1))
# maxpool
x = keras.layers.MaxPooling2D((3, 3), strides=(1, 1), padding='same')(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
# avgpool
y = keras.layers.AveragePooling2D((3, 3), strides=(1, 1), padding='same')(data)
keras_model = keras.models.Model(data, y)
verify_keras_frontend(keras_model)
def test_forward_conv(self, keras):
data = keras.layers.Input(shape=(32, 32, 3))
conv_funcs = [keras.layers.Conv2D(filters=10, kernel_size=(3, 3),
strides=(2, 2), padding='same'),
keras.layers.Conv2D(filters=10, kernel_size=(3, 3),
dilation_rate=(2, 2), padding='same'),
keras.layers.Conv2D(filters=1, kernel_size=(3, 3), padding='same'),
keras.layers.DepthwiseConv2D(kernel_size=(3, 3), padding='same'),
keras.layers.Conv2DTranspose(filters=10, kernel_size=(3, 3), padding='valid'),
keras.layers.SeparableConv2D(filters=10, kernel_size=(3, 3), padding='same')]
for conv_func in conv_funcs:
x = conv_func(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
def test_forward_batch_norm(self, keras):
data = keras.layers.Input(shape=(32, 32, 3))
batch_norm_funcs = [keras.layers.BatchNormalization(axis=-1, momentum=0.99, epsilon=0.001,
center=True, scale=False,
beta_initializer='zeros',
gamma_initializer='ones',
moving_mean_initializer='zeros',
moving_variance_initializer='ones'),
keras.layers.BatchNormalization(axis=-1, momentum=0.99, epsilon=0.001,
center=True, scale=True,
beta_initializer='zeros',
gamma_initializer='ones',
moving_mean_initializer='zeros',
moving_variance_initializer='ones'),
keras.layers.BatchNormalization(axis=-1, momentum=0.99, epsilon=0.001,
center=False, scale=True,
beta_initializer='zeros',
gamma_initializer='ones',
moving_mean_initializer='zeros',
moving_variance_initializer='ones'),
keras.layers.BatchNormalization(axis=-1, momentum=0.99, epsilon=0.001,
center=False, scale=False,
beta_initializer='zeros',
gamma_initializer='ones',
moving_mean_initializer='zeros',
moving_variance_initializer='ones')]
for batch_norm_func in batch_norm_funcs:
x = batch_norm_func(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
def test_forward_upsample(self, keras, interpolation='nearest'):
data = keras.layers.Input(shape=(32, 32, 3))
x = keras.layers.UpSampling2D(size=(3, 3), interpolation=interpolation)(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
def test_forward_reshape(self, keras):
# input_shape len is 3, target_shape len is 3
data = keras.layers.Input(shape=(32, 32, 3))
x = keras.layers.Reshape(target_shape=(16, 64, 3))(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
# input_shape len is 3, target_shape len is 2
data = keras.layers.Input(shape=(32, 8, 3))
x = keras.layers.Reshape(target_shape=(256, 3))(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
# input_shape len is 2, target_shape len is 3
data = keras.layers.Input(shape=(256, 3))
x = keras.layers.Reshape(target_shape=(8, 32, 3))(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
# input_shape len is 2, target_shape len is 1
data = keras.layers.Input(shape=(2, 8))
x = keras.layers.Reshape(target_shape=(16,))(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model, need_transpose=False)
# input_shape len is 1, target_shape len is 2
data = keras.layers.Input(shape=(16,))
x = keras.layers.Reshape(target_shape=(4, 4))(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model, need_transpose=False)
# input_shape len is 2, target_shape len is 2
data = keras.layers.Input(shape=(2, 8))
x = keras.layers.Reshape(target_shape=(4, 4))(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model, need_transpose=False)
def test_forward_crop(self, keras):
data = keras.layers.Input(shape=(32, 32, 3))
x = keras.layers.Cropping2D(cropping=((1, 1), (1, 1)))(data)
x = keras.layers.Cropping2D(cropping=(1, 1))(x)
x = keras.layers.Cropping2D(cropping=1)(x)
x = keras.layers.Cropping2D(cropping=((0, 1), (1, 0)))(x)
x = keras.layers.Cropping2D(cropping=(1, 0))(x)
x = keras.layers.Cropping2D(cropping=0)(x)
x = keras.layers.Add()([x, x])
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model)
def test_forward_multi_inputs(self, keras):
data1 = keras.layers.Input(shape=(32, 32, 3))
data2 = keras.layers.Input(shape=(32, 32, 3))
x = keras.layers.Conv2D(8, (3, 3), padding="same")(data1)
y = keras.layers.Conv2D(8, (3, 3), padding="same")(data2)
z = keras.layers.Average()([x, y])
z = keras.layers.GlobalAveragePooling2D()(z)
keras_model = keras.models.Model([data1, data2], z)
verify_keras_frontend(keras_model)
def test_forward_multi_outputs(self, keras):
data = keras.layers.Input(shape=(32, 32, 3))
x = keras.layers.Conv2D(8, (3, 3), padding="same")(data)
x = keras.layers.GlobalAveragePooling2D()(x)
y = keras.layers.Conv2D(8, (3, 3), padding="same")(data)
y = keras.layers.GlobalAveragePooling2D()(y)
keras_model = keras.models.Model(data, [x, y])
verify_keras_frontend(keras_model)
def test_forward_reuse_layers(self, keras):
# reuse conv2d
data = keras.layers.Input(shape=(32, 32, 3))
conv2d = keras.layers.Conv2D(8, (3, 3), padding="same")
x = conv2d(data)
y = conv2d(data)
z = keras.layers.Add()([x, y])
z = keras.layers.GlobalAveragePooling2D()(z)
keras_model = keras.models.Model(data, z)
verify_keras_frontend(keras_model)
# reuse add
data = keras.layers.Input(shape=(32, 32, 3))
x = keras.layers.Conv2D(8, (3, 3), padding="same")(data)
add = keras.layers.Add()
x = add([x, x])
x = add([x, x])
z = keras.layers.GlobalAveragePooling2D()(x)
keras_model = keras.models.Model(data, z)
verify_keras_frontend(keras_model)
def test_forward_rnn(self,keras):
data = keras.layers.Input(shape=(1, 32))
rnn_funcs = [keras.layers.LSTM(units=16, return_state=False,
recurrent_activation='sigmoid', activation='tanh'),
keras.layers.SimpleRNN(units=16, return_state=False,
activation='tanh'),
keras.layers.GRU(units=16, return_state=False,
recurrent_activation='sigmoid', activation='tanh')]
for rnn_func in rnn_funcs:
x = rnn_func(data)
keras_model = keras.models.Model(data, x)
verify_keras_frontend(keras_model, need_transpose=False)
def test_forward_vgg16(self, keras, layout='NCHW'):
keras_model = keras.applications.VGG16(include_top=True, weights='imagenet',
input_shape=(224, 224, 3), classes=1000)
verify_keras_frontend(keras_model, layout=layout)
def test_forward_xception(self, keras, layout='NCHW'):
keras_model = keras.applications.Xception(include_top=True, weights='imagenet',
input_shape=(299, 299, 3), classes=1000)
verify_keras_frontend(keras_model, layout=layout)
def test_forward_resnet50(self, keras, layout='NCHW'):
keras_model = keras.applications.ResNet50(include_top=True, weights='imagenet',
input_shape=(224, 224, 3), classes=1000)
verify_keras_frontend(keras_model, layout=layout)
def test_forward_mobilenet(self, keras, layout='NCHW'):
keras_model = keras.applications.MobileNet(include_top=True, weights='imagenet',
input_shape=(224, 224, 3), classes=1000)
verify_keras_frontend(keras_model, layout=layout)
if __name__ == '__main__':
for k in [keras, tf_keras]:
sut = TestKeras()
sut.test_forward_merge_dot(keras=k)
sut.test_forward_merge(keras=k)
sut.test_forward_activations(keras=k)
sut.test_forward_dense(keras=k)
sut.test_forward_permute(keras=k)
sut.test_forward_sequential(keras=k)
sut.test_forward_pool(keras=k)
sut.test_forward_conv(keras=k)
sut.test_forward_batch_norm(keras=k)
sut.test_forward_upsample(keras=k, interpolation='nearest')
sut.test_forward_upsample(keras=k, interpolation='bilinear')
sut.test_forward_reshape(keras=k)
sut.test_forward_crop(keras=k)
sut.test_forward_multi_inputs(keras=k)
sut.test_forward_multi_outputs(keras=k)
sut.test_forward_reuse_layers(keras=k)
sut.test_forward_rnn(keras=k)
sut.test_forward_vgg16(keras=k)
sut.test_forward_vgg16(keras=k, layout='NHWC')
sut.test_forward_xception(keras=k)
sut.test_forward_resnet50(keras=k)
sut.test_forward_resnet50(keras=k, layout='NHWC')
sut.test_forward_mobilenet(keras=k)
sut.test_forward_mobilenet(keras=k, layout='NHWC')
| [
"tensorflow.executing_eagerly",
"tensorflow.config.experimental.set_memory_growth",
"tensorflow.ConfigProto",
"tensorflow.config.list_physical_devices",
"numpy.random.rand",
"tensorflow.Session",
"numpy.random.uniform"
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hhy37/tensor2tensor | b4094d065fa0ae8842cd667fb0e5a2c652407c9c | # coding=utf-8
# Copyright 2018 The Tensor2Tensor Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tests for layers in latent variable models."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import functools
import six
from tensor2tensor.layers import common_image_attention as cia
from tensor2tensor.layers import discretization
from tensor2tensor.layers import latent_layers
from tensor2tensor.models import transformer
import tensorflow as tf
def imagetransformer_latent_tiny():
"""Tiny set of hparams for a latent image model."""
hparams = transformer.transformer_small()
hparams.batch_size = 2
hparams.num_hidden_layers = 3
hparams.hidden_size = 16
hparams.filter_size = 32
hparams.compress_filter_size = 64
hparams.ffn_layer = "conv_hidden_relu"
hparams.layer_prepostprocess_dropout = 0.2
hparams.layer_preprocess_sequence = "none"
hparams.layer_postprocess_sequence = "dan"
hparams.dropout = 0.3
hparams.pos = "timing"
hparams.num_encoder_layers = 1
hparams.num_decoder_layers = 2
hparams.use_pad_remover = False
hparams.add_hparam("logit_normalization", True)
hparams.add_hparam("bottleneck_kind", "dvq")
hparams.add_hparam("bottleneck_bits", 4)
hparams.add_hparam("num_residuals", 1)
hparams.add_hparam("use_gold_targets", False)
hparams.add_hparam("do_compress_attend", False)
hparams.add_hparam("do_decompress_attend", False)
hparams.add_hparam("drop_inputs", False)
hparams.add_hparam("num_compress_steps", 2)
hparams.add_hparam("startup_steps", 10000)
hparams.add_hparam("mask_startup_steps", 50000)
hparams.add_hparam("latent_dropout", 0.0)
hparams.add_hparam("decode_autoregressive", False)
hparams.add_hparam("vq_beta", 0.25)
hparams.add_hparam("vq_epsilon", 1e-5)
hparams.add_hparam("vq_decay", 0.999)
hparams.add_hparam("ema", False)
hparams.add_hparam("soft_em", True)
hparams.add_hparam("num_samples", 1)
hparams.add_hparam("num_latent_layers", 2)
hparams.add_hparam("num_res_layers", 2)
hparams.add_hparam("res_kernel_size", 3)
hparams.add_hparam("num_blocks", 1)
hparams.add_hparam("reshape_method", "slice")
hparams.add_hparam("shared_rel", False)
hparams.add_hparam("block_size", 1)
hparams.add_hparam("kernel_size", 3)
hparams.add_hparam("img_len", 8)
hparams.add_hparam("num_channels", 1)
hparams.add_hparam("local_and_global_att", False)
hparams.add_hparam("block_length", 32)
hparams.add_hparam("block_width", 128)
hparams.add_hparam("dec_attention_type", cia.AttentionType.LOCAL_1D)
hparams.add_hparam("latent_attention_type", cia.AttentionType.GLOBAL)
hparams.add_hparam("block_raster_scan", False)
hparams.add_hparam("num_latents", 1)
hparams.add_hparam("q_filter_width", 1)
hparams.add_hparam("kv_filter_width", 1)
return hparams
class LatentLayersTest(tf.test.TestCase):
@tf.contrib.eager.run_test_in_graph_and_eager_modes()
def testTransformerAutoencoder(self):
hparams = imagetransformer_latent_tiny()
hparams.mode = tf.estimator.ModeKeys.TRAIN
block_dim = int(hparams.hidden_size // hparams.num_blocks)
block_v_size = 2**(hparams.bottleneck_bits /
(hparams.num_residuals * hparams.num_blocks))
block_v_size = int(block_v_size)
means = tf.get_variable(
name="means",
shape=[hparams.num_residuals,
hparams.num_blocks,
block_v_size,
block_dim],
initializer=tf.uniform_unit_scaling_initializer())
hparams.bottleneck = functools.partial(
discretization.discrete_bottleneck,
hidden_size=hparams.hidden_size,
z_size=hparams.bottleneck_bits,
filter_size=hparams.filter_size,
startup_steps=hparams.startup_steps,
bottleneck_kind=hparams.bottleneck_kind,
num_blocks=hparams.num_blocks,
num_residuals=hparams.num_residuals,
reshape_method=hparams.reshape_method,
beta=hparams.vq_beta,
decay=hparams.vq_decay,
soft_em=hparams.soft_em,
num_samples=hparams.num_samples,
epsilon=hparams.vq_epsilon,
ema=hparams.ema,
means=means)
inputs = None
batch_size = hparams.batch_size
targets = tf.random_uniform([batch_size,
hparams.img_len,
hparams.img_len,
hparams.hidden_size],
minval=-1., maxval=1.)
target_space_id = None
tf.train.create_global_step()
decoder_output, losses, cache = latent_layers.transformer_autoencoder(
inputs, targets, target_space_id, hparams)
self.assertEqual(set(six.iterkeys(losses)),
{"extra", "extra_loss", "latent_pred"})
self.evaluate(tf.global_variables_initializer())
decoder_output_, extra_loss_, latent_pred_ = self.evaluate(
[decoder_output, losses["extra_loss"], losses["latent_pred"]])
self.assertEqual(decoder_output_.shape, (batch_size,
hparams.img_len,
hparams.img_len,
hparams.hidden_size))
self.assertEqual(extra_loss_.shape, (batch_size,))
self.assertEqual(latent_pred_.shape, (batch_size,))
self.assertAllGreaterEqual(extra_loss_, 0.)
self.assertAllGreaterEqual(latent_pred_, 0.)
self.assertEqual(cache, None)
if __name__ == "__main__":
tf.test.main()
| [
"tensorflow.contrib.eager.run_test_in_graph_and_eager_modes",
"tensorflow.test.main",
"tensorflow.global_variables_initializer",
"tensorflow.uniform_unit_scaling_initializer",
"tensorflow.train.create_global_step",
"tensorflow.random_uniform"
] | tensor2tensor/layers/latent_layers_test.py | [(34, 'tensor2tensor.models.transformer.transformer_small', 'transformer.transformer_small', ([], {}), False, 'from tensor2tensor.models import transformer\n'), (92, 'tensorflow.contrib.eager.run_test_in_graph_and_eager_modes', 'tf.contrib.eager.run_test_in_graph_and_eager_modes', ([], {}), True, 'import tensorflow as tf\n'), (155, 'tensorflow.test.main', 'tf.test.main', ([], {}), True, 'import tensorflow as tf\n'), (107, 'functools.partial', 'functools.partial', (['discretization.discrete_bottleneck'], {'hidden_size': 'hparams.hidden_size', 'z_size': 'hparams.bottleneck_bits', 'filter_size': 'hparams.filter_size', 'startup_steps': 'hparams.startup_steps', 'bottleneck_kind': 'hparams.bottleneck_kind', 'num_blocks': 'hparams.num_blocks', 'num_residuals': 'hparams.num_residuals', 'reshape_method': 'hparams.reshape_method', 'beta': 'hparams.vq_beta', 'decay': 'hparams.vq_decay', 'soft_em': 'hparams.soft_em', 'num_samples': 'hparams.num_samples', 'epsilon': 'hparams.vq_epsilon', 'ema': 'hparams.ema', 'means': 'means'}), False, 'import functools\n'), (127, 'tensorflow.random_uniform', 'tf.random_uniform', (['[batch_size, hparams.img_len, hparams.img_len, hparams.hidden_size]'], {'minval': '(-1.0)', 'maxval': '(1.0)'}), True, 'import tensorflow as tf\n'), (134, 'tensorflow.train.create_global_step', 'tf.train.create_global_step', ([], {}), True, 'import tensorflow as tf\n'), (135, 'tensor2tensor.layers.latent_layers.transformer_autoencoder', 'latent_layers.transformer_autoencoder', (['inputs', 'targets', 'target_space_id', 'hparams'], {}), False, 'from tensor2tensor.layers import latent_layers\n'), (141, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (106, 'tensorflow.uniform_unit_scaling_initializer', 'tf.uniform_unit_scaling_initializer', ([], {}), True, 'import tensorflow as tf\n'), (138, 'six.iterkeys', 'six.iterkeys', (['losses'], {}), False, 'import six\n')] |
wladimir-crypto/TensowFlow-Food | c5e115f96d3fca04fe256e9b2f3075f77e083a75 | # Copyright 2020 Google Research. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""A demo script to show to train a segmentation model."""
from absl import app
from absl import logging
import tensorflow as tf
import tensorflow_datasets as tfds
from tensorflow_examples.lite.model_maker.third_party.efficientdet import hparams_config
from tensorflow_examples.lite.model_maker.third_party.efficientdet.keras import efficientdet_keras
def create_mask(pred_mask):
pred_mask = tf.argmax(pred_mask, axis=-1)
pred_mask = pred_mask[..., tf.newaxis]
return pred_mask[0]
dataset, info = tfds.load('oxford_iiit_pet:3.*.*', with_info=True)
def normalize(input_image, input_mask):
input_image = tf.cast(input_image, tf.float32) / 255.0
input_mask -= 1
return input_image, input_mask
def load_image_train(datapoint):
"""Load images for training."""
input_image = tf.image.resize(datapoint['image'], (512, 512))
input_mask = tf.image.resize(datapoint['segmentation_mask'], (128, 128))
if tf.random.uniform(()) > 0.5:
input_image = tf.image.flip_left_right(input_image)
input_mask = tf.image.flip_left_right(input_mask)
input_image, input_mask = normalize(input_image, input_mask)
return input_image, input_mask
def load_image_test(datapoint):
input_image = tf.image.resize(datapoint['image'], (512, 512))
input_mask = tf.image.resize(datapoint['segmentation_mask'], (128, 128))
input_image, input_mask = normalize(input_image, input_mask)
return input_image, input_mask
def main(_):
train_examples = info.splits['train'].num_examples
batch_size = 8
steps_per_epoch = train_examples // batch_size
train = dataset['train'].map(
load_image_train, num_parallel_calls=tf.data.experimental.AUTOTUNE)
test = dataset['test'].map(load_image_test)
train_dataset = train.cache().shuffle(1000).batch(batch_size).repeat()
train_dataset = train_dataset.prefetch(
buffer_size=tf.data.experimental.AUTOTUNE)
test_dataset = test.batch(batch_size)
config = hparams_config.get_efficientdet_config('efficientdet-d0')
config.heads = ['segmentation']
model = efficientdet_keras.EfficientDetNet(config=config)
model.build((1, 512, 512, 3))
model.compile(
optimizer='adam',
loss=tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True),
metrics=['accuracy'])
val_subsplits = 5
val_steps = info.splits['test'].num_examples // batch_size // val_subsplits
model.fit(
train_dataset,
epochs=20,
steps_per_epoch=steps_per_epoch,
validation_steps=val_steps,
validation_data=test_dataset,
callbacks=[])
model.save_weights('./test/segmentation')
print(create_mask(model(tf.ones((1, 512, 512, 3)), False)))
if __name__ == '__main__':
logging.set_verbosity(logging.WARNING)
app.run(main)
| [
"tensorflow.keras.losses.SparseCategoricalCrossentropy",
"tensorflow.cast",
"tensorflow.random.uniform",
"tensorflow.ones",
"tensorflow.image.flip_left_right",
"tensorflow.image.resize",
"tensorflow.argmax"
] | tensorflow_examples/lite/model_maker/third_party/efficientdet/keras/segmentation.py | [(31, 'tensorflow_datasets.load', 'tfds.load', (['"""oxford_iiit_pet:3.*.*"""'], {'with_info': '(True)'}), True, 'import tensorflow_datasets as tfds\n'), (26, 'tensorflow.argmax', 'tf.argmax', (['pred_mask'], {'axis': '(-1)'}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.image.resize', 'tf.image.resize', (["datapoint['image']", '(512, 512)'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.image.resize', 'tf.image.resize', (["datapoint['segmentation_mask']", '(128, 128)'], {}), True, 'import tensorflow as tf\n'), (55, 'tensorflow.image.resize', 'tf.image.resize', (["datapoint['image']", '(512, 512)'], {}), True, 'import tensorflow as tf\n'), (56, 'tensorflow.image.resize', 'tf.image.resize', (["datapoint['segmentation_mask']", '(128, 128)'], {}), True, 'import tensorflow as tf\n'), (76, 'tensorflow_examples.lite.model_maker.third_party.efficientdet.hparams_config.get_efficientdet_config', 'hparams_config.get_efficientdet_config', (['"""efficientdet-d0"""'], {}), False, 'from tensorflow_examples.lite.model_maker.third_party.efficientdet import hparams_config\n'), (78, 'tensorflow_examples.lite.model_maker.third_party.efficientdet.keras.efficientdet_keras.EfficientDetNet', 'efficientdet_keras.EfficientDetNet', ([], {'config': 'config'}), False, 'from tensorflow_examples.lite.model_maker.third_party.efficientdet.keras import efficientdet_keras\n'), (101, 'absl.logging.set_verbosity', 'logging.set_verbosity', (['logging.WARNING'], {}), False, 'from absl import logging\n'), (102, 'absl.app.run', 'app.run', (['main'], {}), False, 'from absl import app\n'), (35, 'tensorflow.cast', 'tf.cast', (['input_image', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (45, 'tensorflow.random.uniform', 'tf.random.uniform', (['()'], {}), True, 'import tensorflow as tf\n'), (46, 'tensorflow.image.flip_left_right', 'tf.image.flip_left_right', (['input_image'], {}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.image.flip_left_right', 'tf.image.flip_left_right', (['input_mask'], {}), True, 'import tensorflow as tf\n'), (82, 'tensorflow.keras.losses.SparseCategoricalCrossentropy', 'tf.keras.losses.SparseCategoricalCrossentropy', ([], {'from_logits': '(True)'}), True, 'import tensorflow as tf\n'), (97, 'tensorflow.ones', 'tf.ones', (['(1, 512, 512, 3)'], {}), True, 'import tensorflow as tf\n')] |
varunjha089/tensorflow_cookbook | c1fa5051c860ecb6de875db975465ced06f43ba6 | # Working with Bag of Words
#---------------------------------------
#
# In this example, we will download and preprocess the ham/spam
# text data. We will then use a one-hot-encoding to make a
# bag of words set of features to use in logistic regression.
#
# We will use these one-hot-vectors for logistic regression to
# predict if a text is spam or ham.
import tensorflow as tf
import matplotlib.pyplot as plt
import os
import numpy as np
import csv
import string
import requests
import io
from zipfile import ZipFile
from tensorflow.contrib import learn
from tensorflow.python.framework import ops
ops.reset_default_graph()
# Start a graph session
sess = tf.Session()
# Check if data was downloaded, otherwise download it and save for future use
save_file_name = os.path.join('temp','temp_spam_data.csv')
# Create directory if it doesn't exist
if not os.path.exists('temp'):
os.makedirs('temp')
if os.path.isfile(save_file_name):
text_data = []
with open(save_file_name, 'r') as temp_output_file:
reader = csv.reader(temp_output_file)
for row in reader:
text_data.append(row)
else:
zip_url = 'http://archive.ics.uci.edu/ml/machine-learning-databases/00228/smsspamcollection.zip'
r = requests.get(zip_url)
z = ZipFile(io.BytesIO(r.content))
file = z.read('SMSSpamCollection')
# Format Data
text_data = file.decode()
text_data = text_data.encode('ascii',errors='ignore')
text_data = text_data.decode().split('\n')
text_data = [x.split('\t') for x in text_data if len(x)>=1]
# And write to csv
with open(save_file_name, 'w') as temp_output_file:
writer = csv.writer(temp_output_file)
writer.writerows(text_data)
texts = [x[1] for x in text_data]
target = [x[0] for x in text_data]
# Relabel 'spam' as 1, 'ham' as 0
target = [1 if x=='spam' else 0 for x in target]
# Normalize text
# Lower case
texts = [x.lower() for x in texts]
# Remove punctuation
texts = [''.join(c for c in x if c not in string.punctuation) for x in texts]
# Remove numbers
texts = [''.join(c for c in x if c not in '0123456789') for x in texts]
# Trim extra whitespace
texts = [' '.join(x.split()) for x in texts]
# Plot histogram of text lengths
text_lengths = [len(x.split()) for x in texts]
text_lengths = [x for x in text_lengths if x < 50]
plt.hist(text_lengths, bins=25)
plt.title('Histogram of # of Words in Texts')
# Choose max text word length at 25
sentence_size = 25
min_word_freq = 3
# Setup vocabulary processor
vocab_processor = learn.preprocessing.VocabularyProcessor(sentence_size, min_frequency=min_word_freq)
# Have to fit transform to get length of unique words.
vocab_processor.transform(texts)
embedding_size = len([x for x in vocab_processor.transform(texts)])
# Split up data set into train/test
train_indices = np.random.choice(len(texts), round(len(texts)*0.8), replace=False)
test_indices = np.array(list(set(range(len(texts))) - set(train_indices)))
texts_train = [x for ix, x in enumerate(texts) if ix in train_indices]
texts_test = [x for ix, x in enumerate(texts) if ix in test_indices]
target_train = [x for ix, x in enumerate(target) if ix in train_indices]
target_test = [x for ix, x in enumerate(target) if ix in test_indices]
# Setup Index Matrix for one-hot-encoding
identity_mat = tf.diag(tf.ones(shape=[embedding_size]))
# Create variables for logistic regression
A = tf.Variable(tf.random_normal(shape=[embedding_size,1]))
b = tf.Variable(tf.random_normal(shape=[1,1]))
# Initialize placeholders
x_data = tf.placeholder(shape=[sentence_size], dtype=tf.int32)
y_target = tf.placeholder(shape=[1, 1], dtype=tf.float32)
# Text-Vocab Embedding
x_embed = tf.nn.embedding_lookup(identity_mat, x_data)
x_col_sums = tf.reduce_sum(x_embed, 0)
# Declare model operations
x_col_sums_2D = tf.expand_dims(x_col_sums, 0)
model_output = tf.add(tf.matmul(x_col_sums_2D, A), b)
# Declare loss function (Cross Entropy loss)
loss = tf.reduce_mean(tf.nn.sigmoid_cross_entropy_with_logits(logits=model_output, labels=y_target))
# Prediction operation
prediction = tf.sigmoid(model_output)
# Declare optimizer
my_opt = tf.train.GradientDescentOptimizer(0.001)
train_step = my_opt.minimize(loss)
# Intitialize Variables
init = tf.global_variables_initializer()
sess.run(init)
# Start Logistic Regression
print('Starting Training Over {} Sentences.'.format(len(texts_train)))
loss_vec = []
train_acc_all = []
train_acc_avg = []
for ix, t in enumerate(vocab_processor.fit_transform(texts_train)):
y_data = [[target_train[ix]]]
sess.run(train_step, feed_dict={x_data: t, y_target: y_data})
temp_loss = sess.run(loss, feed_dict={x_data: t, y_target: y_data})
loss_vec.append(temp_loss)
if (ix+1)%10==0:
print('Training Observation #' + str(ix+1) + ': Loss = ' + str(temp_loss))
# Keep trailing average of past 50 observations accuracy
# Get prediction of single observation
[[temp_pred]] = sess.run(prediction, feed_dict={x_data:t, y_target:y_data})
# Get True/False if prediction is accurate
train_acc_temp = target_train[ix]==np.round(temp_pred)
train_acc_all.append(train_acc_temp)
if len(train_acc_all) >= 50:
train_acc_avg.append(np.mean(train_acc_all[-50:]))
# Get test set accuracy
print('Getting Test Set Accuracy For {} Sentences.'.format(len(texts_test)))
test_acc_all = []
for ix, t in enumerate(vocab_processor.fit_transform(texts_test)):
y_data = [[target_test[ix]]]
if (ix+1)%50==0:
print('Test Observation #' + str(ix+1))
# Keep trailing average of past 50 observations accuracy
# Get prediction of single observation
[[temp_pred]] = sess.run(prediction, feed_dict={x_data:t, y_target:y_data})
# Get True/False if prediction is accurate
test_acc_temp = target_test[ix]==np.round(temp_pred)
test_acc_all.append(test_acc_temp)
print('\nOverall Test Accuracy: {}'.format(np.mean(test_acc_all)))
# Plot training accuracy over time
plt.plot(range(len(train_acc_avg)), train_acc_avg, 'k-', label='Train Accuracy')
plt.title('Avg Training Acc Over Past 50 Generations')
plt.xlabel('Generation')
plt.ylabel('Training Accuracy')
plt.show() | [
"tensorflow.reduce_sum",
"tensorflow.nn.sigmoid_cross_entropy_with_logits",
"numpy.round",
"numpy.mean",
"tensorflow.Session",
"tensorflow.python.framework.ops.reset_default_graph",
"tensorflow.matmul",
"matplotlib.pyplot.title",
"tensorflow.placeholder",
"tensorflow.global_variables_initializer",
"tensorflow.train.GradientDescentOptimizer",
"matplotlib.pyplot.show",
"tensorflow.nn.embedding_lookup",
"matplotlib.pyplot.hist",
"matplotlib.pyplot.ylabel",
"tensorflow.sigmoid",
"tensorflow.expand_dims",
"tensorflow.ones",
"matplotlib.pyplot.xlabel",
"tensorflow.contrib.learn.preprocessing.VocabularyProcessor",
"tensorflow.random_normal"
] | 07_Natural_Language_Processing/02_Working_with_Bag_of_Words/02_bag_of_words.py | [(22, 'tensorflow.python.framework.ops.reset_default_graph', 'ops.reset_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (25, 'tensorflow.Session', 'tf.Session', ([], {}), True, 'import tensorflow as tf\n'), (28, 'os.path.join', 'os.path.join', (['"""temp"""', '"""temp_spam_data.csv"""'], {}), False, 'import os\n'), (34, 'os.path.isfile', 'os.path.isfile', (['save_file_name'], {}), False, 'import os\n'), (78, 'matplotlib.pyplot.hist', 'plt.hist', (['text_lengths'], {'bins': '(25)'}), True, 'import matplotlib.pyplot as plt\n'), (79, 'matplotlib.pyplot.title', 'plt.title', (['"""Histogram of # of Words in Texts"""'], {}), True, 'import matplotlib.pyplot as plt\n'), (86, 'tensorflow.contrib.learn.preprocessing.VocabularyProcessor', 'learn.preprocessing.VocabularyProcessor', (['sentence_size'], {'min_frequency': 'min_word_freq'}), False, 'from tensorflow.contrib import learn\n'), (108, 'tensorflow.placeholder', 'tf.placeholder', ([], {'shape': '[sentence_size]', 'dtype': 'tf.int32'}), True, 'import tensorflow as tf\n'), (109, 'tensorflow.placeholder', 'tf.placeholder', ([], {'shape': '[1, 1]', 'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (112, 'tensorflow.nn.embedding_lookup', 'tf.nn.embedding_lookup', (['identity_mat', 'x_data'], {}), True, 'import tensorflow as tf\n'), (113, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['x_embed', '(0)'], {}), True, 'import tensorflow as tf\n'), (116, 'tensorflow.expand_dims', 'tf.expand_dims', (['x_col_sums', '(0)'], {}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.sigmoid', 'tf.sigmoid', (['model_output'], {}), True, 'import tensorflow as tf\n'), (126, 'tensorflow.train.GradientDescentOptimizer', 'tf.train.GradientDescentOptimizer', (['(0.001)'], {}), True, 'import tensorflow as tf\n'), (130, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (178, 'matplotlib.pyplot.title', 'plt.title', (['"""Avg Training Acc Over Past 50 Generations"""'], {}), True, 'import matplotlib.pyplot as plt\n'), (179, 'matplotlib.pyplot.xlabel', 'plt.xlabel', (['"""Generation"""'], {}), True, 'import matplotlib.pyplot as plt\n'), (180, 'matplotlib.pyplot.ylabel', 'plt.ylabel', (['"""Training Accuracy"""'], {}), True, 'import matplotlib.pyplot as plt\n'), (181, 'matplotlib.pyplot.show', 'plt.show', ([], {}), True, 'import matplotlib.pyplot as plt\n'), (31, 'os.path.exists', 'os.path.exists', (['"""temp"""'], {}), False, 'import os\n'), (32, 'os.makedirs', 'os.makedirs', (['"""temp"""'], {}), False, 'import os\n'), (42, 'requests.get', 'requests.get', (['zip_url'], {}), False, 'import requests\n'), (101, 'tensorflow.ones', 'tf.ones', ([], {'shape': '[embedding_size]'}), True, 'import tensorflow as tf\n'), (104, 'tensorflow.random_normal', 'tf.random_normal', ([], {'shape': '[embedding_size, 1]'}), True, 'import tensorflow as tf\n'), (105, 'tensorflow.random_normal', 'tf.random_normal', ([], {'shape': '[1, 1]'}), True, 'import tensorflow as tf\n'), (117, 'tensorflow.matmul', 'tf.matmul', (['x_col_sums_2D', 'A'], {}), True, 'import tensorflow as tf\n'), (120, 'tensorflow.nn.sigmoid_cross_entropy_with_logits', 'tf.nn.sigmoid_cross_entropy_with_logits', ([], {'logits': 'model_output', 'labels': 'y_target'}), True, 'import tensorflow as tf\n'), (37, 'csv.reader', 'csv.reader', (['temp_output_file'], {}), False, 'import csv\n'), (43, 'io.BytesIO', 'io.BytesIO', (['r.content'], {}), False, 'import io\n'), (53, 'csv.writer', 'csv.writer', (['temp_output_file'], {}), False, 'import csv\n'), (153, 'numpy.round', 'np.round', (['temp_pred'], {}), True, 'import numpy as np\n'), (171, 'numpy.round', 'np.round', (['temp_pred'], {}), True, 'import numpy as np\n'), (174, 'numpy.mean', 'np.mean', (['test_acc_all'], {}), True, 'import numpy as np\n'), (156, 'numpy.mean', 'np.mean', (['train_acc_all[-50:]'], {}), True, 'import numpy as np\n')] |
51616/split | 58b6efa8ab2c24e85c0a14922ee6a2a83aaa7e19 | import numpy as np
import tensorflow as tf
import tensorflow_probability as tfp
import os
os.environ['TF_CPP_MIN_LOG_LEVEL'] = '2'
width = height = 32
channel = 3
patch_size_x = 8 ;patch_size_y = 8
class Augmentator(object):
def __init__(self,type,size=1,mean=0,std=1):
self.size = size
if type=='scramble':
self.augment = self.scramble
elif type=='mix_scramble':
self.augment = self.mix_scramble
elif type=='blur':
self.augment = self.gaussian_blur
self.pointwise_filter = tf.eye(3, batch_shape=[1, 1])
elif type=='high_low_pass':
self.augment = self.high_low_pass
self.kernel = self.gaussian_kernel(size,mean,std)
self.kernel = tf.tile(self.kernel[:, :, tf.newaxis, tf.newaxis], [1, 1, 3, 1])
self.pointwise_filter = tf.eye(3, batch_shape=[1, 1])
self.paddings = [[size,size],[size,size],[0,0]]
elif type=='no_op':
self.augment = self.no_op
def gaussian_kernel(self,size,mean,std):
"""Makes 2D gaussian Kernel for convolution."""
d = tfp.distributions.Normal(mean, std)
vals = d.prob(tf.range(start = -size, limit = size + 1, dtype = tf.float32))
gauss_kernel = tf.einsum('i,j->ij',vals,vals)
return gauss_kernel / tf.reduce_sum(gauss_kernel)
def get_random_patch_size(self):
return np.random.choice([1,2,4,8])
def scramble(self,x):
# assume square patch
n_row,n_col,n_channel = x.shape
n_patch = n_row*n_col // (self.size**2)
patches = tf.image.extract_patches(tf.expand_dims(x,0),sizes=[1,self.size,self.size,1],strides=[1,self.size,self.size,1],rates=[1, 1, 1, 1],padding='VALID')
patches = tf.reshape(patches,[n_patch,self.size,self.size,n_channel])
patches = tf.random.shuffle(patches)
# rand_idx = tf.reshape(tf.random.shuffle(tf.range(0,n_patch)),[n_patch])
# patches = tf.gather(patches, rand_idx, axis=0)
rows = tf.split(patches,n_col//self.size,axis=0)
rows = [tf.concat(tf.unstack(x),axis=1) for x in rows]
x_aug = tf.concat(rows,axis=0)
x_aug = tf.convert_to_tensor(x_aug)
return tf.concat([x, x_aug],axis=2)
def mix_scramble(self,x):
# assume square patch
# sizes = tf.convert_to_tensor([1,2,4,8])
# idx = tf.random.categorical([tf.ones_like(sizes)], 1)
# print(idx)
# patch_size = int(sizes[idx[0][0]])
patch_size = self.get_random_patch_size()
print('Patch size:',patch_size)
window = [1,patch_size,patch_size,1]
print('Window:',window)
n_row,n_col,n_channel = x.shape
n_patch = n_row*n_col // (patch_size**2)
patches = tf.image.extract_patches(tf.expand_dims(x,0),sizes=window,strides=window,rates=[1, 1, 1, 1],padding='VALID')
patches = tf.reshape(patches,[n_patch,patch_size,patch_size,n_channel])
patches = tf.random.shuffle(patches)
rows = tf.split(patches,n_col//patch_size,axis=0)
rows = [tf.concat(tf.unstack(x),axis=1) for x in rows]
x_aug = tf.concat(rows,axis=0)
x_aug = tf.convert_to_tensor(x_aug)
return tf.concat([x, x_aug],axis=2)
def gaussian_blur(self,x):
#create random gaussian blur filter
mean = 0
std = tf.random.uniform(shape=[],minval=5,maxval=10,dtype=tf.float32) # std [5-10]
size = tf.random.uniform(shape=[],minval=3,maxval=7,dtype=tf.int32) # size [7-15]
self.kernel = self.gaussian_kernel(size,mean,std)
self.kernel = tf.tile(self.kernel[:, :, tf.newaxis, tf.newaxis], [1, 1, 3, 1])
self.paddings = tf.convert_to_tensor([[size,size],[size,size],[0,0]])
x_aug = tf.nn.separable_conv2d(tf.expand_dims(tf.pad(x,self.paddings,'SYMMETRIC'), 0), self.kernel, self.pointwise_filter,strides=[1, 1, 1, 1], padding='VALID')
x_aug = tf.squeeze(x_aug)
return tf.concat([x, x_aug],axis=2)
def high_low_pass(self,x):
x_low = tf.nn.separable_conv2d(tf.expand_dims(tf.pad(x,self.paddings,'SYMMETRIC'), 0), self.kernel, self.pointwise_filter,strides=[1, 1, 1, 1], padding='VALID')
x_low = tf.squeeze(x_low)
x_high = x - x_low
return tf.concat([x, x_high, x_low],axis=2)
def no_op(self,x):
return x
| [
"tensorflow.convert_to_tensor",
"tensorflow.concat",
"tensorflow.range",
"numpy.random.choice",
"tensorflow.unstack",
"tensorflow.reduce_sum",
"tensorflow.reshape",
"tensorflow.random.uniform",
"tensorflow.squeeze",
"tensorflow.expand_dims",
"tensorflow.einsum",
"tensorflow.eye",
"tensorflow.random.shuffle",
"tensorflow.pad",
"tensorflow.split",
"tensorflow.tile"
] | augmentation.py | [(35, 'tensorflow_probability.distributions.Normal', 'tfp.distributions.Normal', (['mean', 'std'], {}), True, 'import tensorflow_probability as tfp\n'), (37, 'tensorflow.einsum', 'tf.einsum', (['"""i,j->ij"""', 'vals', 'vals'], {}), True, 'import tensorflow as tf\n'), (41, 'numpy.random.choice', 'np.random.choice', (['[1, 2, 4, 8]'], {}), True, 'import numpy as np\n'), (48, 'tensorflow.reshape', 'tf.reshape', (['patches', '[n_patch, self.size, self.size, n_channel]'], {}), True, 'import tensorflow as tf\n'), (49, 'tensorflow.random.shuffle', 'tf.random.shuffle', (['patches'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.split', 'tf.split', (['patches', '(n_col // self.size)'], {'axis': '(0)'}), True, 'import tensorflow as tf\n'), (54, 'tensorflow.concat', 'tf.concat', (['rows'], {'axis': '(0)'}), True, 'import tensorflow as tf\n'), (56, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['x_aug'], {}), True, 'import tensorflow as tf\n'), (57, 'tensorflow.concat', 'tf.concat', (['[x, x_aug]'], {'axis': '(2)'}), True, 'import tensorflow as tf\n'), (73, 'tensorflow.reshape', 'tf.reshape', (['patches', '[n_patch, patch_size, patch_size, n_channel]'], {}), True, 'import tensorflow as tf\n'), (74, 'tensorflow.random.shuffle', 'tf.random.shuffle', (['patches'], {}), True, 'import tensorflow as tf\n'), (75, 'tensorflow.split', 'tf.split', (['patches', '(n_col // patch_size)'], {'axis': '(0)'}), True, 'import tensorflow as tf\n'), (77, 'tensorflow.concat', 'tf.concat', (['rows'], {'axis': '(0)'}), True, 'import tensorflow as tf\n'), (79, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['x_aug'], {}), True, 'import tensorflow as tf\n'), (81, 'tensorflow.concat', 'tf.concat', (['[x, x_aug]'], {'axis': '(2)'}), True, 'import tensorflow as tf\n'), (86, 'tensorflow.random.uniform', 'tf.random.uniform', ([], {'shape': '[]', 'minval': '(5)', 'maxval': '(10)', 'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (87, 'tensorflow.random.uniform', 'tf.random.uniform', ([], {'shape': '[]', 'minval': '(3)', 'maxval': '(7)', 'dtype': 'tf.int32'}), True, 'import tensorflow as tf\n'), (90, 'tensorflow.tile', 'tf.tile', (['self.kernel[:, :, (tf.newaxis), (tf.newaxis)]', '[1, 1, 3, 1]'], {}), True, 'import tensorflow as tf\n'), (91, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['[[size, size], [size, size], [0, 0]]'], {}), True, 'import tensorflow as tf\n'), (93, 'tensorflow.squeeze', 'tf.squeeze', (['x_aug'], {}), True, 'import tensorflow as tf\n'), (94, 'tensorflow.concat', 'tf.concat', (['[x, x_aug]'], {'axis': '(2)'}), True, 'import tensorflow as tf\n'), (99, 'tensorflow.squeeze', 'tf.squeeze', (['x_low'], {}), True, 'import tensorflow as tf\n'), (101, 'tensorflow.concat', 'tf.concat', (['[x, x_high, x_low]'], {'axis': '(2)'}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.range', 'tf.range', ([], {'start': '(-size)', 'limit': '(size + 1)', 'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['gauss_kernel'], {}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.expand_dims', 'tf.expand_dims', (['x', '(0)'], {}), True, 'import tensorflow as tf\n'), (72, 'tensorflow.expand_dims', 'tf.expand_dims', (['x', '(0)'], {}), True, 'import tensorflow as tf\n'), (53, 'tensorflow.unstack', 'tf.unstack', (['x'], {}), True, 'import tensorflow as tf\n'), (76, 'tensorflow.unstack', 'tf.unstack', (['x'], {}), True, 'import tensorflow as tf\n'), (92, 'tensorflow.pad', 'tf.pad', (['x', 'self.paddings', '"""SYMMETRIC"""'], {}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.pad', 'tf.pad', (['x', 'self.paddings', '"""SYMMETRIC"""'], {}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.eye', 'tf.eye', (['(3)'], {'batch_shape': '[1, 1]'}), True, 'import tensorflow as tf\n'), (26, 'tensorflow.tile', 'tf.tile', (['self.kernel[:, :, (tf.newaxis), (tf.newaxis)]', '[1, 1, 3, 1]'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.eye', 'tf.eye', (['(3)'], {'batch_shape': '[1, 1]'}), True, 'import tensorflow as tf\n')] |
tracysaber/terngrad | cd7e5f1c59e87712a208fc1351defa029a340146 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
r"""Downloads and converts cifar10 data to TFRecords of TF-Example protos.
This module downloads the cifar10 data, uncompresses it, reads the files
that make up the cifar10 data and creates two TFRecord datasets: one for train
and one for test. Each TFRecord dataset is comprised of a set of TF-Example
protocol buffers, each of which contain a single image and label.
The script should take several minutes to run.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import cPickle
import os
import sys
import tarfile
import numpy as np
import math
from six.moves import urllib
import tensorflow as tf
from datasets import dataset_utils
tf.app.flags.DEFINE_integer('train_shards', 1000,
'Number of shards in training TFRecord files.')
FLAGS = tf.app.flags.FLAGS
# The URL where the CIFAR data can be downloaded.
_DATA_URL = 'https://www.cs.toronto.edu/~kriz/cifar-10-python.tar.gz'
# The number of training files.
_NUM_TRAIN_FILES = 5
# The number of training images.
_NUM_TRAIN_IMAGES = 50000
# The height and width of each image.
_IMAGE_SIZE = 32
# The names of the classes.
_CLASS_NAMES = [
'airplane',
'automobile',
'bird',
'cat',
'deer',
'dog',
'frog',
'horse',
'ship',
'truck',
]
def _add_to_tfrecord(filenames, name, dataset_dir):
"""Loads data from the cifar10 pickle files and writes files to a TFRecord.
Args:
filename: The filename of the cifar10 pickle file.
name: name of dataset -- 'train' or 'test'.
offset: An offset into the absolute number of images previously written.
Returns:
The new offset.
"""
assert _NUM_TRAIN_IMAGES % FLAGS.train_shards == 0
offset = 0
shard = 0
images_per_shard = _NUM_TRAIN_IMAGES / FLAGS.train_shards
if 'train' == name:
record_filename = _get_output_filename(dataset_dir, name, shard, FLAGS.train_shards)
elif 'test' == name:
record_filename = _get_output_filename(dataset_dir, name)
else:
raise ValueError('Illegal dataset name')
tfrecord_writer = tf.python_io.TFRecordWriter(record_filename)
for filename in filenames:
with tf.gfile.Open(filename, 'r') as f:
data = cPickle.load(f)
images = data['data']
num_images = images.shape[0]
images = images.reshape((num_images, 3, 32, 32))
labels = data['labels']
with tf.Graph().as_default():
image_placeholder = tf.placeholder(dtype=tf.uint8)
encoded_image = tf.image.encode_png(image_placeholder)
with tf.Session('') as sess:
for j in range(num_images):
sys.stdout.write('\r>> Reading file [%s] image %d' % (
filename, offset + 1))
sys.stdout.flush()
if ('train' == name) and ( math.floor(offset / images_per_shard) > shard) :
tfrecord_writer.close()
shard = shard + 1
record_filename = _get_output_filename(dataset_dir, name, shard, FLAGS.train_shards)
tfrecord_writer = tf.python_io.TFRecordWriter(record_filename)
image = np.squeeze(images[j]).transpose((1, 2, 0))
label = labels[j]
png_string = sess.run(encoded_image,
feed_dict={image_placeholder: image})
example = dataset_utils.image_to_tfexample(
png_string, 'png', _IMAGE_SIZE, _IMAGE_SIZE, label, _CLASS_NAMES[label])
tfrecord_writer.write(example.SerializeToString())
offset = offset + 1
tfrecord_writer.close()
return offset
def _get_output_filename(dataset_dir, split_name, shard=0, num_shards=1):
"""Creates the output filename.
Args:
dataset_dir: The dataset directory where the dataset is stored.
split_name: The name of the train/test split.
Returns:
An absolute file path.
"""
return '%s/%s-%.5d-of-%.5d' % (dataset_dir, split_name, shard, num_shards)
def _download_and_uncompress_dataset(dataset_dir):
"""Downloads cifar10 and uncompresses it locally.
Args:
dataset_dir: The directory where the temporary files are stored.
"""
filename = _DATA_URL.split('/')[-1]
filepath = os.path.join(dataset_dir, filename)
if not os.path.exists(filepath):
def _progress(count, block_size, total_size):
sys.stdout.write('\r>> Downloading %s %.1f%%' % (
filename, float(count * block_size) / float(total_size) * 100.0))
sys.stdout.flush()
filepath, _ = urllib.request.urlretrieve(_DATA_URL, filepath, _progress)
print()
statinfo = os.stat(filepath)
print('Successfully downloaded', filename, statinfo.st_size, 'bytes.')
tarfile.open(filepath, 'r:gz').extractall(dataset_dir)
def _clean_up_temporary_files(dataset_dir):
"""Removes temporary files used to create the dataset.
Args:
dataset_dir: The directory where the temporary files are stored.
"""
filename = _DATA_URL.split('/')[-1]
filepath = os.path.join(dataset_dir, filename)
tf.gfile.Remove(filepath)
tmp_dir = os.path.join(dataset_dir, 'cifar-10-batches-py')
tf.gfile.DeleteRecursively(tmp_dir)
def run(dataset_dir):
"""Runs the download and conversion operation.
Args:
dataset_dir: The dataset directory where the dataset is stored.
"""
if not tf.gfile.Exists(dataset_dir):
tf.gfile.MakeDirs(dataset_dir)
dataset_utils.download_and_uncompress_tarball(_DATA_URL, dataset_dir)
# First, process the training data:
#with tf.python_io.TFRecordWriter(training_filename) as tfrecord_writer:
filenames = []
for i in range(_NUM_TRAIN_FILES):
filenames.append(os.path.join(dataset_dir,
'cifar-10-batches-py',
'data_batch_%d' % (i + 1))) # 1-indexed.
_add_to_tfrecord(filenames, 'train', dataset_dir)
# Next, process the testing data:
#with tf.python_io.TFRecordWriter(testing_filename) as tfrecord_writer:
filenames = []
filenames.append( os.path.join(dataset_dir,
'cifar-10-batches-py',
'test_batch'))
_add_to_tfrecord(filenames, 'test', dataset_dir)
# Finally, write the labels file:
labels_to_class_names = dict(zip(range(len(_CLASS_NAMES)), _CLASS_NAMES))
dataset_utils.write_label_file(labels_to_class_names, dataset_dir)
_clean_up_temporary_files(dataset_dir)
print('\nFinished converting the Cifar10 dataset!')
| [
"tensorflow.Graph",
"tensorflow.gfile.DeleteRecursively",
"tensorflow.gfile.Open",
"tensorflow.gfile.Exists",
"numpy.squeeze",
"tensorflow.app.flags.DEFINE_integer",
"tensorflow.placeholder",
"tensorflow.python_io.TFRecordWriter",
"tensorflow.image.encode_png",
"tensorflow.gfile.MakeDirs",
"tensorflow.gfile.Remove",
"tensorflow.Session"
] | slim/datasets/download_convert_and_shard_cifar10.py | [(41, 'tensorflow.app.flags.DEFINE_integer', 'tf.app.flags.DEFINE_integer', (['"""train_shards"""', '(1000)', '"""Number of shards in training TFRecord files."""'], {}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.python_io.TFRecordWriter', 'tf.python_io.TFRecordWriter', (['record_filename'], {}), True, 'import tensorflow as tf\n'), (159, 'os.path.join', 'os.path.join', (['dataset_dir', 'filename'], {}), False, 'import os\n'), (180, 'os.path.join', 'os.path.join', (['dataset_dir', 'filename'], {}), False, 'import os\n'), (181, 'tensorflow.gfile.Remove', 'tf.gfile.Remove', (['filepath'], {}), True, 'import tensorflow as tf\n'), (183, 'os.path.join', 'os.path.join', (['dataset_dir', '"""cifar-10-batches-py"""'], {}), False, 'import os\n'), (184, 'tensorflow.gfile.DeleteRecursively', 'tf.gfile.DeleteRecursively', (['tmp_dir'], {}), True, 'import tensorflow as tf\n'), (196, 'datasets.dataset_utils.download_and_uncompress_tarball', 'dataset_utils.download_and_uncompress_tarball', (['_DATA_URL', 'dataset_dir'], {}), False, 'from datasets import dataset_utils\n'), (217, 'datasets.dataset_utils.write_label_file', 'dataset_utils.write_label_file', (['labels_to_class_names', 'dataset_dir'], {}), False, 'from datasets import dataset_utils\n'), (161, 'os.path.exists', 'os.path.exists', (['filepath'], {}), False, 'import os\n'), (166, 'six.moves.urllib.request.urlretrieve', 'urllib.request.urlretrieve', (['_DATA_URL', 'filepath', '_progress'], {}), False, 'from six.moves import urllib\n'), (168, 'os.stat', 'os.stat', (['filepath'], {}), False, 'import os\n'), (193, 'tensorflow.gfile.Exists', 'tf.gfile.Exists', (['dataset_dir'], {}), True, 'import tensorflow as tf\n'), (194, 'tensorflow.gfile.MakeDirs', 'tf.gfile.MakeDirs', (['dataset_dir'], {}), True, 'import tensorflow as tf\n'), (210, 'os.path.join', 'os.path.join', (['dataset_dir', '"""cifar-10-batches-py"""', '"""test_batch"""'], {}), False, 'import os\n'), (98, 'tensorflow.gfile.Open', 'tf.gfile.Open', (['filename', '"""r"""'], {}), True, 'import tensorflow as tf\n'), (99, 'cPickle.load', 'cPickle.load', (['f'], {}), False, 'import cPickle\n'), (108, 'tensorflow.placeholder', 'tf.placeholder', ([], {'dtype': 'tf.uint8'}), True, 'import tensorflow as tf\n'), (109, 'tensorflow.image.encode_png', 'tf.image.encode_png', (['image_placeholder'], {}), True, 'import tensorflow as tf\n'), (165, 'sys.stdout.flush', 'sys.stdout.flush', ([], {}), False, 'import sys\n'), (202, 'os.path.join', 'os.path.join', (['dataset_dir', '"""cifar-10-batches-py"""', "('data_batch_%d' % (i + 1))"], {}), False, 'import os\n'), (111, 'tensorflow.Session', 'tf.Session', (['""""""'], {}), True, 'import tensorflow as tf\n'), (170, 'tarfile.open', 'tarfile.open', (['filepath', '"""r:gz"""'], {}), False, 'import tarfile\n'), (107, 'tensorflow.Graph', 'tf.Graph', ([], {}), True, 'import tensorflow as tf\n'), (114, 'sys.stdout.write', 'sys.stdout.write', (["('\\r>> Reading file [%s] image %d' % (filename, offset + 1))"], {}), False, 'import sys\n'), (116, 'sys.stdout.flush', 'sys.stdout.flush', ([], {}), False, 'import sys\n'), (130, 'datasets.dataset_utils.image_to_tfexample', 'dataset_utils.image_to_tfexample', (['png_string', '"""png"""', '_IMAGE_SIZE', '_IMAGE_SIZE', 'label', '_CLASS_NAMES[label]'], {}), False, 'from datasets import dataset_utils\n'), (122, 'tensorflow.python_io.TFRecordWriter', 'tf.python_io.TFRecordWriter', (['record_filename'], {}), True, 'import tensorflow as tf\n'), (118, 'math.floor', 'math.floor', (['(offset / images_per_shard)'], {}), False, 'import math\n'), (124, 'numpy.squeeze', 'np.squeeze', (['images[j]'], {}), True, 'import numpy as np\n')] |
TanguyUrvoy/normalizing-flows | e485fe0875c117517353a9ab40e19ff951561cfc | import tensorflow as tf
import tensorflow_probability as tfp
from normalizing_flows.flows import Transform
from . import Parameterize
def gaussianize(x, mus, log_sigmas, inverse=tf.constant(False)):
if inverse:
z = tf.math.exp(log_sigmas)*x + mus
ldj = tf.math.reduce_sum(log_sigmas, axis=[1,2,3])
else:
z = (x - mus)*tf.math.exp(-log_sigmas)
ldj = -tf.math.reduce_sum(log_sigmas, axis=[1,2,3])
return z, ldj
class Gaussianize(Parameterize):
"""
Implementation of parameterize for a Gaussian prior. Corresponds to the "Gaussianization" step in Glow (Kingma et al, 2018).
"""
def __init__(self, input_shape=None, name='gaussianize', *args, **kwargs):
super().__init__(*args, num_parameters=2, input_shape=input_shape, name=name, **kwargs)
def _forward(self, x1, x2, **kwargs):
params = self.parameterizer(x1)
mus, log_sigmas = params[:,:,:,0::2], params[:,:,:,1::2]
z2, fldj = gaussianize(x2, mus, log_sigmas)
return z2, fldj
def _inverse(self, x1, z2, **kwargs):
params = self.parameterizer(x1)
mus, log_sigmas = params[:,:,:,0::2], params[:,:,:,1::2]
x2, ildj = gaussianize(z2, mus, log_sigmas, inverse=tf.constant(True))
return x2, ildj
def log_gaussianize(x, mus, log_sigmas, inverse=tf.constant(False)):
"""
Standardize log normal random variable x using mus and log_sigmas.
"""
if inverse:
scales = tf.math.exp(log_sigmas)
log_x = tf.math.log(x)
ldj = log_x
log_y = log_x*scales + mus
ldj += log_sigmas
z = tf.math.exp(log_y)
return z, ldj
else:
scales = tf.math.exp(-log_sigmas)
log_x = tf.math.log(x)
ldj = -log_x
log_y = (log_x - mus)*scales
ldj -= log_sigmas
z = tf.math.exp(log_y)
return z, ldj
class LogGaussianize(Parameterize):
"""
Implementation of Parameterize for a log-Gaussian prior.
"""
def __init__(self, input_shape=None, epsilon=1.0E-3, name='log_gaussianize', *args, **kwargs):
super().__init__(*args, num_parameters=2, input_shape=input_shape, name=name, **kwargs)
self.epsilon = epsilon
def _forward(self, x1, x2, **kwargs):
"""
A log normal RV X = exp(mu + sigma*Z) where Z ~ N(0,I).
The forward pass scales to a standard log normal with mu=0, sigma=1 by computing:
exp(Z) = (X / exp(mu))^(1/sigma)
"""
params = self.parameterizer(x1)
mus, log_sigmas = params[:,:,:,0::2], params[:,:,:,1::2]
# compute softplus activation
z2, ldj = log_gaussianize(x2, mus, log_sigmas)
z2 = tf.where(x2 > self.epsilon, z2, x2)
ldj = tf.where(x2 > self.epsilon, ldj, tf.zeros_like(ldj))
return z2, tf.math.reduce_sum(ldj, axis=[1,2,3])
def _inverse(self, x1, z2, **kwargs):
params = self.parameterizer(x1)
mus, log_sigmas = params[:,:,:,0::2], params[:,:,:,1::2]
x2, ldj = log_gaussianize(z2, mus, log_sigmas, inverse=tf.constant(True))
x2 = tf.where(z2 > self.epsilon, x2, z2)
ldj = tf.where(z2 > self.epsilon, ldj, tf.zeros_like(ldj))
return x2, tf.math.reduce_sum(ldj, axis=[1,2,3])
def half_gaussianize(x, log_sigmas, inverse=tf.constant(False)):
if inverse:
z = tf.math.exp(log_sigmas)*x
ldj = tf.math.reduce_sum(log_sigmas, axis=[1,2,3])
else:
z = x*tf.math.exp(-log_sigmas)
ldj = -tf.math.reduce_sum(log_sigmas, axis=[1,2,3])
return z, ldj
class HalfGaussianize(Parameterize):
"""
Implementation of parameterize for a half-Gaussian prior.
"""
def __init__(self, input_shape=None, name='gaussianize', *args, **kwargs):
super().__init__(*args, num_parameters=1, input_shape=input_shape, name=name, **kwargs)
def _forward(self, x1, x2, **kwargs):
log_sigmas = self.parameterizer(x1)
z2, fldj = half_gaussianize(x2, log_sigmas)
return z2, fldj
def _inverse(self, x1, z2, **kwargs):
log_sigmas = self.parameterizer(x1)
x2, ildj = half_gaussianize(z2, log_sigmas, inverse=tf.constant(True))
return x2, ildj
def exponentiate(x, log_lambdas, inverse=tf.constant(False)):
if not inverse:
z = tf.math.exp(log_lambdas)*x
ldj = tf.math.reduce_sum(log_lambdas, axis=[1,2,3])
else:
z = x*tf.math.exp(-log_lambdas)
ldj = -tf.math.reduce_sum(log_lambdas, axis=[1,2,3])
return z, ldj
class Exponentiate(Parameterize):
"""
Implementation of parameterize for an exponetial prior.
"""
def __init__(self, input_shape=None, name='gaussianize', *args, **kwargs):
super().__init__(*args, num_parameters=1, input_shape=input_shape, name=name, **kwargs)
def _forward(self, x1, x2, **kwargs):
log_lambdas = self.parameterizer(x1)
z2, fldj = exponentiate(x2, log_lambdas)
return z2, fldj
def _inverse(self, x1, z2, **kwargs):
log_lambdas = self.parameterizer(x1)
x2, ildj = exponentiate(z2, log_lambdas, inverse=tf.constant(True))
return x2, ildj
| [
"tensorflow.constant",
"tensorflow.math.log",
"tensorflow.math.exp",
"tensorflow.zeros_like",
"tensorflow.math.reduce_sum",
"tensorflow.where"
] | normalizing_flows/flows/glow/gaussianize.py | [(6, 'tensorflow.constant', 'tf.constant', (['(False)'], {}), True, 'import tensorflow as tf\n'), (34, 'tensorflow.constant', 'tf.constant', (['(False)'], {}), True, 'import tensorflow as tf\n'), (85, 'tensorflow.constant', 'tf.constant', (['(False)'], {}), True, 'import tensorflow as tf\n'), (111, 'tensorflow.constant', 'tf.constant', (['(False)'], {}), True, 'import tensorflow as tf\n'), (9, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['log_sigmas'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (39, 'tensorflow.math.exp', 'tf.math.exp', (['log_sigmas'], {}), True, 'import tensorflow as tf\n'), (40, 'tensorflow.math.log', 'tf.math.log', (['x'], {}), True, 'import tensorflow as tf\n'), (44, 'tensorflow.math.exp', 'tf.math.exp', (['log_y'], {}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.math.exp', 'tf.math.exp', (['(-log_sigmas)'], {}), True, 'import tensorflow as tf\n'), (48, 'tensorflow.math.log', 'tf.math.log', (['x'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.math.exp', 'tf.math.exp', (['log_y'], {}), True, 'import tensorflow as tf\n'), (73, 'tensorflow.where', 'tf.where', (['(x2 > self.epsilon)', 'z2', 'x2'], {}), True, 'import tensorflow as tf\n'), (81, 'tensorflow.where', 'tf.where', (['(z2 > self.epsilon)', 'x2', 'z2'], {}), True, 'import tensorflow as tf\n'), (88, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['log_sigmas'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (114, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['log_lambdas'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (11, 'tensorflow.math.exp', 'tf.math.exp', (['(-log_sigmas)'], {}), True, 'import tensorflow as tf\n'), (12, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['log_sigmas'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (74, 'tensorflow.zeros_like', 'tf.zeros_like', (['ldj'], {}), True, 'import tensorflow as tf\n'), (75, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['ldj'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (82, 'tensorflow.zeros_like', 'tf.zeros_like', (['ldj'], {}), True, 'import tensorflow as tf\n'), (83, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['ldj'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (87, 'tensorflow.math.exp', 'tf.math.exp', (['log_sigmas'], {}), True, 'import tensorflow as tf\n'), (90, 'tensorflow.math.exp', 'tf.math.exp', (['(-log_sigmas)'], {}), True, 'import tensorflow as tf\n'), (91, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['log_sigmas'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (113, 'tensorflow.math.exp', 'tf.math.exp', (['log_lambdas'], {}), True, 'import tensorflow as tf\n'), (116, 'tensorflow.math.exp', 'tf.math.exp', (['(-log_lambdas)'], {}), True, 'import tensorflow as tf\n'), (117, 'tensorflow.math.reduce_sum', 'tf.math.reduce_sum', (['log_lambdas'], {'axis': '[1, 2, 3]'}), True, 'import tensorflow as tf\n'), (8, 'tensorflow.math.exp', 'tf.math.exp', (['log_sigmas'], {}), True, 'import tensorflow as tf\n'), (31, 'tensorflow.constant', 'tf.constant', (['(True)'], {}), True, 'import tensorflow as tf\n'), (80, 'tensorflow.constant', 'tf.constant', (['(True)'], {}), True, 'import tensorflow as tf\n'), (108, 'tensorflow.constant', 'tf.constant', (['(True)'], {}), True, 'import tensorflow as tf\n'), (134, 'tensorflow.constant', 'tf.constant', (['(True)'], {}), True, 'import tensorflow as tf\n')] |
jleni/lola | 9b9a2122aefc97d9ed1529b875912816f1acb5d6 | """
Various utility functions.
"""
import numpy as np
import tensorflow as tf
def batch_to_seq(h, nbatch, nsteps, flat=False):
if flat:
h = tf.reshape(h, [nbatch, nsteps])
else:
h = tf.reshape(h, [nbatch, nsteps, -1])
return [tf.squeeze(v, [1]) for v in tf.split(axis=1, num_or_size_splits=nsteps, value=h)]
def seq_to_batch(h, flat = False):
shape = h[0].get_shape().as_list()
if not flat:
assert(len(shape) > 1)
nh = h[0].get_shape()[-1].value
return tf.reshape(tf.concat(axis=1, values=h), [-1, nh])
else:
return tf.reshape(tf.stack(values=h, axis=1), [-1])
def lstm(xs, s, scope, nh, init_scale=1.0):
nbatch, nin = [v.value for v in xs[0].get_shape()]
nsteps = len(xs)
with tf.variable_scope(scope):
wx = tf.get_variable("wx", [nin, nh*4], initializer=ortho_init(init_scale))
wh = tf.get_variable("wh", [nh, nh*4], initializer=ortho_init(init_scale))
b = tf.get_variable("b", [nh*4], initializer=tf.constant_initializer(0.0))
c, h = tf.split(axis=1, num_or_size_splits=2, value=s)
for idx, x in enumerate(xs):
c = c
h = h
z = tf.matmul(x, wx) + tf.matmul(h, wh) + b
i, f, o, u = tf.split(axis=1, num_or_size_splits=4, value=z)
i = tf.nn.sigmoid(i)
f = tf.nn.sigmoid(f)
o = tf.nn.sigmoid(o)
u = tf.tanh(u)
c = f*c + i*u
h = o*tf.tanh(c)
xs[idx] = h
s = tf.concat(axis=1, values=[c, h])
return xs, s
def ortho_init(scale=1.0):
def _ortho_init(shape, dtype, partition_info=None):
#lasagne ortho init for tf
shape = tuple(shape)
if len(shape) == 2:
flat_shape = shape
elif len(shape) == 4: # assumes NHWC
flat_shape = (np.prod(shape[:-1]), shape[-1])
else:
raise NotImplementedError
a = np.random.normal(0.0, 1.0, flat_shape)
u, _, v = np.linalg.svd(a, full_matrices=False)
q = u if u.shape == flat_shape else v # pick the one with the correct shape
q = q.reshape(shape)
return (scale * q[:shape[0], :shape[1]]).astype(np.float32)
return _ortho_init
def get_session():
return tf.get_default_session()
def var_shape(x):
out = x.get_shape().as_list()
return out
def intprod(x):
return int(np.prod(x))
def numel(x):
return intprod(var_shape(x))
def flatgrad(loss, var_list, clip_norm=None):
grads = tf.gradients(loss, var_list)
if clip_norm is not None:
grads = [tf.clip_by_norm(grad, clip_norm=clip_norm) for grad in grads]
return tf.concat(axis=0, values=[
tf.reshape(grad if grad is not None else tf.zeros_like(v), [numel(v)])
for (v, grad) in zip(var_list, grads)
])
class SetFromFlat(object):
def __init__(self, var_list, dtype=tf.float32):
assigns = []
shapes = list(map(var_shape, var_list))
total_size = np.sum([intprod(shape) for shape in shapes])
self.theta = theta = tf.placeholder(dtype, [total_size])
start = 0
assigns = []
for (shape, v) in zip(shapes, var_list):
size = intprod(shape)
assigns.append(tf.assign(v, tf.reshape(theta[start:start + size], shape)))
start += size
self.op = tf.group(*assigns)
def __call__(self, theta):
get_session().run(self.op, feed_dict={self.theta: theta})
class GetFlat(object):
def __init__(self, var_list):
self.op = tf.concat(axis=0, values=[tf.reshape(v, [numel(v)]) for v in var_list])
def __call__(self):
return get_session().run(self.op)
def get_monte_carlo(reward, y, trace_length, batch_size):
reward = np.reshape(reward, ((batch_size, trace_length)))
reward_buffer = np.zeros(((batch_size, trace_length+1)))
reward_buffer[:, :trace_length] = reward
discounted_reward = np.zeros(((batch_size, trace_length)))
for t in range(trace_length-1, -1, -1):
reward_buffer[:,t+1:] *= y
discounted_reward[:,t] = np.sum(reward_buffer[:,t:],1)
return np.reshape(discounted_reward,(batch_size *trace_length))
def make_cube(trace_length):
cube = tf.Variable(tf.zeros([trace_length, trace_length, trace_length]))
cube_ops = []
for i in range(trace_length):
cube_ops.append(cube[i, :(i+1), :(i+1)].assign(tf.ones([i+1, i+1])))
return cube, cube_ops
| [
"tensorflow.concat",
"tensorflow.zeros",
"tensorflow.stack",
"tensorflow.tanh",
"tensorflow.group",
"numpy.linalg.svd",
"numpy.reshape",
"tensorflow.gradients",
"tensorflow.squeeze",
"tensorflow.clip_by_norm",
"numpy.zeros",
"tensorflow.matmul",
"tensorflow.nn.sigmoid",
"tensorflow.placeholder",
"tensorflow.zeros_like",
"tensorflow.split",
"numpy.sum",
"tensorflow.get_default_session",
"tensorflow.reshape",
"tensorflow.ones",
"tensorflow.constant_initializer",
"numpy.random.normal",
"numpy.prod",
"tensorflow.variable_scope"
] | lola/utils.py | [(34, 'tensorflow.split', 'tf.split', ([], {'axis': '(1)', 'num_or_size_splits': '(2)', 'value': 's'}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.concat', 'tf.concat', ([], {'axis': '(1)', 'values': '[c, h]'}), True, 'import tensorflow as tf\n'), (70, 'tensorflow.get_default_session', 'tf.get_default_session', ([], {}), True, 'import tensorflow as tf\n'), (87, 'tensorflow.gradients', 'tf.gradients', (['loss', 'var_list'], {}), True, 'import tensorflow as tf\n'), (124, 'numpy.reshape', 'np.reshape', (['reward', '(batch_size, trace_length)'], {}), True, 'import numpy as np\n'), (125, 'numpy.zeros', 'np.zeros', (['(batch_size, trace_length + 1)'], {}), True, 'import numpy as np\n'), (127, 'numpy.zeros', 'np.zeros', (['(batch_size, trace_length)'], {}), True, 'import numpy as np\n'), (133, 'numpy.reshape', 'np.reshape', (['discounted_reward', '(batch_size * trace_length)'], {}), True, 'import numpy as np\n'), (10, 'tensorflow.reshape', 'tf.reshape', (['h', '[nbatch, nsteps]'], {}), True, 'import tensorflow as tf\n'), (12, 'tensorflow.reshape', 'tf.reshape', (['h', '[nbatch, nsteps, -1]'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.squeeze', 'tf.squeeze', (['v', '[1]'], {}), True, 'import tensorflow as tf\n'), (29, 'tensorflow.variable_scope', 'tf.variable_scope', (['scope'], {}), True, 'import tensorflow as tf\n'), (39, 'tensorflow.split', 'tf.split', ([], {'axis': '(1)', 'num_or_size_splits': '(4)', 'value': 'z'}), True, 'import tensorflow as tf\n'), (40, 'tensorflow.nn.sigmoid', 'tf.nn.sigmoid', (['i'], {}), True, 'import tensorflow as tf\n'), (41, 'tensorflow.nn.sigmoid', 'tf.nn.sigmoid', (['f'], {}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.nn.sigmoid', 'tf.nn.sigmoid', (['o'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.tanh', 'tf.tanh', (['u'], {}), True, 'import tensorflow as tf\n'), (61, 'numpy.random.normal', 'np.random.normal', (['(0.0)', '(1.0)', 'flat_shape'], {}), True, 'import numpy as np\n'), (62, 'numpy.linalg.svd', 'np.linalg.svd', (['a'], {'full_matrices': '(False)'}), True, 'import numpy as np\n'), (79, 'numpy.prod', 'np.prod', (['x'], {}), True, 'import numpy as np\n'), (102, 'tensorflow.placeholder', 'tf.placeholder', (['dtype', '[total_size]'], {}), True, 'import tensorflow as tf\n'), (109, 'tensorflow.group', 'tf.group', (['*assigns'], {}), True, 'import tensorflow as tf\n'), (131, 'numpy.sum', 'np.sum', (['reward_buffer[:, t:]', '(1)'], {}), True, 'import numpy as np\n'), (137, 'tensorflow.zeros', 'tf.zeros', (['[trace_length, trace_length, trace_length]'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.split', 'tf.split', ([], {'axis': '(1)', 'num_or_size_splits': 'nsteps', 'value': 'h'}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.concat', 'tf.concat', ([], {'axis': '(1)', 'values': 'h'}), True, 'import tensorflow as tf\n'), (23, 'tensorflow.stack', 'tf.stack', ([], {'values': 'h', 'axis': '(1)'}), True, 'import tensorflow as tf\n'), (45, 'tensorflow.tanh', 'tf.tanh', (['c'], {}), True, 'import tensorflow as tf\n'), (89, 'tensorflow.clip_by_norm', 'tf.clip_by_norm', (['grad'], {'clip_norm': 'clip_norm'}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(0.0)'], {}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.matmul', 'tf.matmul', (['x', 'wx'], {}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.matmul', 'tf.matmul', (['h', 'wh'], {}), True, 'import tensorflow as tf\n'), (141, 'tensorflow.ones', 'tf.ones', (['[i + 1, i + 1]'], {}), True, 'import tensorflow as tf\n'), (58, 'numpy.prod', 'np.prod', (['shape[:-1]'], {}), True, 'import numpy as np\n'), (107, 'tensorflow.reshape', 'tf.reshape', (['theta[start:start + size]', 'shape'], {}), True, 'import tensorflow as tf\n'), (91, 'tensorflow.zeros_like', 'tf.zeros_like', (['v'], {}), True, 'import tensorflow as tf\n')] |
mjbigdel/baselines | ea25b9e8b234e6ee1bca43083f8f3cf974143998 | """Deep Q learning graph
The functions in this file can are used to create the following functions:
======= act ========
Function to chose an action given an observation
Parameters
----------
observation: object
Observation that can be feed into the output of make_obs_ph
stochastic: bool
if set to False all the actions are always deterministic (default False)
update_eps_ph: float
update epsilon a new value, if negative no update happens
(default: no update)
Returns
-------
Tensor of dtype tf.int64 and shape (BATCH_SIZE,) with an action to be performed for
every element of the batch.
======= act (in case of parameter noise) ========
Function to chose an action given an observation
Parameters
----------
observation: object
Observation that can be feed into the output of make_obs_ph
stochastic: bool
if set to False all the actions are always deterministic (default False)
update_eps_ph: float
update epsilon to a new value, if negative no update happens
(default: no update)
reset_ph: bool
reset the perturbed policy by sampling a new perturbation
update_param_noise_threshold_ph: float
the desired threshold for the difference between non-perturbed and perturbed policy
update_param_noise_scale_ph: bool
whether or not to update the scale of the noise for the next time it is re-perturbed
Returns
-------
Tensor of dtype tf.int64 and shape (BATCH_SIZE,) with an action to be performed for
every element of the batch.
======= train =======
Function that takes a transition (s,a,r,s') and optimizes Bellman equation's error:
td_error = Q(s,a) - (r + gamma * max_a' Q(s', a'))
loss = huber_loss[td_error]
Parameters
----------
obs_t: object
a batch of observations
action: np.array
actions that were selected upon seeing obs_t.
dtype must be int32 and shape must be (batch_size,)
reward: np.array
immediate reward attained after executing those actions
dtype must be float32 and shape must be (batch_size,)
obs_tp1: object
observations that followed obs_t
done: np.array
1 if obs_t was the last observation in the episode and 0 otherwise
obs_tp1 gets ignored, but must be of the valid shape.
dtype must be float32 and shape must be (batch_size,)
weight: np.array
imporance weights for every element of the batch (gradient is multiplied
by the importance weight) dtype must be float32 and shape must be (batch_size,)
Returns
-------
td_error: np.array
a list of differences between Q(s,a) and the target in Bellman's equation.
dtype is float32 and shape is (batch_size,)
======= update_target ========
copy the parameters from optimized Q function to the target Q function.
In Q learning we actually optimize the following error:
Q(s,a) - (r + gamma * max_a' Q'(s', a'))
Where Q' is lagging behind Q to stablize the learning. For example for Atari
Q' is set to Q once every 10000 updates training steps.
"""
import tensorflow as tf
import baselines.common.tf_util as U
def scope_vars(scope, trainable_only=False):
"""
Get variables inside a scope
The scope can be specified as a string
Parameters
----------
scope: str or VariableScope
scope in which the variables reside.
trainable_only: bool
whether or not to return only the variables that were marked as trainable.
Returns
-------
vars: [tf.Variable]
list of variables in `scope`.
"""
return tf.get_collection(
tf.GraphKeys.TRAINABLE_VARIABLES if trainable_only else tf.GraphKeys.GLOBAL_VARIABLES,
scope=scope if isinstance(scope, str) else scope.name
)
def scope_name():
"""Returns the name of current scope as a string, e.g. deepq/q_func"""
return tf.get_variable_scope().name
def absolute_scope_name(relative_scope_name):
"""Appends parent scope name to `relative_scope_name`"""
return scope_name() + "/" + relative_scope_name
def default_param_noise_filter(var):
if var not in tf.trainable_variables():
# We never perturb non-trainable vars.
return False
if "fully_connected" in var.name:
# We perturb fully-connected layers.
return True
# The remaining layers are likely conv or layer norm layers, which we do not wish to
# perturb (in the former case because they only extract features, in the latter case because
# we use them for normalization purposes). If you change your network, you will likely want
# to re-consider which layers to perturb and which to keep untouched.
return False
def build_act(make_obs_ph, q_func, num_actions, scope="deepq", reuse=None):
"""Creates the act function:
Parameters
----------
make_obs_ph: str -> tf.placeholder or TfInput
a function that take a name and creates a placeholder of input with that name
q_func: (tf.Variable, int, str, bool) -> tf.Variable
the model that takes the following inputs:
observation_in: object
the output of observation placeholder
num_actions: int
number of actions
scope: str
reuse: bool
should be passed to outer variable scope
and returns a tensor of shape (batch_size, num_actions) with values of every action.
num_actions: int
number of actions.
scope: str or VariableScope
optional scope for variable_scope.
reuse: bool or None
whether or not the variables should be reused. To be able to reuse the scope must be given.
Returns
-------
act: (tf.Variable, bool, float) -> tf.Variable
function to select and action given observation.
` See the top of the file for details.
"""
with tf.variable_scope(scope, reuse=reuse):
observations_ph = make_obs_ph("observation")
stochastic_ph = tf.placeholder(tf.bool, (), name="stochastic")
update_eps_ph = tf.placeholder(tf.float32, (), name="update_eps")
eps = tf.get_variable("eps", (), initializer=tf.constant_initializer(0))
q_values = q_func(observations_ph.get(), num_actions, scope="q_func")
deterministic_actions = tf.argmax(q_values, axis=1)
batch_size = tf.shape(observations_ph.get())[0]
random_actions = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=num_actions, dtype=tf.int64)
chose_random = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=1, dtype=tf.float32) < eps
stochastic_actions = tf.where(chose_random, random_actions, deterministic_actions)
output_actions = tf.cond(stochastic_ph, lambda: stochastic_actions, lambda: deterministic_actions)
update_eps_expr = eps.assign(tf.cond(update_eps_ph >= 0, lambda: update_eps_ph, lambda: eps))
_act = U.function(inputs=[observations_ph, stochastic_ph, update_eps_ph],
outputs=output_actions,
givens={update_eps_ph: -1.0, stochastic_ph: True},
updates=[update_eps_expr])
def act(ob, stochastic=True, update_eps=-1):
return _act(ob, stochastic, update_eps)
return act
def build_act_with_param_noise(make_obs_ph, q_func, num_actions, scope="deepq", reuse=None, param_noise_filter_func=None):
"""Creates the act function with support for parameter space noise exploration (https://arxiv.org/abs/1706.01905):
Parameters
----------
make_obs_ph: str -> tf.placeholder or TfInput
a function that take a name and creates a placeholder of input with that name
q_func: (tf.Variable, int, str, bool) -> tf.Variable
the model that takes the following inputs:
observation_in: object
the output of observation placeholder
num_actions: int
number of actions
scope: str
reuse: bool
should be passed to outer variable scope
and returns a tensor of shape (batch_size, num_actions) with values of every action.
num_actions: int
number of actions.
scope: str or VariableScope
optional scope for variable_scope.
reuse: bool or None
whether or not the variables should be reused. To be able to reuse the scope must be given.
param_noise_filter_func: tf.Variable -> bool
function that decides whether or not a variable should be perturbed. Only applicable
if param_noise is True. If set to None, default_param_noise_filter is used by default.
Returns
-------
act: (tf.Variable, bool, float, bool, float, bool) -> tf.Variable
function to select and action given observation.
` See the top of the file for details.
"""
if param_noise_filter_func is None:
param_noise_filter_func = default_param_noise_filter
with tf.variable_scope(scope, reuse=reuse):
observations_ph = make_obs_ph("observation")
stochastic_ph = tf.placeholder(tf.bool, (), name="stochastic")
update_eps_ph = tf.placeholder(tf.float32, (), name="update_eps")
update_param_noise_threshold_ph = tf.placeholder(tf.float32, (), name="update_param_noise_threshold")
update_param_noise_scale_ph = tf.placeholder(tf.bool, (), name="update_param_noise_scale")
reset_ph = tf.placeholder(tf.bool, (), name="reset")
eps = tf.get_variable("eps", (), initializer=tf.constant_initializer(0))
param_noise_scale = tf.get_variable("param_noise_scale", (), initializer=tf.constant_initializer(0.01), trainable=False)
param_noise_threshold = tf.get_variable("param_noise_threshold", (), initializer=tf.constant_initializer(0.05), trainable=False)
# Unmodified Q.
q_values = q_func(observations_ph.get(), num_actions, scope="q_func")
# Perturbable Q used for the actual rollout.
q_values_perturbed = q_func(observations_ph.get(), num_actions, scope="perturbed_q_func")
# We have to wrap this code into a function due to the way tf.cond() works. See
# https://stackoverflow.com/questions/37063952/confused-by-the-behavior-of-tf-cond for
# a more detailed discussion.
def perturb_vars(original_scope, perturbed_scope):
all_vars = scope_vars(absolute_scope_name(original_scope))
all_perturbed_vars = scope_vars(absolute_scope_name(perturbed_scope))
assert len(all_vars) == len(all_perturbed_vars)
perturb_ops = []
for var, perturbed_var in zip(all_vars, all_perturbed_vars):
if param_noise_filter_func(perturbed_var):
# Perturb this variable.
op = tf.assign(perturbed_var, var + tf.random_normal(shape=tf.shape(var), mean=0., stddev=param_noise_scale))
else:
# Do not perturb, just assign.
op = tf.assign(perturbed_var, var)
perturb_ops.append(op)
assert len(perturb_ops) == len(all_vars)
return tf.group(*perturb_ops)
# Set up functionality to re-compute `param_noise_scale`. This perturbs yet another copy
# of the network and measures the effect of that perturbation in action space. If the perturbation
# is too big, reduce scale of perturbation, otherwise increase.
q_values_adaptive = q_func(observations_ph.get(), num_actions, scope="adaptive_q_func")
perturb_for_adaption = perturb_vars(original_scope="q_func", perturbed_scope="adaptive_q_func")
kl = tf.reduce_sum(tf.nn.softmax(q_values) * (tf.log(tf.nn.softmax(q_values)) - tf.log(tf.nn.softmax(q_values_adaptive))), axis=-1)
mean_kl = tf.reduce_mean(kl)
def update_scale():
with tf.control_dependencies([perturb_for_adaption]):
update_scale_expr = tf.cond(mean_kl < param_noise_threshold,
lambda: param_noise_scale.assign(param_noise_scale * 1.01),
lambda: param_noise_scale.assign(param_noise_scale / 1.01),
)
return update_scale_expr
# Functionality to update the threshold for parameter space noise.
update_param_noise_threshold_expr = param_noise_threshold.assign(tf.cond(update_param_noise_threshold_ph >= 0,
lambda: update_param_noise_threshold_ph, lambda: param_noise_threshold))
# Put everything together.
deterministic_actions = tf.argmax(q_values_perturbed, axis=1)
batch_size = tf.shape(observations_ph.get())[0]
random_actions = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=num_actions, dtype=tf.int64)
chose_random = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=1, dtype=tf.float32) < eps
stochastic_actions = tf.where(chose_random, random_actions, deterministic_actions)
output_actions = tf.cond(stochastic_ph, lambda: stochastic_actions, lambda: deterministic_actions)
update_eps_expr = eps.assign(tf.cond(update_eps_ph >= 0, lambda: update_eps_ph, lambda: eps))
updates = [
update_eps_expr,
tf.cond(reset_ph, lambda: perturb_vars(original_scope="q_func", perturbed_scope="perturbed_q_func"), lambda: tf.group(*[])),
tf.cond(update_param_noise_scale_ph, lambda: update_scale(), lambda: tf.Variable(0., trainable=False)),
update_param_noise_threshold_expr,
]
_act = U.function(inputs=[observations_ph, stochastic_ph, update_eps_ph, reset_ph, update_param_noise_threshold_ph, update_param_noise_scale_ph],
outputs=output_actions,
givens={update_eps_ph: -1.0, stochastic_ph: True, reset_ph: False, update_param_noise_threshold_ph: False, update_param_noise_scale_ph: False},
updates=updates)
def act(ob, reset=False, update_param_noise_threshold=False, update_param_noise_scale=False, stochastic=True, update_eps=-1):
return _act(ob, stochastic, update_eps, reset, update_param_noise_threshold, update_param_noise_scale)
return act
def build_train(make_obs_ph, q_func, num_actions, optimizer, grad_norm_clipping=None, gamma=1.0,
double_q=True, scope="deepq", reuse=None, param_noise=False, param_noise_filter_func=None):
"""Creates the train function:
Parameters
----------
make_obs_ph: str -> tf.placeholder or TfInput
a function that takes a name and creates a placeholder of input with that name
q_func: (tf.Variable, int, str, bool) -> tf.Variable
the model that takes the following inputs:
observation_in: object
the output of observation placeholder
num_actions: int
number of actions
scope: str
reuse: bool
should be passed to outer variable scope
and returns a tensor of shape (batch_size, num_actions) with values of every action.
num_actions: int
number of actions
reuse: bool
whether or not to reuse the graph variables
optimizer: tf.train.Optimizer
optimizer to use for the Q-learning objective.
grad_norm_clipping: float or None
clip gradient norms to this value. If None no clipping is performed.
gamma: float
discount rate.
double_q: bool
if true will use Double Q Learning (https://arxiv.org/abs/1509.06461).
In general it is a good idea to keep it enabled.
scope: str or VariableScope
optional scope for variable_scope.
reuse: bool or None
whether or not the variables should be reused. To be able to reuse the scope must be given.
param_noise: bool
whether or not to use parameter space noise (https://arxiv.org/abs/1706.01905)
param_noise_filter_func: tf.Variable -> bool
function that decides whether or not a variable should be perturbed. Only applicable
if param_noise is True. If set to None, default_param_noise_filter is used by default.
Returns
-------
act: (tf.Variable, bool, float) -> tf.Variable
function to select and action given observation.
` See the top of the file for details.
train: (object, np.array, np.array, object, np.array, np.array) -> np.array
optimize the error in Bellman's equation.
` See the top of the file for details.
update_target: () -> ()
copy the parameters from optimized Q function to the target Q function.
` See the top of the file for details.
debug: {str: function}
a bunch of functions to print debug data like q_values.
"""
if param_noise:
act_f = build_act_with_param_noise(make_obs_ph, q_func, num_actions, scope=scope, reuse=reuse,
param_noise_filter_func=param_noise_filter_func)
else:
act_f = build_act(make_obs_ph, q_func, num_actions, scope=scope, reuse=reuse)
with tf.variable_scope(scope, reuse=reuse):
# set up placeholders
obs_t_input = make_obs_ph("obs_t")
act_t_ph = tf.placeholder(tf.int32, [None], name="action")
rew_t_ph = tf.placeholder(tf.float32, [None], name="reward")
obs_tp1_input = make_obs_ph("obs_tp1")
done_mask_ph = tf.placeholder(tf.float32, [None], name="done")
importance_weights_ph = tf.placeholder(tf.float32, [None], name="weight")
# q network evaluation
q_t = q_func(obs_t_input.get(), num_actions, scope="q_func", reuse=True) # reuse parameters from act
q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=tf.get_variable_scope().name + "/q_func")
# target q network evalution
q_tp1 = q_func(obs_tp1_input.get(), num_actions, scope="target_q_func")
target_q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=tf.get_variable_scope().name + "/target_q_func")
# q scores for actions which we know were selected in the given state.
q_t_selected = tf.reduce_sum(q_t * tf.one_hot(act_t_ph, num_actions), 1)
# compute estimate of best possible value starting from state at t + 1
if double_q:
q_tp1_using_online_net = q_func(obs_tp1_input.get(), num_actions, scope="q_func", reuse=True)
q_tp1_best_using_online_net = tf.argmax(q_tp1_using_online_net, 1)
q_tp1_best = tf.reduce_sum(q_tp1 * tf.one_hot(q_tp1_best_using_online_net, num_actions), 1)
else:
q_tp1_best = tf.reduce_max(q_tp1, 1)
q_tp1_best_masked = (1.0 - done_mask_ph) * q_tp1_best
# compute RHS of bellman equation
q_t_selected_target = rew_t_ph + gamma * q_tp1_best_masked
# compute the error (potentially clipped)
td_error = q_t_selected - tf.stop_gradient(q_t_selected_target)
errors = U.huber_loss(td_error)
weighted_error = tf.reduce_mean(importance_weights_ph * errors)
# compute optimization op (potentially with gradient clipping)
if grad_norm_clipping is not None:
gradients = optimizer.compute_gradients(weighted_error, var_list=q_func_vars)
for i, (grad, var) in enumerate(gradients):
if grad is not None:
gradients[i] = (tf.clip_by_norm(grad, grad_norm_clipping), var)
optimize_expr = optimizer.apply_gradients(gradients)
else:
optimize_expr = optimizer.minimize(weighted_error, var_list=q_func_vars)
# update_target_fn will be called periodically to copy Q network to target Q network
update_target_expr = []
for var, var_target in zip(sorted(q_func_vars, key=lambda v: v.name),
sorted(target_q_func_vars, key=lambda v: v.name)):
update_target_expr.append(var_target.assign(var))
update_target_expr = tf.group(*update_target_expr)
# Create callable functions
train = U.function(
inputs=[
obs_t_input,
act_t_ph,
rew_t_ph,
obs_tp1_input,
done_mask_ph,
importance_weights_ph
],
outputs=td_error,
updates=[optimize_expr]
)
update_target = U.function([], [], updates=[update_target_expr])
q_values = U.function([obs_t_input], q_t)
return act_f, train, update_target, {'q_values': q_values}
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"tensorflow.stop_gradient",
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"tensorflow.trainable_variables",
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"tensorflow.shape",
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"tensorflow.reduce_max",
"tensorflow.nn.softmax",
"tensorflow.reduce_mean",
"tensorflow.assign",
"tensorflow.constant_initializer",
"tensorflow.variable_scope",
"tensorflow.get_variable_scope"
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10jqka-aicubes/opinion_classification | 43f193522b033bd857d294737b3f9dbaac7aed9f | # coding=utf-8
# Copyright 2020 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Code for serializing raw fine-tuning data into tfrecords"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import collections
import os
import random
import numpy as np
# import tensorflow.compat.v1 as tf
import tensorflow as tf
import configure_finetuning
from finetune import feature_spec
from util import utils
import pdb
class Preprocessor(object):
"""Class for loading, preprocessing, and serializing fine-tuning datasets."""
def __init__(self, config: configure_finetuning.FinetuningConfig, tasks):
self._config = config
self._tasks = tasks
self._name_to_task = {task.name: task for task in tasks}
self._feature_specs = feature_spec.get_shared_feature_specs(config)
for task in tasks:
self._feature_specs += task.get_feature_specs()
self._name_to_feature_config = {spec.name: spec.get_parsing_spec() for spec in self._feature_specs}
assert len(self._name_to_feature_config) == len(self._feature_specs)
def prepare_train(self):
return self._serialize_dataset(self._tasks, True, "train")
def prepare_predict(self, tasks, split):
return self._serialize_dataset(tasks, False, split)
def _serialize_dataset(self, tasks, is_training, split):
"""Write out the dataset as tfrecords."""
dataset_name = "_".join(sorted([task.name for task in tasks]))
dataset_name += "_" + split
dataset_prefix = os.path.join(self._config.preprocessed_data_dir, dataset_name)
tfrecords_path = dataset_prefix + ".tfrecord"
metadata_path = dataset_prefix + ".metadata"
batch_size = self._config.train_batch_size if is_training else self._config.eval_batch_size
utils.log("Loading dataset", dataset_name)
n_examples = None
if self._config.use_tfrecords_if_existing and tf.gfile.Exists(metadata_path):
n_examples = utils.load_json(metadata_path)["n_examples"]
if n_examples is None:
utils.log("Existing tfrecords not found so creating")
examples = []
for task in tasks:
task_examples = task.get_examples(split)
examples += task_examples
if is_training:
random.shuffle(examples)
utils.mkdir(tfrecords_path.rsplit("/", 1)[0])
n_examples = self.serialize_examples(examples, is_training, tfrecords_path, batch_size)
utils.write_json({"n_examples": n_examples}, metadata_path)
input_fn = self._input_fn_builder(tfrecords_path, is_training)
if is_training:
steps = int(n_examples // batch_size * self._config.num_train_epochs)
else:
steps = n_examples // batch_size
return input_fn, steps
def serialize_examples(self, examples, is_training, output_file, batch_size):
"""Convert a set of `InputExample`s to a TFRecord file."""
n_examples = 0
with tf.python_io.TFRecordWriter(output_file) as writer:
for (ex_index, example) in enumerate(examples):
if ex_index % 2000 == 0:
utils.log("Writing example {:} of {:}".format(ex_index, len(examples)))
for tf_example in self._example_to_tf_example(
example, is_training, log=self._config.log_examples and ex_index < 1
):
writer.write(tf_example.SerializeToString())
n_examples += 1
# add padding so the dataset is a multiple of batch_size
while n_examples % batch_size != 0:
writer.write(self._make_tf_example(task_id=len(self._config.task_names)).SerializeToString())
n_examples += 1
return n_examples
def _example_to_tf_example(self, example, is_training, log=False):
# pdb.set_trace()
examples = self._name_to_task[example.task_name].featurize(example, is_training, log)
if not isinstance(examples, list):
examples = [examples]
for example in examples:
yield self._make_tf_example(**example)
def _make_tf_example(self, **kwargs):
"""Make a tf.train.Example from the provided features."""
for k in kwargs:
if k not in self._name_to_feature_config:
raise ValueError("Unknown feature", k)
features = collections.OrderedDict()
for spec in self._feature_specs:
if spec.name in kwargs:
values = kwargs[spec.name]
else:
values = spec.get_default_values()
if (
isinstance(values, int)
or isinstance(values, bool)
or isinstance(values, float)
or isinstance(values, np.float32)
or (isinstance(values, np.ndarray) and values.size == 1)
):
values = [values]
if spec.is_int_feature:
feature = tf.train.Feature(int64_list=tf.train.Int64List(value=list(values)))
else:
feature = tf.train.Feature(float_list=tf.train.FloatList(value=list(values)))
features[spec.name] = feature
return tf.train.Example(features=tf.train.Features(feature=features))
def _input_fn_builder(self, input_file, is_training):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
def input_fn(params):
"""The actual input function."""
d = tf.data.TFRecordDataset(input_file)
if is_training:
d = d.repeat()
d = d.shuffle(buffer_size=100)
return d.apply(
tf.contrib.data.map_and_batch(
self._decode_tfrecord, batch_size=params["batch_size"], drop_remainder=True
)
)
return input_fn
def _decode_tfrecord(self, record):
"""Decodes a record to a TensorFlow example."""
example = tf.parse_single_example(record, self._name_to_feature_config)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name, tensor in example.items():
if tensor.dtype == tf.int64:
example[name] = tf.cast(tensor, tf.int32)
else:
example[name] = tensor
return example
| [
"tensorflow.gfile.Exists",
"tensorflow.data.TFRecordDataset",
"tensorflow.cast",
"tensorflow.python_io.TFRecordWriter",
"tensorflow.contrib.data.map_and_batch",
"tensorflow.train.Features",
"tensorflow.parse_single_example"
] | opinion_classification/electra/finetune/preprocessing.py | [(45, 'finetune.feature_spec.get_shared_feature_specs', 'feature_spec.get_shared_feature_specs', (['config'], {}), False, 'from finetune import feature_spec\n'), (61, 'os.path.join', 'os.path.join', (['self._config.preprocessed_data_dir', 'dataset_name'], {}), False, 'import os\n'), (66, 'util.utils.log', 'utils.log', (['"""Loading dataset"""', 'dataset_name'], {}), False, 'from util import utils\n'), (123, 'collections.OrderedDict', 'collections.OrderedDict', ([], {}), False, 'import collections\n'), (164, 'tensorflow.parse_single_example', 'tf.parse_single_example', (['record', 'self._name_to_feature_config'], {}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.gfile.Exists', 'tf.gfile.Exists', (['metadata_path'], {}), True, 'import tensorflow as tf\n'), (72, 'util.utils.log', 'utils.log', (['"""Existing tfrecords not found so creating"""'], {}), False, 'from util import utils\n'), (83, 'util.utils.write_json', 'utils.write_json', (["{'n_examples': n_examples}", 'metadata_path'], {}), False, 'from util import utils\n'), (95, 'tensorflow.python_io.TFRecordWriter', 'tf.python_io.TFRecordWriter', (['output_file'], {}), True, 'import tensorflow as tf\n'), (149, 'tensorflow.data.TFRecordDataset', 'tf.data.TFRecordDataset', (['input_file'], {}), True, 'import tensorflow as tf\n'), (69, 'util.utils.load_json', 'utils.load_json', (['metadata_path'], {}), False, 'from util import utils\n'), (80, 'random.shuffle', 'random.shuffle', (['examples'], {}), False, 'import random\n'), (142, 'tensorflow.train.Features', 'tf.train.Features', ([], {'feature': 'features'}), True, 'import tensorflow as tf\n'), (155, 'tensorflow.contrib.data.map_and_batch', 'tf.contrib.data.map_and_batch', (['self._decode_tfrecord'], {'batch_size': "params['batch_size']", 'drop_remainder': '(True)'}), True, 'import tensorflow as tf\n'), (170, 'tensorflow.cast', 'tf.cast', (['tensor', 'tf.int32'], {}), True, 'import tensorflow as tf\n')] |
moondaiy/TensorFlowTutorials | c7f0255e3704c5a40f72ac0707684fb201123c1c | import tensorflow as tf
#add_layer 函数里面所有的with都是为了tensorboard添加上去的
def add_layer(inputs, in_size, out_size, activation_function=None,nameScope="layer"):
# add one more layer and return the output of this layer
with tf.name_scope(nameScope):
with tf.name_scope('weights'):
Weights = tf.Variable(tf.random_normal([in_size, out_size]), name='W')
with tf.name_scope('biases'):
biases = tf.Variable(tf.zeros([1, out_size]) + 0.1, name='b')
with tf.name_scope('Wx_plus_b'):
Wx_plus_b = tf.add(tf.matmul(inputs, Weights), biases)
if activation_function is None:
outputs = Wx_plus_b
else:
outputs = activation_function(Wx_plus_b, )
return outputs
# 这个就是在tensorboard上可视化的时候的区别：
# 使用with tf.name_scope('inputs')可以将xs和ys包含进来
# 形成一个大的图层，图层的名字就是with tf.name_scope()方法里的参数。
with tf.name_scope('inputs'):
xs = tf.placeholder(tf.float32, [None, 1], name='x_input') # 这个name的属性，也是为了使用tensorboard，添加上来的
ys = tf.placeholder(tf.float32, [None, 1], name='y_input') # 同上
# add hidden layer
l1 = add_layer(xs, 1, 10, activation_function=tf.nn.relu,nameScope="layerTest1")
# add output layer
prediction = add_layer(l1, 10, 1, activation_function=None,nameScope="layerTest2")
sess = tf.Session()
# 上面的wtih或者是name都是可选的，可以选择添加，也可以选择不添加，but下面的这一行是一定要写的。
# 这个表明了 在当前的目录下面创建以恶搞logs的文件家，然后把图的信息保存进去
# 这样运行完这段代码之后，就会有一个logs的文件夹被创建
if int((tf.__version__).split('.')[1]) < 12 and int((tf.__version__).split('.')[0]) < 1: # tensorflow version < 0.12
writer = tf.train.SummaryWriter('logs/', sess.graph)
else: # tensorflow version >= 0.12
writer = tf.summary.FileWriter("logs/", sess.graph)
if int((tf.__version__).split('.')[1]) < 12 and int((tf.__version__).split('.')[0]) < 1:
init = tf.initialize_all_variables()
else:
init = tf.global_variables_initializer()
sess.run(init) | [
"tensorflow.matmul",
"tensorflow.__version__.split",
"tensorflow.summary.FileWriter",
"tensorflow.zeros",
"tensorflow.placeholder",
"tensorflow.train.SummaryWriter",
"tensorflow.global_variables_initializer",
"tensorflow.initialize_all_variables",
"tensorflow.name_scope",
"tensorflow.Session",
"tensorflow.random_normal"
] | TensorFlowBasic/tensorBoard.py | [(41, 'tensorflow.Session', 'tf.Session', ([], {}), True, 'import tensorflow as tf\n'), (30, 'tensorflow.name_scope', 'tf.name_scope', (['"""inputs"""'], {}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.placeholder', 'tf.placeholder', (['tf.float32', '[None, 1]'], {'name': '"""x_input"""'}), True, 'import tensorflow as tf\n'), (33, 'tensorflow.placeholder', 'tf.placeholder', (['tf.float32', '[None, 1]'], {'name': '"""y_input"""'}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.train.SummaryWriter', 'tf.train.SummaryWriter', (['"""logs/"""', 'sess.graph'], {}), True, 'import tensorflow as tf\n'), (49, 'tensorflow.summary.FileWriter', 'tf.summary.FileWriter', (['"""logs/"""', 'sess.graph'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.initialize_all_variables', 'tf.initialize_all_variables', ([], {}), True, 'import tensorflow as tf\n'), (54, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (7, 'tensorflow.name_scope', 'tf.name_scope', (['nameScope'], {}), True, 'import tensorflow as tf\n'), (9, 'tensorflow.name_scope', 'tf.name_scope', (['"""weights"""'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.name_scope', 'tf.name_scope', (['"""biases"""'], {}), True, 'import tensorflow as tf\n'), (16, 'tensorflow.name_scope', 'tf.name_scope', (['"""Wx_plus_b"""'], {}), True, 'import tensorflow as tf\n'), (11, 'tensorflow.random_normal', 'tf.random_normal', (['[in_size, out_size]'], {}), True, 'import tensorflow as tf\n'), (17, 'tensorflow.matmul', 'tf.matmul', (['inputs', 'Weights'], {}), True, 'import tensorflow as tf\n'), (46, 'tensorflow.__version__.split', 'tf.__version__.split', (['"""."""'], {}), True, 'import tensorflow as tf\n'), (46, 'tensorflow.__version__.split', 'tf.__version__.split', (['"""."""'], {}), True, 'import tensorflow as tf\n'), (51, 'tensorflow.__version__.split', 'tf.__version__.split', (['"""."""'], {}), True, 'import tensorflow as tf\n'), (51, 'tensorflow.__version__.split', 'tf.__version__.split', (['"""."""'], {}), True, 'import tensorflow as tf\n'), (14, 'tensorflow.zeros', 'tf.zeros', (['[1, out_size]'], {}), True, 'import tensorflow as tf\n')] |
qianhk/FeiPython | c87578d3c04b7345a99fef7390c8ea12c6f2c716 | #!/usr/bin/env python3
# coding=utf-8
import tensorflow as tf
import numpy as np
# with tf.device('/cpu:0'):
#
# sess = tf.Session()
#
# # a_gpu = tf.Variable(0, name="a_gup")
# # sess = tf.Session(config=tf.ConfigProto(allow_soft_placement=True))
#
# hello = tf.constant('Hello, TensorFlow!')
# print(sess.run(hello))
#
# a = tf.constant(10)
# b = tf.constant(32)
# print(sess.run(a + b))
#
# c = tf.constant('haHa')
# print(sess.run(c))
#
# sess.close()
identity_matrix = tf.diag([1.0, 3.0, 1.0])
A = tf.truncated_normal([2, 3])
B = tf.fill([2, 3], 5.0)
C = tf.random_uniform([3, 2], maxval=100)
D = tf.convert_to_tensor(np.array([[1., 2., 3.], [-3., -7., -1.], [0., 5., -2.]]))
sess = tf.Session()
# sess.run(tf.global_variables_initializer())
# print(sess.run(tf.random_normal(mean=10, shape=[10])))
# A = tf.Variable(tf.random_normal(shape=[1, 1]))
# sess.run(tf.global_variables_initializer())
# print(sess.run(A))
print('\nI=')
print(sess.run(identity_matrix))
print('\nA=')
print(sess.run(A))
print('\nB=')
print(sess.run(B))
print('\nC=')
C = sess.run(C)
print(C)
print('\nD=')
print(sess.run(D))
print('\nA+B=')
print(sess.run(A + B))
print('\nB-B=')
print(sess.run(B - B))
print('\nB*I=')
BI = tf.matmul(B, identity_matrix)
print(sess.run(BI))
print('\ntranspose(C)=')
print(sess.run(tf.transpose(C)))
print('\ntranspose(D)=')
print(sess.run(tf.transpose(D)))
print('\ninverse(D)=')
print(sess.run(tf.matrix_inverse(D)))
print('\ndeterminant(D)={:.1f}'.format(sess.run(tf.matrix_determinant(D))))
print('\ncholesky(D):')
print(sess.run(tf.cholesky(identity_matrix)))
print('\nselfAdjointEig(D):')
print(sess.run(tf.self_adjoint_eig(D)))
print(sess.run(tf.div(13, 4)))
print(sess.run(tf.truediv(13, 4)))
print(sess.run(tf.floordiv(13, 4)))
print(sess.run(tf.mod(13.2, 4)))
print(sess.run(tf.cross([1, 0, 0], [0, 1, 0])))
print(sess.run(tf.square([1, 2, 3])))
def custom_polynomial(local_tf, value):
return local_tf.subtract(3 * local_tf.square(value), value) + 10
print((sess.run(custom_polynomial(tf, 11))))
alpha = 0.1
val = tf.constant([[2, 3], [1, 4]], dtype=tf.float32)
l1 = tf.contrib.layers.l1_regularizer(alpha)(val)
l2 = tf.contrib.layers.l2_regularizer(alpha)(val)
A = [[0.8, 0.6, 0.3], [0.1, 0.6, 0.4]]
B = [1, 1]
top_k = tf.nn.top_k(A, 2)
in_top_k = tf.nn.in_top_k(A, B, 1)
sess.run(tf.global_variables_initializer())
print(f'\nl1={sess.run(l1)} l2={sess.run(l2)}')
a = np.array([1, 2, 3], dtype=np.float32)
tf_v = tf.Variable(5, dtype=tf.float32)
sess.run(tf.global_variables_initializer())
print(f'a * tf_v = {sess.run(a * tf_v)}')
weights = tf.constant([[1.0, -2], [-3, 4]]);
regular_l1 = tf.contrib.layers.l1_regularizer(0.5)(weights)
regular_l2 = tf.contrib.layers.l2_regularizer(0.5)(weights)
print(f'\nregular_l1={sess.run(regular_l1)} regular_l2={sess.run(regular_l2)}')
val_val = sess.run(val)
print('\nval=' + str(val_val))
print(f'\nargmax_0={val_val.argmax(0)} argmax_1={val_val.argmax(1)}')
print('\ntf.argmax(val, 0)=' + str(sess.run(tf.argmax(val, 0))))
print('tf.argmax(val, 1)=' + str(sess.run(tf.argmax(val, 1))))
values, indices = sess.run(top_k)
print(f'\ntop_k: values={values}\nindices={indices}')
print(f'in_top_k = {sess.run(in_top_k)}')
sess.close()
| [
"tensorflow.floordiv",
"tensorflow.matrix_determinant",
"tensorflow.diag",
"tensorflow.cholesky",
"tensorflow.Variable",
"tensorflow.div",
"tensorflow.nn.top_k",
"tensorflow.self_adjoint_eig",
"tensorflow.Session",
"tensorflow.square",
"tensorflow.nn.in_top_k",
"tensorflow.cross",
"tensorflow.argmax",
"tensorflow.matmul",
"tensorflow.fill",
"tensorflow.truncated_normal",
"tensorflow.contrib.layers.l1_regularizer",
"tensorflow.global_variables_initializer",
"numpy.array",
"tensorflow.truediv",
"tensorflow.constant",
"tensorflow.transpose",
"tensorflow.matrix_inverse",
"tensorflow.mod",
"tensorflow.contrib.layers.l2_regularizer",
"tensorflow.random_uniform"
] | Python3Test/TensorflowTest.py | [(27, 'tensorflow.diag', 'tf.diag', (['[1.0, 3.0, 1.0]'], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.truncated_normal', 'tf.truncated_normal', (['[2, 3]'], {}), True, 'import tensorflow as tf\n'), (29, 'tensorflow.fill', 'tf.fill', (['[2, 3]', '(5.0)'], {}), True, 'import tensorflow as tf\n'), (30, 'tensorflow.random_uniform', 'tf.random_uniform', (['[3, 2]'], {'maxval': '(100)'}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.Session', 'tf.Session', ([], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.matmul', 'tf.matmul', (['B', 'identity_matrix'], {}), True, 'import tensorflow as tf\n'), (96, 'tensorflow.constant', 'tf.constant', (['[[2, 3], [1, 4]]'], {'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (102, 'tensorflow.nn.top_k', 'tf.nn.top_k', (['A', '(2)'], {}), True, 'import tensorflow as tf\n'), (103, 'tensorflow.nn.in_top_k', 'tf.nn.in_top_k', (['A', 'B', '(1)'], {}), True, 'import tensorflow as tf\n'), (109, 'numpy.array', 'np.array', (['[1, 2, 3]'], {'dtype': 'np.float32'}), True, 'import numpy as np\n'), (110, 'tensorflow.Variable', 'tf.Variable', (['(5)'], {'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (116, 'tensorflow.constant', 'tf.constant', (['[[1.0, -2], [-3, 4]]'], {}), True, 'import tensorflow as tf\n'), (31, 'numpy.array', 'np.array', (['[[1.0, 2.0, 3.0], [-3.0, -7.0, -1.0], [0.0, 5.0, -2.0]]'], {}), True, 'import numpy as np\n'), (97, 'tensorflow.contrib.layers.l1_regularizer', 'tf.contrib.layers.l1_regularizer', (['alpha'], {}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.contrib.layers.l2_regularizer', 'tf.contrib.layers.l2_regularizer', (['alpha'], {}), True, 'import tensorflow as tf\n'), (105, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (112, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (117, 'tensorflow.contrib.layers.l1_regularizer', 'tf.contrib.layers.l1_regularizer', (['(0.5)'], {}), True, 'import tensorflow as tf\n'), (118, 'tensorflow.contrib.layers.l2_regularizer', 'tf.contrib.layers.l2_regularizer', (['(0.5)'], {}), True, 'import tensorflow as tf\n'), (64, 'tensorflow.transpose', 'tf.transpose', (['C'], {}), True, 'import tensorflow as tf\n'), (67, 'tensorflow.transpose', 'tf.transpose', (['D'], {}), True, 'import tensorflow as tf\n'), (70, 'tensorflow.matrix_inverse', 'tf.matrix_inverse', (['D'], {}), True, 'import tensorflow as tf\n'), (75, 'tensorflow.cholesky', 'tf.cholesky', (['identity_matrix'], {}), True, 'import tensorflow as tf\n'), (78, 'tensorflow.self_adjoint_eig', 'tf.self_adjoint_eig', (['D'], {}), True, 'import tensorflow as tf\n'), (80, 'tensorflow.div', 'tf.div', (['(13)', '(4)'], {}), True, 'import tensorflow as tf\n'), (81, 'tensorflow.truediv', 'tf.truediv', (['(13)', '(4)'], {}), True, 'import tensorflow as tf\n'), (82, 'tensorflow.floordiv', 'tf.floordiv', (['(13)', '(4)'], {}), True, 'import tensorflow as tf\n'), (83, 'tensorflow.mod', 'tf.mod', (['(13.2)', '(4)'], {}), True, 'import tensorflow as tf\n'), (85, 'tensorflow.cross', 'tf.cross', (['[1, 0, 0]', '[0, 1, 0]'], {}), True, 'import tensorflow as tf\n'), (86, 'tensorflow.square', 'tf.square', (['[1, 2, 3]'], {}), True, 'import tensorflow as tf\n'), (72, 'tensorflow.matrix_determinant', 'tf.matrix_determinant', (['D'], {}), True, 'import tensorflow as tf\n'), (124, 'tensorflow.argmax', 'tf.argmax', (['val', '(0)'], {}), True, 'import tensorflow as tf\n'), (125, 'tensorflow.argmax', 'tf.argmax', (['val', '(1)'], {}), True, 'import tensorflow as tf\n')] |
drewlinsley/ffn_membrane | 4b4638c00eed847fa6a7958a7fdbeedca4236561 | """Contextual model with partial filters."""
import warnings
import numpy as np
import tensorflow as tf
import initialization
from pooling import max_pool3d
# Dependency for symmetric weight ops is in models/layers/ff.py
class hGRU(object):
def __getitem__(self, name):
return getattr(self, name)
def __contains__(self, name):
return hasattr(self, name)
def __init__(
self,
layer_name,
num_in_feats,
timesteps,
hgru_dhw,
hgru_k,
ff_conv_dhw,
ff_conv_k,
ff_conv_strides=[[1, 1, 1, 1, 1], [1, 1, 1, 1, 1]],
ff_pool_dhw=[[1, 2, 2], [1, 2, 2]],
ff_pool_strides=[[1, 2, 2], [1, 2, 2]],
fb_mode = 'transpose',
fb_dhw=[[1, 2, 2], [1, 2, 2]],
padding='SAME',
peephole=False,
aux=None,
train=True):
"""Global initializations and settings."""
self.in_k = num_in_feats
self.timesteps = timesteps
self.padding = padding
self.train = train
self.layer_name = layer_name
self.fb_mode = fb_mode # 'transpose', 'replicate_n_transpose'
self.peephole = peephole
# Sort through and assign the auxilliary variables
default_vars = self.defaults()
if aux is not None and isinstance(aux, dict):
for k, v in aux.iteritems():
default_vars[k] = v
self.update_params(default_vars)
# Kernel shapes
self.ff_conv_dhw = ff_conv_dhw
self.ff_conv_k = ff_conv_k
self.ff_conv_strides = ff_conv_strides
self.ff_pool_dhw = ff_pool_dhw
self.ff_pool_strides = ff_pool_strides
self.hgru_dhw = hgru_dhw
self.hgru_k = hgru_k
self.fb_dhw = fb_dhw
# Nonlinearities and initializations
if isinstance(self.recurrent_nl, basestring):
self.recurrent_nl = self.interpret_nl(self.recurrent_nl)
# Handle BN scope reuse
if self.reuse:
self.scope_reuse = tf.AUTO_REUSE
else:
self.scope_reuse = None
self.param_initializer = {
'moving_mean': tf.constant_initializer(0., dtype=self.dtype),
'moving_variance': tf.constant_initializer(1., dtype=self.dtype),
'gamma': tf.constant_initializer(0.1, dtype=self.dtype)
}
self.param_trainable = {
'moving_mean': False,
'moving_variance': False,
'gamma': True
}
self.param_collections = {
'moving_mean': None, # [tf.GraphKeys.UPDATE_OPS],
'moving_variance': None, # [tf.GraphKeys.UPDATE_OPS],
'gamma': None
}
def defaults(self):
"""A dictionary containing defaults for auxilliary variables.
These are adjusted by a passed aux dict variable."""
return {
'lesion_alpha': False,
'lesion_mu': False,
'lesion_omega': False,
'lesion_kappa': False,
'dtype': tf.float32,
'hidden_init': 'random',
'gate_bias_init': 'chronos',
'train': True,
'recurrent_nl': tf.nn.tanh,
'gate_nl': tf.nn.sigmoid,
'ff_nl': tf.nn.elu,
'normal_initializer': True,
'symmetric_weights': False,
'symmetric_gate_weights': False,
'hgru_gate_dhw': [[1, 1, 1],[1, 1, 1],[1, 1, 1], [1, 1, 1], [1, 1, 1]], # Gate kernel size
'hgru_dilations': [[1, 1, 1, 1, 1], [1, 1, 1, 1, 1], [1, 1, 1, 1, 1], [1, 1, 1, 1, 1], [1, 1, 1, 1, 1]],
'gamma': True, # Scale P
'alpha': True, # divisive eCRF
'mu': True, # subtractive eCRF
'adapation': False,
'reuse': False,
'multiplicative_excitation': True,
'readout': 'fb', # l2 or fb
'hgru_ids': ['h1', 'h2', 'h3', 'fb2', 'fb1'], # Labels for the hGRUs
'include_pooling': True,
'resize_kernel': tf.image.ResizeMethod.BILINEAR,
'batch_norm': False, # Not working
}
def interpret_nl(self, nl_type):
"""Return activation function."""
if nl_type == 'tanh':
return tf.nn.tanh
elif nl_type == 'relu':
return tf.nn.relu
elif nl_type == 'elu':
return tf.nn.elu
elif nl_type == 'selu':
return tf.nn.selu
elif nl_type == 'leaky_relu':
return tf.nn.leaky_relu
elif nl_type == 'hard_tanh':
return lambda z: tf.maximum(tf.minimum(z, 1), 0)
else:
raise NotImplementedError(nl_type)
def update_params(self, kwargs):
"""Update the class attributes with kwargs."""
if kwargs is not None:
for k, v in kwargs.iteritems():
setattr(self, k, v)
def symmetric_weights(self, w, name):
"""Apply symmetric weight sharing."""
conv_w_t = tf.transpose(w, (2, 3, 0, 1))
conv_w_symm = 0.5 * (conv_w_t + tf.transpose(conv_w_t, (1, 0, 2, 3)))
conv_w = tf.transpose(conv_w_symm, (2, 3, 0, 1), name=name)
return conv_w
def prepare_tensors(self):
""" Prepare recurrent/forward weight matrices.
(np.prod([h, w, k]) / 2) - k params in the surround filter
"""
# FEEDFORWARD AND FEEDBACK KERNELS
lower_feats = self.in_k
for idx, (higher_feats, ff_dhw, fb_dhw) in enumerate(
zip(self.ff_conv_k,
self.ff_conv_dhw,
self.fb_dhw)):
setattr(
self,
'fb_kernel_%s' % idx,
tf.get_variable(
name='%s_fb_kernel__%s' % (self.layer_name, idx),
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=fb_dhw + [lower_feats, higher_feats],
dtype=self.dtype,
uniform=self.normal_initializer),
trainable=True))
setattr(
self,
'fb_bias_%s' % idx,
tf.get_variable(
name='%s_fb_bias_%s' % (self.layer_name, idx),
dtype=self.dtype,
initializer=tf.ones([lower_feats], dtype=self.dtype),
trainable=True))
setattr(
self,
'ff_kernel_%s' % idx,
tf.get_variable(
name='%s_ff_kernel_%s' % (self.layer_name, idx),
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=ff_dhw + [lower_feats, higher_feats],
dtype=self.dtype,
uniform=self.normal_initializer),
trainable=True))
setattr(
self,
'ff_bias_%s' % idx,
tf.get_variable(
name='%s_ff_bias_%s' % (self.layer_name, idx),
dtype=self.dtype,
initializer=tf.ones([higher_feats], dtype=self.dtype),
trainable=True))
lower_feats = higher_feats
# HGRU KERNELS
for idx, layer in enumerate(self.hgru_ids):
with tf.variable_scope(
'%s_hgru_weights_%s' % (self.layer_name, layer)):
setattr(
self,
'horizontal_kernels_%s' % layer,
tf.get_variable(
name='%s_horizontal' % self.layer_name,
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=self.hgru_dhw[idx] + [self.hgru_k[idx], self.hgru_k[idx]],
dtype=self.dtype,
uniform=self.normal_initializer),
trainable=True))
g_shape = self.hgru_gate_dhw[idx] + [self.hgru_k[idx], self.hgru_k[idx]]
setattr(
self,
'gain_kernels_%s' % layer,
tf.get_variable(
name='%s_gain' % self.layer_name,
dtype=self.dtype,
trainable=True,
initializer=initialization.xavier_initializer(
shape=g_shape,
dtype=self.dtype,
uniform=self.normal_initializer,
mask=None)))
m_shape = self.hgru_gate_dhw[idx] + [self.hgru_k[idx], self.hgru_k[idx]]
setattr(
self,
'mix_kernels_%s' % layer,
tf.get_variable(
name='%s_mix' % self.layer_name,
dtype=self.dtype,
trainable=True,
initializer=initialization.xavier_initializer(
shape=m_shape,
dtype=self.dtype,
uniform=self.normal_initializer,
mask=None)))
# Gain bias
bias_shape = [1, 1, 1, 1, self.hgru_k[idx]]
if self.gate_bias_init == 'chronos':
bias_init = -tf.log(
tf.random_uniform(
bias_shape,
minval=1,
maxval=self.timesteps - 1,
dtype=self.dtype))
else:
bias_init = tf.ones(bias_shape, dtype=self.dtype)
setattr(
self,
'gain_bias_%s' % layer,
tf.get_variable(
name='%s_gain_bias' % self.layer_name,
dtype=self.dtype,
trainable=True,
initializer=bias_init))
if self.gate_bias_init == 'chronos':
bias_init = -bias_init
else:
bias_init = tf.ones(bias_shape, dtype=self.dtype)
setattr(
self,
'mix_bias_%s' % layer,
tf.get_variable(
name='%s_mix_bias' % self.layer_name,
dtype=self.dtype,
trainable=True,
initializer=bias_init))
# Divisive params
if self.alpha and not self.lesion_alpha:
setattr(
self,
'alpha_%s' % layer,
tf.get_variable(
name='%s_alpha' % self.layer_name,
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=bias_shape,
dtype=self.dtype,
uniform=self.normal_initializer,
mask=None)))
elif self.lesion_alpha:
setattr(
self,
'alpha_%s' % layer,
tf.constant(0.))
else:
setattr(
self,
'alpha_%s' % layer,
tf.constant(1.))
if self.mu and not self.lesion_mu:
setattr(
self,
'mu_%s' % layer,
tf.get_variable(
name='%s_mu' % self.layer_name,
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=bias_shape,
dtype=self.dtype,
uniform=self.normal_initializer,
mask=None)))
elif self.lesion_mu:
setattr(
self,
'mu_%s' % layer,
tf.constant(0.))
else:
setattr(
self,
'mu_%s' % layer,
tf.constant(1.))
if self.gamma:
setattr(
self,
'gamma_%s' % layer,
tf.get_variable(
name='%s_gamma' % self.layer_name,
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=bias_shape,
dtype=self.dtype,
uniform=self.normal_initializer,
mask=None)))
else:
setattr(
self,
'gamma_%s' % layer,
tf.constant(1.))
if self.multiplicative_excitation:
if self.lesion_kappa:
setattr(
self,
'kappa_%s' % layer,
tf.constant(0.))
else:
setattr(
self,
'kappa_%s' % layer,
tf.get_variable(
name='%s_kappa' % self.layer_name,
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=bias_shape,
dtype=self.dtype,
uniform=self.normal_initializer,
mask=None)))
if self.lesion_omega:
setattr(
self,
'omega_%s' % layer,
tf.constant(0.))
else:
setattr(
self,
'omega_%s' % layer,
tf.get_variable(
name='%s_omega' % self.layer_name,
dtype=self.dtype,
initializer=initialization.xavier_initializer(
shape=bias_shape,
dtype=self.dtype,
uniform=self.normal_initializer,
mask=None)))
else:
setattr(
self,
'kappa_%s' % layer,
tf.constant(1.))
setattr(
self,
'omega_%s' % layer,
tf.constant(1.))
if self.adapation:
setattr(
self,
'eta_%s' % layer,
tf.get_variable(
name='%s_eta' % self.layer_name,
dtype=self.dtype,
initializer=tf.random_uniform(
[self.timesteps], dtype=tf.float32)))
if self.lesion_omega:
setattr(
self,
'omega_%s' % layer,
tf.constant(0.))
if self.lesion_kappa:
setattr(
self,
'kappa_%s' % layer,
tf.constant(0.))
if self.reuse:
# Make the batchnorm variables
scopes = ['g1_bn', 'g2_bn', 'c1_bn', 'c2_bn']
bn_vars = ['moving_mean', 'moving_variance', 'gamma']
for s in scopes:
with tf.variable_scope(s):
for v in bn_vars:
tf.get_variable(
trainable=self.param_trainable[v],
name=v,
dtype=self.dtype,
shape=[self.hgru_k[idx]],
collections=self.param_collections[v],
initializer=self.param_initializer[v])
self.param_initializer = None
def resize_x_to_y(
self,
x,
y,
kernel,
bias,
strides,
mode='transpose',
use_bias=True):
"""Resize activity x to the size of y using interpolation."""
y_size = y.get_shape().as_list()
if mode == 'resize':
return tf.image.resize_images(
x,
y_size[:-1],
kernel,
align_corners=True)
elif mode == 'transpose':
# strides = np.asarray(self.pool_strides)
# strides[1:] *= len(self.ff_conv_k)
# kernels = np.asarray(self.pooling_kernel)
# kernels[1:] *= len(self.ff_conv_k)
# return tf.layers.conv3d_transpose(
# inputs=x,
# strides=strides,
# padding=self.padding,
# filters=y_size[-1],
# kernel_size=kernels,
# trainable=self.train,
# use_bias=use_bias,
# activation=self.ff_nl)
resized = tf.nn.conv3d_transpose(
value=x,
filter=kernel,
output_shape=y_size,
strides=[1] + strides + [1],
padding=self.padding,
name='resize_x_to_y')
resized = tf.nn.bias_add(
resized,
bias)
resized = self.ff_nl(resized)
return resized
elif mode == 'replicate_n_transpose':
resized = tf.image.resize_images(
x,
y_size[:-1],
kernel,
align_corners=False)
resized = tf.nn.conv3d_transpose(
value=resized,
filter=kernel,
output_shape=y_size,
strides=[1, 1, 1, 1, 1],
padding='SAME',
name='resize_x_to_y')
resized = tf.nn.bias_add(
resized,
bias)
resized = self.ff_nl(resized)
return resized
else:
raise NotImplementedError(mode)
def conv_3d_op(
self,
data,
weights,
strides,
symmetric_weights=False,
dilations=None):
"""3D convolutions for hgru."""
if dilations is None:
dilations = [1, 1, 1, 1, 1]
w_shape = [int(w) for w in weights.get_shape()]
if len(w_shape) > 1 and int(w_shape[-2]) > 1:
# Full convolutions
if symmetric_weights:
g = tf.get_default_graph()
with g.gradient_override_map({'Conv3D': 'SymmetricConv3D'}):
activities = tf.nn.conv3d(
data,
weights,
strides,
padding=self.padding)
# TODO (jk): removed dilations=dilations to accommodate r1.4
else:
activities = tf.nn.conv3d(
data,
weights,
strides,
padding=self.padding)
# TODO (jk): removed dilations=dilations to accommodate r1.4
else:
raise RuntimeError
return activities
def circuit_input(self, h2, layer, var_scope, layer_idx):
"""Calculate gain and inh horizontal activities."""
gain_kernels = getattr(self, 'gain_kernels_%s' % layer)
gain_bias = getattr(self, 'gain_bias_%s' % layer)
horizontal_kernels = getattr(self, 'horizontal_kernels_%s' % layer)
# h_bias = getattr(self, 'h_bias_%s' % layer)
g1_intermediate = self.conv_3d_op(
data=h2,
weights=gain_kernels,
strides=[1, 1, 1, 1, 1],
symmetric_weights=self.symmetric_gate_weights,
dilations=self.hgru_dilations[layer_idx])
with tf.variable_scope(
'%s/g1_bn' % var_scope,
reuse=self.scope_reuse) as scope:
g1_intermediate = tf.contrib.layers.batch_norm(
inputs=g1_intermediate + gain_bias,
scale=True,
center=False,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
g1 = self.gate_nl(g1_intermediate)
h2 *= g1
# Horizontal activities
c1 = self.conv_3d_op(
data=h2,
weights=horizontal_kernels,
strides=[1, 1, 1, 1, 1],
symmetric_weights=self.symmetric_weights,
dilations=self.hgru_dilations[layer_idx])
return c1, g1
def circuit_output(self, h1, layer, var_scope, layer_idx):
"""Calculate mix and exc horizontal activities."""
mix_kernels = getattr(self, 'mix_kernels_%s' % layer)
mix_bias = getattr(self, 'mix_bias_%s' % layer)
horizontal_kernels = getattr(self, 'horizontal_kernels_%s' % layer)
# h_bias = getattr(self, 'h_bias_%s' % layer)
g2_intermediate = self.conv_3d_op(
data=h1,
weights=mix_kernels,
strides=[1, 1, 1, 1, 1],
symmetric_weights=self.symmetric_gate_weights,
dilations=self.hgru_dilations[layer_idx])
with tf.variable_scope(
'%s/g2_bn' % var_scope,
reuse=self.scope_reuse) as scope:
g2_intermediate = tf.contrib.layers.batch_norm(
inputs=g2_intermediate + mix_bias,
scale=True,
center=False,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
g2 = self.gate_nl(g2_intermediate)
# Horizontal activities
c2 = self.conv_3d_op(
data=h1,
weights=horizontal_kernels,
strides=[1, 1, 1, 1, 1],
symmetric_weights=self.symmetric_weights,
dilations=self.hgru_dilations[layer_idx])
return c2, g2
def input_integration(self, x, c1, h2, layer):
"""Integration on the input."""
alpha = getattr(self, 'alpha_%s' % layer)
mu = getattr(self, 'mu_%s' % layer)
return self.recurrent_nl(x - ((alpha * h2 + mu) * c1))
def output_integration(self, h1, c2, g2, h2, layer):
"""Integration on the output."""
if self.multiplicative_excitation:
# Multiplicative gating I * (P + Q)
gamma = getattr(self, 'gamma_%s' % layer)
kappa = getattr(self, 'kappa_%s' % layer)
omega = getattr(self, 'omega_%s' % layer)
e = gamma * c2
a = kappa * (h1 + e)
m = omega * (h1 * e)
h2_hat = self.recurrent_nl(a + m)
else:
# Additive gating I + P + Q
gamma = getattr(self, 'gamma_%s' % layer)
h2_hat = self.recurrent_nl(
h1 + gamma * c2)
return (g2 * h2) + ((1 - g2) * h2_hat)
def hgru_ops(self, i0, x, h2, layer, layer_idx):
"""hGRU body."""
var_scope = '%s_hgru_weights' % layer
# Circuit input receives recurrent output h2
c1, g1 = self.circuit_input(
h2=h2,
layer=layer,
var_scope=var_scope,
layer_idx=layer_idx)
with tf.variable_scope(
'%s/c1_bn' % var_scope,
reuse=self.scope_reuse) as scope:
c1 = tf.contrib.layers.batch_norm(
inputs=c1,
scale=True,
center=False,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
# Calculate input (-) integration: h1 (4)
h1 = self.input_integration(
x=x,
c1=c1,
h2=h2,
layer=layer)
# Circuit output receives recurrent input h1
c2, g2 = self.circuit_output(
h1=h1,
layer=layer,
var_scope=var_scope,
layer_idx=layer_idx)
with tf.variable_scope(
'%s/c2_bn' % var_scope,
reuse=self.scope_reuse) as scope:
c2 = tf.contrib.layers.batch_norm(
inputs=c2,
scale=True,
center=False,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
# Calculate output (+) integration: h2 (8, 9)
h2 = self.output_integration(
h1=h1,
c2=c2,
g2=g2,
h2=h2,
layer=layer)
if self.adapation:
eta = getattr(self, 'eta_%s' % layer)
e = tf.gather(eta, i0, axis=-1)
h2 *= e
return h1, h2
def full(self, i0, x, l1_h2, l2_h2, l3_h2):
"""hGRU body.
Take the recurrent h2 from a low level and imbue it with
information froma high layer. This means to treat the lower
layer h2 as the X and the higher layer h2 as the recurrent state.
This will serve as I/E from the high layer along with feedback
kernels.
h1 -> conv -> h2 -> conv -> h3 -> fb -> h2 h2 -> fb -> h1 h1 h1
"""
# LAYER 1
_, l1_h2 = self.hgru_ops(
i0=i0,
x=x,
h2=l1_h2,
layer='h1',
layer_idx=0)
# Intermediate FF
if self.batch_norm:
with tf.variable_scope(
'l1_h2_bn',
reuse=self.scope_reuse) as scope:
l1_h2 = tf.contrib.layers.batch_norm(
inputs=l1_h2,
scale=True,
center=True,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
# Pool the preceding layer's drive
if self.include_pooling:
processed_l1_h2 = max_pool3d(
bottom=l1_h2,
k=self.ff_pool_dhw[0],
s=self.ff_pool_strides[0],
name='ff_pool_%s' % 0)
else:
processed_l1_h2 = l1_h2
# LAYER 2
idx = 0
processed_l1_h2 = tf.nn.conv3d(
input=processed_l1_h2,
filter=getattr(self, 'ff_kernel_%s' % idx),
strides=self.ff_conv_strides[idx],
padding=self.padding)
processed_l1_h2 = tf.nn.bias_add(
processed_l1_h2,
getattr(self, 'ff_bias_%s' % idx))
processed_l1_h2 = self.ff_nl(processed_l1_h2)
if self.batch_norm:
with tf.variable_scope(
'l1_h2_bn_ff_%s' % idx,
reuse=self.scope_reuse) as scope:
processed_l1_h2 = tf.contrib.layers.batch_norm(
inputs=processed_l1_h2,
scale=True,
center=True,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
_, l2_h2 = self.hgru_ops(
i0=i0,
x=processed_l1_h2,
h2=l2_h2,
layer='h2',
layer_idx=1)
if self.batch_norm:
with tf.variable_scope(
'l2_h2_bn',
reuse=self.scope_reuse) as scope:
l2_h2 = tf.contrib.layers.batch_norm(
inputs=l2_h2,
scale=True,
center=True,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
# Pool the preceding layer's drive
if self.include_pooling:
processed_l2_h2 = max_pool3d(
bottom=l2_h2,
k=self.ff_pool_dhw[1],
s=self.ff_pool_strides[1],
name='ff_pool_%s' % idx)
else:
processed_l2_h2 = l2_h2
# LAYER 3
idx = 1
processed_l2_h2 = tf.nn.conv3d(
input=processed_l2_h2,
filter=getattr(self, 'ff_kernel_%s' % idx),
strides=self.ff_conv_strides[idx],
padding=self.padding)
processed_l2_h2 = tf.nn.bias_add(
processed_l2_h2,
getattr(self, 'ff_bias_%s' % idx))
processed_l2_h2 = self.ff_nl(processed_l2_h2)
if self.batch_norm:
with tf.variable_scope(
'l3_h2_bn_ff_%s' % idx,
reuse=self.scope_reuse) as scope:
processed_l2_h2 = tf.contrib.layers.batch_norm(
inputs=processed_l2_h2,
scale=True,
center=True,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
_, l3_h2 = self.hgru_ops(
i0=i0,
x=processed_l2_h2,
h2=l3_h2,
layer='h3',
layer_idx=1)
if self.batch_norm:
with tf.variable_scope(
'l3_h2_bn',
reuse=self.scope_reuse) as scope:
l3_h2 = tf.contrib.layers.batch_norm(
inputs=l3_h2,
scale=True,
center=True,
fused=True,
renorm=False,
param_initializers=self.param_initializer,
updates_collections=None,
scope=scope,
reuse=self.reuse,
is_training=self.train)
# l3-l2 feedback (FEEDBACK KERNEL is 2x channels)
_, temp_l2_h2 = self.hgru_ops(
i0=i0,
x=l2_h2,
h2=self.resize_x_to_y(x=l3_h2, y=l2_h2,
kernel=self.fb_kernel_1,
bias=self.fb_bias_1,
mode=self.fb_mode,
strides=self.ff_pool_strides[1]),
layer='fb2',
layer_idx=3)
# Peephole
if self.peephole:
l2_h2 = temp_l2_h2 + l2_h2
else:
l2_h2 = temp_l2_h2
# l2 horizontal postprocessing
_, l2_h2 = self.hgru_ops(
i0=i0,
x=l2_h2,
h2=l2_h2,
layer='h2',
layer_idx=1)
_, l2_h2 = self.hgru_ops(
i0=i0,
x=l2_h2,
h2=l2_h2,
layer='h2',
layer_idx=1)
# l2-l1 feedback (FEEDBACK KERNEL is 2x channels)
_, temp_l1_h2 = self.hgru_ops(
i0=i0,
x=l1_h2,
h2=self.resize_x_to_y(x=l2_h2, y=l1_h2,
kernel=self.fb_kernel_0,
bias=self.fb_bias_0,
mode=self.fb_mode,
strides=self.ff_pool_strides[0]),
layer='fb1',
layer_idx=4)
# Peephole
if self.peephole:
l1_h2 = temp_l1_h2 + l1_h2
else:
l1_h2 = temp_l1_h2
# l1 horizontal postprocessing
_, l1_h2 = self.hgru_ops(
i0=i0,
x=x,
h2=l1_h2,
layer='h1',
layer_idx=0)
_, l1_h2 = self.hgru_ops(
i0=i0,
x=x,
h2=l1_h2,
layer='h1',
layer_idx=0)
# Iterate loop
i0 += 1
return i0, x, l1_h2, l2_h2, l3_h2
def condition(self, i0, x, l1_h2, l2_h2, l3_h2):
"""While loop halting condition."""
return i0 < self.timesteps
def compute_shape(self, in_length, stride):
if in_length % stride == 0:
return in_length/stride
else:
return in_length/stride + 1
def build(self, x):
"""Run the backprop version of the Circuit."""
self.prepare_tensors()
i0 = tf.constant(0)
# Calculate l2 hidden state size
x_shape = x.get_shape().as_list()
if self.include_pooling and len(self.ff_conv_k):
if len(self.ff_conv_k):
final_dim = self.ff_conv_k[-1]
else:
final_dim = x_shape[-1]
l2_shape = [
x_shape[0],
self.compute_shape(x_shape[1], self.ff_pool_strides[0][0]),
self.compute_shape(x_shape[2], self.ff_pool_strides[0][1]),
self.compute_shape(x_shape[3], self.ff_pool_strides[0][2]),
final_dim]
l3_shape = [
x_shape[0],
self.compute_shape(l2_shape[1], self.ff_pool_strides[1][0]),
self.compute_shape(l2_shape[2], self.ff_pool_strides[1][1]),
self.compute_shape(l2_shape[3], self.ff_pool_strides[1][2]),
final_dim]
else:
l2_shape = tf.identity(x_shape)
# Initialize hidden layer activities
if self.hidden_init == 'identity':
l1_h2 = tf.identity(x)
l2_h2 = tf.zeros(l2_shape, dtype=self.dtype)
l3_h2 = tf.zeros(l3_shape, dtype=self.dtype)
elif self.hidden_init == 'random':
l1_h2 = tf.random_normal(x_shape, dtype=self.dtype)
l2_h2 = tf.random_normal(l2_shape, dtype=self.dtype)
l3_h2 = tf.random_normal(l3_shape, dtype=self.dtype)
elif self.hidden_init == 'zeros':
l1_h2 = tf.zeros(x_shape, dtype=self.dtype)
l2_h2 = tf.zeros(l2_shape, dtype=self.dtype)
l3_h2 = tf.zeros(l3_shape, dtype=self.dtype)
else:
raise RuntimeError
# While loop
elems = [
i0,
x,
l1_h2,
l2_h2,
l3_h2
]
returned = tf.while_loop(
self.condition,
self.full,
loop_vars=elems,
back_prop=True,
swap_memory=False)
# Prepare output
i0, x, l1_h2, l2_h2, l3_h2 = returned
return l1_h2
| [
"tensorflow.get_variable",
"tensorflow.zeros",
"tensorflow.minimum",
"tensorflow.get_default_graph",
"tensorflow.while_loop",
"tensorflow.gather",
"tensorflow.nn.conv3d_transpose",
"tensorflow.image.resize_images",
"tensorflow.identity",
"tensorflow.nn.conv3d",
"tensorflow.contrib.layers.batch_norm",
"tensorflow.nn.bias_add",
"tensorflow.constant",
"tensorflow.transpose",
"tensorflow.ones",
"tensorflow.constant_initializer",
"tensorflow.variable_scope",
"tensorflow.random_uniform",
"tensorflow.random_normal"
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taoshen58/ReSAN | f65f3fe656907be0ec14ddf18cd7d2608e7ef905 | import tensorflow as tf
from resan.utils.nn import bn_dense_layer, dropout, linear
from resan.utils.general import exp_mask_for_high_rank, mask_for_high_rank
from resan.rl_nn import reduce_data_rep_max_len
def reinforced_self_attention(
rep_tensor, rep_mask, dep_selection, head_selection,
hn=None, keep_unselected=True,
scope=None, keep_prob=1., is_train=None, wd=0., activation='elu'
):
with tf.variable_scope(scope or 'reinforced_self_attention'):
fw_result = directional_attention_with_selections(
rep_tensor, rep_mask, dep_selection, head_selection,
'forward', hn, keep_unselected,
'forward_resa', keep_prob, is_train, wd, activation
)
bw_result = directional_attention_with_selections(
rep_tensor, rep_mask, dep_selection, head_selection,
'backward', hn, keep_unselected,
'backward_resa', keep_prob, is_train, wd, activation
)
return tf.concat([fw_result, bw_result], -1)
def directional_attention_with_selections(
rep_tensor, rep_mask, dep_selection, head_selection, direction=None, hn=None, keep_unselected=True,
scope=None, keep_prob=1., is_train=None, wd=0., activation='elu'):
bs, sl, vec = tf.shape(rep_tensor)[0], tf.shape(rep_tensor)[1], tf.shape(rep_tensor)[2]
org_ivec = rep_tensor.get_shape().as_list()[2]
ivec = hn or org_ivec
with tf.variable_scope(scope or 'directional_attention_%s' % direction or 'diag'):
# non-linear
rep_map = bn_dense_layer(rep_tensor, ivec, True, 0., 'bn_dense_map', activation,
False, wd, keep_prob, is_train)
# ensure the seletion is right
dep_selection = tf.logical_and(rep_mask, dep_selection)
head_selection = tf.logical_and(rep_mask, head_selection)
rep_dep_tensor, rep_dep_mask, dep_org_idx = reduce_data_rep_max_len(rep_map, dep_selection)
rep_head_tensor,rep_head_mask, head_org_idx = reduce_data_rep_max_len(rep_map, head_selection)
sl_dep, sl_head = tf.shape(rep_dep_tensor)[1], tf.shape(rep_head_tensor)[1]
if keep_unselected:
unhead_selection = tf.logical_and(rep_mask, tf.logical_not(head_selection))
rep_unhead_tensor, rep_unhead_mask, unhead_org_idx = reduce_data_rep_max_len(rep_map, unhead_selection)
sl_unhead = tf.shape(rep_unhead_tensor)[1]
attn_result = tf.cond(
tf.equal(sl_head, 0),
lambda: tf.zeros([bs, 0, hn], tf.float32),
lambda: self_attention_for_selected_head(
head_selection, head_org_idx, sl_head, rep_head_mask,
dep_selection, dep_org_idx, sl_dep, rep_dep_mask,
rep_map, rep_dep_tensor, keep_prob, is_train, direction, ivec
)
)
if keep_unselected:
input_idx = tf.tile(tf.expand_dims(tf.range(sl), 0), [bs, 1])
pooling_result = tf.cond(
tf.equal(sl_unhead, 0),
lambda: tf.zeros([bs, 0, hn], tf.float32),
lambda: mean_pooling_for_unselected_head(
unhead_org_idx, sl_unhead, rep_unhead_mask,
input_idx, sl, rep_mask, rep_map, None) # todo: point !
)
with tf.variable_scope('output'):
if keep_unselected:
range_head = tf.tile(tf.expand_dims(tf.range(bs), -1), [1, sl_head])
scatter_attn = tf.cond(
tf.equal(sl_head, 0),
lambda: tf.zeros([bs, sl+1, hn], tf.float32),
lambda: tf.scatter_nd(
tf.stack([range_head, head_org_idx], -1), attn_result, [bs, sl+1, hn])
)
range_unhead = tf.tile(tf.expand_dims(tf.range(bs), -1), [1, sl_unhead])
scatter_pooling = tf.cond(
tf.equal(sl_unhead, 0),
lambda: tf.zeros([bs, sl+1, hn], tf.float32),
lambda: tf.scatter_nd(
tf.stack([range_unhead, unhead_org_idx], -1), pooling_result, [bs, sl+1, hn])
)
self_attn_input = rep_map
context_features = tf.add(scatter_attn[:, :-1], scatter_pooling[:, :-1], 'context_features')
output_mask = rep_mask
else:
self_attn_input = rep_head_tensor
context_features = attn_result
output_mask = rep_head_mask
# context fusion gate
o_bias = tf.get_variable('o_bias', [ivec], tf.float32, tf.constant_initializer(0.))
fusion_gate = tf.nn.sigmoid(
linear(self_attn_input, ivec, True, 0., 'linear_fusion_i', False, wd, keep_prob, is_train) +
linear(context_features, ivec, True, 0., 'linear_fusion_a', False, wd, keep_prob, is_train) +
o_bias)
output = fusion_gate * self_attn_input + (1 - fusion_gate) * context_features
return output, output_mask
def self_attention_for_selected_head(
head_selection, head_org_idx, sl_head, rep_head_mask,
dep_selection, dep_org_idx, sl_dep, rep_dep_mask,
rep_map, rep_dep_tensor, keep_prob, is_train, direction, ivec
):
# data for self-attention
rep_map_dp = dropout(rep_map, keep_prob, is_train)
rep_dep_tensor_dp, _, _ = reduce_data_rep_max_len(rep_map_dp, dep_selection)
rep_head_tensor_dp, _, _ = reduce_data_rep_max_len(rep_map_dp, head_selection)
# mask generation
dep_idxs = tf.tile(tf.expand_dims(dep_org_idx, 1), [1, sl_head, 1])
head_idxs = tf.tile(tf.expand_dims(head_org_idx, 2), [1, 1, sl_dep])
if direction is None:
direct_mask = tf.not_equal(head_idxs, dep_idxs) # [bs, slh, sld]
else:
if direction == 'forward':
direct_mask = tf.greater(head_idxs, dep_idxs) # [bs, slh, sld]
else:
direct_mask = tf.less(head_idxs, dep_idxs) # [bs, slh, sld]
# [bs, slh, slh]
rep_mask_tile = tf.logical_and(tf.expand_dims(rep_dep_mask, 1), tf.expand_dims(rep_head_mask, 2))
attn_mask = tf.logical_and(direct_mask, rep_mask_tile) # [bs, slh, sld]
# tensor tile
rep_map_tile = tf.tile(tf.expand_dims(rep_dep_tensor, 1), [1, sl_head, 1, 1]) # bs,slh,sld,vec
with tf.variable_scope('attention'): # bs,sl,sl,vec
f_bias = tf.get_variable('f_bias', [ivec], tf.float32, tf.constant_initializer(0.))
dependent = linear(rep_dep_tensor_dp, ivec, False, scope='linear_dependent') # bs,sld,vec
dependent_etd = tf.expand_dims(dependent, 1) # bs,1,sld,vec
head = linear(rep_head_tensor_dp, ivec, False, scope='linear_head') # bs,slh,vec
head_etd = tf.expand_dims(head, 2) # bs,slh,1,vec
logits = scaled_tanh(dependent_etd + head_etd + f_bias, 5.0) # bs,slh,sld,vec
logits_masked = exp_mask_for_high_rank(logits, attn_mask) # bs,slh,sld,vec
attn_score = tf.nn.softmax(logits_masked, 2) # bs,slh,sld,vec
attn_score = mask_for_high_rank(attn_score, attn_mask)
attn_result = tf.reduce_sum(attn_score * rep_map_tile, 2) # bs,slh,vec -> head_org_idx
return attn_result
def mean_pooling_for_unselected_head(
unhead_org_idx, sl_unhead, rep_unhead_mask,
dep_org_idx, sl_dep, rep_dep_mask,
rep_dep_tensor, direction
):
with tf.name_scope('pooling_for_un_head'):
undep_idxs = tf.tile(tf.expand_dims(dep_org_idx, 1), [1, sl_unhead, 1]) # [bs, sluh, sld]
unhead_idxs = tf.tile(tf.expand_dims(unhead_org_idx, 2), [1, 1, sl_dep]) # [bs, sluh, sld]
if direction is None:
direct_mask_un = tf.not_equal(unhead_idxs, undep_idxs) # [bs, sluh, sld]
else:
if direction == 'forward':
direct_mask_un = tf.greater(unhead_idxs, undep_idxs) # [bs, sluh, sld]
else:
direct_mask_un = tf.less(unhead_idxs, undep_idxs) # [bs, sluh, sld]
# [bs, sluh, sld]
rep_mask_tile_un = tf.logical_and(tf.expand_dims(rep_dep_mask, 1), tf.expand_dims(rep_unhead_mask, 2))
pooling_mask = tf.logical_and(direct_mask_un, rep_mask_tile_un) # [bs, sluh, sld]
# data for pooling
pooling_data = tf.tile(tf.expand_dims(rep_dep_tensor, 1), [1, sl_unhead, 1, 1]) # bs,sluh,sld,hn
# execute mean pooling based on pooling_mask[bs, sluh, sld] and pooling_data[bs,sluh,sld,hn]
pooling_data = mask_for_high_rank(pooling_data, pooling_mask) # [bs,sluh,sld,hn]
pooling_data_sum = tf.reduce_sum(pooling_data, -2) # [bs,sluh,hn]
pooling_den = tf.reduce_sum(tf.cast(pooling_mask, tf.int32), -1, keep_dims=True) # [bs,sluh]
pooling_den = tf.where(tf.equal(pooling_den, 0), tf.ones_like(pooling_den), pooling_den)
pooling_result = pooling_data_sum / tf.cast(pooling_den, tf.float32)
return pooling_result
def scaled_tanh(x, scale=5.):
return scale * tf.nn.tanh(1./scale * x) | [
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"tensorflow.reduce_sum",
"tensorflow.stack",
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"tensorflow.range",
"tensorflow.ones_like",
"tensorflow.expand_dims",
"tensorflow.constant_initializer",
"tensorflow.variable_scope",
"tensorflow.logical_and"
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agrawalayan/R-net-1 | 1748d108a8248466d99cdf3c3f284619d88bcc73 | from __future__ import print_function
import tensorflow as tf
from tensorflow.python.ops import variable_scope
from tensorflow.python.ops import nn_ops
def add_first_word_prob_to_atten_dists(in_passage_words, phrase_starts, vocab_dist, attn_dist):
'''
in_passage_words: [batch_size, passage_length]
phrase_starts: [batch_size, phrase_length]
vocab_dist: [batch_size, vsize]
attn_dist: [batch_size, phrase_length]
return: [batch_size, phrase_length]
'''
def singel_instance(x):
cur_passage_words = x[0] # [passage_length]
cur_phrase_starts = x[1] # [phrase_length]
cur_vocab_dist = x[2] # [vsize]
cur_attn_dist = x[3] # [passage_length]
# first: get the first word for each phrase
first_words = tf.gather(cur_passage_words, cur_phrase_starts) # [phrase_length]
# second: get the probs for each word
first_word_probs = tf.gather(cur_vocab_dist, first_words) # [phrase_length]
return cur_attn_dist + first_word_probs
elems = (in_passage_words, phrase_starts, vocab_dist, attn_dist)
return tf.map_fn(singel_instance, elems, dtype=tf.float32) # [batch_size, phrase_length]
class CovCopyAttenGen:
def __init__(self, placeholders, options, vocab):
self.options = options
self.vocab = vocab
self.cell = tf.contrib.rnn.LSTMCell(
options.gen_hidden_size,
initializer=tf.random_uniform_initializer(-0.1, 0.1, seed=113),
state_is_tuple=True)
self.placeholders = placeholders
with tf.variable_scope("embedding"), tf.device('/cpu:0'):
self.embedding = tf.get_variable('word_embedding', trainable=(options.fix_word_vec==False),
initializer=tf.constant(self.vocab.word_vecs), dtype=tf.float32)
if options.with_phrase_projection:
self.max_phrase_size = placeholders.max_phrase_size
if options.add_first_word_prob_for_phrase:
self.in_passage_words = placeholders.in_passage_words
self.phrase_starts = placeholders.phrase_starts
else:
self.max_phrase_size = None
def attention(self, decoder_state, attention_vec_size, encoder_states, encoder_features, passage_mask, v, w_c=None,
use_coverage=True, coverage=None):
'''
decoder_state: Tuple of [batch_size, gen_hidden_size]
encoder_states: [batch_size, passage_len, encoder_dim]
encoder_features: [batch_size,passage_len,attention_vec_size]
passage_mask: [batch_size, passage_len]
v: [1,1, attention_vec_size]
w_c: [1,1, attention_vec_size]
coverage: [batch_size, passage_len]
'''
with variable_scope.variable_scope("Attention"):
# Equation (11) in the paper
state_features = linear(decoder_state, attention_vec_size, True) # [batch_size, attention_vec_size]
state_features = tf.expand_dims(state_features, 1) # [batch_size, 1, attention_vec_size]
all_features = encoder_features + state_features # [batch_size,passage_len,attention_vec_size]
if use_coverage and coverage is not None:
coverage_features = tf.expand_dims(coverage, axis=-1) * w_c # [batch_size, passage_len, attention_vec_size]
all_features += coverage_features
e = tf.reduce_sum(v * tf.tanh(all_features), axis=-1) # [batch_size, passage_len]
attn_dist = nn_ops.softmax(e) # [batch_size, passage_len]
attn_dist *= passage_mask
if coverage is not None: # Update coverage vector
coverage += attn_dist
else: # first step of training
coverage = attn_dist
# Calculate the context vector from attn_dist and encoder_states
# shape (batch_size, attn_size).
context_vector = tf.reduce_sum(tf.expand_dims(attn_dist, axis=-1) * encoder_states, axis=1) # [batch_size, encoder_dim]
return context_vector, attn_dist, coverage
def embedding_lookup(self, inputs):
'''
inputs: list of [batch_size], int32
'''
if type(inputs) is list:
return [tf.nn.embedding_lookup(self.embedding, x) for x in inputs]
else:
return tf.nn.embedding_lookup(self.embedding, inputs)
def one_step_decoder(self, state_t_1, context_t_1, coverage_t_1, word_t, encoder_states, encoder_features,
passage_word_idx, passage_mask, v, w_c, vocab):
'''
state_t_1: Tuple of [batch_size, gen_hidden_size]
context_t_1: [batch_size, encoder_dim]
coverage_t_1: [batch_size, passage_len]
word_t: [batch_size, word_dim]
encoder_states: [batch_size, passage_len, encoder_dim]
encoder_features: [batch_size,attn_length,attention_vec_size]
passage_mask: [batch_size, passage_len]
v: [1,1, attention_vec_size]
w_c: [1,1, attention_vec_size]
'''
options = self.options
x = linear([word_t, context_t_1], options.attention_vec_size, True)
# Run the decoder RNN cell. cell_output = decoder state
cell_output, state_t = self.cell(x, state_t_1)
context_t, attn_dist, coverage_t = self.attention(state_t, options.attention_vec_size, encoder_states,
encoder_features, passage_mask, v, w_c=w_c,
use_coverage=options.use_coverage, coverage=coverage_t_1)
# Calculate p_gen, Equation (8)
if options.pointer_gen:
with tf.variable_scope('calculate_pgen'):
p_gen = linear([context_t, state_t.c, state_t.h, x], 1, True) # [batch_size, 1]
p_gen = tf.sigmoid(p_gen)
# Concatenate the cell_output (= decoder state) and the context vector, and pass them through a linear layer
# This is V[s_t, h*_t] + b in the paper
with variable_scope.variable_scope("AttnOutputProjection"):
output_t = linear([cell_output] + [context_t], options.gen_hidden_size, True)
with tf.variable_scope('output_projection'):
w = tf.get_variable('w', [options.gen_hidden_size, vocab.vocab_size+1], dtype=tf.float32)
b = tf.get_variable('b', [vocab.vocab_size +1], dtype=tf.float32)
# vocab_scores is the vocabulary distribution before applying softmax.
# Each entry on the list corresponds to one decoder step
vocab_score_t = tf.nn.xw_plus_b(output_t, w, b) # apply the linear layer
vocab_score_t = tf.nn.softmax(vocab_score_t)
# For pointer-generator model, calc final distribution from copy distribution and vocabulary distribution
if options.pointer_gen:
vocab_score_t = self.merge_prob_dist_for_one_step(vocab_score_t, attn_dist, p_gen, passage_word_idx, passage_mask)
vocab_score_t = _clip_and_normalize(vocab_score_t, 1e-6)
return (state_t, context_t, coverage_t, attn_dist, p_gen, vocab_score_t)
def train_mode(self, vocab, encoder_dim, encoder_states, encoder_features, passage_word_idx, passage_mask,
init_state, decoder_inputs, answer_batch, loss_weights, mode_gen='ce_train'):
'''
encoder_dim: int-valued
encoder_states: [batch_size, passage_len, encoder_dim].
passage_word_idx: [batch_size, passage_len] int32
passage_mask: [batch_size, passage_len] 0/1
init_state: Tuple of [batch_size, gen_hidden_size]
decoder_inputs: [batch_size, max_dec_steps].
answer_batch: [batch_size, max_dec_steps]
'''
options = self.options
input_shape = tf.shape(encoder_states)
batch_size = input_shape[0]
passage_len = input_shape[1]
# map decoder inputs to word embeddings
decoder_inputs = tf.unstack(decoder_inputs, axis=1) # max_enc_steps * [batch_size]
answer_batch_unstack = tf.unstack(answer_batch, axis=1)
# initialize all the variables
state_t_1 = init_state
context_t_1 = tf.zeros([batch_size, encoder_dim])
coverage_t_1 = None
# store variables from each time-step
coverages = []
attn_dists = []
p_gens = []
vocab_scores = []
sampled_words = []
self.encoder_features = encoder_features
with variable_scope.variable_scope("attention_decoder"):
# Get the weight vectors v and W_c (W_c is for coverage)
v = variable_scope.get_variable("v", [options.attention_vec_size])
v = tf.expand_dims(tf.expand_dims(v, axis=0), axis=0)
w_c = None
if options.use_coverage:
with variable_scope.variable_scope("coverage"):
w_c = variable_scope.get_variable("w_c", [options.attention_vec_size])
w_c = tf.expand_dims(tf.expand_dims(w_c, axis=0), axis=0)
# For each step, dec_input => lstm_output => vocab_score
wordidx_t = decoder_inputs[0] # [batch_size] int32
for i in range(options.max_answer_len):
if mode_gen in ('ce_train', 'loss',): wordidx_t = decoder_inputs[i] # the wordidx_t must from decoder_inputs for phrase model
word_t = self.embedding_lookup(wordidx_t)
if i > 0:
variable_scope.get_variable_scope().reuse_variables()
(state_t, context_t, coverage_t, attn_dist_t, p_gen_t, output_t) = self.one_step_decoder(
state_t_1, context_t_1, coverage_t_1, word_t, encoder_states, self.encoder_features,
passage_word_idx, passage_mask, v, w_c, vocab)
coverages.append(coverage_t)
attn_dists.append(attn_dist_t)
p_gens.append(p_gen_t)
vocab_scores.append(output_t) # The vocabulary distributions.
state_t_1 = state_t
context_t_1 = context_t
coverage_t_1 = coverage_t
if mode_gen == 'greedy':
wordidx_t = tf.argmax(output_t, 1) # [batch_size]
wordidx_t = tf.reshape(wordidx_t, [-1]) # [batch_size]
elif mode_gen == 'sample':
log_score_t = tf.log(output_t) # [batch_size, vsize]
wordidx_t = tf.multinomial(log_score_t, 1) # [batch_size, 1]
wordidx_t = tf.reshape(wordidx_t, [-1]) # [batch_size]
elif mode_gen in ('ce_train', 'loss',):
wordidx_t = answer_batch_unstack[i]
else:
assert False, 'unknown generating mode %s' % mode_gen
sampled_words.append(wordidx_t)
if len(sampled_words)!=0:
sampled_words = tf.stack(sampled_words, axis=1) # [batch_size, max_dec_steps]
vocab_scores = tf.stack(vocab_scores, axis=1) # [batch_size, max_dec_steps, vocab]
# calculating loss
self._loss = None
if mode_gen in ('ce_train', 'loss', ):
xent = CE_loss(vocab_scores, answer_batch, loss_weights) # [batch_size]
if mode_gen == 'loss': xent *= self.placeholders.reward # multiply with rewards
self._loss = tf.reduce_mean(xent)
# Calculate coverage loss from the attention distributions
if options.use_coverage:
with tf.variable_scope('coverage_loss'):
self._coverage_loss = _coverage_loss(attn_dists, loss_weights)
self._loss = self._loss + options.cov_loss_wt * self._coverage_loss
# accuracy is calculated only under 'ce_train', where true answer is given
if mode_gen == 'ce_train':
accuracy = _mask_and_accuracy(vocab_scores, answer_batch, loss_weights)
return accuracy, self._loss, sampled_words
else:
return None, self._loss, sampled_words
def calculate_encoder_features(self, encoder_states, encoder_dim):
options = self.options
input_shape = tf.shape(encoder_states)
batch_size = input_shape[0]
passage_len = input_shape[1]
with variable_scope.variable_scope("attention_decoder"):
encoder_features = tf.expand_dims(encoder_states, axis=2) # now is shape [batch_size, passage_len, 1, encoder_dim]
W_h = variable_scope.get_variable("W_h", [1, 1, encoder_dim, options.attention_vec_size])
self.W_h = W_h
encoder_features = nn_ops.conv2d(encoder_features, W_h, [1, 1, 1, 1], "SAME") # [batch_size, passage_len, 1, attention_vec_size]
encoder_features = tf.reshape(encoder_features, [batch_size, passage_len, options.attention_vec_size])
return encoder_features
def decode_mode(self, word_vocab, beam_size, state_t_1, context_t_1, coverage_t_1, word_t,
encoder_states, encoder_features, passage_word_idx, passage_mask):
options = self.options
with variable_scope.variable_scope("attention_decoder"):
v = variable_scope.get_variable("v", [options.attention_vec_size])
v = tf.expand_dims(tf.expand_dims(v, axis=0), axis=0)
w_c = None
if options.use_coverage:
with variable_scope.variable_scope("coverage"):
w_c = variable_scope.get_variable("w_c", [options.attention_vec_size])
w_c = tf.expand_dims(tf.expand_dims(w_c, axis=0), axis=0)
word_t_representation = self.embedding_lookup(word_t)
(state_t, context_t, coverage_t, attn_dist_t, p_gen_t, output_t) = self.one_step_decoder(
state_t_1, context_t_1, coverage_t_1, word_t_representation, encoder_states, encoder_features,
passage_word_idx, passage_mask, v, w_c, word_vocab)
vocab_scores = tf.log(output_t)
greedy_prediction = tf.reshape(tf.argmax(output_t, 1),[-1]) # calcualte greedy
multinomial_prediction = tf.reshape(tf.multinomial(vocab_scores, 1),[-1]) # calculate multinomial
topk_log_probs, topk_ids = tf.nn.top_k(vocab_scores, beam_size) # calculate topK
return (state_t, context_t, coverage_t, attn_dist_t, p_gen_t, output_t, topk_log_probs, topk_ids,
greedy_prediction, multinomial_prediction)
def merge_prob_dist_for_one_step(self, vocab_dist, attn_dist, p_gen, passage_word_idx, passage_mask=None):
'''
max_phrase_size: an input placehoder indications the maximum phrase size inside this batch
vocab_dist: [batch_size, vsize]
attn_dist: [batch_size, passage_length]
p_gen: [batch_size, 1]
passage_word_idx: [batch_size, passage_length]
passage_mask: [batch_size, passage_length]
'''
input_shape = tf.shape(vocab_dist)
batch_size = input_shape[0]
vsize = input_shape[1]
passage_length = tf.shape(passage_word_idx)[1]
with tf.variable_scope('final_distribution'):
vocab_dist = p_gen * vocab_dist
attn_dist = (1.0-p_gen) * attn_dist
# Concatenate some zeros to each vocabulary dist, to hold the probabilities for phrases
extended_vsize = vsize
if self.max_phrase_size is not None:
extended_vsize += self.max_phrase_size
extra_zeros = tf.zeros((batch_size, self.max_phrase_size))
vocab_dist = tf.concat(values=[vocab_dist, extra_zeros], axis=1) # [batch_size, extended_vsize]
if self.options.add_first_word_prob_for_phrase: # add prob of the first word to each phrase
attn_dist = add_first_word_prob_to_atten_dists(self.in_passage_words, self.phrase_starts,
vocab_dist, attn_dist)
# match attn_dist[batch_size, passage_length] to sparse one-hot representation [batch_size, passage_length, extended_vsize]
batch_nums = tf.range(0, limit=batch_size) # shape (batch_size)
batch_nums = tf.expand_dims(batch_nums, axis=1) # shape (batch_size, 1)
batch_nums = tf.tile(batch_nums, [1, passage_length]) # shape (batch_size, passage_length)
step_nums = tf.range(0, limit=passage_length) # [passage_length]
step_nums = tf.expand_dims(step_nums, axis=0) # shape (1, passage_length)
step_nums = tf.tile(step_nums, [batch_size, 1]) # shape (batch_size, passage_length)
indices = tf.stack((batch_nums, step_nums, passage_word_idx), axis=2) # shape (batch_size, passage_length, 3)
indices = tf.reshape(indices, [-1, 3]) #[batch_size * passage_length, 3]
indices = tf.cast(indices, tf.int64)
shape = [batch_size, passage_length, extended_vsize]
shape = tf.cast(shape, tf.int64)
attn_dist = tf.reshape(attn_dist, shape=[-1]) # [batch_size*passage_length]
one_hot_spare_rep = tf.SparseTensor(indices=indices, values=attn_dist, dense_shape=shape) # [batch_size, passage_length, extended_vsize]
if passage_mask is not None:
passage_mask = tf.expand_dims(passage_mask, axis=-1)
one_hot_spare_rep = one_hot_spare_rep * passage_mask
one_hot_spare_rep = tf.sparse_reduce_sum(one_hot_spare_rep, axis=1) # [batch_size, extended_vsize]
vocab_dist = tf.add(vocab_dist, one_hot_spare_rep)
if self.options.add_first_word_prob_for_phrase:
vocab_dist = tf.nn.softmax(vocab_dist) # normalize
return vocab_dist # [batch_size, extended_vsize]
def linear(args, output_size, bias=True, bias_start=0.0, scope=None):
if args is None or (isinstance(args, (list, tuple)) and not args):
raise ValueError("`args` must be specified")
if not isinstance(args, (list, tuple)):
args = [args]
# Calculate the total size of arguments on dimension 1.
total_arg_size = 0
shapes = [a.get_shape().as_list() for a in args]
for shape in shapes:
if len(shape) != 2:
raise ValueError("Linear is expecting 2D arguments: %s" % str(shapes))
if not shape[1]:
raise ValueError("Linear expects shape[1] of arguments: %s" % str(shapes))
else:
total_arg_size += shape[1]
# Now the computation.
with tf.variable_scope(scope or "Linear"):
matrix = tf.get_variable("Matrix", [total_arg_size, output_size])
if len(args) == 1:
res = tf.matmul(args[0], matrix)
else:
res = tf.matmul(tf.concat(values=args, axis=1), matrix)
if not bias:
return res
bias_term = tf.get_variable("Bias", [output_size], initializer=tf.constant_initializer(bias_start))
return res + bias_term
def _clip_and_normalize(word_probs, epsilon):
'''
word_probs: 1D tensor of [vsize]
'''
word_probs = tf.clip_by_value(word_probs, epsilon, 1.0 - epsilon)
return word_probs / tf.reduce_sum(word_probs, axis=-1, keep_dims=True) # scale preds so that the class probas of each sample sum to 1
def CE_loss(word_probs, answers, loss_weights):
'''
word_probs: [batch_size, max_dec_steps, vocab]
answers: [batch_size, max_dec_steps]
loss_weigts: [batch_size, max_dec_steps]
'''
#word_probs = tf.nn.softmax(word_probs, dim=-1)
input_shape = tf.shape(word_probs)
vsize = input_shape[2]
epsilon = 1.0e-6
word_probs = _clip_and_normalize(word_probs, epsilon)
one_hot_spare_rep = tf.one_hot(answers, vsize)
xent = -tf.reduce_sum(one_hot_spare_rep * tf.log(word_probs), axis=-1) # [batch_size, max_dec_steps]
if loss_weights != None:
xent = xent * loss_weights
xent = tf.reduce_sum(xent, axis=-1)
return xent #[batch_size]
def _mask_and_avg(values, loss_weights):
"""Applies mask to values then returns overall average (a scalar)
Args:
values: a list length max_dec_steps containing arrays shape (batch_size).
loss_weights: tensor shape (batch_size, max_dec_steps) containing 1s and 0s.
Returns:
a scalar
"""
if loss_weights == None:
return tf.reduce_mean(tf.stack(values, axis=0))
dec_lens = tf.reduce_sum(loss_weights, axis=1) # shape batch_size. float32
values_per_step = [v * loss_weights[:,dec_step] for dec_step,v in enumerate(values)]
values_per_ex = sum(values_per_step)/dec_lens # shape (batch_size); normalized value for each batch member
return tf.reduce_mean(values_per_ex) # overall average
def _coverage_loss(attn_dists, loss_weights):
"""Calculates the coverage loss from the attention distributions.
Args:
attn_dists: The attention distributions for each decoder timestep.
A list length max_dec_steps containing shape (batch_size, attn_length)
loss_weights: shape (batch_size, max_dec_steps).
Returns:
coverage_loss: scalar
"""
coverage = tf.zeros_like(attn_dists[0]) # shape (batch_size, attn_length). Initial coverage is zero.
covlosses = [] # Coverage loss per decoder timestep. Will be list length max_dec_steps containing shape (batch_size).
for a in attn_dists:
covloss = tf.reduce_sum(tf.minimum(a, coverage), [1]) # calculate the coverage loss for this step
covlosses.append(covloss)
coverage += a # update the coverage vector
coverage_loss = _mask_and_avg(covlosses, loss_weights)
return coverage_loss
# values: [batch_size, step_size, vocab_size]
# answers: [batch_size, step_size]
def _mask_and_accuracy(values, answers, loss_weights):
values = tf.argmax(values,axis=2)
x = tf.cast(values, dtype=tf.int32)
y = tf.cast(answers, dtype=tf.int32)
res = tf.equal(x, y)
res = tf.cast(res, dtype=tf.float32)
res = tf.multiply(res, loss_weights)
return tf.reduce_sum(res)
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"tensorflow.zeros",
"tensorflow.reduce_sum",
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"tensorflow.cast",
"tensorflow.equal",
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"tensorflow.SparseTensor",
"tensorflow.constant_initializer",
"tensorflow.log",
"tensorflow.variable_scope",
"tensorflow.multinomial"
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tensorflow as tf\n'), (192, 'tensorflow.python.ops.variable_scope.get_variable_scope', 'variable_scope.get_variable_scope', ([], {}), False, 'from tensorflow.python.ops import variable_scope\n')] |
jfacoustic/MyTwitterBot | 15a9509c41ba8c7049675048b4d05ab457270a7d | import tensorflow as tf
def init_wb(shape, name):
"""
Function initialize one matrix of weights and one bias vector.
:type shape: tuple
:type name: str
:rtype: dictionary
"""
Winit = tf.truncated_normal(shape, mean=0, stddev=0.1)
binit = tf.zeros(shape[-1])
layer = {}
layer["weights"] = tf.get_variable(name + "/weights",
dtype=tf.float32,
initializer=Winit)
layer["bias"] = tf.get_variable(name + "/bias",
dtype=tf.float32,
initializer=binit)
return layer
def affine_transformation(input_tensor, layer):
"""
Function that applies a affine transformation
in the input tensor using the variables
from the dict layer.
:type input_tensor: tf tensor
:type layer: dictionary
:rtype: tf tensor
"""
return tf.add(tf.matmul(input_tensor, layer['weights']),
layer['bias'])
| [
"tensorflow.get_variable",
"tensorflow.truncated_normal",
"tensorflow.matmul",
"tensorflow.zeros"
] | src/tftools/basic_functions.py | [(12, 'tensorflow.truncated_normal', 'tf.truncated_normal', (['shape'], {'mean': '(0)', 'stddev': '(0.1)'}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.zeros', 'tf.zeros', (['shape[-1]'], {}), True, 'import tensorflow as tf\n'), (15, 'tensorflow.get_variable', 'tf.get_variable', (["(name + '/weights')"], {'dtype': 'tf.float32', 'initializer': 'Winit'}), True, 'import tensorflow as tf\n'), (18, 'tensorflow.get_variable', 'tf.get_variable', (["(name + '/bias')"], {'dtype': 'tf.float32', 'initializer': 'binit'}), True, 'import tensorflow as tf\n'), (34, 'tensorflow.matmul', 'tf.matmul', (['input_tensor', "layer['weights']"], {}), True, 'import tensorflow as tf\n')] |
congchan/nnnlp | 9a2026a2577817d485d139bf442de7fd602418e6 | # coding=utf-8
"""GLUE tasks."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os
import time
import six
import json
import copy
import glue_utils as classifier_utils
import modeling
import optimization
import tokenization
import tensorflow as tf
from tensorflow.contrib import cluster_resolver as contrib_cluster_resolver
from tensorflow.contrib import tpu as contrib_tpu
from tensorflow.contrib import metrics as contrib_metrics
flags = tf.flags
FLAGS = flags.FLAGS
## Required parameters
flags.DEFINE_string(
"data_dir", None,
"The input data dir. Should contain the .tsv files (or other data files) "
"for the task.")
flags.DEFINE_string(
"config_file", None,
"The config json file corresponding to the pre-trained model. "
"This specifies the model architecture.")
flags.DEFINE_string("task_name", None, "The name of the task to train.")
flags.DEFINE_string(
"vocab_file", None,
"The vocabulary file that the model was trained on.")
flags.DEFINE_string(
"output_dir", None,
"The output directory where the model checkpoints will be written.")
flags.DEFINE_string("cached_dir", None,
"Path to cached training and dev tfrecord file. "
"The file will be generated if not exist.")
## Other parameters
flags.DEFINE_string(
"init_checkpoint", None,
"Initial checkpoint (usually from a pre-trained BERT model).")
# flags.DEFINE_string(
# "albert_hub_module_handle", None,
# "If set, the ALBERT hub module to use.")
flags.DEFINE_bool(
"do_lower_case", True,
"Whether to lower case the input text. Should be True for uncased "
"models and False for cased models.")
flags.DEFINE_integer(
"max_seq_length", 512,
"The maximum total input sequence length after WordPiece tokenization. "
"Sequences longer than this will be truncated, and sequences shorter "
"than this will be padded.")
flags.DEFINE_bool("do_train", False, "Whether to run training.")
flags.DEFINE_bool("do_eval", False, "Whether to run eval on the dev set.")
flags.DEFINE_bool(
"do_predict", False,
"Whether to run the model in inference mode on the test set.")
flags.DEFINE_integer("train_batch_size", 32, "Total batch size for training.")
flags.DEFINE_integer("eval_batch_size", 8, "Total batch size for eval.")
flags.DEFINE_integer("predict_batch_size", 8, "Total batch size for predict.")
flags.DEFINE_float("learning_rate", 5e-5, "The initial learning rate for Adam.")
flags.DEFINE_integer("train_step", 1000,
"Total number of training steps to perform.")
flags.DEFINE_integer(
"warmup_step", 0,
"number of steps to perform linear learning rate warmup for.")
flags.DEFINE_integer("save_checkpoints_steps", 1000,
"How often to save the model checkpoint.")
flags.DEFINE_integer("keep_checkpoint_max", 5,
"How many checkpoints to keep.")
flags.DEFINE_integer("iterations_per_loop", 1000,
"How many steps to make in each estimator call.")
flags.DEFINE_bool("use_tpu", False, "Whether to use TPU or GPU/CPU.")
flags.DEFINE_string("optimizer", "adamw", "Optimizer to use")
tf.flags.DEFINE_string(
"tpu_name", None,
"The Cloud TPU to use for training. This should be either the name "
"used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 "
"url.")
tf.flags.DEFINE_string(
"tpu_zone", None,
"[Optional] GCE zone where the Cloud TPU is located in. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string(
"gcp_project", None,
"[Optional] Project name for the Cloud TPU-enabled project. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string("master", None, "[Optional] TensorFlow master URL.")
flags.DEFINE_integer(
"num_tpu_cores", 8,
"Only used if `use_tpu` is True. Total number of TPU cores to use.")
class Config(object):
"""Configuration."""
def __init__(self,
vocab_size,
embedding_size=128,
hidden_size=4096,
num_hidden_layers=12,
num_hidden_groups=1,
num_attention_heads=64,
intermediate_size=16384,
inner_group_num=1,
down_scale_factor=1,
hidden_act="gelu",
hidden_dropout_prob=0,
attention_probs_dropout_prob=0,
max_position_embeddings=512,
type_vocab_size=2,
initializer_range=0.02,
num_bilstm=1,
lstm_size=128,
bilstm_dropout_rate=0.2):
"""Constructs Config.
Args:
vocab_size: Vocabulary size of `inputs_ids` in `Model`.
embedding_size: size of voc embeddings.
hidden_size: Size of the encoder layers and the pooler layer.
num_hidden_layers: Number of hidden layers in the Transformer encoder.
num_hidden_groups: Number of group for the hidden layers, parameters in
the same group are shared.
num_attention_heads: Number of attention heads for each attention layer in
the Transformer encoder.
intermediate_size: The size of the "intermediate" (i.e., feed-forward)
layer in the Transformer encoder.
inner_group_num: int, number of inner repetition of attention and ffn.
down_scale_factor: float, the scale to apply
hidden_act: The non-linear activation function (function or string) in the
encoder and pooler.
hidden_dropout_prob: The dropout probability for all fully connected
layers in the embeddings, encoder, and pooler.
attention_probs_dropout_prob: The dropout ratio for the attention
probabilities.
max_position_embeddings: The maximum sequence length that this model might
ever be used with. Typically set this to something large just in case
(e.g., 512 or 1024 or 2048).
type_vocab_size: The vocabulary size of the `token_type_ids` passed into
`Model`.
initializer_range: The stdev of the truncated_normal_initializer for
initializing all weight matrices.
num_bilstm: The number of bilstm layer.
lstm_size: The hidden size of bilstm state.
bilstm_dropout_rate: The dropout rate of bilstm.
"""
self.vocab_size = vocab_size
self.embedding_size = embedding_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_hidden_groups = num_hidden_groups
self.num_attention_heads = num_attention_heads
self.inner_group_num = inner_group_num
self.down_scale_factor = down_scale_factor
self.hidden_act = hidden_act
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.initializer_range = initializer_range
self.num_bilstm=num_bilstm
self.lstm_size=lstm_size
self.bilstm_dropout_rate=bilstm_dropout_rate
@classmethod
def from_dict(cls, json_object):
"""Constructs a `Config` from a Python dictionary of parameters."""
config = Config(vocab_size=None)
for (key, value) in six.iteritems(json_object):
config.__dict__[key] = value
return config
@classmethod
def from_json_file(cls, json_file):
"""Constructs a `Config` from a json file of parameters."""
with tf.gfile.GFile(json_file, "r") as reader:
text = reader.read()
return cls.from_dict(json.loads(text))
def to_dict(self):
"""Serializes this instance to a Python dictionary."""
output = copy.deepcopy(self.__dict__)
return output
def to_json_string(self):
"""Serializes this instance to a JSON string."""
return json.dumps(self.to_dict(), indent=2, sort_keys=True) + "\n"
def create_model(config, is_training, input_ids, input_mask, segment_ids,
labels, num_labels, use_one_hot_embeddings, task_name,):
"""Creates a classification model from_scratch."""
_true_length = tf.cast(tf.reduce_sum(input_mask, axis=-1), dtype=tf.int32)
with tf.variable_scope("baseline"):
with tf.variable_scope("embeddings"):
# Perform embedding lookup on the word ids.
(word_embedding_output,
output_embedding_table) = modeling.embedding_lookup(
input_ids=input_ids,
vocab_size=config.vocab_size,
embedding_size=config.embedding_size,
initializer_range=config.initializer_range,
word_embedding_name="word_embeddings",
use_one_hot_embeddings=use_one_hot_embeddings)
# Add positional embeddings and token type embeddings, then layer
# normalize and perform dropout.
embedding_output = modeling.embedding_postprocessor(
input_tensor=word_embedding_output,
use_token_type=True,
token_type_ids=segment_ids,
token_type_vocab_size=config.type_vocab_size,
token_type_embedding_name="token_type_embeddings",
use_position_embeddings=True,
position_embedding_name="position_embeddings",
initializer_range=config.initializer_range,
max_position_embeddings=config.max_position_embeddings,
dropout_prob=config.hidden_dropout_prob)
with tf.variable_scope("bilstm"):
sequence_output = modeling.bilstm_fused(
inputs=embedding_output,
sequence_lengths=_true_length,
lstm_size=config.lstm_size,
bilstm_dropout_rate=config.bilstm_dropout_rate,
is_training=is_training,
num_layers=config.num_bilstm)
# with tf.variable_scope("bilstm"):
# sequence_output, _ = modeling.cudnn_rnn(
# inputs=embedding_output,
# sequence_lengths=_true_length,
# rnn_size=config.lstm_size,
# dropout=config.bilstm_dropout_rate,
# is_training=is_training,
# num_layers=config.num_bilstm,
# direction='bidirectional')
# first_token_tensor = tf.squeeze(sequence_output[:, -1:, :], axis=1)
last_token_tensor = tf.squeeze(sequence_output[:, -1:, :], axis=1)
output_layer = tf.layers.dense(
last_token_tensor,
config.hidden_size,
activation=tf.tanh,
kernel_initializer=modeling.create_initializer(config.initializer_range))
hidden_size = output_layer.shape[-1].value
output_weights = tf.get_variable(
"output_weights", [num_labels, hidden_size],
initializer=tf.truncated_normal_initializer(stddev=0.02))
output_bias = tf.get_variable(
"output_bias", [num_labels], initializer=tf.zeros_initializer())
with tf.variable_scope("loss"):
if is_training:
# I.e., 0.1 dropout
output_layer = tf.nn.dropout(output_layer, keep_prob=0.9)
logits = tf.matmul(output_layer, output_weights, transpose_b=True)
logits = tf.nn.bias_add(logits, output_bias)
if task_name != "sts-b":
probabilities = tf.nn.softmax(logits, axis=-1)
predictions = tf.argmax(probabilities, axis=-1, output_type=tf.int32)
log_probs = tf.nn.log_softmax(logits, axis=-1)
one_hot_labels = tf.one_hot(labels, depth=num_labels, dtype=tf.float32)
per_example_loss = -tf.reduce_sum(one_hot_labels * log_probs, axis=-1)
else:
probabilities = logits
logits = tf.squeeze(logits, [-1])
predictions = logits
per_example_loss = tf.square(logits - labels)
loss = tf.reduce_mean(per_example_loss)
return (loss, per_example_loss, probabilities, logits, predictions)
def model_fn_builder(config, num_labels, init_checkpoint, learning_rate,
num_train_steps, num_warmup_steps, use_tpu,
use_one_hot_embeddings, task_name,
optimizer="adamw"):
"""Returns `model_fn` closure for TPUEstimator."""
def model_fn(features, labels, mode, params): # pylint: disable=unused-argument
"""The `model_fn` for TPUEstimator."""
tf.logging.info("*** Features ***")
for name in sorted(features.keys()):
tf.logging.info(" name = %s, shape = %s" % (name, features[name].shape))
input_ids = features["input_ids"]
input_mask = features["input_mask"]
segment_ids = features["segment_ids"]
label_ids = features["label_ids"]
is_real_example = None
if "is_real_example" in features:
is_real_example = tf.cast(features["is_real_example"], dtype=tf.float32)
else:
is_real_example = tf.ones(tf.shape(label_ids), dtype=tf.float32)
is_training = (mode == tf.estimator.ModeKeys.TRAIN)
(total_loss, per_example_loss, probabilities, logits, predictions) = \
create_model(config, is_training, input_ids, input_mask,
segment_ids, label_ids, num_labels,
use_one_hot_embeddings, task_name)
tvars = tf.trainable_variables()
initialized_variable_names = {}
scaffold_fn = None
if init_checkpoint:
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
if use_tpu:
def tpu_scaffold():
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
return tf.train.Scaffold()
scaffold_fn = tpu_scaffold
else:
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
tf.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
tf.logging.info(" name = %s, shape = %s%s", var.name, var.shape,
init_string)
output_spec = None
if mode == tf.estimator.ModeKeys.TRAIN:
train_op = optimization.create_optimizer(
total_loss, learning_rate, num_train_steps, num_warmup_steps,
use_tpu, optimizer)
output_spec = contrib_tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
scaffold_fn=scaffold_fn)
elif mode == tf.estimator.ModeKeys.EVAL:
if task_name not in ["sts-b", "cola"]:
def metric_fn(per_example_loss, label_ids, logits, is_real_example):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
accuracy = tf.metrics.accuracy(
labels=label_ids, predictions=predictions,
weights=is_real_example)
loss = tf.metrics.mean(
values=per_example_loss, weights=is_real_example)
return {
"eval_accuracy": accuracy,
"eval_loss": loss,
}
elif task_name == "sts-b":
def metric_fn(per_example_loss, label_ids, logits, is_real_example):
"""Compute Pearson correlations for STS-B."""
# Display labels and predictions
concat1 = contrib_metrics.streaming_concat(logits)
concat2 = contrib_metrics.streaming_concat(label_ids)
# Compute Pearson correlation
pearson = contrib_metrics.streaming_pearson_correlation(
logits, label_ids, weights=is_real_example)
# Compute MSE
# mse = tf.metrics.mean(per_example_loss)
mse = tf.metrics.mean_squared_error(
label_ids, logits, weights=is_real_example)
loss = tf.metrics.mean(
values=per_example_loss,
weights=is_real_example)
return {"pred": concat1, "label_ids": concat2, "pearson": pearson,
"MSE": mse, "eval_loss": loss,}
elif task_name == "cola":
def metric_fn(per_example_loss, label_ids, logits, is_real_example):
"""Compute Matthew's correlations for STS-B."""
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
# https://en.wikipedia.org/wiki/Matthews_correlation_coefficient
tp, tp_op = tf.metrics.true_positives(
predictions, label_ids, weights=is_real_example)
tn, tn_op = tf.metrics.true_negatives(
predictions, label_ids, weights=is_real_example)
fp, fp_op = tf.metrics.false_positives(
predictions, label_ids, weights=is_real_example)
fn, fn_op = tf.metrics.false_negatives(
predictions, label_ids, weights=is_real_example)
# Compute Matthew's correlation
mcc = tf.div_no_nan(
tp * tn - fp * fn,
tf.pow((tp + fp) * (tp + fn) * (tn + fp) * (tn + fn), 0.5))
# Compute accuracy
accuracy = tf.metrics.accuracy(
labels=label_ids, predictions=predictions,
weights=is_real_example)
loss = tf.metrics.mean(
values=per_example_loss,
weights=is_real_example)
return {"matthew_corr": (mcc, tf.group(tp_op, tn_op, fp_op, fn_op)),
"eval_accuracy": accuracy, "eval_loss": loss,}
eval_metrics = (metric_fn,
[per_example_loss, label_ids, logits, is_real_example])
output_spec = contrib_tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
eval_metrics=eval_metrics,
scaffold_fn=scaffold_fn)
else:
output_spec = contrib_tpu.TPUEstimatorSpec(
mode=mode,
predictions={
"probabilities": probabilities,
"predictions": predictions
},
scaffold_fn=scaffold_fn)
return output_spec
return model_fn
# This function is not used by this file but is still used by the Colab and
# people who depend on it.
def input_fn_builder(features, seq_length, is_training, drop_remainder):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
all_input_ids = []
all_input_mask = []
all_segment_ids = []
all_label_ids = []
for feature in features:
all_input_ids.append(feature.input_ids)
all_input_mask.append(feature.input_mask)
all_segment_ids.append(feature.segment_ids)
all_label_ids.append(feature.label_id)
def input_fn(params):
"""The actual input function."""
batch_size = params["batch_size"]
num_examples = len(features)
# This is for demo purposes and does NOT scale to large data sets. We do
# not use Dataset.from_generator() because that uses tf.py_func which is
# not TPU compatible. The right way to load data is with TFRecordReader.
d = tf.data.Dataset.from_tensor_slices({
"input_ids":
tf.constant(
all_input_ids, shape=[num_examples, seq_length],
dtype=tf.int32),
"input_mask":
tf.constant(
all_input_mask,
shape=[num_examples, seq_length],
dtype=tf.int32),
"segment_ids":
tf.constant(
all_segment_ids,
shape=[num_examples, seq_length],
dtype=tf.int32),
"label_ids":
tf.constant(all_label_ids, shape=[num_examples], dtype=tf.int32),
})
if is_training:
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.batch(batch_size=batch_size, drop_remainder=drop_remainder)
return d
return input_fn
def main(_):
tf.logging.set_verbosity(tf.logging.INFO)
processors = {
"cola": classifier_utils.ColaProcessor,
"mnli": classifier_utils.MnliProcessor,
"mismnli": classifier_utils.MisMnliProcessor,
"mrpc": classifier_utils.MrpcProcessor,
"rte": classifier_utils.RteProcessor,
"sst-2": classifier_utils.Sst2Processor,
"sts-b": classifier_utils.StsbProcessor,
"qqp": classifier_utils.QqpProcessor,
"qnli": classifier_utils.QnliProcessor,
"wnli": classifier_utils.WnliProcessor,
}
tokenization.validate_case_matches_checkpoint(FLAGS.do_lower_case,
FLAGS.init_checkpoint)
if not FLAGS.do_train and not FLAGS.do_eval and not FLAGS.do_predict:
raise ValueError(
"At least one of `do_train`, `do_eval` or `do_predict' must be True.")
# if not FLAGS.config_file and not FLAGS.albert_hub_module_handle:
# raise ValueError("At least one of `--config_file` and "
# "`--albert_hub_module_handle` must be set")
if FLAGS.config_file:
config = Config.from_json_file(
FLAGS.config_file)
if FLAGS.max_seq_length > config.max_position_embeddings:
raise ValueError(
"Cannot use sequence length %d because the model "
"was only trained up to sequence length %d" %
(FLAGS.max_seq_length, config.max_position_embeddings))
else:
config = None # Get the config from TF-Hub.
tf.gfile.MakeDirs(FLAGS.output_dir)
task_name = FLAGS.task_name.lower()
if task_name not in processors:
raise ValueError("Task not found: %s" % (task_name))
processor = processors[task_name](
do_lower_case=FLAGS.do_lower_case)
label_list = processor.get_labels()
tokenizer = tokenization.FullTokenizer(
vocab_file=FLAGS.vocab_file, do_lower_case=FLAGS.do_lower_case)
tpu_cluster_resolver = None
if FLAGS.use_tpu and FLAGS.tpu_name:
tpu_cluster_resolver = contrib_cluster_resolver.TPUClusterResolver(
FLAGS.tpu_name, zone=FLAGS.tpu_zone, project=FLAGS.gcp_project)
is_per_host = contrib_tpu.InputPipelineConfig.PER_HOST_V2
if FLAGS.do_train:
iterations_per_loop = int(min(FLAGS.iterations_per_loop,
FLAGS.save_checkpoints_steps))
else:
iterations_per_loop = FLAGS.iterations_per_loop
run_config = contrib_tpu.RunConfig(
cluster=tpu_cluster_resolver,
master=FLAGS.master,
model_dir=FLAGS.output_dir,
save_checkpoints_steps=int(FLAGS.save_checkpoints_steps),
keep_checkpoint_max=0,
tpu_config=contrib_tpu.TPUConfig(
iterations_per_loop=iterations_per_loop,
num_shards=FLAGS.num_tpu_cores,
per_host_input_for_training=is_per_host))
train_examples = None
if FLAGS.do_train:
train_examples = processor.get_train_examples(FLAGS.data_dir)
model_fn = model_fn_builder(
config=config,
num_labels=len(label_list),
init_checkpoint=FLAGS.init_checkpoint,
learning_rate=FLAGS.learning_rate,
num_train_steps=FLAGS.train_step,
num_warmup_steps=FLAGS.warmup_step,
use_tpu=FLAGS.use_tpu,
use_one_hot_embeddings=FLAGS.use_tpu,
task_name=task_name,
optimizer=FLAGS.optimizer)
# If TPU is not available, this will fall back to normal Estimator on CPU
# or GPU.
estimator = contrib_tpu.TPUEstimator(
use_tpu=FLAGS.use_tpu,
model_fn=model_fn,
config=run_config,
train_batch_size=FLAGS.train_batch_size,
eval_batch_size=FLAGS.eval_batch_size,
predict_batch_size=FLAGS.predict_batch_size)
if FLAGS.do_train:
cached_dir = FLAGS.cached_dir
if not cached_dir:
cached_dir = FLAGS.output_dir
train_file = os.path.join(cached_dir, task_name + "_train.tf_record")
if not tf.gfile.Exists(train_file):
classifier_utils.file_based_convert_examples_to_features(
train_examples, label_list, FLAGS.max_seq_length, tokenizer,
train_file, task_name)
tf.logging.info("***** Running training *****")
tf.logging.info(" Num examples = %d", len(train_examples))
tf.logging.info(" Batch size = %d", FLAGS.train_batch_size)
tf.logging.info(" Num steps = %d", FLAGS.train_step)
train_input_fn = classifier_utils.file_based_input_fn_builder(
input_file=train_file,
seq_length=FLAGS.max_seq_length,
is_training=True,
drop_remainder=True,
task_name=task_name,
use_tpu=FLAGS.use_tpu,
bsz=FLAGS.train_batch_size)
estimator.train(input_fn=train_input_fn, max_steps=FLAGS.train_step)
if FLAGS.do_eval:
eval_examples = processor.get_dev_examples(FLAGS.data_dir)
num_actual_eval_examples = len(eval_examples)
if FLAGS.use_tpu:
# TPU requires a fixed batch size for all batches, therefore the number
# of examples must be a multiple of the batch size, or else examples
# will get dropped. So we pad with fake examples which are ignored
# later on. These do NOT count towards the metric (all tf.metrics
# support a per-instance weight, and these get a weight of 0.0).
while len(eval_examples) % FLAGS.eval_batch_size != 0:
eval_examples.append(classifier_utils.PaddingInputExample())
cached_dir = FLAGS.cached_dir
if not cached_dir:
cached_dir = FLAGS.output_dir
eval_file = os.path.join(cached_dir, task_name + "_eval.tf_record")
if not tf.gfile.Exists(eval_file):
classifier_utils.file_based_convert_examples_to_features(
eval_examples, label_list, FLAGS.max_seq_length, tokenizer,
eval_file, task_name)
tf.logging.info("***** Running evaluation *****")
tf.logging.info(" Num examples = %d (%d actual, %d padding)",
len(eval_examples), num_actual_eval_examples,
len(eval_examples) - num_actual_eval_examples)
tf.logging.info(" Batch size = %d", FLAGS.eval_batch_size)
# This tells the estimator to run through the entire set.
eval_steps = None
# However, if running eval on the TPU, you will need to specify the
# number of steps.
if FLAGS.use_tpu:
assert len(eval_examples) % FLAGS.eval_batch_size == 0
eval_steps = int(len(eval_examples) // FLAGS.eval_batch_size)
eval_drop_remainder = True if FLAGS.use_tpu else False
eval_input_fn = classifier_utils.file_based_input_fn_builder(
input_file=eval_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=eval_drop_remainder,
task_name=task_name,
use_tpu=FLAGS.use_tpu,
bsz=FLAGS.eval_batch_size)
best_trial_info_file = os.path.join(FLAGS.output_dir, "best_trial.txt")
def _best_trial_info():
"""Returns information about which checkpoints have been evaled so far."""
if tf.gfile.Exists(best_trial_info_file):
with tf.gfile.GFile(best_trial_info_file, "r") as best_info:
global_step, best_metric_global_step, metric_value = (
best_info.read().split(":"))
global_step = int(global_step)
best_metric_global_step = int(best_metric_global_step)
metric_value = float(metric_value)
else:
metric_value = -1
best_metric_global_step = -1
global_step = -1
tf.logging.info(
"Best trial info: Step: %s, Best Value Step: %s, "
"Best Value: %s", global_step, best_metric_global_step, metric_value)
return global_step, best_metric_global_step, metric_value
def _remove_checkpoint(checkpoint_path):
for ext in ["meta", "data-00000-of-00001", "index"]:
src_ckpt = checkpoint_path + ".{}".format(ext)
tf.logging.info("removing {}".format(src_ckpt))
tf.gfile.Remove(src_ckpt)
def _find_valid_cands(curr_step):
filenames = tf.gfile.ListDirectory(FLAGS.output_dir)
candidates = []
for filename in filenames:
if filename.endswith(".index"):
ckpt_name = filename[:-6]
idx = ckpt_name.split("-")[-1]
if int(idx) > curr_step:
candidates.append(filename)
return candidates
output_eval_file = os.path.join(FLAGS.output_dir, "eval_results.txt")
if task_name == "sts-b":
key_name = "pearson"
elif task_name == "cola":
key_name = "matthew_corr"
else:
key_name = "eval_accuracy"
global_step, best_perf_global_step, best_perf = _best_trial_info()
writer = tf.gfile.GFile(output_eval_file, "w")
while global_step < FLAGS.train_step:
steps_and_files = {}
filenames = tf.gfile.ListDirectory(FLAGS.output_dir)
for filename in filenames:
if filename.endswith(".index"):
ckpt_name = filename[:-6]
cur_filename = os.path.join(FLAGS.output_dir, ckpt_name)
gstep = int(cur_filename.split("-")[-1])
if gstep not in steps_and_files:
tf.logging.info("Add {} to eval list.".format(cur_filename))
steps_and_files[gstep] = cur_filename
tf.logging.info("found {} files.".format(len(steps_and_files)))
if not steps_and_files:
tf.logging.info("found 0 file, global step: {}. Sleeping."
.format(global_step))
time.sleep(60)
else:
for checkpoint in sorted(steps_and_files.items()):
step, checkpoint_path = checkpoint
if global_step >= step:
if (best_perf_global_step != step and
len(_find_valid_cands(step)) > 1):
_remove_checkpoint(checkpoint_path)
continue
result = estimator.evaluate(
input_fn=eval_input_fn,
steps=eval_steps,
checkpoint_path=checkpoint_path)
global_step = result["global_step"]
tf.logging.info("***** Eval results *****")
for key in sorted(result.keys()):
tf.logging.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
writer.write("best = {}\n".format(best_perf))
if result[key_name] > best_perf:
best_perf = result[key_name]
best_perf_global_step = global_step
elif len(_find_valid_cands(global_step)) > 1:
_remove_checkpoint(checkpoint_path)
writer.write("=" * 50 + "\n")
writer.flush()
with tf.gfile.GFile(best_trial_info_file, "w") as best_info:
best_info.write("{}:{}:{}".format(
global_step, best_perf_global_step, best_perf))
writer.close()
for ext in ["meta", "data-00000-of-00001", "index"]:
src_ckpt = "model.ckpt-{}.{}".format(best_perf_global_step, ext)
tgt_ckpt = "model.ckpt-best.{}".format(ext)
tf.logging.info("saving {} to {}".format(src_ckpt, tgt_ckpt))
tf.io.gfile.rename(
os.path.join(FLAGS.output_dir, src_ckpt),
os.path.join(FLAGS.output_dir, tgt_ckpt),
overwrite=True)
if FLAGS.do_predict:
predict_examples = processor.get_test_examples(FLAGS.data_dir)
num_actual_predict_examples = len(predict_examples)
if FLAGS.use_tpu:
# TPU requires a fixed batch size for all batches, therefore the number
# of examples must be a multiple of the batch size, or else examples
# will get dropped. So we pad with fake examples which are ignored
# later on.
while len(predict_examples) % FLAGS.predict_batch_size != 0:
predict_examples.append(classifier_utils.PaddingInputExample())
predict_file = os.path.join(FLAGS.output_dir, "predict.tf_record")
classifier_utils.file_based_convert_examples_to_features(
predict_examples, label_list,
FLAGS.max_seq_length, tokenizer,
predict_file, task_name)
tf.logging.info("***** Running prediction*****")
tf.logging.info(" Num examples = %d (%d actual, %d padding)",
len(predict_examples), num_actual_predict_examples,
len(predict_examples) - num_actual_predict_examples)
tf.logging.info(" Batch size = %d", FLAGS.predict_batch_size)
predict_drop_remainder = True if FLAGS.use_tpu else False
predict_input_fn = classifier_utils.file_based_input_fn_builder(
input_file=predict_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=predict_drop_remainder,
task_name=task_name,
use_tpu=FLAGS.use_tpu,
bsz=FLAGS.predict_batch_size)
checkpoint_path = os.path.join(FLAGS.output_dir, "model.ckpt-best")
result = estimator.predict(
input_fn=predict_input_fn,
checkpoint_path=checkpoint_path)
output_predict_file = os.path.join(FLAGS.output_dir, "test_results.tsv")
output_submit_file = os.path.join(FLAGS.output_dir, "submit_results.tsv")
with tf.gfile.GFile(output_predict_file, "w") as pred_writer,\
tf.gfile.GFile(output_submit_file, "w") as sub_writer:
sub_writer.write("index" + "\t" + "prediction\n")
num_written_lines = 0
tf.logging.info("***** Predict results *****")
for (i, (example, prediction)) in\
enumerate(zip(predict_examples, result)):
probabilities = prediction["probabilities"]
if i >= num_actual_predict_examples:
break
output_line = "\t".join(
str(class_probability)
for class_probability in probabilities) + "\n"
pred_writer.write(output_line)
if task_name != "sts-b":
actual_label = label_list[int(prediction["predictions"])]
else:
actual_label = str(prediction["predictions"])
sub_writer.write(example.guid + "\t" + actual_label + "\n")
num_written_lines += 1
assert num_written_lines == num_actual_predict_examples
if __name__ == "__main__":
flags.mark_flag_as_required("data_dir")
flags.mark_flag_as_required("task_name")
flags.mark_flag_as_required("output_dir")
tf.app.run()
| [
"tensorflow.contrib.cluster_resolver.TPUClusterResolver",
"tensorflow.metrics.true_negatives",
"tensorflow.metrics.accuracy",
"tensorflow.nn.log_softmax",
"tensorflow.gfile.Exists",
"tensorflow.reduce_sum",
"tensorflow.gfile.GFile",
"tensorflow.cast",
"tensorflow.train.init_from_checkpoint",
"tensorflow.gfile.MakeDirs",
"tensorflow.group",
"tensorflow.contrib.tpu.TPUEstimatorSpec",
"tensorflow.contrib.tpu.TPUEstimator",
"tensorflow.squeeze",
"tensorflow.truncated_normal_initializer",
"tensorflow.metrics.false_positives",
"tensorflow.contrib.metrics.streaming_pearson_correlation",
"tensorflow.logging.set_verbosity",
"tensorflow.square",
"tensorflow.gfile.Remove",
"tensorflow.trainable_variables",
"tensorflow.argmax",
"tensorflow.nn.dropout",
"tensorflow.app.run",
"tensorflow.gfile.ListDirectory",
"tensorflow.matmul",
"tensorflow.metrics.mean",
"tensorflow.shape",
"tensorflow.pow",
"tensorflow.zeros_initializer",
"tensorflow.logging.info",
"tensorflow.one_hot",
"tensorflow.contrib.tpu.TPUConfig",
"tensorflow.metrics.mean_squared_error",
"tensorflow.metrics.true_positives",
"tensorflow.nn.bias_add",
"tensorflow.nn.softmax",
"tensorflow.constant",
"tensorflow.train.Scaffold",
"tensorflow.metrics.false_negatives",
"tensorflow.reduce_mean",
"tensorflow.flags.DEFINE_string",
"tensorflow.contrib.metrics.streaming_concat",
"tensorflow.variable_scope"
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junkilee/simple_baselines | cc5cc4b8d83119bf144abb08900762b76b1a33ac | """Deep Q learning graph
The functions in this file can are used to create the following functions:
======= act ========
Function to chose an action given an observation
Parameters
----------
observation: object
Observation that can be feed into the output of make_obs_ph
stochastic: bool
if set to False all the actions are always deterministic (default False)
update_eps_ph: float
update epsilon a new value, if negative not update happens
(default: no update)
Returns
-------
Tensor of dtype tf.int64 and shape (BATCH_SIZE,) with an action to be performed for
every element of the batch.
======= act (in case of parameter noise) ========
Function to chose an action given an observation
Parameters
----------
observation: object
Observation that can be feed into the output of make_obs_ph
stochastic: bool
if set to False all the actions are always deterministic (default False)
update_eps_ph: float
update epsilon a new value, if negative not update happens
(default: no update)
reset_ph: bool
reset the perturbed policy by sampling a new perturbation
update_param_noise_threshold_ph: float
the desired threshold for the difference between non-perturbed and perturbed policy
update_param_noise_scale_ph: bool
whether or not to update the scale of the noise for the next time it is re-perturbed
Returns
-------
Tensor of dtype tf.int64 and shape (BATCH_SIZE,) with an action to be performed for
every element of the batch.
======= train =======
Function that takes a transition (s,a,r,s') and optimizes Bellman equation's error:
td_error = Q(s,a) - (r + gamma * max_a' Q(s', a'))
loss = huber_loss[td_error]
Parameters
----------
obs_t: object
a batch of observations
action: np.array
actions that were selected upon seeing obs_t.
dtype must be int32 and shape must be (batch_size,)
reward: np.array
immediate reward attained after executing those actions
dtype must be float32 and shape must be (batch_size,)
obs_tp1: object
observations that followed obs_t
done: np.array
1 if obs_t was the last observation in the episode and 0 otherwise
obs_tp1 gets ignored, but must be of the valid shape.
dtype must be float32 and shape must be (batch_size,)
weight: np.array
imporance weights for every element of the batch (gradient is multiplied
by the importance weight) dtype must be float32 and shape must be (batch_size,)
Returns
-------
td_error: np.array
a list of differences between Q(s,a) and the target in Bellman's equation.
dtype is float32 and shape is (batch_size,)
======= update_target ========
copy the parameters from optimized Q function to the target Q function.
In Q learning we actually optimize the following error:
Q(s,a) - (r + gamma * max_a' Q'(s', a'))
Where Q' is lagging behind Q to stablize the learning. For example for Atari
Q' is set to Q once every 10000 updates training steps.
"""
import tensorflow as tf
import baselines.common.tf_util as U
def default_param_noise_filter(var):
if var not in tf.trainable_variables():
# We never perturb non-trainable vars.
return False
if "fully_connected" in var.name:
# We perturb fully-connected layers.
return True
# The remaining layers are likely conv or layer norm layers, which we do not wish to
# perturb (in the former case because they only extract features, in the latter case because
# we use them for normalization purposes). If you change your network, you will likely want
# to re-consider which layers to perturb and which to keep untouched.
return False
def build_act(make_obs_ph, q_func, num_actions, scope="deepq", reuse=None):
"""Creates the act function:
Parameters
----------
make_obs_ph: str -> tf.placeholder or TfInput
a function that take a name and creates a placeholder of input with that name
q_func: (tf.Variable, int, str, bool) -> tf.Variable
the model that takes the following inputs:
observation_in: object
the output of observation placeholder
num_actions: int
number of actions
scope: str
reuse: bool
should be passed to outer variable scope
and returns a tensor of shape (batch_size, num_actions) with values of every action.
num_actions: int
number of actions.
scope: str or VariableScope
optional scope for variable_scope.
reuse: bool or None
whether or not the variables should be reused. To be able to reuse the scope must be given.
Returns
-------
act: (tf.Variable, bool, float) -> tf.Variable
function to select and action given observation.
` See the top of the file for details.
"""
with tf.variable_scope(scope, reuse=reuse):
observations_ph = U.ensure_tf_input(make_obs_ph("observation"))
stochastic_ph = tf.placeholder(tf.bool, (), name="stochastic")
update_eps_ph = tf.placeholder(tf.float32, (), name="update_eps")
eps = tf.get_variable("eps", (), initializer=tf.constant_initializer(0))
q_values = q_func(observations_ph.get(), num_actions, scope="q_func")
deterministic_actions = tf.argmax(q_values, axis=1)
batch_size = tf.shape(observations_ph.get())[0]
random_actions = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=num_actions, dtype=tf.int64)
chose_random = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=1, dtype=tf.float32) < eps
stochastic_actions = tf.where(chose_random, random_actions, deterministic_actions)
output_actions = tf.cond(stochastic_ph, lambda: stochastic_actions, lambda: deterministic_actions)
update_eps_expr = eps.assign(tf.cond(update_eps_ph >= 0, lambda: update_eps_ph, lambda: eps))
act = U.function(inputs=[observations_ph, stochastic_ph, update_eps_ph],
outputs=[output_actions, update_eps_expr, eps],
givens={update_eps_ph: -1.0, stochastic_ph: True},
updates=[update_eps_expr])
return act
def build_test_act(make_obs_ph, q_func, num_actions, scope="deepq", reuse=None, test_epsilon=0.0):
"""Creates the act function:
Parameters
----------
make_obs_ph: str -> tf.placeholder or TfInput
a function that take a name and creates a placeholder of input with that name
q_func: (tf.Variable, int, str, bool) -> tf.Variable
the model that takes the following inputs:
observation_in: object
the output of observation placeholder
num_actions: int
number of actions
scope: str
reuse: bool
should be passed to outer variable scope
and returns a tensor of shape (batch_size, num_actions) with values of every action.
num_actions: int
number of actions.
scope: str or VariableScope
optional scope for variable_scope.
reuse: bool or None
whether or not the variables should be reused. To be able to reuse the scope must be given.
Returns
-------
act: (tf.Variable, bool, float) -> tf.Variable
function to select and action given observation.
` See the top of the file for details.
"""
with tf.variable_scope(scope, reuse=reuse):
observations_ph = U.ensure_tf_input(make_obs_ph("observation"))
stochastic_ph = tf.placeholder(tf.bool, (), name="stochastic")
update_eps_ph = tf.placeholder(tf.float32, (), name="update_eps")
eps = tf.get_variable("eps", (), initializer=tf.constant_initializer(0.0))
q_func_results = q_func(observations_ph.get(), num_actions, scope="q_func")
q_values = q_func_results['q']
s_value = q_func_results['s']
a_values = q_func_results['a']
deterministic_actions = tf.argmax(q_values, axis=1)
batch_size = tf.shape(observations_ph.get())[0]
random_actions = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=num_actions, dtype=tf.int64)
chose_random = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=1, dtype=tf.float32) < eps
stochastic_actions = tf.where(chose_random, random_actions, deterministic_actions)
output_actions = tf.cond(stochastic_ph, lambda: stochastic_actions, lambda: deterministic_actions)
update_eps_expr = eps.assign(tf.cond(update_eps_ph >= 0, lambda: update_eps_ph, lambda: eps))
act = U.function(inputs=[observations_ph, stochastic_ph, update_eps_ph],
outputs=[output_actions, q_values, s_value, a_values, update_eps_expr],
givens={update_eps_ph: test_epsilon, stochastic_ph: False},
updates=[update_eps_expr])
return act
def build_act_with_param_noise(make_obs_ph, q_func, num_actions, scope="deepq", reuse=None, param_noise_filter_func=None):
"""Creates the act function with support for parameter space noise exploration (https://arxiv.org/abs/1706.01905):
Parameters
----------
make_obs_ph: str -> tf.placeholder or TfInput
a function that take a name and creates a placeholder of input with that name
q_func: (tf.Variable, int, str, bool) -> tf.Variable
the model that takes the following inputs:
observation_in: object
the output of observation placeholder
num_actions: int
number of actions
scope: str
reuse: bool
should be passed to outer variable scope
and returns a tensor of shape (batch_size, num_actions) with values of every action.
num_actions: int
number of actions.
scope: str or VariableScope
optional scope for variable_scope.
reuse: bool or None
whether or not the variables should be reused. To be able to reuse the scope must be given.
param_noise_filter_func: tf.Variable -> bool
function that decides whether or not a variable should be perturbed. Only applicable
if param_noise is True. If set to None, default_param_noise_filter is used by default.
Returns
-------
act: (tf.Variable, bool, float, bool, float, bool) -> tf.Variable
function to select and action given observation.
` See the top of the file for details.
"""
if param_noise_filter_func is None:
param_noise_filter_func = default_param_noise_filter
with tf.variable_scope(scope, reuse=reuse):
observations_ph = U.ensure_tf_input(make_obs_ph("observation"))
stochastic_ph = tf.placeholder(tf.bool, (), name="stochastic")
update_eps_ph = tf.placeholder(tf.float32, (), name="update_eps")
update_param_noise_threshold_ph = tf.placeholder(tf.float32, (), name="update_param_noise_threshold")
update_param_noise_scale_ph = tf.placeholder(tf.bool, (), name="update_param_noise_scale")
reset_ph = tf.placeholder(tf.bool, (), name="reset")
eps = tf.get_variable("eps", (), initializer=tf.constant_initializer(0))
param_noise_scale = tf.get_variable("param_noise_scale", (), initializer=tf.constant_initializer(0.01), trainable=False)
param_noise_threshold = tf.get_variable("param_noise_threshold", (), initializer=tf.constant_initializer(0.05), trainable=False)
# Unmodified Q.
q_values = q_func(observations_ph.get(), num_actions, scope="q_func")
# Perturbable Q used for the actual rollout.
q_values_perturbed = q_func(observations_ph.get(), num_actions, scope="perturbed_q_func")
# We have to wrap this code into a function due to the way tf.cond() works. See
# https://stackoverflow.com/questions/37063952/confused-by-the-behavior-of-tf-cond for
# a more detailed discussion.
def perturb_vars(original_scope, perturbed_scope):
all_vars = U.scope_vars(U.absolute_scope_name("q_func"))
all_perturbed_vars = U.scope_vars(U.absolute_scope_name("perturbed_q_func"))
assert len(all_vars) == len(all_perturbed_vars)
perturb_ops = []
for var, perturbed_var in zip(all_vars, all_perturbed_vars):
if param_noise_filter_func(perturbed_var):
# Perturb this variable.
op = tf.assign(perturbed_var, var + tf.random_normal(shape=tf.shape(var), mean=0., stddev=param_noise_scale))
else:
# Do not perturb, just assign.
op = tf.assign(perturbed_var, var)
perturb_ops.append(op)
assert len(perturb_ops) == len(all_vars)
return tf.group(*perturb_ops)
# Set up functionality to re-compute `param_noise_scale`. This perturbs yet another copy
# of the network and measures the effect of that perturbation in action space. If the perturbation
# is too big, reduce scale of perturbation, otherwise increase.
q_values_adaptive = q_func(observations_ph.get(), num_actions, scope="adaptive_q_func")
perturb_for_adaption = perturb_vars(original_scope="q_func", perturbed_scope="adaptive_q_func")
kl = tf.reduce_sum(tf.nn.softmax(q_values) * (tf.log(tf.nn.softmax(q_values)) - tf.log(tf.nn.softmax(q_values_adaptive))), axis=-1)
mean_kl = tf.reduce_mean(kl)
def update_scale():
with tf.control_dependencies([perturb_for_adaption]):
update_scale_expr = tf.cond(mean_kl < param_noise_threshold,
lambda: param_noise_scale.assign(param_noise_scale * 1.01),
lambda: param_noise_scale.assign(param_noise_scale / 1.01),
)
return update_scale_expr
# Functionality to update the threshold for parameter space noise.
update_param_noise_threshold_expr = param_noise_threshold.assign(tf.cond(update_param_noise_threshold_ph >= 0,
lambda: update_param_noise_threshold_ph, lambda: param_noise_threshold))
# Put everything together.
deterministic_actions = tf.argmax(q_values_perturbed, axis=1)
batch_size = tf.shape(observations_ph.get())[0]
random_actions = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=num_actions, dtype=tf.int64)
chose_random = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=1, dtype=tf.float32) < eps
stochastic_actions = tf.where(chose_random, random_actions, deterministic_actions)
output_actions = tf.cond(stochastic_ph, lambda: stochastic_actions, lambda: deterministic_actions)
update_eps_expr = eps.assign(tf.cond(update_eps_ph >= 0, lambda: update_eps_ph, lambda: eps))
updates = [
update_eps_expr,
tf.cond(reset_ph, lambda: perturb_vars(original_scope="q_func", perturbed_scope="perturbed_q_func"), lambda: tf.group(*[])),
tf.cond(update_param_noise_scale_ph, lambda: update_scale(), lambda: tf.Variable(0., trainable=False)),
update_param_noise_threshold_expr,
]
act = U.function(inputs=[observations_ph, stochastic_ph, update_eps_ph, reset_ph, update_param_noise_threshold_ph, update_param_noise_scale_ph],
outputs=output_actions,
givens={update_eps_ph: -1.0, stochastic_ph: True, reset_ph: False, update_param_noise_threshold_ph: False, update_param_noise_scale_ph: False},
updates=updates)
return act
def build_train(make_obs_ph, q_func, num_actions, optimizer, grad_norm_clipping=None, gamma=1.0,
double_q=True, scope="deepq", reuse=None, param_noise=False, param_noise_filter_func=None):
"""Creates the train function:
Parameters
----------
make_obs_ph: str -> tf.placeholder or TfInput
a function that takes a name and creates a placeholder of input with that name
q_func: (tf.Variable, int, str, bool) -> tf.Variable
the model that takes the following inputs:
observation_in: object
the output of observation placeholder
num_actions: int
number of actions
scope: str
reuse: bool
should be passed to outer variable scope
and returns a tensor of shape (batch_size, num_actions) with values of every action.
num_actions: int
number of actions
reuse: bool
whether or not to reuse the graph variables
optimizer: tf.train.Optimizer
optimizer to use for the Q-learning objective.
grad_norm_clipping: float or None
clip gradient norms to this value. If None no clipping is performed.
gamma: float
discount rate.
double_q: bool
if true will use Double Q Learning (https://arxiv.org/abs/1509.06461).
In general it is a good idea to keep it enabled.
scope: str or VariableScope
optional scope for variable_scope.
reuse: bool or None
whether or not the variables should be reused. To be able to reuse the scope must be given.
param_noise: bool
whether or not to use parameter space noise (https://arxiv.org/abs/1706.01905)
param_noise_filter_func: tf.Variable -> bool
function that decides whether or not a variable should be perturbed. Only applicable
if param_noise is True. If set to None, default_param_noise_filter is used by default.
Returns
-------
act: (tf.Variable, bool, float) -> tf.Variable
function to select and action given observation.
` See the top of the file for details.
train: (object, np.array, np.array, object, np.array, np.array) -> np.array
optimize the error in Bellman's equation.
` See the top of the file for details.
update_target: () -> ()
copy the parameters from optimized Q function to the target Q function.
` See the top of the file for details.
debug: {str: function}
a bunch of functions to print debug data like q_values.
"""
if param_noise:
act_f = build_act_with_param_noise(make_obs_ph, q_func, num_actions, scope=scope, reuse=reuse,
param_noise_filter_func=param_noise_filter_func)
else:
act_f = build_act(make_obs_ph, q_func, num_actions, scope=scope, reuse=reuse)
with tf.variable_scope(scope, reuse=reuse):
# set up placeholders
obs_t_input = U.ensure_tf_input(make_obs_ph("obs_t"))
act_t_ph = tf.placeholder(tf.int32, [None], name="action")
rew_t_ph = tf.placeholder(tf.float32, [None], name="reward")
obs_tp1_input = U.ensure_tf_input(make_obs_ph("obs_tp1"))
done_mask_ph = tf.placeholder(tf.float32, [None], name="done")
importance_weights_ph = tf.placeholder(tf.float32, [None], name="weight")
# q network evaluation
q_t = q_func(obs_t_input.get(), num_actions, scope="q_func", reuse=True) # reuse parameters from act
q_func_vars = U.scope_vars(U.absolute_scope_name("q_func"))
# target q network evalution
q_tp1 = q_func(obs_tp1_input.get(), num_actions, scope="target_q_func")
target_q_func_vars = U.scope_vars(U.absolute_scope_name("target_q_func"))
# q scores for actions which we know were selected in the given state.
q_t_selected = tf.reduce_sum(q_t * tf.one_hot(act_t_ph, num_actions), 1)
# compute estimate of best possible value starting from state at t + 1
if double_q:
q_tp1_using_online_net = q_func(obs_tp1_input.get(), num_actions, scope="q_func", reuse=True)
q_tp1_best_using_online_net = tf.arg_max(q_tp1_using_online_net, 1)
q_tp1_best = tf.reduce_sum(q_tp1 * tf.one_hot(q_tp1_best_using_online_net, num_actions), 1)
else:
q_tp1_best = tf.reduce_max(q_tp1, 1)
q_tp1_best_masked = (1.0 - done_mask_ph) * q_tp1_best
# compute RHS of bellman equation
q_t_selected_target = rew_t_ph + gamma * q_tp1_best_masked
# compute the error (potentially clipped)
td_error = q_t_selected - tf.stop_gradient(q_t_selected_target)
errors = U.huber_loss(td_error)
weighted_error = tf.reduce_mean(importance_weights_ph * errors)
# compute optimization op (potentially with gradient clipping)
if grad_norm_clipping is not None:
optimize_expr = U.minimize_and_clip(optimizer,
weighted_error,
var_list=q_func_vars,
clip_val=grad_norm_clipping)
else:
optimize_expr = optimizer.minimize(weighted_error, var_list=q_func_vars)
# update_target_fn will be called periodically to copy Q network to target Q network
update_target_expr = []
for var, var_target in zip(sorted(q_func_vars, key=lambda v: v.name),
sorted(target_q_func_vars, key=lambda v: v.name)):
update_target_expr.append(var_target.assign(var))
update_target_expr = tf.group(*update_target_expr)
# Create callable functions
train = U.function(
inputs=[
obs_t_input,
act_t_ph,
rew_t_ph,
obs_tp1_input,
done_mask_ph,
importance_weights_ph
],
outputs=td_error,
updates=[optimize_expr]
)
update_target = U.function([], [], updates=[update_target_expr])
q_values = U.function([obs_t_input], q_t)
return act_f, train, update_target, {'q_values': q_values}
| [
"tensorflow.cond",
"tensorflow.control_dependencies",
"tensorflow.stack",
"tensorflow.where",
"tensorflow.group",
"tensorflow.Variable",
"tensorflow.stop_gradient",
"tensorflow.trainable_variables",
"tensorflow.argmax",
"tensorflow.shape",
"tensorflow.placeholder",
"tensorflow.one_hot",
"tensorflow.reduce_max",
"tensorflow.nn.softmax",
"tensorflow.arg_max",
"tensorflow.reduce_mean",
"tensorflow.assign",
"tensorflow.constant_initializer",
"tensorflow.variable_scope"
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fol21/domain-adaptation-in-deforestation | ae1c37b1634f54230f1d2217c209dabd6780568a | import os
import numpy as np
import tensorflow as tf
class Networks():
def __init__(self, args):
super(Networks, self).__init__()
self.args = args
# Wittich design
def VNET_16L(self, I, is_train, reuse_unet=False, reuse_ada=False, adaption_net=False):
def encoder_conf(name, X, filter, f_size, scale, norm, reuse, is_train, dropout=0.0, stddev=-1.0, slope=0.00,
use_bias=True):
with tf.variable_scope(name) as scope:
if scale > 1:
X = self.conv(name + '_downsample', X, filter, scale, scale, (not norm) and use_bias, "VALID", stddev)
else:
X = self.conv(name + '_conf', X, filter, f_size, 1, (not norm) and use_bias, "VALID", stddev)
if norm == 'I':
X = tf.contrib.layers.instance_norm(X, scope=scope, reuse=reuse)
elif norm == 'B':
X = tf.layers.batch_normalization(X, reuse=reuse, training=is_train, name=name)
elif norm == 'G':
X = tf.contrib.layers.group_norm(X, groups=16, scope=scope, reuse=reuse)
if dropout > 0.0:
X = tf.layers.dropout(X, dropout, training=is_train)
if slope < 1.0:
X = tf.nn.leaky_relu(X, slope) if slope > 0.0 else tf.nn.relu(X)
return X
def decoder_conf(name, X, filter, f_size, scale, norm, reuse, is_train, dropout=0.0, stddev=-1.0, slope=0.00,
use_bias=True):
with tf.variable_scope(name) as scope:
if scale > 1:
X = self.t_conv(name + '_upsample', X, filter, scale, scale, (not norm) and use_bias, "VALID", stddev)
else:
X = self.t_conv(name + '_deconf', X, filter, f_size, 1, (not norm) and use_bias, "VALID", stddev)
if norm == 'I':
X = tf.contrib.layers.instance_norm(X, scope=scope, reuse=reuse)
elif norm == 'B':
X = tf.layers.batch_normalization(X, reuse=reuse, training=is_train, name=name)
elif norm == 'G':
X = tf.contrib.layers.group_norm(X, groups=16, scope=scope, reuse=reuse)
if dropout > 0.0:
X = tf.layers.dropout(X, dropout, training=is_train)
if slope < 1.0:
X = tf.nn.leaky_relu(X, slope) if slope > 0.0 else tf.nn.relu(X)
return X
F = 3
norm = self.args.norm
# print('norm', norm)
# print('skip cons', self.args.skip_connections)
# print('VNET In:', I.get_shape().as_list())
if adaption_net:
# print('ada scope T/R', is_train, reuse_ada)
encoderscope = 'ada_enc'
decoderscope = 'ada_dec'
reuse_encoder = reuse_ada
reuse_decoder = reuse_ada
else:
# print('vnet scope T/R', is_train, reuse_unet)
encoderscope = 'unet_enc'
decoderscope = 'unet_dec'
reuse_encoder = reuse_unet
reuse_decoder = reuse_unet
print([encoderscope, ' ', decoderscope])
# ===============================================================================ENCODER
with tf.variable_scope(encoderscope) as scope:
if reuse_encoder: scope.reuse_variables()
with tf.variable_scope('color_encoder'):
X = encoder_conf('eI', I[:, :, :, :-1], 96, 5, 1, norm, reuse_encoder, is_train, self.args.dropout) # 128 > 124
X0 = encoder_conf('d0', X, 96, 2, 2, norm, reuse_encoder, is_train, self.args.dropout) # 124 > 62 @2
X = encoder_conf('e1', X0, 128, 3, 1, norm, reuse_encoder, is_train, self.args.dropout) # 62 > 60
X_EARLY = X
X1 = encoder_conf('d1', X, 128, 2, 2, norm, reuse_encoder, is_train, self.args.dropout) # 60 > 30 @4
X = encoder_conf('e2', X1, 256, 3, 1, norm, reuse_encoder, is_train, self.args.dropout) # 30 > 28
X2 = encoder_conf('d2', X, 256, 2, 2, norm, reuse_encoder, is_train, self.args.dropout) # 28 > 14 @8
X = encoder_conf('e3', X2, 512, 3, 1, norm, reuse_encoder, is_train, self.args.dropout) # 14 > 12
X_MIDDLE = X
# ===============================================================================DECODER
with tf.variable_scope(decoderscope) as scope:
if reuse_decoder: scope.reuse_variables()
# print('vnet scope', is_train, reuse_unet)
# print('VNET Latent:', X.get_shape().as_list())
with tf.variable_scope('decoder'):
X = decoder_conf('d3', X, 512, F, 1, norm, reuse_decoder, is_train, self.args.dropout) # 12 > 14
if self.args.skip_connections: X = tf.concat((X, X2), axis=-1)
X = decoder_conf('u4', X, 256, F, 2, norm, reuse_decoder, is_train, self.args.dropout) # 14 > 28
X = decoder_conf('d4', X, 256, F, 1, norm, reuse_decoder, is_train, self.args.dropout) # 28 > 30
if self.args.skip_connections: X = tf.concat((X, X1), axis=-1)
X = decoder_conf('u5', X, 128, F, 2, norm, reuse_decoder, is_train, self.args.dropout) # 30 > 60
X_LATE = X
X = decoder_conf('d5', X, 128, F, 1, norm, reuse_decoder, is_train, self.args.dropout) # 60 > 62
if self.args.skip_connections: X = tf.concat((X, X0), axis=-1)
X = decoder_conf('u6', X, 64, F, 2, norm, reuse_decoder, is_train, self.args.dropout) # 62 > 124
X = decoder_conf('d6', X, 64, 5, 1, norm, reuse_decoder, is_train, self.args.dropout) # 124 > 128
X = decoder_conf('out', X, self.args.num_classes, 1, 1, '', reuse_decoder, is_train, slope=1.0, stddev=0.02,
use_bias=False)
prediction = tf.nn.softmax(X, name = 'softmax')
# ============================================================================OUT
# print('VNET Out:', X.get_shape().as_list())
# if self.args.mode == 'adapt':
return X, X_EARLY, X_MIDDLE, X_LATE, prediction
# else:
# return X, prediction
def D_4(self, X, reuse):
def discrim_conv(name, X, out_channels, filtersize, stride=1, norm='', nonlin=True, init_stddev=-1):
with tf.variable_scope(name) as scope:
if init_stddev <= 0.0:
init = tf.contrib.layers.variance_scaling_initializer(dtype=tf.float32)
else:
init = tf.truncated_normal_initializer(stddev=init_stddev)
X = tf.layers.conv2d(X, out_channels, kernel_size=filtersize, strides=(stride, stride), padding="valid",
kernel_initializer=init)
if norm == 'I':
X = tf.contrib.layers.instance_norm(X, scope=scope, reuse=reuse, epsilon=0.001)
elif norm == 'B':
X = tf.layers.batch_normalization(X, reuse=reuse, training=True)
elif norm == 'G':
X = tf.contrib.layers.group_norm(X, groups=16, scope=scope, reuse=reuse)
if nonlin:
X = tf.nn.leaky_relu(X, 0.2)
return X
with tf.variable_scope('discriminator') as scope:
if reuse:
scope.reuse_variables()
print('D in:', X.get_shape().as_list())
X = self.conv('DZ1', X, 512, 1, 1)
X = tf.nn.leaky_relu(X, 0.2)
X = self.conv('DZ2', X, 512, 1, 1)
X = tf.nn.leaky_relu(X, 0.2)
X = self.conv('DZ3', X, 512, 1, 1)
X = tf.nn.leaky_relu(X, 0.2)
X = self.conv('DZ4', X, 512, 1, 1)
X = tf.nn.leaky_relu(X, 0.2)
X = discrim_conv('d_out', X, 1, 1, norm=False, nonlin=False, init_stddev=0.02)
print('D out:', X.get_shape().as_list())
return X
def atrous_discriminator(self, X, reuse):
def atrous_convs(net, scope, rate=None, depth=256, reuse=None):
"""
ASPP layer 1×1 convolution and three 3×3 atrous convolutions
"""
with tf.variable_scope(scope, reuse=reuse):
pyram_1x1_0 = self.conv('_1x1', net, depth, size=1, stride=1, padding="SAME")
pyram_3x3_1 = self.conv('_3x3', net, depth, size=3, stride=1, padding="SAME")
pyram_3x3_2 = self.conv('_atr_3x3_1', net, depth, size=3, stride=1, padding="SAME", dilation=rate[0])
pyram_3x3_3 = self.conv('_atr_3x3_2', net, depth, size=3, stride=1, padding="SAME", dilation=rate[1])
# pyram_3x3_4 = self.z_conv('_atr_3x3_3', net, depth/2, size=3, stride=1, padding="SAME", dilation=rate[2])
net = tf.concat((pyram_1x1_0, pyram_3x3_1, pyram_3x3_2, pyram_3x3_3), axis=3, name="concat")
net = self.conv('_1x1_output', net, depth, size=1, stride=1, padding="SAME")
# pyram_1x1_0 = self.conv('_1x1', net, depth, size=1, stride=1, padding="SAME")
# pyram_3x3_1 = self.conv('_3x3', net, depth/2, size=3, stride=1, padding="SAME")
# pyram_3x3_2 = self.conv('_atr_3x3_1', net, depth/2, size=3, stride=1, padding="SAME", dilation=rate[0])
# pyram_3x3_3 = self.conv('_atr_3x3_2', net, depth/2, size=3, stride=1, padding="SAME", dilation=rate[1])
# # pyram_3x3_4 = self.conv('_atr_3x3_3', net, depth/2, size=3, stride=1, padding="SAME", dilation=rate[2])
# net = tf.concat((pyram_1x1_0, pyram_3x3_1, pyram_3x3_2, pyram_3x3_3), axis=3, name="concat")
# net = self.conv('_1x1_output', net, depth, size=1, stride=1, padding="SAME")
return net
with tf.variable_scope('discriminator') as scope:
if reuse:
scope.reuse_variables()
print('D in:', X.get_shape().as_list())
rate = [2, 3, 4]
X = atrous_convs(X, "d_atrous_0", rate = rate, depth=256, reuse=reuse)
X = tf.nn.leaky_relu(X, 0.2)
X = self.conv('d_1', X, 512, size=1, stride=1, padding="SAME")
X = tf.nn.leaky_relu(X, 0.2)
X = self.conv('d_2', X, 512, size=1, stride=1, padding="SAME")
X = tf.nn.leaky_relu(X, 0.2)
X = self.conv('d_3', X, 512, size=1, stride=1, padding="SAME")
X = tf.nn.leaky_relu(X, 0.2)
X = self.conv('d_out', X, 1, size=1, stride=1, padding="SAME")
print('D out:', X.get_shape().as_list())
return X
def conv(self, id, input, channels, size=3, stride=1, use_bias=True, padding="SAME", init_stddev=-1.0, dilation=1):
assert padding in ["SAME", "VALID", "REFLECT", "PARTIAL"], 'valid paddings: "SAME", "VALID", "REFLECT", "PARTIAL"'
if type(size) == int: size = [size, size]
if init_stddev <= 0.0:
init = tf.contrib.layers.variance_scaling_initializer(dtype=tf.float32)
else:
init = tf.truncated_normal_initializer(stddev=init_stddev)
if padding == "PARTIAL":
with tf.variable_scope('mask'):
_, h, w, _ = input.get_shape().as_list()
slide_window = size[0] * size[1]
mask = tf.ones(shape=[1, h, w, 1])
update_mask = tf.layers.conv2d(mask, filters=1, dilation_rate=(dilation, dilation), name='mask' + id,
kernel_size=size, kernel_initializer=tf.constant_initializer(1.0),
strides=stride, padding="SAME", use_bias=False, trainable=False)
mask_ratio = slide_window / (update_mask + 1e-8)
update_mask = tf.clip_by_value(update_mask, 0.0, 1.0)
mask_ratio = mask_ratio * update_mask
with tf.variable_scope('parconv'):
x = tf.layers.conv2d(input, filters=channels, name='conv' + id, kernel_size=size, kernel_initializer=init,
strides=stride, padding="SAME", use_bias=False)
x = x * mask_ratio
if use_bias:
bias = tf.get_variable("bias" + id, [channels], initializer=tf.constant_initializer(0.0))
x = tf.nn.bias_add(x, bias)
return x * update_mask
if padding == "REFLECT":
assert size[0] % 2 == 1 and size[1] % 2 == 1, "REFLECTION PAD ONLY WORKING FOR ODD FILTER SIZE.. " + str(size)
pad_x = size[0] // 2
pad_y = size[1] // 2
input = tf.pad(input, [[0, 0], [pad_x, pad_x], [pad_y, pad_y], [0, 0]], "REFLECT")
padding = "VALID"
return tf.layers.conv2d(input, channels, kernel_size=size, strides=[stride, stride],
padding=padding, kernel_initializer=init, name='conv' + id,
use_bias=use_bias, dilation_rate=(dilation, dilation))
def z_conv(self, id, input, channels, size, stride=1, padding="SAME", use_bias=False, dilation=1):
# zero mean conv
if type(size) == int: size = [size, size]
in_ch = input.get_shape().as_list()[-1]
# init = tf.contrib.layers.variance_scaling_initializer(dtype=tf.float32)
init = tf.truncated_normal_initializer(mean=0.0, stddev=0.02)
filters = tf.get_variable('zero_conv_weights' + id, initializer=init, shape=[size[0], size[1], in_ch, channels])
filters = filters - tf.reduce_mean(filters, axis=[0, 1, 2], keepdims=True)
if padding == "PARTIAL":
with tf.variable_scope('mask'):
_, h, w, _ = input.get_shape().as_list()
slide_window = size[0] * size[1]
mask = tf.ones(shape=[1, h, w, 1])
update_mask = tf.layers.conv2d(mask, filters=1, name='mask' + id,
kernel_size=size, kernel_initializer=tf.constant_initializer(1.0),
strides=stride, padding="SAME", use_bias=False, trainable=False,
dilation_rate=(dilation, dilation))
mask_ratio = slide_window / (update_mask + 1e-8)
update_mask = tf.clip_by_value(update_mask, 0.0, 1.0)
mask_ratio = mask_ratio * update_mask
with tf.variable_scope('parconv'):
x = tf.nn.conv2d(input, filters, strides=[1, stride, stride, 1], padding="SAME", name='zero-conv_' + id,
dilations=(1, dilation, dilation, 1))
x = x * mask_ratio
if use_bias:
bias = tf.get_variable("bias" + id, [channels], initializer=tf.constant_initializer(0.0))
x = tf.nn.bias_add(x, bias)
return x * update_mask
x = tf.nn.conv2d(input, filters, strides=[1, stride, stride, 1], padding=padding, name='zero-conv_' + id,
dilations=(1, dilation, dilation, 1))
if use_bias:
bias = tf.get_variable("bias", [channels], initializer=tf.constant_initializer(0.0))
x = tf.nn.bias_add(x, bias)
return x
def t_conv(self, id, input, channels, size=3, stride=1, use_bias=True, padding="SAME", init_stddev=-1.0):
# good old t-conv. I love it!
assert padding in ["SAME", "VALID"], 'valid paddings are "SAME", "VALID"'
if type(size) == int:
size = [size, size]
if init_stddev <= 0.0:
init = tf.contrib.layers.variance_scaling_initializer(dtype=tf.float32)
else:
init = tf.truncated_normal_initializer(stddev=init_stddev)
return tf.layers.conv2d_transpose(input, channels, kernel_size=size, strides=[stride, stride],
padding=padding, kernel_initializer=init, name='tr_conv' + id, use_bias=use_bias)
# Traditional U-Net
def build_Unet_Arch(self, input_data, name="Unet_Arch"):
self.base_number_of_features = 32
with tf.variable_scope(name):
# Encoder definition
o_c1 = self.general_conv2d(input_data, self.base_number_of_features, 3, stride = 1, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_conv2d_1')
o_mp1 = tf.layers.max_pooling2d(o_c1, 2, 2, name = name + '_maxpooling_1')
o_c2 = self.general_conv2d(o_mp1, self.base_number_of_features * 2, 3, stride = 1, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_conv2d_2')
o_mp2 = tf.layers.max_pooling2d(o_c2, 2, 2, name = name + '_maxpooling_2')
o_c3 = self.general_conv2d(o_mp2, self.base_number_of_features * 4, 3, stride = 1, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_conv2d_3')
o_mp3 = tf.layers.max_pooling2d(o_c3, 2, 2, name = name + '_maxpooling_3')
o_c4 = self.general_conv2d(o_mp3, self.base_number_of_features * 8, 3, stride = 1, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_conv2d_4')
o_mp4 = tf.layers.max_pooling2d(o_c4, 2, 2, name = name + '_maxpooling_4')
o_c5 = self.general_conv2d(o_mp4, self.base_number_of_features * 16, 3, stride = 1, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_conv2d_5')
# Decoder definition
o_d1 = self.general_deconv2d(o_c5, self.base_number_of_features * 8, 3, stride = 2, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_deconv2d_1')
o_me1 = tf.concat([o_d1, o_c4], 3) # Skip connection
o_d2 = self.general_deconv2d(o_me1, self.base_number_of_features * 4, 3, stride = 2, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_deconv2d_2')
o_me2 = tf.concat([o_d2, o_c3], 3) # Skip connection
o_d3 = self.general_deconv2d(o_me2, self.base_number_of_features * 2, 3, stride = 2, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_deconv2d_3')
o_me3 = tf.concat([o_d3, o_c2], 3) # Skip connection
o_d4 = self.general_deconv2d(o_me3, self.base_number_of_features, 3, stride = 2, padding = 'SAME', activation_function = 'relu', do_norm = False, name = name + '_deconv2d_4')
o_me4 = tf.concat([o_d4, o_c1], 3) # Skip connection
logits = tf.layers.conv2d(o_me4, self.args.num_classes, 1, 1, 'SAME', activation = None)
prediction = tf.nn.softmax(logits, name = name + '_softmax')
return logits, prediction
def general_conv2d(self, input_data, filters = 64, kernel_size = 7, stride = 1, stddev = 0.02, activation_function = "relu", padding = "VALID", do_norm=True, relu_factor = 0, name="conv2d"):
with tf.variable_scope(name):
conv = tf.layers.conv2d(input_data, filters, kernel_size, stride, padding, activation=None)
if do_norm:
conv = tf.layers.batch_normalization(conv, momentum=0.9)
if activation_function == "relu":
conv = tf.nn.relu(conv, name = 'relu')
if activation_function == "leakyrelu":
conv = tf.nn.leaky_relu(conv, alpha=relu_factor)
if activation_function == "elu":
conv = tf.nn.elu(conv, name = 'elu')
return conv
def general_deconv2d(self, input_data, filters = 64, kernel_size = 7, stride = 1, stddev = 0.02, activation_function = "relu", padding = "VALID", do_norm = True, relu_factor = 0, name="deconv2d"):
with tf.variable_scope(name):
deconv = tf.layers.conv2d_transpose(input_data, filters, kernel_size, (stride, stride), padding, activation = None)
if do_norm:
deconv = tf.layers.batch_normalization(deconv, momentum = 0.9)
if activation_function == "relu":
deconv = tf.nn.relu(deconv, name = 'relu')
if activation_function == "leakyrelu":
deconv = tf.nn.leaky_relu(deconv, alpha=relu_factor)
if activation_function == "elu":
deconv = tf.nn.elu(deconv, name = 'elu')
return deconv
| [
"tensorflow.get_variable",
"tensorflow.concat",
"tensorflow.layers.dropout",
"tensorflow.layers.conv2d_transpose",
"tensorflow.pad",
"tensorflow.contrib.layers.group_norm",
"tensorflow.nn.conv2d",
"tensorflow.layers.batch_normalization",
"tensorflow.contrib.layers.variance_scaling_initializer",
"tensorflow.truncated_normal_initializer",
"tensorflow.layers.conv2d",
"tensorflow.nn.elu",
"tensorflow.contrib.layers.instance_norm",
"tensorflow.nn.leaky_relu",
"tensorflow.nn.bias_add",
"tensorflow.clip_by_value",
"tensorflow.nn.relu",
"tensorflow.nn.softmax",
"tensorflow.reduce_mean",
"tensorflow.layers.max_pooling2d",
"tensorflow.ones",
"tensorflow.constant_initializer",
"tensorflow.variable_scope"
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'name'}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.nn.leaky_relu', 'tf.nn.leaky_relu', (['X', 'slope'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.nn.relu', 'tf.nn.relu', (['X'], {}), True, 'import tensorflow as tf\n'), (134, 'tensorflow.layers.batch_normalization', 'tf.layers.batch_normalization', (['X'], {'reuse': 'reuse', 'training': '(True)'}), True, 'import tensorflow as tf\n'), (230, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(1.0)'], {}), True, 'import tensorflow as tf\n'), (272, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(1.0)'], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.contrib.layers.group_norm', 'tf.contrib.layers.group_norm', (['X'], {'groups': '(16)', 'scope': 'scope', 'reuse': 'reuse'}), True, 'import tensorflow as tf\n'), (48, 'tensorflow.contrib.layers.group_norm', 'tf.contrib.layers.group_norm', (['X'], {'groups': '(16)', 'scope': 'scope', 'reuse': 'reuse'}), True, 'import tensorflow as tf\n'), (136, 'tensorflow.contrib.layers.group_norm', 'tf.contrib.layers.group_norm', (['X'], {'groups': '(16)', 'scope': 'scope', 'reuse': 'reuse'}), True, 'import tensorflow as tf\n'), (241, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(0.0)'], {}), True, 'import tensorflow as tf\n'), (284, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(0.0)'], {}), True, 'import tensorflow as tf\n')] |
tum-ai/expingo-inpainting-service | 657f65316c179f85507350d55e4ab4ac429552a0 | import numpy as np
import cv2
import uvicorn
import tensorflow as tf
import neuralgym as ng
from fastapi.middleware.cors import CORSMiddleware
from pydantic import BaseModel
from fastapi import FastAPI, UploadFile, File
from fastapi import HTTPException
from inpaint.inpainting_model import InpaintCAModel
class PaintRequest(BaseModel):
image: str
mask: str
FLAGS = ng.Config('inpaint.yml')
MODEL_DIR = "../model_logs/places2"
MODEL = InpaintCAModel()
app = FastAPI()
origins = [
"*"
]
app.add_middleware(
CORSMiddleware,
allow_origins=origins,
allow_credentials=True,
allow_methods=["*"],
allow_headers=["*"]
)
@app.get("/")
async def root():
return {"message": "Hello World"}
@app.post("/inpaint/")
async def create_upload_file(request: PaintRequest):
import base64
import io
from PIL import Image
image = request.image
mask = request.mask
image = image.split(",", 1)[1]
mask = mask.split(",", 1)[1]
base64_decoded_image = base64.b64decode(image)
image = Image.open(io.BytesIO(base64_decoded_image))
image = np.array(image)
base64_decoded_mask = base64.b64decode(mask)
mask = Image.open(io.BytesIO(base64_decoded_mask))
mask = np.array(mask)
# mask is always PNG, image might have only 3 dimensions.
mask = mask[:, :, :3]
if image.shape[2] == 4:
image = image[:, :, :3]
# Catch weird error that image is turned if format is jpg and upright
if image.shape[0] == mask.shape[1] and image.shape[1] == mask.shape[0]:
image = np.flip(np.transpose(image, (1, 0, 2)), axis=1)
if image.shape != mask.shape:
raise HTTPException(
status_code=400,
detail=f"Image and Mask have unequal shape. {image.shape} vs {mask.shape}")
# Image and Mask must be same dimension by now. Both have dimensions (x, y, 3)
h, w, _ = image.shape
grid = 8
image = image[:h // grid * grid, :w // grid * grid, :]
mask = mask[:h // grid * grid, :w // grid * grid, :]
print('Shape of image: {}'.format(image.shape))
image = np.expand_dims(image, 0)
mask = np.expand_dims(mask, 0)
print(image.shape)
print(mask.shape)
input_image = np.concatenate([image, mask], axis=2)
print(input_image.shape)
sess_config = tf.ConfigProto()
sess_config.gpu_options.allow_growth = True
with tf.Session(config=sess_config) as sess:
input_image = tf.constant(input_image, dtype=tf.float32)
output = MODEL.build_server_graph(FLAGS, input_image)
output = (output + 1.) * 127.5
output = tf.reverse(output, [-1])
output = tf.saturate_cast(output, tf.uint8)
# load pretrained model
vars_list = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES)
assign_ops = []
for var in vars_list:
vname = var.name
from_name = vname
var_value = tf.contrib.framework.load_variable(MODEL_DIR, from_name)
assign_ops.append(tf.assign(var, var_value))
sess.run(assign_ops)
print('Model loaded.')
result = sess.run(output)
cv2.imwrite("output.png", result[0])
tf.reset_default_graph()
#return FileResponse("output.png", media_type="image/png")
with open("output.png", "rb") as image_file:
image_string = "data:image/png;base64,{}".format(base64.b64encode(image_file.read()).decode())
return {
"image": image_string
}
if __name__ == '__main__':
uvicorn.run(app, host="0.0.0.0", port=8080)
| [
"tensorflow.reverse",
"numpy.expand_dims",
"tensorflow.constant",
"tensorflow.get_collection",
"tensorflow.assign",
"numpy.transpose",
"numpy.concatenate",
"tensorflow.ConfigProto",
"tensorflow.reset_default_graph",
"tensorflow.contrib.framework.load_variable",
"tensorflow.Session",
"tensorflow.saturate_cast",
"numpy.array"
] | app/main.py | [(20, 'neuralgym.Config', 'ng.Config', (['"""inpaint.yml"""'], {}), True, 'import neuralgym as ng\n'), (22, 'inpaint.inpainting_model.InpaintCAModel', 'InpaintCAModel', ([], {}), False, 'from inpaint.inpainting_model import InpaintCAModel\n'), (23, 'fastapi.FastAPI', 'FastAPI', ([], {}), False, 'from fastapi import FastAPI, UploadFile, File\n'), (54, 'base64.b64decode', 'base64.b64decode', (['image'], {}), False, 'import base64\n'), (57, 'numpy.array', 'np.array', (['image'], {}), True, 'import numpy as np\n'), (59, 'base64.b64decode', 'base64.b64decode', (['mask'], {}), False, 'import base64\n'), (62, 'numpy.array', 'np.array', (['mask'], {}), True, 'import numpy as np\n'), (85, 'numpy.expand_dims', 'np.expand_dims', (['image', '(0)'], {}), True, 'import numpy as np\n'), (86, 'numpy.expand_dims', 'np.expand_dims', (['mask', '(0)'], {}), True, 'import numpy as np\n'), (89, 'numpy.concatenate', 'np.concatenate', (['[image, mask]'], {'axis': '(2)'}), True, 'import numpy as np\n'), (92, 'tensorflow.ConfigProto', 'tf.ConfigProto', ([], {}), True, 'import tensorflow as tf\n'), (112, 'tensorflow.reset_default_graph', 'tf.reset_default_graph', ([], {}), True, 'import tensorflow as tf\n'), (122, 'uvicorn.run', 'uvicorn.run', (['app'], {'host': '"""0.0.0.0"""', 'port': '(8080)'}), False, 'import uvicorn\n'), (56, 'io.BytesIO', 'io.BytesIO', (['base64_decoded_image'], {}), False, 'import io\n'), (61, 'io.BytesIO', 'io.BytesIO', (['base64_decoded_mask'], {}), False, 'import io\n'), (73, 'fastapi.HTTPException', 'HTTPException', ([], {'status_code': '(400)', 'detail': 'f"""Image and Mask have unequal shape. {image.shape} vs {mask.shape}"""'}), False, 'from fastapi import HTTPException\n'), (94, 'tensorflow.Session', 'tf.Session', ([], {'config': 'sess_config'}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.constant', 'tf.constant', (['input_image'], {'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.reverse', 'tf.reverse', (['output', '[-1]'], {}), True, 'import tensorflow as tf\n'), (99, 'tensorflow.saturate_cast', 'tf.saturate_cast', (['output', 'tf.uint8'], {}), True, 'import tensorflow as tf\n'), (101, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.GLOBAL_VARIABLES'], {}), True, 'import tensorflow as tf\n'), (111, 'cv2.imwrite', 'cv2.imwrite', (['"""output.png"""', 'result[0]'], {}), False, 'import cv2\n'), (71, 'numpy.transpose', 'np.transpose', (['image', '(1, 0, 2)'], {}), True, 'import numpy as np\n'), (106, 'tensorflow.contrib.framework.load_variable', 'tf.contrib.framework.load_variable', (['MODEL_DIR', 'from_name'], {}), True, 'import tensorflow as tf\n'), (107, 'tensorflow.assign', 'tf.assign', (['var', 'var_value'], {}), True, 'import tensorflow as tf\n')] |
lywong92/garage | 96cb8887fcae90531a645d540653010e7fe10fcc | """
The local runner for tensorflow algorithms.
A runner setup context for algorithms during initialization and
pipelines data between sampler and algorithm during training.
"""
import copy
import time
from types import SimpleNamespace
from dowel import logger, tabular
import tensorflow as tf
from garage.experiment import snapshotter
# Note: Optional module should be imported ad hoc to break circular dependency.
class LocalRunner:
"""This class implements a local runner for tensorflow algorithms.
A local runner provides a default tensorflow session using python context.
This is useful for those experiment components (e.g. policy) that require a
tensorflow session during construction.
Use Runner.setup(algo, env) to setup algorithm and environement for runner
and Runner.train() to start training.
Examples:
with LocalRunner() as runner:
env = gym.make('CartPole-v1')
policy = CategoricalMLPPolicy(
env_spec=env.spec,
hidden_sizes=(32, 32))
algo = TRPO(
env=env,
policy=policy,
baseline=baseline,
max_path_length=100,
discount=0.99,
max_kl_step=0.01)
runner.setup(algo, env)
runner.train(n_epochs=100, batch_size=4000)
"""
def __init__(self, sess=None, max_cpus=1):
"""Create a new local runner.
Args:
max_cpus(int): The maximum number of parallel sampler workers.
sess(tf.Session): An optional tensorflow session.
A new session will be created immediately if not provided.
Note:
The local runner will set up a joblib task pool of size max_cpus
possibly later used by BatchSampler. If BatchSampler is not used,
the processes in the pool will remain dormant.
This setup is required to use tensorflow in a multiprocess
environment before a tensorflow session is created
because tensorflow is not fork-safe.
See https://github.com/tensorflow/tensorflow/issues/2448.
"""
if max_cpus > 1:
from garage.sampler import singleton_pool
singleton_pool.initialize(max_cpus)
self.sess = sess or tf.Session()
self.sess_entered = False
self.has_setup = False
self.plot = False
self.setup_args = None
self.train_args = None
def __enter__(self):
"""Set self.sess as the default session.
Returns:
This local runner.
"""
if tf.get_default_session() is not self.sess:
self.sess.__enter__()
self.sess_entered = True
return self
def __exit__(self, exc_type, exc_val, exc_tb):
"""Leave session."""
if tf.get_default_session() is self.sess and self.sess_entered:
self.sess.__exit__(exc_type, exc_val, exc_tb)
self.sess_entered = False
def setup(self, algo, env, sampler_cls=None, sampler_args=None):
"""Set up runner for algorithm and environment.
This method saves algo and env within runner and creates a sampler.
Note:
After setup() is called all variables in session should have been
initialized. setup() respects existing values in session so
policy weights can be loaded before setup().
Args:
algo (garage.np.algos.RLAlgorithm): An algorithm instance.
env (garage.envs.GarageEnv): An environement instance.
sampler_cls (garage.sampler.Sampler): A sampler class.
sampler_args (dict): Arguments to be passed to sampler constructor.
"""
self.algo = algo
self.env = env
self.policy = self.algo.policy
if sampler_args is None:
sampler_args = {}
if sampler_cls is None:
from garage.tf.algos.batch_polopt import BatchPolopt
if isinstance(algo, BatchPolopt):
if self.policy.vectorized:
from garage.tf.samplers import OnPolicyVectorizedSampler
sampler_cls = OnPolicyVectorizedSampler
else:
from garage.tf.samplers import BatchSampler
sampler_cls = BatchSampler
else:
from garage.tf.samplers import OffPolicyVectorizedSampler
sampler_cls = OffPolicyVectorizedSampler
self.sampler = sampler_cls(algo, env, **sampler_args)
self.initialize_tf_vars()
logger.log(self.sess.graph)
self.has_setup = True
self.setup_args = SimpleNamespace(
sampler_cls=sampler_cls, sampler_args=sampler_args)
def initialize_tf_vars(self):
"""Initialize all uninitialized variables in session."""
with tf.name_scope('initialize_tf_vars'):
uninited_set = [
e.decode()
for e in self.sess.run(tf.report_uninitialized_variables())
]
self.sess.run(
tf.variables_initializer([
v for v in tf.global_variables()
if v.name.split(':')[0] in uninited_set
]))
def _start_worker(self):
"""Start Plotter and Sampler workers."""
self.sampler.start_worker()
if self.plot:
from garage.tf.plotter import Plotter
self.plotter = Plotter(self.env, self.policy)
self.plotter.start()
def _shutdown_worker(self):
"""Shutdown Plotter and Sampler workers."""
self.sampler.shutdown_worker()
if self.plot:
self.plotter.close()
def obtain_samples(self, itr, batch_size):
"""Obtain one batch of samples.
Args:
itr(int): Index of iteration (epoch).
batch_size(int): Number of steps in batch.
This is a hint that the sampler may or may not respect.
Returns:
One batch of samples.
"""
if self.train_args.n_epoch_cycles == 1:
logger.log('Obtaining samples...')
return self.sampler.obtain_samples(itr, batch_size)
def save(self, epoch, paths=None):
"""Save snapshot of current batch.
Args:
itr(int): Index of iteration (epoch).
paths(dict): Batch of samples after preprocessed. If None,
no paths will be logged to the snapshot.
"""
assert self.has_setup
logger.log('Saving snapshot...')
params = dict()
# Save arguments
params['setup_args'] = self.setup_args
params['train_args'] = self.train_args
# Save states
params['env'] = self.env
params['algo'] = self.algo
if paths:
params['paths'] = paths
params['last_epoch'] = epoch
snapshotter.save_itr_params(epoch, params)
logger.log('Saved')
def restore(self, snapshot_dir, from_epoch='last'):
"""Restore experiment from snapshot.
Args:
snapshot_dir(str): Directory of snapshot.
from_epoch(str or int): The epoch to restore from.
Can be 'first', 'last' or a number.
Not applicable when snapshot_mode='last'.
Returns:
A SimpleNamespace for train()'s arguments.
Examples:
1. Resume experiment immediately.
with LocalRunner() as runner:
runner.restore(snapshot_dir)
runner.resume()
2. Resume experiment with modified training arguments.
with LocalRunner() as runner:
runner.restore(snapshot_dir, resume_now=False)
runner.resume(n_epochs=20)
Note:
When resume via command line, new snapshots will be
saved into the SAME directory if not specified.
When resume programmatically, snapshot directory should be
specify manually or through run_experiment() interface.
"""
snapshotter.snapshot_dir = snapshot_dir
saved = snapshotter.load(from_epoch)
self.setup_args = saved['setup_args']
self.train_args = saved['train_args']
self.setup(
env=saved['env'],
algo=saved['algo'],
sampler_cls=self.setup_args.sampler_cls,
sampler_args=self.setup_args.sampler_args)
n_epochs = self.train_args.n_epochs
last_epoch = saved['last_epoch']
n_epoch_cycles = self.train_args.n_epoch_cycles
batch_size = self.train_args.batch_size
store_paths = self.train_args.store_paths
pause_for_plot = self.train_args.pause_for_plot
fmt = '{:<20} {:<15}'
logger.log('Restore from snapshot saved in %s' % snapshot_dir)
logger.log(fmt.format('Train Args', 'Value'))
logger.log(fmt.format('n_epochs', n_epochs))
logger.log(fmt.format('last_epoch', last_epoch))
logger.log(fmt.format('n_epoch_cycles', n_epoch_cycles))
logger.log(fmt.format('batch_size', batch_size))
logger.log(fmt.format('store_paths', store_paths))
logger.log(fmt.format('pause_for_plot', pause_for_plot))
self.train_args.start_epoch = last_epoch + 1
return copy.copy(self.train_args)
def log_diagnostics(self, pause_for_plot=False):
"""Log diagnostics.
Args:
pause_for_plot(bool): Pause for plot.
"""
logger.log('Time %.2f s' % (time.time() - self._start_time))
logger.log('EpochTime %.2f s' % (time.time() - self._itr_start_time))
logger.log(tabular)
if self.plot:
self.plotter.update_plot(self.policy, self.algo.max_path_length)
if pause_for_plot:
input('Plotting evaluation run: Press Enter to " "continue...')
def train(self,
n_epochs,
batch_size,
n_epoch_cycles=1,
plot=False,
store_paths=False,
pause_for_plot=False):
"""Start training.
Args:
n_epochs(int): Number of epochs.
batch_size(int): Number of environment steps in one batch.
n_epoch_cycles(int): Number of batches of samples in each epoch.
This is only useful for off-policy algorithm.
For on-policy algorithm this value should always be 1.
plot(bool): Visualize policy by doing rollout after each epoch.
store_paths(bool): Save paths in snapshot.
pause_for_plot(bool): Pause for plot.
Returns:
The average return in last epoch cycle.
"""
assert self.has_setup, ('Use Runner.setup() to setup runner before '
'training.')
# Save arguments for restore
self.train_args = SimpleNamespace(
n_epochs=n_epochs,
n_epoch_cycles=n_epoch_cycles,
batch_size=batch_size,
plot=plot,
store_paths=store_paths,
pause_for_plot=pause_for_plot,
start_epoch=0)
self.plot = plot
return self.algo.train(self, batch_size)
def step_epochs(self):
"""Generator for training.
This function serves as a generator. It is used to separate
services such as snapshotting, sampler control from the actual
training loop. It is used inside train() in each algorithm.
The generator initializes two variables: `self.step_itr` and
`self.step_path`. To use the generator, these two have to be
updated manually in each epoch, as the example shows below.
Yields:
int: The next training epoch.
Examples:
for epoch in runner.step_epochs():
runner.step_path = runner.obtain_samples(...)
self.train_once(...)
runner.step_itr += 1
"""
try:
self._start_worker()
self._start_time = time.time()
self.step_itr = (
self.train_args.start_epoch * self.train_args.n_epoch_cycles)
self.step_path = None
for epoch in range(self.train_args.start_epoch,
self.train_args.n_epochs):
self._itr_start_time = time.time()
with logger.prefix('epoch #%d | ' % epoch):
yield epoch
save_path = (self.step_path
if self.train_args.store_paths else None)
self.save(epoch, save_path)
self.log_diagnostics(self.train_args.pause_for_plot)
logger.dump_all(self.step_itr)
tabular.clear()
finally:
self._shutdown_worker()
def resume(self,
n_epochs=None,
batch_size=None,
n_epoch_cycles=None,
plot=None,
store_paths=None,
pause_for_plot=None):
"""Resume from restored experiment.
This method provides the same interface as train().
If not specified, an argument will default to the
saved arguments from the last call to train().
Returns:
The average return in last epoch cycle.
"""
assert self.train_args is not None, (
'You must call restore() before resume().')
self.train_args.n_epochs = n_epochs or self.train_args.n_epochs
self.train_args.batch_size = batch_size or self.train_args.batch_size
self.train_args.n_epoch_cycles = (n_epoch_cycles
or self.train_args.n_epoch_cycles)
if plot is not None:
self.train_args.plot = plot
if store_paths is not None:
self.train_args.store_paths = store_paths
if pause_for_plot is not None:
self.train_args.pause_for_plot = pause_for_plot
return self.algo.train(self, batch_size)
| [
"tensorflow.get_default_session",
"tensorflow.global_variables",
"tensorflow.report_uninitialized_variables",
"tensorflow.name_scope",
"tensorflow.Session"
] | src/garage/experiment/local_tf_runner.py | [(136, 'dowel.logger.log', 'logger.log', (['self.sess.graph'], {}), False, 'from dowel import logger, tabular\n'), (139, 'types.SimpleNamespace', 'SimpleNamespace', ([], {'sampler_cls': 'sampler_cls', 'sampler_args': 'sampler_args'}), False, 'from types import SimpleNamespace\n'), (196, 'dowel.logger.log', 'logger.log', (['"""Saving snapshot..."""'], {}), False, 'from dowel import logger, tabular\n'), (209, 'garage.experiment.snapshotter.save_itr_params', 'snapshotter.save_itr_params', (['epoch', 'params'], {}), False, 'from garage.experiment import snapshotter\n'), (211, 'dowel.logger.log', 'logger.log', (['"""Saved"""'], {}), False, 'from dowel import logger, tabular\n'), (245, 'garage.experiment.snapshotter.load', 'snapshotter.load', (['from_epoch'], {}), False, 'from garage.experiment import snapshotter\n'), (264, 'dowel.logger.log', 'logger.log', (["('Restore from snapshot saved in %s' % snapshot_dir)"], {}), False, 'from dowel import logger, tabular\n'), (274, 'copy.copy', 'copy.copy', (['self.train_args'], {}), False, 'import copy\n'), (285, 'dowel.logger.log', 'logger.log', (['tabular'], {}), False, 'from dowel import logger, tabular\n'), (318, 'types.SimpleNamespace', 'SimpleNamespace', ([], {'n_epochs': 'n_epochs', 'n_epoch_cycles': 'n_epoch_cycles', 'batch_size': 'batch_size', 'plot': 'plot', 'store_paths': 'store_paths', 'pause_for_plot': 'pause_for_plot', 'start_epoch': '(0)'}), False, 'from types import SimpleNamespace\n'), (69, 'garage.sampler.singleton_pool.initialize', 'singleton_pool.initialize', (['max_cpus'], {}), False, 'from garage.sampler import singleton_pool\n'), (70, 'tensorflow.Session', 'tf.Session', ([], {}), True, 'import tensorflow as tf\n'), (85, 'tensorflow.get_default_session', 'tf.get_default_session', ([], {}), True, 'import tensorflow as tf\n'), (144, 'tensorflow.name_scope', 'tf.name_scope', (['"""initialize_tf_vars"""'], {}), True, 'import tensorflow as tf\n'), (160, 'garage.tf.plotter.Plotter', 'Plotter', (['self.env', 'self.policy'], {}), False, 'from garage.tf.plotter import Plotter\n'), (182, 'dowel.logger.log', 'logger.log', (['"""Obtaining samples..."""'], {}), False, 'from dowel import logger, tabular\n'), (354, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (92, 'tensorflow.get_default_session', 'tf.get_default_session', ([], {}), True, 'import tensorflow as tf\n'), (361, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (283, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (284, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (362, 'dowel.logger.prefix', 'logger.prefix', (["('epoch #%d | ' % epoch)"], {}), False, 'from dowel import logger, tabular\n'), (368, 'dowel.logger.dump_all', 'logger.dump_all', (['self.step_itr'], {}), False, 'from dowel import logger, tabular\n'), (369, 'dowel.tabular.clear', 'tabular.clear', ([], {}), False, 'from dowel import logger, tabular\n'), (147, 'tensorflow.report_uninitialized_variables', 'tf.report_uninitialized_variables', ([], {}), True, 'import tensorflow as tf\n'), (151, 'tensorflow.global_variables', 'tf.global_variables', ([], {}), True, 'import tensorflow as tf\n')] |
jason9075/ithome_tensorflow_series | e8f92de2a73a88e7b03a9ac58ece4c4a604f066e | import cv2
import tensorflow as tf
TFRECORD_PATH = '../tfrecord/member.tfrecord'
def main():
data_set = tf.data.TFRecordDataset(TFRECORD_PATH)
data_set = data_set.map(parse_function)
data_set = data_set.shuffle(buffer_size=9)
data_set = data_set.batch(3)
iterator = data_set.make_initializable_iterator()
next_element = iterator.get_next()
with tf.Session() as sess:
sess.run(iterator.initializer)
results, imgs = sess.run(next_element)
print('names: {}'.format(results['member/name']))
print('ages: {}'.format(results['member/age']))
print('heights: {}'.format(results['member/height']))
print('prefer_prods: {}'.format(results['member/prefer_prods']))
for img in imgs:
img = cv2.cvtColor(img, cv2.COLOR_RGB2BGR)
cv2.imshow('img', img)
cv2.waitKey(-1)
def parse_function(example_proto):
features = {'member/name': tf.io.FixedLenFeature([], tf.string),
'member/encoded': tf.io.FixedLenFeature([], tf.string),
'member/age': tf.io.FixedLenFeature([], tf.int64),
'member/height': tf.io.VarLenFeature(tf.float32),
'member/prefer_prods': tf.io.VarLenFeature(tf.int64)}
features = tf.io.parse_single_example(example_proto, features)
images = tf.image.decode_png(features['member/encoded'], channels=3)
# 注意png原本有4個channel，但執行到下面的處理會出錯，所以前一行先降成3個channel。
images = tf.image.random_brightness(images, 0.1)
images = tf.image.random_saturation(images, 0.7, 1.3)
images = tf.image.random_contrast(images, 0.6, 1.5)
images = tf.image.random_flip_left_right(images)
return features, images
if __name__ == '__main__':
main()
| [
"tensorflow.image.random_brightness",
"tensorflow.image.random_contrast",
"tensorflow.image.random_flip_left_right",
"tensorflow.data.TFRecordDataset",
"tensorflow.image.decode_png",
"tensorflow.io.parse_single_example",
"tensorflow.image.random_saturation",
"tensorflow.io.FixedLenFeature",
"tensorflow.io.VarLenFeature",
"tensorflow.Session"
] | 14/record_dataset.py | [(8, 'tensorflow.data.TFRecordDataset', 'tf.data.TFRecordDataset', (['TFRECORD_PATH'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.io.parse_single_example', 'tf.io.parse_single_example', (['example_proto', 'features'], {}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.image.decode_png', 'tf.image.decode_png', (["features['member/encoded']"], {'channels': '(3)'}), True, 'import tensorflow as tf\n'), (40, 'tensorflow.image.random_brightness', 'tf.image.random_brightness', (['images', '(0.1)'], {}), True, 'import tensorflow as tf\n'), (41, 'tensorflow.image.random_saturation', 'tf.image.random_saturation', (['images', '(0.7)', '(1.3)'], {}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.image.random_contrast', 'tf.image.random_contrast', (['images', '(0.6)', '(1.5)'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.image.random_flip_left_right', 'tf.image.random_flip_left_right', (['images'], {}), True, 'import tensorflow as tf\n'), (15, 'tensorflow.Session', 'tf.Session', ([], {}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[]', 'tf.string'], {}), True, 'import tensorflow as tf\n'), (33, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[]', 'tf.string'], {}), True, 'import tensorflow as tf\n'), (34, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[]', 'tf.int64'], {}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.io.VarLenFeature', 'tf.io.VarLenFeature', (['tf.float32'], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.io.VarLenFeature', 'tf.io.VarLenFeature', (['tf.int64'], {}), True, 'import tensorflow as tf\n'), (26, 'cv2.cvtColor', 'cv2.cvtColor', (['img', 'cv2.COLOR_RGB2BGR'], {}), False, 'import cv2\n'), (27, 'cv2.imshow', 'cv2.imshow', (['"""img"""', 'img'], {}), False, 'import cv2\n'), (28, 'cv2.waitKey', 'cv2.waitKey', (['(-1)'], {}), False, 'import cv2\n')] |
kevslinger/stable-baselines | 4bf9f3c1db49f462f5fb35df967d836d92a3dbcd | """Deep Q learning graph
The functions in this file can are used to create the following functions:
======= act ========
Function to chose an action given an observation
:param observation: (Any) Observation that can be feed into the output of make_obs_ph
:param stochastic: (bool) if set to False all the actions are always deterministic (default False)
:param update_eps_ph: (float) update epsilon a new value, if negative not update happens (default: no update)
:return: (TensorFlow Tensor) tensor of dtype tf.int64 and shape (BATCH_SIZE,) with an action to be performed for
every element of the batch.
======= act (in case of parameter noise) ========
Function to chose an action given an observation
:param observation: (Any) Observation that can be feed into the output of make_obs_ph
:param stochastic: (bool) if set to False all the actions are always deterministic (default False)
:param update_eps_ph: (float) update epsilon a new value, if negative not update happens
(default: no update)
:param reset_ph: (bool) reset the perturbed policy by sampling a new perturbation
:param update_param_noise_threshold_ph: (float) the desired threshold for the difference between
non-perturbed and perturbed policy
:param update_param_noise_scale_ph: (bool) whether or not to update the scale of the noise for the next time it is
re-perturbed
:return: (TensorFlow Tensor) tensor of dtype tf.int64 and shape (BATCH_SIZE,) with an action to be performed for
every element of the batch.
======= train =======
Function that takes a transition (s,a,r,s') and optimizes Bellman equation's error:
td_error = Q(s,a) - (r + gamma * max_a' Q(s', a'))
loss = huber_loss[td_error]
:param obs_t: (Any) a batch of observations
:param action: (numpy int) actions that were selected upon seeing obs_t. dtype must be int32 and shape must be
(batch_size,)
:param reward: (numpy float) immediate reward attained after executing those actions dtype must be float32 and
shape must be (batch_size,)
:param obs_tp1: (Any) observations that followed obs_t
:param done: (numpy bool) 1 if obs_t was the last observation in the episode and 0 otherwise obs_tp1 gets ignored,
but must be of the valid shape. dtype must be float32 and shape must be (batch_size,)
:param weight: (numpy float) imporance weights for every element of the batch (gradient is multiplied by the
importance weight) dtype must be float32 and shape must be (batch_size,)
:return: (numpy float) td_error: a list of differences between Q(s,a) and the target in Bellman's equation.
dtype is float32 and shape is (batch_size,)
======= update_target ========
copy the parameters from optimized Q function to the target Q function.
In Q learning we actually optimize the following error:
Q(s,a) - (r + gamma * max_a' Q'(s', a'))
Where Q' is lagging behind Q to stablize the learning. For example for Atari
Q' is set to Q once every 10000 updates training steps.
"""
import tensorflow as tf
from gym.spaces import MultiDiscrete
from stable_baselines.common import tf_util
def scope_vars(scope, trainable_only=False):
"""
Get variables inside a scope
The scope can be specified as a string
:param scope: (str or VariableScope) scope in which the variables reside.
:param trainable_only: (bool) whether or not to return only the variables that were marked as trainable.
:return: ([TensorFlow Tensor]) vars: list of variables in `scope`.
"""
return tf.get_collection(
tf.GraphKeys.TRAINABLE_VARIABLES if trainable_only else tf.GraphKeys.GLOBAL_VARIABLES,
scope=scope if isinstance(scope, str) else scope.name
)
def scope_name():
"""
Returns the name of current scope as a string, e.g. deepq/q_func
:return: (str) the name of current scope
"""
return tf.get_variable_scope().name
def absolute_scope_name(relative_scope_name):
"""
Appends parent scope name to `relative_scope_name`
:return: (str) the absolute name of the scope
"""
return scope_name() + "/" + relative_scope_name
def default_param_noise_filter(var):
"""
check whether or not a variable is perturbable or not
:param var: (TensorFlow Tensor) the variable
:return: (bool) can be perturb
"""
if var not in tf.trainable_variables():
# We never perturb non-trainable vars.
return False
if "fully_connected" in var.name:
# We perturb fully-connected layers.
return True
# The remaining layers are likely conv or layer norm layers, which we do not wish to
# perturb (in the former case because they only extract features, in the latter case because
# we use them for normalization purposes). If you change your network, you will likely want
# to re-consider which layers to perturb and which to keep untouched.
return False
def build_act(q_func, ob_space, ac_space, stochastic_ph, update_eps_ph, sess, layers=None):
"""
Creates the act function:
:param q_func: (DQNPolicy) the policy
:param ob_space: (Gym Space) The observation space of the environment
:param ac_space: (Gym Space) The action space of the environment
:param stochastic_ph: (TensorFlow Tensor) the stochastic placeholder
:param update_eps_ph: (TensorFlow Tensor) the update_eps placeholder
:param sess: (TensorFlow session) The current TensorFlow session
:return: (function (TensorFlow Tensor, bool, float): TensorFlow Tensor, (TensorFlow Tensor, TensorFlow Tensor)
act function to select and action given observation (See the top of the file for details),
A tuple containing the observation placeholder and the processed observation placeholder respectively.
"""
eps = tf.get_variable("eps", (), initializer=tf.constant_initializer(0))
policy = q_func(sess, ob_space, ac_space, 1, 1, None, layers=layers)
obs_phs = (policy.obs_ph, policy.processed_obs)
deterministic_actions = tf.argmax(policy.q_values, axis=1)
#########################
### KEVIN UPDATE ########
### GIMME DAT PRINTS ####
#########################
print("Hello yes I am in build_act without noise")
print(f"Obs space: {ob_space}")
print(f"policy.obs_ph: {policy.obs_ph}")
print(f"policy.processed_obs: {policy.processed_obs}")
print(f"Obs_phs space: {obs_phs}")
#assert 5 == 1
#######################
for var in tf.all_variables():
print(var)
batch_size = tf.shape(policy.obs_ph)[0]
n_actions = ac_space.nvec if isinstance(ac_space, MultiDiscrete) else ac_space.n
random_actions = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=n_actions, dtype=tf.int64)
chose_random = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=1, dtype=tf.float32) < eps
stochastic_actions = tf.where(chose_random, random_actions, deterministic_actions)
output_actions = tf.cond(stochastic_ph, lambda: stochastic_actions, lambda: deterministic_actions)
update_eps_expr = eps.assign(tf.cond(update_eps_ph >= 0, lambda: update_eps_ph, lambda: eps))
_act = tf_util.function(inputs=[policy.obs_ph, stochastic_ph, update_eps_ph],
outputs=output_actions,
givens={update_eps_ph: -1.0, stochastic_ph: True},
updates=[update_eps_expr])
def act(obs, stochastic=True, update_eps=-1):
return _act(obs, stochastic, update_eps)
return act, obs_phs
def build_act_with_param_noise(q_func, ob_space, ac_space, stochastic_ph, update_eps_ph, sess,
param_noise_filter_func=None):
"""
Creates the act function with support for parameter space noise exploration (https://arxiv.org/abs/1706.01905):
:param q_func: (DQNPolicy) the policy
:param ob_space: (Gym Space) The observation space of the environment
:param ac_space: (Gym Space) The action space of the environment
:param stochastic_ph: (TensorFlow Tensor) the stochastic placeholder
:param update_eps_ph: (TensorFlow Tensor) the update_eps placeholder
:param sess: (TensorFlow session) The current TensorFlow session
:param param_noise_filter_func: (function (TensorFlow Tensor): bool) function that decides whether or not a
variable should be perturbed. Only applicable if param_noise is True. If set to None, default_param_noise_filter
is used by default.
:return: (function (TensorFlow Tensor, bool, float): TensorFlow Tensor, (TensorFlow Tensor, TensorFlow Tensor)
act function to select and action given observation (See the top of the file for details),
A tuple containing the observation placeholder and the processed observation placeholder respectively.
"""
if param_noise_filter_func is None:
param_noise_filter_func = default_param_noise_filter
update_param_noise_threshold_ph = tf.placeholder(tf.float32, (), name="update_param_noise_threshold")
update_param_noise_scale_ph = tf.placeholder(tf.bool, (), name="update_param_noise_scale")
reset_ph = tf.placeholder(tf.bool, (), name="reset")
eps = tf.get_variable("eps", (), initializer=tf.constant_initializer(0))
param_noise_scale = tf.get_variable("param_noise_scale", (), initializer=tf.constant_initializer(0.01),
trainable=False)
param_noise_threshold = tf.get_variable("param_noise_threshold", (), initializer=tf.constant_initializer(0.05),
trainable=False)
# Unmodified Q.
policy = q_func(sess, ob_space, ac_space, 1, 1, None)
obs_phs = (policy.obs_ph, policy.processed_obs)
# Perturbable Q used for the actual rollout.
with tf.variable_scope("perturbed_model", reuse=False):
perturbable_policy = q_func(sess, ob_space, ac_space, 1, 1, None, obs_phs=obs_phs)
def perturb_vars(original_scope, perturbed_scope):
"""
We have to wrap this code into a function due to the way tf.cond() works.
See https://stackoverflow.com/questions/37063952/confused-by-the-behavior-of-tf-cond for a more detailed
discussion.
:param original_scope: (str or VariableScope) the original scope.
:param perturbed_scope: (str or VariableScope) the perturbed scope.
:return: (TensorFlow Operation)
"""
all_vars = scope_vars(absolute_scope_name(original_scope))
all_perturbed_vars = scope_vars(absolute_scope_name(perturbed_scope))
assert len(all_vars) == len(all_perturbed_vars)
perturb_ops = []
for var, perturbed_var in zip(all_vars, all_perturbed_vars):
if param_noise_filter_func(perturbed_var):
# Perturb this variable.
operation = tf.assign(perturbed_var,
var + tf.random_normal(shape=tf.shape(var), mean=0.,
stddev=param_noise_scale))
else:
# Do not perturb, just assign.
operation = tf.assign(perturbed_var, var)
perturb_ops.append(operation)
assert len(perturb_ops) == len(all_vars)
return tf.group(*perturb_ops)
# Set up functionality to re-compute `param_noise_scale`. This perturbs yet another copy
# of the network and measures the effect of that perturbation in action space. If the perturbation
# is too big, reduce scale of perturbation, otherwise increase.
with tf.variable_scope("adaptive_model", reuse=False):
adaptive_policy = q_func(sess, ob_space, ac_space, 1, 1, None, obs_phs=obs_phs)
perturb_for_adaption = perturb_vars(original_scope="model", perturbed_scope="adaptive_model/model")
kl_loss = tf.reduce_sum(
tf.nn.softmax(policy.q_values) *
(tf.log(tf.nn.softmax(policy.q_values)) - tf.log(tf.nn.softmax(adaptive_policy.q_values))),
axis=-1)
mean_kl = tf.reduce_mean(kl_loss)
def update_scale():
"""
update the scale expression
:return: (TensorFlow Tensor) the updated scale expression
"""
with tf.control_dependencies([perturb_for_adaption]):
update_scale_expr = tf.cond(mean_kl < param_noise_threshold,
lambda: param_noise_scale.assign(param_noise_scale * 1.01),
lambda: param_noise_scale.assign(param_noise_scale / 1.01),
)
return update_scale_expr
# Functionality to update the threshold for parameter space noise.
update_param_noise_thres_expr = param_noise_threshold.assign(
tf.cond(update_param_noise_threshold_ph >= 0, lambda: update_param_noise_threshold_ph,
lambda: param_noise_threshold))
# Put everything together.
perturbed_deterministic_actions = tf.argmax(perturbable_policy.q_values, axis=1)
deterministic_actions = tf.argmax(policy.q_values, axis=1)
batch_size = tf.shape(policy.obs_ph)[0]
n_actions = ac_space.nvec if isinstance(ac_space, MultiDiscrete) else ac_space.n
random_actions = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=n_actions, dtype=tf.int64)
chose_random = tf.random_uniform(tf.stack([batch_size]), minval=0, maxval=1, dtype=tf.float32) < eps
perturbed_stochastic_actions = tf.where(chose_random, random_actions, perturbed_deterministic_actions)
stochastic_actions = tf.where(chose_random, random_actions, deterministic_actions)
perturbed_output_actions = tf.cond(stochastic_ph, lambda: perturbed_stochastic_actions,
lambda: deterministic_actions)
output_actions = tf.cond(stochastic_ph, lambda: stochastic_actions, lambda: deterministic_actions)
update_eps_expr = eps.assign(tf.cond(update_eps_ph >= 0, lambda: update_eps_ph, lambda: eps))
updates = [
update_eps_expr,
tf.cond(reset_ph, lambda: perturb_vars(original_scope="model", perturbed_scope="perturbed_model/model"),
lambda: tf.group(*[])),
tf.cond(update_param_noise_scale_ph, lambda: update_scale(), lambda: tf.Variable(0., trainable=False)),
update_param_noise_thres_expr,
]
_act = tf_util.function(inputs=[policy.obs_ph, stochastic_ph, update_eps_ph],
outputs=output_actions,
givens={update_eps_ph: -1.0, stochastic_ph: True},
updates=[update_eps_expr])
_perturbed_act = tf_util.function(
inputs=[policy.obs_ph, stochastic_ph, update_eps_ph, reset_ph, update_param_noise_threshold_ph,
update_param_noise_scale_ph],
outputs=perturbed_output_actions,
givens={update_eps_ph: -1.0, stochastic_ph: True, reset_ph: False, update_param_noise_threshold_ph: False,
update_param_noise_scale_ph: False},
updates=updates)
def act(obs, reset=None, update_param_noise_threshold=None, update_param_noise_scale=None, stochastic=True,
update_eps=-1):
"""
get the action from the current observation
:param obs: (Any) Observation that can be feed into the output of make_obs_ph
:param reset: (bool) reset the perturbed policy by sampling a new perturbation
:param update_param_noise_threshold: (float) the desired threshold for the difference between
non-perturbed and perturbed policy
:param update_param_noise_scale: (bool) whether or not to update the scale of the noise for the next time
it is re-perturbed
:param stochastic: (bool) if set to False all the actions are always deterministic (default False)
:param update_eps: (float) update epsilon a new value, if negative not update happens
(default: no update)
:return: (TensorFlow Tensor) tensor of dtype tf.int64 and shape (BATCH_SIZE,) with an action to be
performed for every element of the batch.
"""
if reset is None or update_param_noise_threshold is None or update_param_noise_scale is None:
return _act(obs, stochastic, update_eps)
else:
return _perturbed_act(obs, stochastic, update_eps, reset, update_param_noise_threshold,
update_param_noise_scale)
return act, obs_phs
def build_train(q_func, ob_space, ac_space, optimizer, sess, grad_norm_clipping=None,
gamma=1.0, double_q=True, scope="deepq", reuse=None,
param_noise=False, param_noise_filter_func=None, full_tensorboard_log=False, layers=None):
"""
Creates the train function:
:param q_func: (DQNPolicy) the policy
:param ob_space: (Gym Space) The observation space of the environment
:param ac_space: (Gym Space) The action space of the environment
:param reuse: (bool) whether or not to reuse the graph variables
:param optimizer: (tf.train.Optimizer) optimizer to use for the Q-learning objective.
:param sess: (TensorFlow session) The current TensorFlow session
:param grad_norm_clipping: (float) clip gradient norms to this value. If None no clipping is performed.
:param gamma: (float) discount rate.
:param double_q: (bool) if true will use Double Q Learning (https://arxiv.org/abs/1509.06461). In general it is a
good idea to keep it enabled.
:param scope: (str or VariableScope) optional scope for variable_scope.
:param reuse: (bool) whether or not the variables should be reused. To be able to reuse the scope must be given.
:param param_noise: (bool) whether or not to use parameter space noise (https://arxiv.org/abs/1706.01905)
:param param_noise_filter_func: (function (TensorFlow Tensor): bool) function that decides whether or not a
variable should be perturbed. Only applicable if param_noise is True. If set to None, default_param_noise_filter
is used by default.
:param full_tensorboard_log: (bool) enable additional logging when using tensorboard
WARNING: this logging can take a lot of space quickly
:return: (tuple)
act: (function (TensorFlow Tensor, bool, float): TensorFlow Tensor) function to select and action given
observation. See the top of the file for details.
train: (function (Any, numpy float, numpy float, Any, numpy bool, numpy float): numpy float)
optimize the error in Bellman's equation. See the top of the file for details.
update_target: (function) copy the parameters from optimized Q function to the target Q function.
See the top of the file for details.
step_model: (DQNPolicy) Policy for evaluation
"""
n_actions = ac_space.nvec if isinstance(ac_space, MultiDiscrete) else ac_space.n
with tf.variable_scope("input", reuse=reuse):
stochastic_ph = tf.placeholder(tf.bool, (), name="stochastic")
update_eps_ph = tf.placeholder(tf.float32, (), name="update_eps")
with tf.variable_scope(scope, reuse=reuse):
if param_noise:
act_f, obs_phs = build_act_with_param_noise(q_func, ob_space, ac_space, stochastic_ph, update_eps_ph, sess,
param_noise_filter_func=param_noise_filter_func)
else:
act_f, obs_phs = build_act(q_func, ob_space, ac_space, stochastic_ph, update_eps_ph, sess, layers=layers)
# q network evaluation
with tf.variable_scope("step_model", reuse=True, custom_getter=tf_util.outer_scope_getter("step_model")):
step_model = q_func(sess, ob_space, ac_space, 1, 1, None, reuse=True, obs_phs=obs_phs, layers=layers)
q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=tf.get_variable_scope().name + "/model")
# target q network evaluation
with tf.variable_scope("target_q_func", reuse=False):
target_policy = q_func(sess, ob_space, ac_space, 1, 1, None, reuse=False, layers=layers)
target_q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES,
scope=tf.get_variable_scope().name + "/target_q_func")
# compute estimate of best possible value starting from state at t + 1
double_q_values = None
double_obs_ph = target_policy.obs_ph
if double_q:
with tf.variable_scope("double_q", reuse=True, custom_getter=tf_util.outer_scope_getter("double_q")):
double_policy = q_func(sess, ob_space, ac_space, 1, 1, None, reuse=True, layers=layers)
double_q_values = double_policy.q_values
double_obs_ph = double_policy.obs_ph
with tf.variable_scope("loss", reuse=reuse):
# set up placeholders
act_t_ph = tf.placeholder(tf.int32, [None], name="action")
rew_t_ph = tf.placeholder(tf.float32, [None], name="reward")
done_mask_ph = tf.placeholder(tf.float32, [None], name="done")
importance_weights_ph = tf.placeholder(tf.float32, [None], name="weight")
# q scores for actions which we know were selected in the given state.
q_t_selected = tf.reduce_sum(step_model.q_values * tf.one_hot(act_t_ph, n_actions), axis=1)
# compute estimate of best possible value starting from state at t + 1
if double_q:
q_tp1_best_using_online_net = tf.argmax(double_q_values, axis=1)
q_tp1_best = tf.reduce_sum(target_policy.q_values * tf.one_hot(q_tp1_best_using_online_net, n_actions), axis=1)
else:
q_tp1_best = tf.reduce_max(target_policy.q_values, axis=1)
q_tp1_best_masked = (1.0 - done_mask_ph) * q_tp1_best
# compute RHS of bellman equation
q_t_selected_target = rew_t_ph + gamma * q_tp1_best_masked
# compute the error (potentially clipped)
td_error = q_t_selected - tf.stop_gradient(q_t_selected_target)
errors = tf_util.huber_loss(td_error)
weighted_error = tf.reduce_mean(importance_weights_ph * errors)
tf.summary.scalar("td_error", tf.reduce_mean(td_error))
tf.summary.scalar("loss", weighted_error)
if full_tensorboard_log:
tf.summary.histogram("td_error", td_error)
# update_target_fn will be called periodically to copy Q network to target Q network
update_target_expr = []
for var, var_target in zip(sorted(q_func_vars, key=lambda v: v.name),
sorted(target_q_func_vars, key=lambda v: v.name)):
update_target_expr.append(var_target.assign(var))
update_target_expr = tf.group(*update_target_expr)
# compute optimization op (potentially with gradient clipping)
gradients = optimizer.compute_gradients(weighted_error, var_list=q_func_vars)
if grad_norm_clipping is not None:
for i, (grad, var) in enumerate(gradients):
if grad is not None:
gradients[i] = (tf.clip_by_norm(grad, grad_norm_clipping), var)
with tf.variable_scope("input_info", reuse=False):
tf.summary.scalar('rewards', tf.reduce_mean(rew_t_ph))
tf.summary.scalar('importance_weights', tf.reduce_mean(importance_weights_ph))
if full_tensorboard_log:
tf.summary.histogram('rewards', rew_t_ph)
tf.summary.histogram('importance_weights', importance_weights_ph)
if tf_util.is_image(obs_phs[0]):
tf.summary.image('observation', obs_phs[0])
elif len(obs_phs[0].shape) == 1:
tf.summary.histogram('observation', obs_phs[0])
optimize_expr = optimizer.apply_gradients(gradients)
summary = tf.summary.merge_all()
# Create callable functions
train = tf_util.function(
inputs=[
obs_phs[0],
act_t_ph,
rew_t_ph,
target_policy.obs_ph,
double_obs_ph,
done_mask_ph,
importance_weights_ph
],
outputs=[summary, td_error],
updates=[optimize_expr]
)
update_target = tf_util.function([], [], updates=[update_target_expr])
return act_f, train, update_target, step_model
| [
"tensorflow.cond",
"tensorflow.control_dependencies",
"tensorflow.stack",
"tensorflow.where",
"tensorflow.group",
"tensorflow.summary.scalar",
"tensorflow.all_variables",
"tensorflow.Variable",
"tensorflow.summary.image",
"tensorflow.stop_gradient",
"tensorflow.clip_by_norm",
"tensorflow.trainable_variables",
"tensorflow.argmax",
"tensorflow.shape",
"tensorflow.placeholder",
"tensorflow.summary.merge_all",
"tensorflow.one_hot",
"tensorflow.summary.histogram",
"tensorflow.reduce_max",
"tensorflow.nn.softmax",
"tensorflow.reduce_mean",
"tensorflow.assign",
"tensorflow.constant_initializer",
"tensorflow.variable_scope",
"tensorflow.get_variable_scope"
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hssinejihene/deepchem-1.1.0 | 6efbe6b638b77bb2685ac617f4d6649755c01335 | """Ops for graph construction.
Large amounts of code borrowed from Keras. Will try to incorporate into
DeepChem properly.
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
import os
import sys
import traceback
import numpy as np
import tensorflow as tf
from tensorflow.python.training import moving_averages
from collections import defaultdict
# TODO(rbharath): What does this line do?
py_all = all
# TODO(rbharath): REMOVE GLOBAL VARS! BREAKS DEEPCHEM STYLE!
_UID_PREFIXES = defaultdict(int)
# This dictionary holds a mapping {graph: learning_phase}.
# A learning phase is a bool tensor used to run Keras models in
# either train mode (learning_phase == 1) or test mode (learning_phase == 0).
_GRAPH_LEARNING_PHASES = {}
def _to_tensor(x, dtype):
x = tf.convert_to_tensor(x)
if x.dtype != dtype:
x = tf.cast(x, dtype)
return x
def learning_phase():
"""Returns the learning phase flag.
The learning phase flag is a bool tensor (0 = test, 1 = train)
to be passed as input to any Keras function
that uses a different behavior at train time and test time.
"""
graph = tf.get_default_graph()
if graph not in _GRAPH_LEARNING_PHASES:
phase = tf.placeholder(dtype='bool', name='keras_learning_phase')
_GRAPH_LEARNING_PHASES[graph] = phase
return _GRAPH_LEARNING_PHASES[graph]
def in_train_phase(x, alt):
"""Selects `x` in train phase, and `alt` otherwise.
Note that `alt` should have the *same shape* as `x`.
Returns
-------
Either `x` or `alt` based on `K.learning_phase`.
"""
if learning_phase() is 1:
return x
elif learning_phase() is 0:
return alt
# else: assume learning phase is a placeholder tensor.
x = switch(learning_phase(), x, alt)
x._uses_learning_phase = True
return x
def switch(condition, then_expression, else_expression):
"""Switches between two operations
depending on a scalar value (`int` or `bool`).
Note that both `then_expression` and `else_expression`
should be symbolic tensors of the *same shape*.
Parameters
----------
condition: scalar tensor.
then_expression: either a tensor, or a callable that returns a tensor.
else_expression: either a tensor, or a callable that returns a tensor.
Returns
-------
The selected tensor.
"""
if condition.dtype != tf.bool:
condition = tf.cast(condition, 'bool')
if not callable(then_expression):
def then_expression_fn():
return then_expression
else:
then_expression_fn = then_expression
if not callable(else_expression):
def else_expression_fn():
return else_expression
else:
else_expression_fn = else_expression
x = tf.cond(condition, then_expression_fn, else_expression_fn)
return x
def normalize_batch_in_training(x, gamma, beta, reduction_axes, epsilon=1e-3):
"""Computes mean and std for batch then apply batch_normalization on batch.
Returns
-------
A tuple length of 3, (normalized_tensor, mean, variance).
"""
mean, var = tf.nn.moments(
x, reduction_axes, shift=None, name=None, keep_dims=False)
if sorted(reduction_axes) == range(ndim(x))[:-1]:
normed = tf.nn.batch_normalization(x, mean, var, beta, gamma, epsilon)
else:
# need broadcasting
target_shape = []
for axis in range(get_ndim(x)):
if axis in reduction_axes:
target_shape.append(1)
else:
target_shape.append(tf.shape(x)[axis])
target_shape = stack(target_shape)
broadcast_mean = tf.reshape(mean, target_shape)
broadcast_var = tf.reshape(var, target_shape)
broadcast_gamma = tf.reshape(gamma, target_shape)
broadcast_beta = tf.reshape(beta, target_shape)
normed = tf.nn.batch_normalization(x, broadcast_mean, broadcast_var,
broadcast_beta, broadcast_gamma, epsilon)
return normed, mean, var
def ones(shape, dtype=None, name=None):
"""Instantiates an all-ones tensor variable and returns it.
Parameters
----------
shape: Tuple of integers, shape of returned Keras variable.
dtype: Tensorflow dtype
name: String, name of returned Keras variable.
Returns
-------
A Keras variable, filled with `1.0`.
"""
if dtype is None:
dtype = tf.float32
shape = tuple(map(int, shape))
return tf.Variable(
tf.constant_initializer(1., dtype=dtype)(shape), dtype, name)
def cast_to_floatx(x):
"""Cast a Numpy array to the default Keras float type.
Parameters
----------
x: Numpy array.
Returns
-------
The same Numpy array, cast to its new type.
"""
return np.asarray(x, dtype=tf.float32)
def moving_average_update(variable, value, momentum):
try:
return moving_averages.assign_moving_average(
variable, value, momentum, zero_debias=False)
except TypeError:
return moving_averages.assign_moving_average(variable, value, momentum)
def int_shape(x):
"""Returns the shape of a Keras tensor or a Keras variable as a tuple of
integers or None entries.
Arguments
---------
x: Tensor or variable.
Returns
-------
A tuple of integers (or None entries).
"""
shape = x.get_shape()
return tuple([i.__int__() for i in shape])
def get_uid(prefix=''):
"""Provides a unique UID given a string prefix.
Parameters
----------
prefix: string.
Returns
-------
An integer.
"""
_UID_PREFIXES[prefix] += 1
return _UID_PREFIXES[prefix]
def concatenate(tensors, axis=-1):
"""Concatenates a list of tensors alongside the specified axis.
Returns
-------
A tensor.
"""
if axis < 0:
dims = get_ndim(tensors[0])
if dims:
axis = axis % dims
else:
axis = 0
try:
return tf.concat_v2([x for x in tensors], axis)
except AttributeError:
return tf.concat(axis=axis, values=[x for x in tensors])
def _normalize_axis(axis, ndim):
if isinstance(axis, tuple):
axis = list(axis)
if isinstance(axis, list):
for i, a in enumerate(axis):
if a is not None and a < 0:
axis[i] = a % ndim
else:
if axis is not None and axis < 0:
axis = axis % ndim
return axis
def mean(x, axis=None, keepdims=False):
"""Mean of a tensor, alongside the specified axis.
Parameters
----------
x: A tensor or variable.
axis: A list of integer. Axes to compute the mean.
keepdims: A boolean, whether to keep the dimensions or not.
If keepdims is False, the rank of the tensor is reduced
by 1 for each entry in axis. If keep_dims is True,
the reduced dimensions are retained with length 1.
Returns
-------
A tensor with the mean of elements of x.
"""
axis = _normalize_axis(axis, get_ndim(x))
if x.dtype.base_dtype == tf.bool:
x = tf.cast(x, tf.float32)
return tf.reduce_mean(x, axis=axis, keep_dims=keepdims)
def dot(x, y):
"""Multiplies 2 tensors (and/or variables) and returns a *tensor*.
When attempting to multiply a ND tensor
with a ND tensor, it reproduces the Theano behavior.
(e.g. (2, 3).(4, 3, 5) = (2, 4, 5))
Parameters
----------
x: Tensor or variable.
y: Tensor or variable.
Returns
-------
A tensor, dot product of x and y.
"""
if get_ndim(x) is not None and (get_ndim(x) > 2 or get_ndim(y) > 2):
x_shape = []
for i, s in zip(int_shape(x), tf.unstack(tf.shape(x))):
if i is not None:
x_shape.append(i)
else:
x_shape.append(s)
x_shape = tuple(x_shape)
y_shape = []
for i, s in zip(int_shape(y), tf.unstack(tf.shape(y))):
if i is not None:
y_shape.append(i)
else:
y_shape.append(s)
y_shape = tuple(y_shape)
y_permute_dim = list(range(get_ndim(y)))
y_permute_dim = [y_permute_dim.pop(-2)] + y_permute_dim
xt = tf.reshape(x, [-1, x_shape[-1]])
yt = tf.reshape(tf.transpose(y, perm=y_permute_dim), [y_shape[-2], -1])
return tf.reshape(
tf.matmul(xt, yt), x_shape[:-1] + y_shape[:-2] + y_shape[-1:])
out = tf.matmul(x, y)
return out
def get_ndim(x):
"""Returns the number of axes in a tensor, as an integer.
Parameters
----------
x: Tensor or variable.
Returns
-------
Integer (scalar), number of axes.
"""
dims = x.get_shape()._dims
if dims is not None:
return len(dims)
return None
def get_dtype(x):
"""Returns the dtype of a Keras tensor or variable, as a string.
Parameters
----------
x: Tensor or variable.
Returns
-------
String, dtype of `x`.
"""
return x.dtype.name
def clip(x, min_value, max_value):
"""Element-wise value clipping.
Returns
-------
A tensor.
"""
if max_value is not None and max_value < min_value:
max_value = min_value
min_value = _to_tensor(min_value, x.dtype.base_dtype)
max_value = _to_tensor(max_value, x.dtype.base_dtype)
return tf.clip_by_value(x, min_value, max_value)
def epsilon():
"""Returns the value of the fuzz
factor used in numeric expressions.
Returns
-------
A float.
"""
return 1e-7
def random_uniform_variable(shape,
low,
high,
dtype=tf.float32,
name=None,
seed=None):
"""Instantiates an variable filled with
samples drawn from a uniform distribution and returns it.
Parameters
----------
shape: Tuple of integers, shape of returned variable.
low: Float, lower boundary of the output inteval.
high: Float, upper boundary of the output interval.
dtype: Tensorflow dtype
name: String, name of returned variable.
seed: Integer, random seed.
Returns
-------
A tf.Variable, filled with drawn samples.
"""
shape = tuple(map(int, shape))
if seed is None:
# ensure that randomness is conditioned by the Numpy RNG
seed = np.random.randint(10e8)
value = tf.random_uniform_initializer(
low, high, dtype=dtype, seed=seed)(shape)
return tf.Variable(value, dtype=dtype, name=name)
def random_normal_variable(shape,
mean,
scale,
dtype=tf.float32,
name=None,
seed=None):
"""Instantiates an Keras variable filled with
samples drawn from a normal distribution and returns it.
Parameters
----------
shape: Tuple of integers, shape of returned Keras variable.
mean: Float, mean of the normal distribution.
scale: Float, standard deviation of the normal distribution.
dtype: Tensorflow dtype
name: String, name of returned Keras variable.
seed: Integer, random seed.
Returns
-------
A tf.Variable, filled with drawn samples.
"""
shape = tuple(map(int, shape))
if seed is None:
# ensure that randomness is conditioned by the Numpy RNG
seed = np.random.randint(10e8)
value = tf.random_normal_initializer(
mean, scale, dtype=dtype, seed=seed)(shape)
return tf.Variable(value, dtype=dtype, name=name)
def max(x, axis=None, keepdims=False):
"""Maximum value in a tensor.
Parameters
----------
x: A tensor or variable.
axis: An integer, the axis to find maximum values.
keepdims: A boolean, whether to keep the dimensions or not.
If `keepdims` is `False`, the rank of the tensor is reduced
by 1. If `keepdims` is `True`,
the reduced dimension is retained with length 1.
Returns
-------
A tensor with maximum values of `x`.
"""
axis = _normalize_axis(axis, get_ndim(x))
return tf.reduce_max(x, axis=axis, keep_dims=keepdims)
def l2_normalize(x, axis):
"""Normalizes a tensor wrt the L2 norm alongside the specified axis.
Parameters
----------
x: input tensor.
axis: axis along which to perform normalization.
Returns
-------
A tensor.
"""
if axis < 0:
axis = axis % len(x.get_shape())
return tf.nn.l2_normalize(x, dim=axis)
def categorical_crossentropy(output, target, from_logits=False):
"""Categorical crossentropy between an output tensor
and a target tensor, where the target is a tensor of the same
shape as the output.
# TODO(rbharath): Should probably swap this over to tf mode.
"""
# Note: tf.nn.softmax_cross_entropy_with_logits
# expects logits, Keras expects probabilities.
if not from_logits:
# scale preds so that the class probas of each sample sum to 1
output /= tf.reduce_sum(
output, axis=len(output.get_shape()) - 1, keep_dims=True)
# manual computation of crossentropy
epsilon = _to_tensor(_EPSILON, output.dtype.base_dtype)
output = tf.clip_by_value(output, epsilon, 1. - epsilon)
return -tf.reduce_sum(
target * tf.log(output), axis=len(output.get_shape()) - 1)
else:
try:
return tf.nn.softmax_cross_entropy_with_logits(
labels=target, logits=output)
except TypeError:
return tf.nn.softmax_cross_entropy_with_logits(
logits=output, labels=target)
def sparse_categorical_crossentropy(output, target, from_logits=False):
"""Categorical crossentropy between an output tensor
and a target tensor, where the target is an integer tensor.
"""
# Note: tf.nn.softmax_cross_entropy_with_logits
# expects logits, Keras expects probabilities.
if not from_logits:
epsilon = _to_tensor(_EPSILON, output.dtype.base_dtype)
output = tf.clip_by_value(output, epsilon, 1 - epsilon)
output = tf.log(output)
output_shape = output.get_shape()
targets = cast(flatten(target), 'int64')
logits = tf.reshape(output, [-1, int(output_shape[-1])])
try:
res = tf.nn.sparse_softmax_cross_entropy_with_logits(
labels=targets, logits=logits)
except TypeError:
res = tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=logits, labels=targets)
if len(output_shape) == 3:
# if our output includes timesteps we need to reshape
return tf.reshape(res, tf.shape(output)[:-1])
else:
return res
def binary_crossentropy(output, target, from_logits=False):
"""Binary crossentropy between an output tensor and a target tensor.
# Arguments
output: A tensor.
target: A tensor with the same shape as `output`.
from_logits: Whether `output` is expected to be a logits tensor.
By default, we consider that `output`
encodes a probability distribution.
# Returns
A tensor.
"""
# Note: tf.nn.softmax_cross_entropy_with_logits
# expects logits, Keras expects probabilities.
if not from_logits:
# transform back to logits
epsilon = _to_tensor(_EPSILON, output.dtype.base_dtype)
output = tf.clip_by_value(output, epsilon, 1 - epsilon)
output = tf.log(output / (1 - output))
try:
return tf.nn.sigmoid_cross_entropy_with_logits(labels=target, logits=output)
except TypeError:
return tf.nn.sigmoid_cross_entropy_with_logits(logits=output, labels=target)
def sum(x, axis=None, keepdims=False):
"""Sum of the values in a tensor, alongside the specified axis.
Parameters
----------
x: A tensor or variable.
axis: An integer, the axis to sum over.
keepdims: A boolean, whether to keep the dimensions or not.
If keepdims is False, the rank of the tensor is reduced
by 1. If keepdims is True,
the reduced dimension is retained with length 1.
Returns
-------
A tensor with sum of x.
"""
axis = _normalize_axis(axis, get_ndim(x))
return tf.reduce_sum(x, axis=axis, keep_dims=keepdims)
# TODO(rbharath): Need to rename this. This makes a variable, not just creates
# a tensor. Confusing with tf.zeros...
def zeros(shape, dtype=tf.float32, name=None):
"""Instantiates an all-zeros variable and returns it.
Parameters
----------
shape: Tuple of integers, shape of returned Keras variable
dtype: Tensorflow dtype
name: String, name of returned Keras variable
Returns
-------
A variable (including Keras metadata), filled with `0.0`.
"""
shape = tuple(map(int, shape))
return tf.Variable(
tf.constant_initializer(0., dtype=dtype)(shape), dtype, name)
def cosine_distances(test, support):
"""Computes pairwise cosine distances between provided tensors
Parameters
----------
test: tf.Tensor
Of shape (n_test, n_feat)
support: tf.Tensor
Of shape (n_support, n_feat)
Returns
-------
tf.Tensor:
Of shape (n_test, n_support)
"""
rnorm_test = tf.rsqrt(
tf.reduce_sum(tf.square(test), 1, keep_dims=True)) + 1e-7
rnorm_support = tf.rsqrt(
tf.reduce_sum(tf.square(support), 1, keep_dims=True)) + 1e-7
test_normalized = test * rnorm_test
support_normalized = support * rnorm_support
# Transpose for mul
support_normalized_t = tf.transpose(support_normalized, perm=[1, 0])
g = tf.matmul(test_normalized, support_normalized_t) # Gram matrix
return g
def elu(x, alpha=1.):
"""Exponential linear unit.
Parameters
----------
x: A tensor or variable to compute the activation function for.
alpha: A scalar, slope of positive section.
Returns
-------
A tensor.
"""
res = tf.nn.elu(x)
if alpha == 1:
return res
else:
return tf.where(x > 0, res, alpha * res)
def relu(x, alpha=0., max_value=None):
"""Rectified linear unit.
With default values, it returns element-wise `max(x, 0)`.
Parameters
----------
x: A tensor or variable.
alpha: A scalar, slope of negative section (default=`0.`).
max_value: Saturation threshold.
Returns
-------
A tensor.
"""
if alpha != 0.:
negative_part = tf.nn.relu(-x)
x = tf.nn.relu(x)
if max_value is not None:
max_value = _to_tensor(max_value, x.dtype.base_dtype)
zero = _to_tensor(0., x.dtype.base_dtype)
x = tf.clip_by_value(x, zero, max_value)
if alpha != 0.:
alpha = _to_tensor(alpha, x.dtype.base_dtype)
x -= alpha * negative_part
return x
def hard_sigmoid(x):
"""Segment-wise linear approximation of sigmoid.
Faster than sigmoid.
Returns 0. if x < -2.5, 1. if x > 2.5.
In -2.5 <= x <= 2.5, returns 0.2 * x + 0.5.
Parameters
----------
x: A tensor or variable.
Returns
-------
A tensor.
"""
x = (0.2 * x) + 0.5
zero = _to_tensor(0., x.dtype.base_dtype)
one = _to_tensor(1., x.dtype.base_dtype)
x = tf.clip_by_value(x, zero, one)
return x
def sqrt(x):
"""Element-wise square root.
Parameters
----------
x: input tensor.
Returns
-------
A tensor.
"""
zero = _to_tensor(0., x.dtype.base_dtype)
inf = _to_tensor(np.inf, x.dtype.base_dtype)
x = tf.clip_by_value(x, zero, inf)
return tf.sqrt(x)
def var(x, axis=None, keepdims=False):
"""Variance of a tensor, alongside the specified axis.
Parameters
----------
x: A tensor or variable.
axis: An integer, the axis to compute the variance.
keepdims: A boolean, whether to keep the dimensions or not.
If keepdims is False, the rank of the tensor is reduced
by 1. If keepdims is True,
the reduced dimension is retained with length 1.
Returns
-------
A tensor with the variance of elements of `x`.
"""
axis = _normalize_axis(axis, get_ndim(x))
if x.dtype.base_dtype == tf.bool:
x = tf.cast(x, tf.float32)
m = tf.reduce_mean(x, axis=axis, keep_dims=True)
devs_squared = tf.square(x - m)
return tf.reduce_mean(devs_squared, axis=axis, keep_dims=keepdims)
def euclidean_distance(test, support, max_dist_sq=20):
"""Computes pairwise euclidean distances between provided tensors
TODO(rbharath): BROKEN! THIS DOESN'T WORK!
Parameters
----------
test: tf.Tensor
Of shape (n_test, n_feat)
support: tf.Tensor
Of shape (n_support, n_feat)
max_dist_sq: float, optional
Maximum pairwise distance allowed.
Returns
-------
tf.Tensor:
Of shape (n_test, n_support)
"""
test = tf.expand_dims(test, 1)
support = tf.expand_dims(support, 0)
g = -tf.maximum(tf.reduce_sum(tf.square(test - support), 2), max_dist_sq)
return g
def add_bias(tensor, init=None, name=None):
"""Add a bias term to a tensor.
Parameters
----------
tensor: tf.Tensor
Variable tensor.
init: float
Bias initializer. Defaults to zero.
name: str
Name for this op. Defaults to tensor.op.name.
Returns
-------
tf.Tensor
A biased tensor with the same shape as the input tensor.
"""
if init is None:
init = tf.zeros([tensor.get_shape()[-1].value])
with tf.name_scope(name, tensor.op.name, [tensor]):
b = tf.Variable(init, name='b')
return tf.nn.bias_add(tensor, b)
def dropout(tensor, dropout_prob, training=True, training_only=True):
"""Random dropout.
This implementation supports "always-on" dropout (training_only=False), which
can be used to calculate model uncertainty. See Gal and Ghahramani,
http://arxiv.org/abs/1506.02142.
NOTE(user): To simplify the implementation, I have chosen not to reverse
the scaling that occurs in tf.nn.dropout when using dropout during
inference. This shouldn't be an issue since the activations will be scaled
by the same constant in both training and inference. This means that there
are no training-time differences between networks that use dropout during
inference and those that do not.
Parameters
----------
tensor: tf.Tensor
Input tensor.
dropout_prob: float
Float giving dropout probability for weights (NOT keep probability).
training_only: bool
Boolean. If True (standard dropout), apply dropout only
during training. If False, apply dropout during inference as well.
Returns
-------
tf.Tensor:
A tensor with the same shape as the input tensor.
"""
if not dropout_prob:
return tensor # do nothing
keep_prob = 1.0 - dropout_prob
if training or not training_only:
tensor = tf.nn.dropout(tensor, keep_prob)
return tensor
def fully_connected_layer(tensor,
size=None,
weight_init=None,
bias_init=None,
name=None):
"""Fully connected layer.
Parameters
----------
tensor: tf.Tensor
Input tensor.
size: int
Number of output nodes for this layer.
weight_init: float
Weight initializer.
bias_init: float
Bias initializer.
name: str
Name for this op. Defaults to 'fully_connected'.
Returns
-------
tf.Tensor:
A new tensor representing the output of the fully connected layer.
Raises
------
ValueError
If input tensor is not 2D.
"""
if weight_init is None:
num_features = tensor.get_shape()[-1].value
weight_init = tf.truncated_normal([num_features, size], stddev=0.01)
if bias_init is None:
bias_init = tf.zeros([size])
with tf.name_scope(name, 'fully_connected', [tensor]):
w = tf.Variable(weight_init, name='w', dtype=tf.float32)
b = tf.Variable(bias_init, name='b', dtype=tf.float32)
return tf.nn.xw_plus_b(tensor, w, b)
def weight_decay(penalty_type, penalty):
"""Add weight decay.
Args:
model: TensorflowGraph.
Returns:
A scalar tensor containing the weight decay cost.
Raises:
NotImplementedError: If an unsupported penalty type is requested.
"""
variables = []
# exclude bias variables
for v in tf.trainable_variables():
if v.get_shape().ndims == 2:
variables.append(v)
with tf.name_scope('weight_decay'):
if penalty_type == 'l1':
cost = tf.add_n([tf.reduce_sum(tf.abs(v)) for v in variables])
elif penalty_type == 'l2':
cost = tf.add_n([tf.nn.l2_loss(v) for v in variables])
else:
raise NotImplementedError('Unsupported penalty_type %s' % penalty_type)
cost *= penalty
#tf.scalar_summary('Weight Decay Cost', cost)
return cost
def multitask_logits(features,
num_tasks,
num_classes=2,
weight_init=None,
bias_init=None,
dropout_prob=None,
name=None):
"""Create a logit tensor for each classification task.
Args:
features: A 2D tensor with dimensions batch_size x num_features.
num_tasks: Number of classification tasks.
num_classes: Number of classes for each task.
weight_init: Weight initializer.
bias_init: Bias initializer.
dropout_prob: Float giving dropout probability for weights (NOT keep
probability).
name: Name for this op. Defaults to 'multitask_logits'.
Returns:
A list of logit tensors; one for each classification task.
"""
logits_list = []
with tf.name_scope('multitask_logits'):
for task_idx in range(num_tasks):
with tf.name_scope(name,
('task' + str(task_idx).zfill(len(str(num_tasks)))),
[features]):
logits_list.append(
logits(
features,
num_classes,
weight_init=weight_init,
bias_init=bias_init,
dropout_prob=dropout_prob))
return logits_list
def logits(features,
num_classes=2,
weight_init=None,
bias_init=None,
dropout_prob=None,
name=None):
"""Create a logits tensor for a single classification task.
You almost certainly don't want dropout on there -- it's like randomly setting
the (unscaled) probability of a target class to 0.5.
Args:
features: A 2D tensor with dimensions batch_size x num_features.
num_classes: Number of classes for each task.
weight_init: Weight initializer.
bias_init: Bias initializer.
dropout_prob: Float giving dropout probability for weights (NOT keep
probability).
name: Name for this op.
Returns:
A logits tensor with shape batch_size x num_classes.
"""
with tf.name_scope(name, 'logits', [features]) as name:
return dropout(
fully_connected_layer(
features,
num_classes,
weight_init=weight_init,
bias_init=bias_init,
name=name), dropout_prob)
def softmax_N(tensor, name=None):
"""Apply softmax across last dimension of a tensor.
Args:
tensor: Input tensor.
name: Name for this op. If None, defaults to 'softmax_N'.
Returns:
A tensor with softmax-normalized values on the last dimension.
"""
with tf.name_scope(name, 'softmax_N', [tensor]):
exp_tensor = tf.exp(tensor)
reduction_indices = [tensor.get_shape().ndims - 1]
return tf.div(exp_tensor,
tf.reduce_sum(
exp_tensor, axis=reduction_indices, keep_dims=True))
def optimizer(optimizer="adam", learning_rate=.001, momentum=.9):
"""Create model optimizer.
Parameters
----------
optimizer: str, optional
Name of optimizer
learning_rate: float, optional
Learning rate for algorithm
momentum: float, optional
Momentum rate
Returns
-------
A training Optimizer.
Raises:
NotImplementedError: If an unsupported optimizer is requested.
"""
# TODO(user): gradient clipping (see Minimize)
if optimizer == 'adagrad':
train_op = tf.train.AdagradOptimizer(learning_rate)
elif optimizer == 'adam':
train_op = tf.train.AdamOptimizer(learning_rate)
elif optimizer == 'momentum':
train_op = tf.train.MomentumOptimizer(learning_rate, momentum)
elif optimizer == 'rmsprop':
train_op = tf.train.RMSPropOptimizer(learning_rate, momentum)
elif optimizer == 'sgd':
train_op = tf.train.GradientDescentOptimizer(learning_rate)
else:
raise NotImplementedError('Unsupported optimizer %s' % optimizer)
return train_op
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"tensorflow.cond",
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"tensorflow.matmul",
"tensorflow.nn.elu",
"tensorflow.nn.batch_normalization",
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"tensorflow.reduce_mean",
"tensorflow.reshape",
"tensorflow.expand_dims",
"tensorflow.constant_initializer",
"tensorflow.log",
"tensorflow.sqrt",
"tensorflow.abs"
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YuHe0108/cvmodule | ea00a90fc9bbca5b2c7809791cbd1f7b0da526cd | from tensorflow import keras
import tensorflow as tf
def joint_mse_loss(y_pred, y_true, true_weight):
"""
损失函数想要表达的意思: 输出的特征图数量为关键点的数量，意味着输出的是每一个像素属于各个关键点的置信度
"""
batch_size = y_pred.shape[0]
num_of_joints = y_pred.shape[-1] # 有多少个关键点
y_pred = tf.reshape(y_pred, shape=(batch_size, -1, num_of_joints)) # 合并宽和高
heatmap_pred_list = tf.split(value=y_pred,
num_or_size_splits=num_of_joints,
axis=-1) # 拆分每一个关键点的特征图 [batch_size, -1, 1]
y_true = tf.reshape(y_true, shape=(batch_size, -1, num_of_joints))
heatmap_true_list = tf.split(value=y_true, # y_true执行与y_pred相同的操作
num_or_size_splits=num_of_joints,
axis=-1)
losses = [] # 计算每一个关键点的损失值，并累加求平均
for i in range(num_of_joints):
heatmap_pred = tf.squeeze(heatmap_pred_list[i])
heatmap_true = tf.squeeze(heatmap_true_list[i])
loss = 0.5 * tf.losses.mean_squared_error(y_pred=heatmap_pred * true_weight[:, i],
y_true=heatmap_true * true_weight[:, i])
losses.append(loss)
return tf.reduce_mean(loss)
class JointsMSELoss(object):
def __init__(self):
self.mse = tf.losses.MeanSquaredError()
def __call__(self, y_pred, target, target_weight):
batch_size = y_pred.shape[0]
num_of_joints = y_pred.shape[-1]
pred = tf.reshape(tensor=y_pred, shape=(batch_size, -1, num_of_joints))
heatmap_pred_list = tf.split(value=pred, num_or_size_splits=num_of_joints, axis=-1)
gt = tf.reshape(tensor=target, shape=(batch_size, -1, num_of_joints))
heatmap_gt_list = tf.split(value=gt, num_or_size_splits=num_of_joints, axis=-1)
loss = 0.0
for i in range(num_of_joints):
heatmap_pred = tf.squeeze(heatmap_pred_list[i])
heatmap_gt = tf.squeeze(heatmap_gt_list[i])
loss += 0.5 * self.mse(y_true=heatmap_pred * target_weight[:, i],
y_pred=heatmap_gt * target_weight[:, i])
return loss / num_of_joints
| [
"tensorflow.losses.mean_squared_error",
"tensorflow.reduce_mean",
"tensorflow.reshape",
"tensorflow.losses.MeanSquaredError",
"tensorflow.squeeze",
"tensorflow.split"
] | HumeanPoseEstimate/loss.py | [(11, 'tensorflow.reshape', 'tf.reshape', (['y_pred'], {'shape': '(batch_size, -1, num_of_joints)'}), True, 'import tensorflow as tf\n'), (12, 'tensorflow.split', 'tf.split', ([], {'value': 'y_pred', 'num_or_size_splits': 'num_of_joints', 'axis': '(-1)'}), True, 'import tensorflow as tf\n'), (15, 'tensorflow.reshape', 'tf.reshape', (['y_true'], {'shape': '(batch_size, -1, num_of_joints)'}), True, 'import tensorflow as tf\n'), (16, 'tensorflow.split', 'tf.split', ([], {'value': 'y_true', 'num_or_size_splits': 'num_of_joints', 'axis': '(-1)'}), True, 'import tensorflow as tf\n'), (26, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['loss'], {}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.squeeze', 'tf.squeeze', (['heatmap_pred_list[i]'], {}), True, 'import tensorflow as tf\n'), (22, 'tensorflow.squeeze', 'tf.squeeze', (['heatmap_true_list[i]'], {}), True, 'import tensorflow as tf\n'), (31, 'tensorflow.losses.MeanSquaredError', 'tf.losses.MeanSquaredError', ([], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.reshape', 'tf.reshape', ([], {'tensor': 'y_pred', 'shape': '(batch_size, -1, num_of_joints)'}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.split', 'tf.split', ([], {'value': 'pred', 'num_or_size_splits': 'num_of_joints', 'axis': '(-1)'}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.reshape', 'tf.reshape', ([], {'tensor': 'target', 'shape': '(batch_size, -1, num_of_joints)'}), True, 'import tensorflow as tf\n'), (39, 'tensorflow.split', 'tf.split', ([], {'value': 'gt', 'num_or_size_splits': 'num_of_joints', 'axis': '(-1)'}), True, 'import tensorflow as tf\n'), (23, 'tensorflow.losses.mean_squared_error', 'tf.losses.mean_squared_error', ([], {'y_pred': '(heatmap_pred * true_weight[:, (i)])', 'y_true': '(heatmap_true * true_weight[:, (i)])'}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.squeeze', 'tf.squeeze', (['heatmap_pred_list[i]'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.squeeze', 'tf.squeeze', (['heatmap_gt_list[i]'], {}), True, 'import tensorflow as tf\n')] |
danielvarga/vat_tf | 0b40b256922b7996558504a5d2c3556b5f9fff15 | import time
import numpy as np
import tensorflow as tf
import layers as L
import vat
FLAGS = tf.app.flags.FLAGS
tf.app.flags.DEFINE_string('device', '/gpu:0', "device")
tf.app.flags.DEFINE_string('dataset', 'cifar10', "{cifar10, svhn}")
tf.app.flags.DEFINE_string('log_dir', "", "log_dir")
tf.app.flags.DEFINE_integer('seed', 1, "initial random seed")
tf.app.flags.DEFINE_bool('validation', False, "")
tf.app.flags.DEFINE_integer('batch_size', 32, "the number of examples in a batch")
tf.app.flags.DEFINE_integer('ul_batch_size', 128, "the number of unlabeled examples in a batch")
tf.app.flags.DEFINE_integer('eval_batch_size', 100, "the number of eval examples in a batch")
tf.app.flags.DEFINE_integer('eval_freq', 5, "")
tf.app.flags.DEFINE_integer('num_epochs', 120, "the number of epochs for training")
tf.app.flags.DEFINE_integer('epoch_decay_start', 80, "epoch of starting learning rate decay")
tf.app.flags.DEFINE_integer('num_iter_per_epoch', 400, "the number of updates per epoch")
tf.app.flags.DEFINE_float('learning_rate', 0.001, "initial leanring rate")
tf.app.flags.DEFINE_float('mom1', 0.9, "initial momentum rate")
tf.app.flags.DEFINE_float('mom2', 0.5, "momentum rate after epoch_decay_start")
tf.app.flags.DEFINE_string('method', 'vat', "{vat, vatent, baseline}")
if FLAGS.dataset == 'cifar10':
from cifar10 import inputs, unlabeled_inputs
elif FLAGS.dataset == 'svhn':
from svhn import inputs, unlabeled_inputs
else:
raise NotImplementedError
NUM_EVAL_EXAMPLES = 5000
def build_training_graph(x, y, ul_x, ul_u, lr, mom):
global_step = tf.get_variable(
name="global_step",
shape=[],
dtype=tf.float32,
initializer=tf.constant_initializer(0.0),
trainable=False,
)
logit = vat.forward(x)
nll_loss = L.ce_loss(logit, y)
with tf.variable_scope(tf.get_variable_scope(), reuse=True):
if FLAGS.method == 'vat':
ul_logit = vat.forward(ul_x, is_training=True, update_batch_stats=False)
vat_loss, ul_u_updated = vat.virtual_adversarial_loss(ul_x, ul_u, ul_logit)
additional_loss = vat_loss
elif FLAGS.method == 'vatent':
ul_logit = vat.forward(ul_x, is_training=True, update_batch_stats=False)
vat_loss, ul_u_updated = vat.virtual_adversarial_loss(ul_x, ul_u, ul_logit)
ent_loss = L.entropy_y_x(ul_logit)
additional_loss = vat_loss + ent_loss
elif FLAGS.method == 'baseline':
additional_loss = 0
else:
raise NotImplementedError
loss = nll_loss + additional_loss
opt = tf.train.AdamOptimizer(learning_rate=lr, beta1=mom)
tvars = tf.trainable_variables()
grads_and_vars = opt.compute_gradients(loss, tvars)
train_op = opt.apply_gradients(grads_and_vars, global_step=global_step)
return loss, train_op, global_step, ul_u_updated
def build_eval_graph(x, y, ul_x, ul_u):
losses = {}
logit = vat.forward(x, is_training=False, update_batch_stats=False)
nll_loss = L.ce_loss(logit, y)
losses['NLL'] = nll_loss
acc = L.accuracy(logit, y)
losses['Acc'] = acc
scope = tf.get_variable_scope()
scope.reuse_variables()
# at_loss = vat.adversarial_loss(x, y, nll_loss, is_training=False)
# losses['AT_loss'] = at_loss
ul_logit = vat.forward(ul_x, is_training=False, update_batch_stats=False)
vat_loss = vat.virtual_adversarial_loss(ul_x, ul_u, ul_logit, is_training=False)
losses['VAT_loss'] = vat_loss
return losses
def main(_):
print(FLAGS.epsilon, FLAGS.top_bn)
np.random.seed(seed=FLAGS.seed)
tf.set_random_seed(np.random.randint(1234))
with tf.Graph().as_default() as g:
with tf.device("/cpu:0"):
images, labels = inputs(batch_size=FLAGS.batch_size,
train=True,
validation=FLAGS.validation,
shuffle=True)
ul_images = tf.placeholder(shape=images.shape, dtype=tf.float32)
'''unlabeled_inputs(batch_size=FLAGS.ul_batch_size,
validation=FLAGS.validation,
shuffle=True)'''
images_eval_train, labels_eval_train = inputs(batch_size=FLAGS.eval_batch_size,
train=True,
validation=FLAGS.validation,
shuffle=True)
ul_images_eval_train = unlabeled_inputs(batch_size=FLAGS.eval_batch_size,
validation=FLAGS.validation,
shuffle=True)
images_eval_test, labels_eval_test = inputs(batch_size=FLAGS.eval_batch_size,
train=False,
validation=FLAGS.validation,
shuffle=True)
def placeholder_like(x, name=None):
return tf.placeholder(shape=x.shape, dtype=tf.float32, name=name)
def random_sphere(shape):
n = tf.random_normal(shape=shape, dtype=tf.float32)
n = tf.reshape(n, shape=(int(shape[0]), -1))
n = tf.nn.l2_normalize(n, dim=1)
n = tf.reshape(n, shape)
return n
def random_sphere_numpy(shape):
n = np.random.normal(size=shape)
proj_shape = tuple([n.shape[0]] + [1 for _ in range(len(shape) - 1)])
return n / np.linalg.norm(n.reshape((n.shape[0], -1)), axis=1).reshape(proj_shape)
print(ul_images.shape)
# ul_u = random_sphere(ul_images.shape)
# ul_u_eval_train = random_sphere(ul_images_eval_train.shape)
# ul_u_eval_test = random_sphere(images_eval_test.shape)
ul_u = placeholder_like(ul_images, "ul_u")
ul_u_eval_train = placeholder_like(ul_images_eval_train, "ul_u_eval_train")
ul_u_eval_test = placeholder_like(images_eval_test, "ul_u_eval_test")
with tf.device(FLAGS.device):
lr = tf.placeholder(tf.float32, shape=[], name="learning_rate")
mom = tf.placeholder(tf.float32, shape=[], name="momentum")
with tf.variable_scope("CNN") as scope:
# Build training graph
loss, train_op, global_step, ul_u_updated = build_training_graph(
images, labels, ul_images, ul_u, lr, mom)
scope.reuse_variables()
# Build eval graph
losses_eval_train = build_eval_graph(images_eval_train, labels_eval_train, ul_images_eval_train, ul_u_eval_train)
losses_eval_test = build_eval_graph(images_eval_test, labels_eval_test, images_eval_test, ul_u_eval_test)
init_op = tf.global_variables_initializer()
if not FLAGS.log_dir:
logdir = None
writer_train = None
writer_test = None
else:
logdir = FLAGS.log_dir
writer_train = tf.summary.FileWriter(FLAGS.log_dir + "/train", g)
writer_test = tf.summary.FileWriter(FLAGS.log_dir + "/test", g)
saver = tf.train.Saver(tf.global_variables())
sv = tf.train.Supervisor(
is_chief=True,
logdir=logdir,
init_op=init_op,
init_feed_dict={lr: FLAGS.learning_rate, mom: FLAGS.mom1},
saver=saver,
global_step=global_step,
summary_op=None,
summary_writer=None,
save_model_secs=150, recovery_wait_secs=0)
ul_images_np = np.load("train_images.npy").reshape((-1, 32, 32, 3))
print("TRUNCATING UL DATA")
ul_images_np = ul_images_np[:FLAGS.batch_size]
ul_u_np = random_sphere_numpy(ul_images_np.shape)
print(ul_images_np.shape, ul_u_np.shape)
print("Training...")
with sv.managed_session() as sess:
for ep in range(FLAGS.num_epochs):
if sv.should_stop():
break
if ep < FLAGS.epoch_decay_start:
feed_dict = {lr: FLAGS.learning_rate, mom: FLAGS.mom1}
else:
decayed_lr = ((FLAGS.num_epochs - ep) / float(
FLAGS.num_epochs - FLAGS.epoch_decay_start)) * FLAGS.learning_rate
feed_dict = {lr: decayed_lr, mom: FLAGS.mom2}
sum_loss = 0
start = time.time()
for i in range(FLAGS.num_iter_per_epoch):
picked = range(FLAGS.batch_size) # np.random.choice(len(ul_images_np), size=FLAGS.batch_size, replace=False)
feed_dict[ul_images] = ul_images_np[picked]
feed_dict[ul_u] = ul_u_np[picked]
ul_u_updated_np, _, batch_loss, _ = sess.run([ul_u_updated, train_op, loss, global_step],
feed_dict=feed_dict)
delta = ul_u_updated_np - ul_u_np[picked]
# print("pos", ul_u_updated_np.reshape((FLAGS.batch_size, -1))[0, :4])
# print("delta", np.linalg.norm(delta.reshape((FLAGS.batch_size, -1)), axis=1)[:4])
print(np.linalg.norm(ul_u_updated_np - ul_u_np[picked]), ul_u_updated_np.reshape((FLAGS.batch_size, -1))[0, :3])
ul_u_np[picked] = ul_u_updated_np
sum_loss += batch_loss
end = time.time()
print("Epoch:", ep, "CE_loss_train:", sum_loss / FLAGS.num_iter_per_epoch, "elapsed_time:", end - start)
if (ep + 1) % FLAGS.eval_freq == 0 or ep + 1 == FLAGS.num_epochs:
# Eval on training data
act_values_dict = {}
feed_dict = {ul_u_eval_train: random_sphere_numpy(ul_u_eval_train.shape)}
for key, _ in losses_eval_train.iteritems():
act_values_dict[key] = 0
n_iter_per_epoch = NUM_EVAL_EXAMPLES / FLAGS.eval_batch_size
for i in range(n_iter_per_epoch):
values = losses_eval_train.values()
act_values = sess.run(values, feed_dict=feed_dict)
for key, value in zip(act_values_dict.keys(), act_values):
act_values_dict[key] += value
summary = tf.Summary()
current_global_step = sess.run(global_step)
for key, value in act_values_dict.iteritems():
print("train-" + key, value / n_iter_per_epoch)
summary.value.add(tag=key, simple_value=value / n_iter_per_epoch)
if writer_train is not None:
writer_train.add_summary(summary, current_global_step)
# Eval on test data
act_values_dict = {}
print("HOW COME THIS DOES NOT DEPEND ON ul_images_eval_train? SOMETHING'S WRONG HERE.")
feed_dict = {ul_u_eval_test: random_sphere_numpy(ul_u_eval_test.shape)}
for key, _ in losses_eval_test.iteritems():
act_values_dict[key] = 0
n_iter_per_epoch = NUM_EVAL_EXAMPLES / FLAGS.eval_batch_size
for i in range(n_iter_per_epoch):
values = losses_eval_test.values()
act_values = sess.run(values, feed_dict=feed_dict)
for key, value in zip(act_values_dict.keys(), act_values):
act_values_dict[key] += value
summary = tf.Summary()
current_global_step = sess.run(global_step)
for key, value in act_values_dict.iteritems():
print("test-" + key, value / n_iter_per_epoch)
summary.value.add(tag=key, simple_value=value / n_iter_per_epoch)
if writer_test is not None:
writer_test.add_summary(summary, current_global_step)
saver.save(sess, sv.save_path, global_step=global_step)
sv.stop()
if __name__ == "__main__":
tf.app.run()
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"tensorflow.train.Supervisor",
"tensorflow.app.flags.DEFINE_float",
"tensorflow.variable_scope",
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"tensorflow.random_normal"
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yijunyu/demo-fast | 11c0c84081a3181494b9c469bda42a313c457ad2 | # Copyright 2015 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# =============================================================================
"""Python front-end supports for functions.
NOTE: functions are currently experimental and subject to change!
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import hashlib
import inspect
import re
from tensorflow.core.framework import attr_value_pb2
from tensorflow.core.framework import function_pb2
from tensorflow.core.framework import op_def_pb2
from tensorflow.python.framework import dtypes
from tensorflow.python.framework import op_def_registry
from tensorflow.python.framework import ops
from tensorflow.python.ops import array_ops
from tensorflow.python.ops import variable_scope as vs
from tensorflow.python.util import compat
def _make_argname_from_tensor_name(name):
return re.sub(":0$", "", name).replace(":", "_o")
def _tensor_to_argdef(t, name=None, used_names=None):
"""Convert tensor t to an argdef, with a specified name or a unique name."""
arg = op_def_pb2.OpDef.ArgDef()
if name is None:
arg.name = _make_argname_from_tensor_name(t.name)
if used_names is not None:
if arg.name in used_names:
i = 0
while True:
new_name = "%s_U%d" % (arg.name, i)
if new_name not in used_names:
arg.name = new_name
break
i += 1
used_names.add(arg.name)
else:
arg.name = name
arg.type = t.dtype.as_datatype_enum
return arg
def _get_node_def(op):
return op._node_def # pylint: disable=protected-access
def _get_op_def(op):
# pylint: disable=protected-access
if hasattr(op, "_sig"):
return getattr(op, "_sig")
else:
return op_def_registry.get_registered_ops()[op.type]
# pylint: enable=protected-access
def _is_in_placeholders(op, func_arg_placeholders):
return op.values() and (op.values()[0].name in func_arg_placeholders)
def _create_input_dict(function_graph, func_arg_placeholders):
"""Create a mapping from graph tensor names to function tensor names."""
input_dict = {}
for op in function_graph.get_operations():
if _is_in_placeholders(op, func_arg_placeholders):
input_dict[op.values()[0].name] = op.values()[0].name
input_dict[op.name] = op.name
else:
op_def = _get_op_def(op)
attrs = _get_node_def(op).attr
o = 0
for arg_def in op_def.output_arg:
if arg_def.number_attr:
num = attrs[arg_def.number_attr].i
elif arg_def.type_list_attr:
num = len(attrs[arg_def.type_list_attr].list.type)
else:
num = 1
for i in range(num):
result = "%s:%s:%d" % (op.name, arg_def.name, i)
input_dict[op.values()[o].name] = result
if o == 0:
input_dict[op.name] = result
o += 1
return input_dict
def _add_op_node(op, func, input_dict):
"""Converts an op to a function def node and add it to `func`."""
# Add an entry in func.node_def
# Note that extend() makes a copy in this case, see:
# https://developers.google.com/protocol-buffers/docs/reference/python-generated#repeated-message-fields
func.node_def.extend([_get_node_def(op)])
node_def = func.node_def[-1]
for i in range(len(node_def.input)):
if not node_def.input[i].startswith("^"):
assert node_def.input[i] in input_dict, (
"%s missing from %s" % (node_def.input[i], input_dict.items()))
node_def.input[i] = input_dict[node_def.input[i]]
def _graph_to_function_def(graph, inputs, outputs, out_names=None):
"""Returns `graph` as a `FunctionDef` protocol buffer.
This method creates a [`FunctionDef`](
https://www.tensorflow.org/code/tensorflow/core/framework/function.proto)
protocol buffer that contains all the ops present in the graph. The
graph effectively becomes the body of the function.
The arguments `inputs` and `outputs` will be listed as the inputs
and outputs tensors of the function. They must be lists of
tensors present in the graph. The lists can optionally be empty.
Args:
graph: Graph.
inputs: List of tensors. Inputs to the function.
outputs: List of tensors. Outputs of the function.
out_names: Optional list of string names for the outputs.
Returns:
A FunctionDef protocol buffer.
Raises:
ValueError: if out_names is specified and the wrong length.
"""
func = function_pb2.FunctionDef()
func.signature.name = "_"
used_names = set()
func.signature.input_arg.extend([_tensor_to_argdef(i, used_names=used_names)
for i in inputs])
if out_names is None:
used_names = set()
func.signature.output_arg.extend([
_tensor_to_argdef(o, used_names=used_names) for o in outputs])
elif len(outputs) != len(out_names):
raise ValueError(
"Length of out_names (%d) does not match number of outputs (%d): %s" %
(len(out_names), len(outputs), ", ".join(out_names)))
elif len(out_names) != len(set(out_names)):
raise ValueError(
"Must not have duplicates in out_names: %s" % ", ".join(out_names))
else:
func.signature.output_arg.extend([
_tensor_to_argdef(o, name=n) for o, n in zip(outputs, out_names)])
func_arg_placeholders = set([i.name for i in inputs])
input_dict = _create_input_dict(graph, func_arg_placeholders)
for op in graph.get_operations():
if _is_in_placeholders(op, func_arg_placeholders):
continue
_add_op_node(op, func, input_dict)
if out_names is None:
for index, o in enumerate(outputs):
k = func.signature.output_arg[index].name
func.ret[k] = input_dict[o.name]
else:
for o, n in zip(outputs, out_names):
func.ret[n] = input_dict[o.name]
return func
def _parse_kwargs_as_attrs(**kwargs):
"""Parses **kwargs into a node's attributes."""
attrs = {}
noinline = kwargs.pop("noinline", None)
if noinline is not None:
attrs["_noinline"] = attr_value_pb2.AttrValue(b=bool(noinline))
compiled = kwargs.pop("compiled", None)
if compiled is not None:
attrs["_XlaCompile"] = attr_value_pb2.AttrValue(b=bool(compiled))
if kwargs:
raise ValueError("Unknown keyword arguments: %s" % kwargs.keys())
return attrs
def _call(sig, *inputs, **kwargs):
"""Adds a node calling a function.
This adds a `call` op to the default graph that calls the function
of signature `sig`, passing the tensors in `inputs` as arguments.
It returns the outputs of the call, which are one or more tensors.
`sig` is OpDefArg.a `_DefinedFunction` object.
You can pass an optional keyword parameter `name=string` to name the
added operation.
You can pass an optional keyword parameter `noinline=True|False` to
instruct the runtime not to inline the function body into the call
site.
Args:
sig: OpDefArg. The signature of the function.
*inputs: arguments to the function.
**kwargs: Optional keyword arguments. Can only contain 'name' or
'noinline'.
Returns:
A Tensor if the function returns a single value; a list of Tensors
if the functio returns multiple value; the Operation if the function
returns no values.
Raises:
ValueError: if the arguments are invalid.
"""
if len(inputs) != len(sig.input_arg):
raise ValueError("Expected number of arguments: %d, received: %d" %
(len(sig.input_arg), len(inputs)))
name = kwargs.pop("name", None)
attrs = _parse_kwargs_as_attrs(**kwargs)
g = ops.get_default_graph()
func_name = sig.name
output_types = [dtypes.DType(x.type) for x in sig.output_arg]
with ops.name_scope(name, func_name, inputs) as name:
op = g.create_op(
func_name,
list(inputs),
output_types,
name=name,
attrs=attrs,
compute_shapes=False)
setattr(op, "_sig", sig) # Remember the signature.
if op.outputs:
if len(op.outputs) == 1:
return op.outputs[0]
else:
return tuple(op.outputs)
else:
return op
def _get_func_name(func):
if callable(func):
if inspect.isfunction(func):
return func.__name__
elif inspect.ismethod(func):
return "%s.%s" % (func.__self__.__name__, func.__name__)
else: # Probably a class instance with __call__
return type(func)
else:
raise ValueError("Argument must be callable")
class _FuncGraph(ops.Graph):
"""A helper for construction a function.
_FuncGraph overrides ops.Graph's create_op() so that we can keep
track of every inputs into every op created inside the function. If
any input is from other graphs, we keep track of it in self.capture
and substitue the input with a place holder.
Each captured input's corresponding place holder is converted into a
function argument and the caller passes in the captured tensor.
"""
def __init__(self, *args, **kwargs):
super(_FuncGraph, self).__init__(*args, **kwargs)
self._building_function = True
self._outer_graph = ops.get_default_graph()
self._vscope = vs.get_variable_scope()
self._old_custom_getter = self._vscope.custom_getter
self._captured = {}
self.extra_inputs = []
self.extra_args = []
self.extra_vars = []
def getvar(self,
getter,
name,
shape=None,
dtype=None,
initializer=None,
trainable=True,
collections=None,
**kwargs):
"""A custom variable getter."""
# Here, we switch the default graph to the outer graph and ask the
# variable scope in which the function is defined to give us the
# variable. The variable is stashed in extra_vars and returned to
# the caller.
#
# We capture these variables so that the variable definition is
# hoisted upward to the outer most graph.
with self._outer_graph.as_default():
# pylint: disable=protected-access
var = self._vscope.get_variable(
vs._get_default_variable_store(),
name,
shape=shape,
dtype=dtype,
initializer=initializer,
trainable=trainable,
collections=collections)
self.extra_vars.append(var)
return var
def create_op(self, op_type, inputs, data_types, **kwargs):
for i, x in enumerate(inputs):
if x.graph is not self:
# Referring to a tensor from other graph.
if x in self._captured:
# Captured already.
inputs[i] = self._captured[x]
else:
# Substitute with a placeholder.
self.extra_inputs.append(x)
ph = array_ops.placeholder(x.dtype, shape=x.get_shape())
inputs[i] = ph
self._captured[x] = ph
self.extra_args.append(ph)
return super(_FuncGraph, self).create_op(op_type, inputs, data_types,
**kwargs)
def get_extra_vars():
"""Returns the captured variables by the function.
Returns:
If the default graph is being used to define a function, the
returned list of variables are those created inside the function
body so far. Otherwise, returns an empty list.
"""
g = ops.get_default_graph()
if isinstance(g, _FuncGraph):
return g.extra_vars
else:
return []
def get_extra_inputs():
"""Returns the captured input tensors by the function.
Returns:
If the default graph is being used to define a function, the
returned list of tensors are those accessed inside the function body
but defined outside the function body so far. Otherwise, returns an
empty list.
"""
g = ops.get_default_graph()
if isinstance(g, _FuncGraph):
return g.extra_inputs
else:
return []
def get_extra_args():
"""Returns the corresponding function arguments for the captured inputs.
Returns:
If the default graph is being used to define a function, the
returned list of place holders are those used inside the function
body corresponding those returned by get_extra_inputs(). Otherwise,
returns an empty list.
"""
g = ops.get_default_graph()
if isinstance(g, _FuncGraph):
return g.extra_args
else:
return []
class _DefinedFunction(object):
"""_DefinedFunction encapsulates a function definition and its properties.
Attributes:
name: The function name.
definition: The definition of this function. A FunctionDef proto.
grad_func_name: If not None, the name of this function's gradient function.
python_grad_func: A python callable implementing the gradient of
the function python-side.
"""
def __init__(self,
func,
argnames,
input_types,
func_name=None,
grad_func=None,
python_grad_func=None,
out_names=None,
**kwargs):
"""Creates _DefinedFunction.
Args:
func: A python callable which constructs a tf function body.
argnames: A list of strings for function argument names.
input_types: The function's argument types. Can be a tuple, list of
tf data types.
func_name: The function name. Defaults to None, in which derives from
'func'.
grad_func: This function's gradient function, if not None. Defaults
to None.
python_grad_func: A python callable implementing the gradient of
the function python-side.
out_names: An optional list of strings for the function return value
names.
**kwargs: The keyword arguments. **kwargs is passed to every call
site of this function.
Raises:
ValueError: The function definition is invalid.
"""
self._func = func
self._input_types = input_types
self._func_name = func_name
self._grad_func = grad_func
self._python_grad_func = python_grad_func
self._out_names = out_names
self._extra_kwargs = kwargs
self._definition = None # Constructed lazily.
self._args = []
assert isinstance(input_types, (list, tuple))
for i in range(len(input_types)):
argname = argnames[i] if i < len(argnames) else ("arg%d" % i)
argtype = input_types[i]
self._args.append((argname, argtype))
@property
def name(self):
"""Function name."""
self._create_definition_if_needed()
return self._func_name
@property
def definition(self):
"""Function definition proto."""
self._create_definition_if_needed()
return self._definition
def set_grad_func(self, grad_func):
"""Specifies the gradient function of this function."""
assert not self._grad_func
assert isinstance(grad_func, _DefinedFunction)
self._grad_func = grad_func
@property
def grad_func_name(self):
"""Its gradient function's name."""
return self._grad_func.name if self._grad_func else None
@property
def python_grad_func(self):
"""Python gradient function callable."""
return self._python_grad_func
@property
def declared_input_types(self):
"""Returns the list of data types of explicit declared inputs."""
return self._input_types
@property
def captured_inputs(self):
"""Returns the list of implicitly captured inputs."""
return self._extra_inputs
def _create_definition_if_needed(self):
"""Creates the function definition if it's not created yet."""
if self._definition is not None:
return
# Create the func_def object.
temp_graph = _FuncGraph()
with temp_graph.as_default():
# List of placeholders for the function_def.
inputs = []
for (argname, argtype) in self._args:
argholder = array_ops.placeholder(argtype, name=argname)
inputs.append(argholder)
# Call func and gather the output tensors.
with vs.variable_scope("", custom_getter=temp_graph.getvar):
outputs = self._func(*inputs)
# If func only returned one value, make it a tuple.
if not isinstance(outputs, (list, tuple)):
outputs = (outputs,)
if any([_ is None for _ in outputs]):
raise ValueError("Function can not return None.")
# Ensures each output is a Tensor.
outputs = [ops.convert_to_tensor(_) for _ in outputs]
self._extra_inputs = temp_graph.extra_inputs
inputs.extend(temp_graph.extra_args)
# Build the FunctionDef
self._definition = _graph_to_function_def(
temp_graph, inputs, outputs, out_names=self._out_names)
# Extra kwargs are treated as attrs on the function def.
kwargs_attr = _parse_kwargs_as_attrs(**self._extra_kwargs)
for k in kwargs_attr:
self._definition.attr[k].CopyFrom(kwargs_attr[k])
# Hash the definition and its dependencies.
hasher = hashlib.sha1()
def _hash_func_def():
"""Hash the function definition agnostic to node/map ordering."""
def update_num(n):
hasher.update(compat.as_bytes("%x" % n))
def update_str(s):
update_num(len(s))
hasher.update(compat.as_bytes(s))
def update_strs(slist):
update_num(len(slist))
for s in slist:
update_str(s)
for adef in self._definition.signature.input_arg:
update_str(adef.SerializeToString())
for adef in self._definition.signature.output_arg:
update_str(adef.SerializeToString())
for n in sorted(self._definition.node_def, key=lambda n: n.name):
update_str(n.name)
update_str(n.op)
update_strs(n.input)
update_num(len(n.attr))
# NOTE: protobuf map serialization does not guarantee ordering.
for k in sorted(n.attr):
update_str(k)
update_str(n.attr[k].SerializeToString())
_hash_func_def()
# pylint: disable=protected-access
self._sub_functions = temp_graph._functions
for subname in sorted(self._sub_functions.keys()):
hasher.update(compat.as_bytes(self._sub_functions[subname]._hash_str))
# pylint: enable=protected-access
# Uses the first 8 bytes sha1 hash digest as the __hash__.
self._hash_str = hasher.hexdigest()[:8]
self._hash = int(self._hash_str, 16)
# Finally, we decide the function name to use. If not specified,
# make up something which is almost certainly unique.
if not self._func_name:
self._func_name = "_".join([_get_func_name(self._func), self._hash_str])
self._definition.signature.name = self._func_name
if self._func.__doc__:
self._definition.signature.description = self._func.__doc__
def __hash__(self):
self._create_definition_if_needed()
return self._hash
def add_to_graph(self, g):
"""Adds this function into the graph g."""
self._create_definition_if_needed()
# pylint: disable=protected-access
# If 'g' has an identical function already, do nothing.
prev = g._get_function(self.name)
if prev and (prev._hash == self._hash):
return
# Adds this function into 'g'.
g._add_function(self)
# pylint: enable=protected-access
# Ensures related sub-routines are defined in 'g', too.
for f in self._sub_functions.values():
f.add_to_graph(g)
# Adds its gradient function, too.
if self._grad_func:
self._grad_func.add_to_graph(g)
def __call__(self, *args, **kwargs):
self.add_to_graph(ops.get_default_graph())
args = [ops.convert_to_tensor(_) for _ in args] + self._extra_inputs
return _call(self._definition.signature, *args, **kwargs)
# NOTE: The list needs to be extended when more data types are added.
_DTYPE_TO_STR = {
dtypes.float16: "f16",
dtypes.float32: "f32",
dtypes.float64: "f64",
dtypes.int32: "i32",
dtypes.uint8: "i8",
dtypes.uint16: "u16",
dtypes.int16: "i16",
dtypes.int8: "i8",
dtypes.string: "s",
dtypes.complex64: "c64",
dtypes.complex128: "c128",
dtypes.int64: "i64",
dtypes.bool: "b",
dtypes.qint8: "qi8",
dtypes.quint8: "qu8",
dtypes.qint16: "qi16",
dtypes.quint16: "qu16",
dtypes.qint32: "qi32",
dtypes.bfloat16: "b16"
}
def _type_list_to_str(types):
if any([_ not in _DTYPE_TO_STR for _ in types]):
raise ValueError("Unsupported dtypes: %s" % types)
return "".join([_DTYPE_TO_STR[_] for _ in types])
class _OverloadedFunction(object):
"""_OverloadedFunction encapsulates an overloaded function.
_OverloadedFunction maintains a mapping from input types to
instantiated _DefinedFunction in self._overload.
"""
def __init__(self,
func,
argnames,
func_name=None,
grad_func=None,
python_grad_func=None,
out_names=None,
**kwargs):
"""Creates _DefinedFunction.
Args:
func: A python callable which constructs a tf function body.
argnames: A list of strings for function argument names.
func_name: The function name. Defaults to None, in which derives from
'func'.
grad_func: This function's gradient function, if not None. Defaults
to None.
python_grad_func: A python callable implementing the gradient of
the function python-side.
out_names: A list of strings for the function return value names.
**kwargs: The keyword arguments. **kwargs is passed to every call
site of this function.
Raises:
ValueError: The function definition is invalid.
"""
self._func = func
self._argnames = argnames
self._func_name = func_name
assert grad_func is None or isinstance(grad_func, _OverloadedFunction)
self._grad_func = grad_func
self._python_grad_func = python_grad_func
self._out_names = out_names
self._extra_kwargs = kwargs
self._overload = {}
def instantiate(self, input_types):
"""Instantiate this function given input argument types.
Args:
input_types: A list of data types for the inputs.
Returns:
_DefinedFunction for the given input types.
"""
# Stringify the type list.
key = _type_list_to_str(input_types)
defined = self._overload.get(key)
if not defined:
# If not defined yet, define the function given the input types.
name = self._func_name
if name is not None:
name = "_".join([name, key])
defined = _DefinedFunction(self._func, self._argnames, input_types, name,
None, self._python_grad_func,
out_names=self._out_names,
**self._extra_kwargs)
_ = defined.name # Fully instantiate the function definition.
if self._grad_func:
# If _grad_func is given, it is another
# _OverloadedFunction. We need to instantiate it with the
# right input types.
output_types = [
dtypes.DType(_.type)
for _ in defined.definition.signature.output_arg
]
# pylint: disable=protected-access
defined._grad_func = self._grad_func.instantiate(input_types +
output_types)
# pylint: enable=protected-access
self._overload[key] = defined
return defined
def __call__(self, *args, **kwargs):
input_types = []
args = list(args)
for (i, x) in enumerate(args):
x = ops.convert_to_tensor(x)
if not isinstance(x, ops.Tensor):
raise ValueError("Expect a Tensor but get ", x)
input_types.append(x.dtype)
args[i] = x
return self.instantiate(input_types)(*args, **kwargs)
class Defun(object):
"""Decorator used to define TensorFlow functions.
Use this decorator to make a Python function usable directly as a TensorFlow
function.
The decorated function must add ops to the default graph and return zero or
more `Tensor` objects. Call the decorator with named arguments, one for each
argument of the function to decorate, with the expected type of the argument
as value.
For example if the function to decorate accepts two `tf.float32` arguments
named `x` and `y`, call the decorator with:
@Defun(tf.float32, tf.float32)
def foo(x, y):
...
When you call the decorated function it will add `call` ops to the
default graph and adds the definition of the function into the
default graph. Because the addition of the function into the graph
is deferred, the decorator can be used anywhere in the program.
Example, but also see the [How To on functions](link_needed).
```python
# Defining the function.
@tf.Defun(tf.float32, tf.float32)
def MyFunc(x, y):
return x + y, x - y
# Building the graph.
a = tf.Constant([1.0])
b = tf.Constant([2.0])
c, d = MyFunc(a, b, name='mycall')
```
"""
def __init__(self, *input_types, **kwargs):
"""Create a `Defun` decorator.
Args:
*input_types: A list of `tf.DType`
**kwargs: Optional keyword arguments, including
func_name - (optional). A python string, the name to use to
declare this `Function` in the graph.
grad_func - (optional). A function implementing the gradient
of the function-to-register. This is either a
`_DefinedFunction` or a `Declare` object. The gradient
function must satisify the criterion defined in
function.proto:GradientDef.
python_grad_func - (optional). A function implementing the
gradient of the function python-side. This function must
take the current op and the gradients w.r.t. its outputs,
and return the gradients w.r.t. the inputs. That is it must
implement the interface expected by `tf.RegisterGradient`).
This will be called by tf.gradients to add the gradient ops
to the graph. At most one of grad_func and python_grad_func
can be specified.
out_names = (optional). A list of strings, one per output
tensor.
"""
self._input_types = input_types
self._func_name = kwargs.pop("func_name", None)
self._grad_func = kwargs.pop("grad_func", None)
self._python_grad_func = kwargs.pop("python_grad_func", None)
self._out_names = kwargs.pop("out_names", None)
self._extra_kwargs = kwargs
def __call__(self, func):
# Various sanity checks on the callable func.
if not callable(func):
raise ValueError("func %s must be callable" % func)
# Func should not use kwargs and defaults.
argspec = inspect.getargspec(func)
if argspec.keywords or argspec.defaults:
raise ValueError("Functions with argument defaults or keyword "
"arguments are not supported.")
# Computes how many arguments 'func' has.
min_args = len(argspec.args)
max_args = min_args
if argspec.varargs:
max_args = 1000000
argnames = argspec.args
if inspect.ismethod(func):
# 1st argument is the "class" type.
min_args -= 1
argnames = argnames[1:]
if self._input_types:
# If Defun is given a list of types for the inputs, the number
# of input types should be compatible with 'func'.
num = len(self._input_types)
if num < min_args or num > max_args:
raise ValueError(
"The function has fewer arguments than the number of specified "
"input types.")
return _DefinedFunction(func, argnames, self._input_types,
self._func_name, self._grad_func,
self._python_grad_func,
out_names=self._out_names, **self._extra_kwargs)
# 'func' expects no arguments and input types is an empty list.
if min_args == 0 and max_args == 0:
return _DefinedFunction(func, [], [], self._func_name, self._grad_func,
self._python_grad_func,
out_names=self._out_names, **self._extra_kwargs)
# Input types are unknown. It's an overloaded function and hence
# its definition needs to be deferred until it's called.
return _OverloadedFunction(func, argnames, self._func_name, self._grad_func,
self._python_grad_func,
out_names=self._out_names, **self._extra_kwargs)
class Declare(object):
"""Declares a TensorFlow function.
The object represents a TensorFlow function which will be defined
later during a graph construction.
For example,
# Declares a function Foo, which takes a tf.int32 named "n" and a
# tf.float32 named "n" as inputs and returns a tf.float32 named "z"
# as its output.
foo = Declare("Foo", [("n", tf.int32), ("x", tf.float32)],
[("z", tf.float32)])
# Defines a function Bar calls Foo.
@tf.Defun(tf.float32)
def Bar(x):
return foo(6, x)
# Defines Foo, with output named "z".
@tf.Defun(tf.int32, tf.float32, out_names=["z"])
def Foo(n, x):
... # Calculation.
return result
"""
def __init__(self, func_name, inputs, outputs):
"""Creates a `Declare` object.
Args:
func_name: The name of the function.
inputs: A list of (name, data type) pairs of function arguments.
outputs: A list of (name, data type) pairs of function return values.
"""
self._sig = op_def_pb2.OpDef()
self._sig.name = func_name
def _to_argdef_list(args):
names = [n for n, t in args]
if len(names) != len(set(names)):
raise ValueError("Expected names to all be unique: %s" % str(names))
return [op_def_pb2.OpDef.ArgDef(type=t.as_datatype_enum, name=n)
for n, t in args]
self._sig.input_arg.extend(_to_argdef_list(inputs))
self._sig.output_arg.extend(_to_argdef_list(outputs))
def __call__(self, *inputs, **kwargs):
inputs = [ops.convert_to_tensor(_) for _ in inputs]
return _call(self._sig, *inputs, **kwargs)
| [
"tensorflow.core.framework.function_pb2.FunctionDef",
"tensorflow.core.framework.op_def_pb2.OpDef",
"tensorflow.python.ops.variable_scope.get_variable_scope",
"tensorflow.python.ops.variable_scope._get_default_variable_store",
"tensorflow.core.framework.op_def_pb2.OpDef.ArgDef",
"tensorflow.python.framework.op_def_registry.get_registered_ops",
"tensorflow.python.framework.ops.get_default_graph",
"tensorflow.python.framework.ops.name_scope",
"tensorflow.python.ops.array_ops.placeholder",
"tensorflow.python.util.compat.as_bytes",
"tensorflow.python.framework.dtypes.DType",
"tensorflow.python.framework.ops.convert_to_tensor",
"tensorflow.python.ops.variable_scope.variable_scope"
] | datasets/tensorflow-1.0.1/tensorflow/python/framework/function.py | [(45, 'tensorflow.core.framework.op_def_pb2.OpDef.ArgDef', 'op_def_pb2.OpDef.ArgDef', ([], {}), False, 'from tensorflow.core.framework import op_def_pb2\n'), (147, 'tensorflow.core.framework.function_pb2.FunctionDef', 'function_pb2.FunctionDef', ([], {}), False, 'from tensorflow.core.framework import function_pb2\n'), (237, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (349, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (365, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (381, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (239, 'tensorflow.python.framework.dtypes.DType', 'dtypes.DType', (['x.type'], {}), False, 'from tensorflow.python.framework import dtypes\n'), (240, 'tensorflow.python.framework.ops.name_scope', 'ops.name_scope', (['name', 'func_name', 'inputs'], {}), False, 'from tensorflow.python.framework import ops\n'), (260, 'inspect.isfunction', 'inspect.isfunction', (['func'], {}), False, 'import inspect\n'), (285, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (286, 'tensorflow.python.ops.variable_scope.get_variable_scope', 'vs.get_variable_scope', ([], {}), True, 'from tensorflow.python.ops import variable_scope as vs\n'), (521, 'hashlib.sha1', 'hashlib.sha1', ([], {}), False, 'import hashlib\n'), (807, 'inspect.getargspec', 'inspect.getargspec', (['func'], {}), False, 'import inspect\n'), (818, 'inspect.ismethod', 'inspect.ismethod', (['func'], {}), False, 'import inspect\n'), (882, 'tensorflow.core.framework.op_def_pb2.OpDef', 'op_def_pb2.OpDef', ([], {}), False, 'from tensorflow.core.framework import op_def_pb2\n'), (40, 're.sub', 're.sub', (['""":0$"""', '""""""', 'name'], {}), False, 'import re\n'), (73, 'tensorflow.python.framework.op_def_registry.get_registered_ops', 'op_def_registry.get_registered_ops', ([], {}), False, 'from tensorflow.python.framework import op_def_registry\n'), (262, 'inspect.ismethod', 'inspect.ismethod', (['func'], {}), False, 'import inspect\n'), (600, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (721, 'tensorflow.python.framework.ops.convert_to_tensor', 'ops.convert_to_tensor', (['x'], {}), False, 'from tensorflow.python.framework import ops\n'), (896, 'tensorflow.python.framework.ops.convert_to_tensor', 'ops.convert_to_tensor', (['_'], {}), False, 'from tensorflow.python.framework import ops\n'), (313, 'tensorflow.python.ops.variable_scope._get_default_variable_store', 'vs._get_default_variable_store', ([], {}), True, 'from tensorflow.python.ops import variable_scope as vs\n'), (496, 'tensorflow.python.ops.array_ops.placeholder', 'array_ops.placeholder', (['argtype'], {'name': 'argname'}), False, 'from tensorflow.python.ops import array_ops\n'), (499, 'tensorflow.python.ops.variable_scope.variable_scope', 'vs.variable_scope', (['""""""'], {'custom_getter': 'temp_graph.getvar'}), True, 'from tensorflow.python.ops import variable_scope as vs\n'), (507, 'tensorflow.python.framework.ops.convert_to_tensor', 'ops.convert_to_tensor', (['_'], {}), False, 'from tensorflow.python.framework import ops\n'), (558, 'tensorflow.python.util.compat.as_bytes', 'compat.as_bytes', (['self._sub_functions[subname]._hash_str'], {}), False, 'from tensorflow.python.util import compat\n'), (601, 'tensorflow.python.framework.ops.convert_to_tensor', 'ops.convert_to_tensor', (['_'], {}), False, 'from tensorflow.python.framework import ops\n'), (889, 'tensorflow.core.framework.op_def_pb2.OpDef.ArgDef', 'op_def_pb2.OpDef.ArgDef', ([], {'type': 't.as_datatype_enum', 'name': 'n'}), False, 'from tensorflow.core.framework import op_def_pb2\n'), (527, 'tensorflow.python.util.compat.as_bytes', 'compat.as_bytes', (["('%x' % n)"], {}), False, 'from tensorflow.python.util import compat\n'), (531, 'tensorflow.python.util.compat.as_bytes', 'compat.as_bytes', (['s'], {}), False, 'from tensorflow.python.util import compat\n'), (707, 'tensorflow.python.framework.dtypes.DType', 'dtypes.DType', (['_.type'], {}), False, 'from tensorflow.python.framework import dtypes\n')] |
priumoraes/tpu | c7fbe70f00956e802c23c9e831d7482613968fa7 | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
# pylint: disable=line-too-long
r"""TensorFlow AmoebaNet Example.
GCP Run Example
python amoeba_net.py --data_dir=gs://cloud-tpu-datasets/imagenet-data --model_dir=gs://cloud-tpu-ckpts/models/ameoba_net_x/ \
--drop_connect_keep_prob=1.0 --cell_name=evol_net_x --num_cells=12 --reduction_size=256 --image_size=299 --num_epochs=48 \
--train_batch_size=256 --num_epochs_per_eval=4.0 --lr_decay_value=0.89 --lr_num_epochs_per_decay=1 --alsologtostderr \
--tpu=huangyp-tpu-0
"""
# pylint: enable=line-too-long
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import io
import itertools
import math
import os
from absl import app
from absl import flags
import absl.logging as _logging # pylint: disable=unused-import
import numpy as np
from PIL import Image
import tensorflow as tf
import amoeba_net_model as model_lib
from tensorflow_serving.apis import predict_pb2
from tensorflow_serving.apis import prediction_log_pb2
# Cloud TPU Cluster Resolvers
flags.DEFINE_string(
'tpu', default=None,
help='The Cloud TPU to use for training. This should be either the name '
'used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 url.')
flags.DEFINE_string(
'gcp_project', default=None,
help='Project name for the Cloud TPU-enabled project. If not specified, we '
'will attempt to automatically detect the GCE project from metadata.')
flags.DEFINE_string(
'tpu_zone', default=None,
help='GCE zone where the Cloud TPU is located in. If not specified, we '
'will attempt to automatically detect the GCE project from metadata.')
# General Parameters
flags.DEFINE_integer(
'num_shards', 8,
'Number of shards (TPU cores).')
flags.DEFINE_integer(
'distributed_group_size', 1,
help='Size of the distributed batch norm. group.'
'Default is normalization over local examples only.'
'When set to a value greater than 1, it will enable'
'a distribtued batch norm. To enable a global batch norm.'
'set distributed_group_size to FLAGS.num_shards')
flags.DEFINE_bool(
'use_tpu', True,
'Use TPUs rather than CPU or GPU.')
flags.DEFINE_string(
'data_dir', '',
'Directory where input data is stored')
flags.DEFINE_string(
'model_dir', None,
'Directory where model output is stored')
flags.DEFINE_string(
'export_dir', None,
'The directory where the exported SavedModel will be stored.')
flags.DEFINE_bool(
'export_to_tpu', False,
help='Whether to export additional metagraph with "serve, tpu" tags'
' in addition to "serve" only metagraph.')
flags.DEFINE_integer(
'iterations_per_loop', 500,
'Number of iterations per TPU training loop.')
flags.DEFINE_integer(
'train_batch_size', 256,
'Global (not per-shard) batch size for training')
flags.DEFINE_integer(
'eval_batch_size', 256,
'Global (not per-shard) batch size for evaluation')
flags.DEFINE_float(
'num_epochs', 48.,
'Number of steps use for training.')
flags.DEFINE_float(
'num_epochs_per_eval', 1.,
'Number of training epochs to run between evaluations.')
flags.DEFINE_string(
'mode', 'train_and_eval',
'Mode to run: train, eval, train_and_eval, or predict')
flags.DEFINE_integer(
'save_checkpoints_steps', None,
'Interval (in steps) at which the model data '
'should be checkpointed. Set to 0 to disable.')
flags.DEFINE_bool(
'enable_hostcall', True,
'Skip the host_call which is executed every training step. This is'
' generally used for generating training summaries (train loss,'
' learning rate, etc...). When --enable_hostcall=True, there could'
' be a performance drop if host_call function is slow and cannot'
' keep up with the TPU-side computation.')
# Model specific parameters
flags.DEFINE_bool('use_aux_head', True, 'Include aux head or not.')
flags.DEFINE_float(
'aux_scaling', 0.4, 'Scaling factor of aux_head')
flags.DEFINE_float(
'batch_norm_decay', 0.9, 'Batch norm decay.')
flags.DEFINE_float(
'batch_norm_epsilon', 1e-5, 'Batch norm epsilon.')
flags.DEFINE_float(
'dense_dropout_keep_prob', None, 'Dense dropout keep probability.')
flags.DEFINE_float(
'drop_connect_keep_prob', 1.0, 'Drop connect keep probability.')
flags.DEFINE_string(
'drop_connect_version', None, 'Drop connect version.')
flags.DEFINE_string(
'cell_name', 'amoeba_net_d', 'Which network to run.')
flags.DEFINE_integer(
'num_cells', 12, 'Total number of cells.')
flags.DEFINE_integer(
'reduction_size', 256, 'Default cell reduction size.')
flags.DEFINE_integer(
'stem_reduction_size', 32, 'Stem filter size.')
flags.DEFINE_float(
'weight_decay', 4e-05, 'Weight decay for slim model.')
flags.DEFINE_integer(
'num_label_classes', 1001, 'The number of classes that images fit into.')
# Training hyper-parameters
flags.DEFINE_float(
'lr', 0.64, 'Learning rate.')
flags.DEFINE_string(
'optimizer', 'rmsprop',
'Optimizer (one of sgd, rmsprop, momentum)')
flags.DEFINE_float(
'moving_average_decay', 0.9999,
'moving average decay rate')
flags.DEFINE_float(
'lr_decay_value', 0.9,
'Exponential decay rate used in learning rate adjustment')
flags.DEFINE_integer(
'lr_num_epochs_per_decay', 1,
'Exponential decay epochs used in learning rate adjustment')
flags.DEFINE_string(
'lr_decay_method', 'exponential',
'Method of decay: exponential, cosine, constant, stepwise')
flags.DEFINE_float(
'lr_warmup_epochs', 3.0,
'Learning rate increased from zero linearly to lr for the first '
'lr_warmup_epochs.')
flags.DEFINE_float('gradient_clipping_by_global_norm', 0,
'gradient_clipping_by_global_norm')
flags.DEFINE_integer(
'image_size', 299, 'Size of image, assuming image height and width.')
flags.DEFINE_integer(
'num_train_images', 1281167, 'The number of images in the training set.')
flags.DEFINE_integer(
'num_eval_images', 50000, 'The number of images in the evaluation set.')
flags.DEFINE_bool(
'use_bp16', True, 'If True, use bfloat16 for activations')
flags.DEFINE_integer(
'eval_timeout', 60*60*24,
'Maximum seconds between checkpoints before evaluation terminates.')
# Inference configuration.
flags.DEFINE_bool(
'inference_with_all_cores', True, 'Whether to round-robin'
'among all cores visible to the host for TPU inference.')
flags.DEFINE_bool(
'add_warmup_requests', True,
'Whether to add warmup requests into the export saved model dir,'
'especially for TPU inference.')
flags.DEFINE_string('model_name', 'amoeba_net',
'Serving model name used for the model server.')
flags.DEFINE_multi_integer(
'inference_batch_sizes', [8],
'Known inference batch sizes used to warm up for each core.')
FLAGS = flags.FLAGS
def build_run_config():
"""Return RunConfig for TPU estimator."""
tpu_cluster_resolver = tf.contrib.cluster_resolver.TPUClusterResolver(
FLAGS.tpu,
zone=FLAGS.tpu_zone,
project=FLAGS.gcp_project)
eval_steps = FLAGS.num_eval_images // FLAGS.eval_batch_size
iterations_per_loop = (eval_steps if FLAGS.mode == 'eval'
else FLAGS.iterations_per_loop)
save_checkpoints_steps = FLAGS.save_checkpoints_steps or iterations_per_loop
run_config = tf.contrib.tpu.RunConfig(
cluster=tpu_cluster_resolver,
model_dir=FLAGS.model_dir,
save_checkpoints_steps=save_checkpoints_steps,
keep_checkpoint_max=None,
tpu_config=tf.contrib.tpu.TPUConfig(
iterations_per_loop=iterations_per_loop,
num_shards=FLAGS.num_shards,
per_host_input_for_training=tf.contrib.tpu.InputPipelineConfig.PER_HOST_V2
))
return run_config
def build_image_serving_input_receiver_fn(shape,
dtype=tf.float32):
"""Returns a input_receiver_fn for raw images during serving."""
def _preprocess_image(encoded_image):
"""Preprocess a single raw image."""
image = tf.image.decode_image(encoded_image, channels=shape[-1])
image.set_shape(shape)
return tf.cast(image, dtype)
def serving_input_receiver_fn():
image_bytes_list = tf.placeholder(
shape=[None],
dtype=tf.string,
)
images = tf.map_fn(
_preprocess_image, image_bytes_list, back_prop=False, dtype=dtype)
return tf.estimator.export.TensorServingInputReceiver(
features=images, receiver_tensors=image_bytes_list)
return serving_input_receiver_fn
def _encode_image(image_array, fmt='PNG'):
"""encodes an (numpy) image array to string.
Args:
image_array: (numpy) image array
fmt: image format to use
Returns:
encoded image string
"""
pil_image = Image.fromarray(image_array)
image_io = io.BytesIO()
pil_image.save(image_io, format=fmt)
return image_io.getvalue()
def write_warmup_requests(savedmodel_dir,
model_name,
image_size,
batch_sizes=None,
num_requests=8):
"""Writes warmup requests for inference into a tfrecord file.
Args:
savedmodel_dir: string, the file to the exported model folder.
model_name: string, a model name used inside the model server.
image_size: int, size of image, assuming image height and width.
batch_sizes: list, a list of batch sizes to create different input requests.
num_requests: int, number of requests per batch size.
Raises:
ValueError: if batch_sizes is not a valid integer list.
"""
if not isinstance(batch_sizes, list) or not batch_sizes:
raise ValueError('batch sizes should be a valid non-empty list.')
extra_assets_dir = os.path.join(savedmodel_dir, 'assets.extra')
tf.gfile.MkDir(extra_assets_dir)
with tf.python_io.TFRecordWriter(
os.path.join(extra_assets_dir, 'tf_serving_warmup_requests')) as writer:
for batch_size in batch_sizes:
for _ in range(num_requests):
request = predict_pb2.PredictRequest()
image = np.uint8(np.random.rand(image_size, image_size, 3) * 255)
request.inputs['input'].CopyFrom(
tf.make_tensor_proto(
[_encode_image(image)] * batch_size, shape=[batch_size]))
request.model_spec.name = model_name
request.model_spec.signature_name = 'serving_default'
log = prediction_log_pb2.PredictionLog(
predict_log=prediction_log_pb2.PredictLog(request=request))
writer.write(log.SerializeToString())
# TODO(ereal): simplify this.
def override_with_flags(hparams):
"""Overrides parameters with flag values."""
override_flag_names = [
'aux_scaling',
'train_batch_size',
'batch_norm_decay',
'batch_norm_epsilon',
'dense_dropout_keep_prob',
'drop_connect_keep_prob',
'drop_connect_version',
'eval_batch_size',
'gradient_clipping_by_global_norm',
'lr',
'lr_decay_method',
'lr_decay_value',
'lr_num_epochs_per_decay',
'moving_average_decay',
'image_size',
'num_cells',
'reduction_size',
'stem_reduction_size',
'num_epochs',
'num_epochs_per_eval',
'optimizer',
'enable_hostcall',
'use_aux_head',
'use_bp16',
'use_tpu',
'lr_warmup_epochs',
'weight_decay',
'num_shards',
'distributed_group_size',
'num_train_images',
'num_eval_images',
'num_label_classes',
]
for flag_name in override_flag_names:
flag_value = getattr(FLAGS, flag_name, 'INVALID')
if flag_value == 'INVALID':
tf.logging.fatal('Unknown flag %s.' % str(flag_name))
if flag_value is not None:
_set_or_add_hparam(hparams, flag_name, flag_value)
def build_hparams():
"""Build tf.Hparams for training Amoeba Net."""
hparams = model_lib.build_hparams(FLAGS.cell_name)
override_with_flags(hparams)
return hparams
def _terminate_eval():
tf.logging.info('Timeout passed with no new checkpoints ... terminating eval')
return True
def _get_next_checkpoint():
return tf.contrib.training.checkpoints_iterator(
FLAGS.model_dir,
timeout=FLAGS.eval_timeout,
timeout_fn=_terminate_eval)
def _set_or_add_hparam(hparams, name, value):
if getattr(hparams, name, None) is None:
hparams.add_hparam(name, value)
else:
hparams.set_hparam(name, value)
def _load_global_step_from_checkpoint_dir(checkpoint_dir):
try:
checkpoint_reader = tf.train.NewCheckpointReader(
tf.train.latest_checkpoint(checkpoint_dir))
return checkpoint_reader.get_tensor(tf.GraphKeys.GLOBAL_STEP)
except: # pylint: disable=bare-except
return 0
def main(_):
mode = FLAGS.mode
data_dir = FLAGS.data_dir
model_dir = FLAGS.model_dir
hparams = build_hparams()
estimator_parmas = {}
train_steps_per_epoch = int(
math.ceil(hparams.num_train_images / float(hparams.train_batch_size)))
eval_steps = hparams.num_eval_images // hparams.eval_batch_size
eval_batch_size = (None if mode == 'train' else
hparams.eval_batch_size)
model = model_lib.AmoebaNetEstimatorModel(hparams, model_dir)
if hparams.use_tpu:
run_config = build_run_config()
image_classifier = tf.contrib.tpu.TPUEstimator(
model_fn=model.model_fn,
use_tpu=True,
config=run_config,
params=estimator_parmas,
predict_batch_size=eval_batch_size,
train_batch_size=hparams.train_batch_size,
eval_batch_size=eval_batch_size,
export_to_tpu=FLAGS.export_to_tpu,
experimental_exported_model_uses_all_cores=FLAGS
.inference_with_all_cores)
else:
save_checkpoints_steps = (FLAGS.save_checkpoints_steps or
FLAGS.iterations_per_loop)
run_config = tf.estimator.RunConfig(
model_dir=FLAGS.model_dir,
save_checkpoints_steps=save_checkpoints_steps)
image_classifier = tf.estimator.Estimator(
model_fn=model.model_fn,
config=run_config,
params=estimator_parmas)
# Input pipelines are slightly different (with regards to shuffling and
# preprocessing) between training and evaluation.
imagenet_train = model_lib.InputPipeline(
is_training=True, data_dir=data_dir, hparams=hparams)
imagenet_eval = model_lib.InputPipeline(
is_training=False, data_dir=data_dir, hparams=hparams)
if hparams.moving_average_decay < 1:
eval_hooks = [model_lib.LoadEMAHook(model_dir,
hparams.moving_average_decay)]
else:
eval_hooks = []
if mode == 'eval':
for checkpoint in _get_next_checkpoint():
tf.logging.info('Starting to evaluate.')
try:
eval_results = image_classifier.evaluate(
input_fn=imagenet_eval.input_fn,
steps=eval_steps,
hooks=eval_hooks,
checkpoint_path=checkpoint)
tf.logging.info('Evaluation results: %s' % eval_results)
except tf.errors.NotFoundError:
# skip checkpoint if it gets deleted prior to evaluation
tf.logging.info('Checkpoint %s no longer exists ... skipping')
elif mode == 'train_and_eval':
current_step = _load_global_step_from_checkpoint_dir(model_dir)
tf.logging.info('Starting training at step=%d.' % current_step)
train_steps_per_eval = int(
hparams.num_epochs_per_eval * train_steps_per_epoch)
# Final Evaluation if training is finished.
if current_step >= hparams.num_epochs * train_steps_per_epoch:
eval_results = image_classifier.evaluate(
input_fn=imagenet_eval.input_fn, steps=eval_steps, hooks=eval_hooks)
tf.logging.info('Evaluation results: %s' % eval_results)
while current_step < hparams.num_epochs * train_steps_per_epoch:
image_classifier.train(
input_fn=imagenet_train.input_fn, steps=train_steps_per_eval)
current_step += train_steps_per_eval
tf.logging.info('Starting evaluation at step=%d.' % current_step)
eval_results = image_classifier.evaluate(
input_fn=imagenet_eval.input_fn, steps=eval_steps, hooks=eval_hooks)
tf.logging.info('Evaluation results: %s' % eval_results)
elif mode == 'predict':
for checkpoint in _get_next_checkpoint():
tf.logging.info('Starting prediction ...')
time_hook = model_lib.SessionTimingHook()
eval_hooks.append(time_hook)
result_iter = image_classifier.predict(
input_fn=imagenet_eval.input_fn,
hooks=eval_hooks,
checkpoint_path=checkpoint,
yield_single_examples=False)
results = list(itertools.islice(result_iter, eval_steps))
tf.logging.info('Inference speed = {} images per second.'.format(
time_hook.compute_speed(len(results) * eval_batch_size)))
elif mode == 'train':
current_step = _load_global_step_from_checkpoint_dir(model_dir)
total_step = int(hparams.num_epochs * train_steps_per_epoch)
if current_step < total_step:
tf.logging.info('Starting training ...')
image_classifier.train(
input_fn=imagenet_train.input_fn,
steps=total_step-current_step)
else:
tf.logging.info('Mode not found.')
if FLAGS.export_dir is not None:
tf.logging.info('Starting exporting saved model ...')
serving_shape = [hparams.image_size, hparams.image_size, 3]
export_path = image_classifier.export_saved_model(
export_dir_base=FLAGS.export_dir,
serving_input_receiver_fn=build_image_serving_input_receiver_fn(
serving_shape),
as_text=True)
if FLAGS.add_warmup_requests:
write_warmup_requests(
export_path,
FLAGS.model_name,
hparams.image_size,
batch_sizes=FLAGS.inference_batch_sizes)
if __name__ == '__main__':
tf.logging.set_verbosity(tf.logging.INFO)
app.run(main)
| [
"tensorflow.contrib.cluster_resolver.TPUClusterResolver",
"tensorflow.contrib.tpu.TPUEstimator",
"tensorflow.estimator.Estimator",
"tensorflow.train.latest_checkpoint",
"tensorflow.gfile.MkDir",
"tensorflow.cast",
"tensorflow.estimator.export.TensorServingInputReceiver",
"tensorflow.placeholder",
"tensorflow.map_fn",
"tensorflow.logging.info",
"tensorflow.logging.set_verbosity",
"tensorflow.image.decode_image",
"tensorflow.contrib.tpu.TPUConfig",
"numpy.random.rand",
"tensorflow.estimator.RunConfig",
"tensorflow.contrib.training.checkpoints_iterator"
] | models/official/amoeba_net/amoeba_net.py | [(44, 'absl.flags.DEFINE_string', 'flags.DEFINE_string', (['"""tpu"""'], {'default': 'None', 'help': '"""The Cloud TPU to use for training. This should be either the name used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 url."""'}), False, 'from absl import flags\n'), (49, 'absl.flags.DEFINE_string', 'flags.DEFINE_string', (['"""gcp_project"""'], {'default': 'None', 'help': '"""Project name for the Cloud TPU-enabled project. If not specified, we will attempt to automatically detect the GCE project from metadata."""'}), False, 'from absl import flags\n'), (54, 'absl.flags.DEFINE_string', 'flags.DEFINE_string', (['"""tpu_zone"""'], {'default': 'None', 'help': '"""GCE zone where the Cloud TPU is located in. 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zeuseyera/baselines-kr | c9926418d2d8efee21ef20d548366eaaaa193011 | import os
import numpy as np
import tensorflow as tf
from collections import deque
def sample(logits):
noise = tf.random_uniform(tf.shape(logits))
return tf.argmax(logits - tf.log(-tf.log(noise)), 1)
def cat_entropy(logits):
a0 = logits - tf.reduce_max(logits, 1, keepdims=True)
ea0 = tf.exp(a0)
z0 = tf.reduce_sum(ea0, 1, keepdims=True)
p0 = ea0 / z0
return tf.reduce_sum(p0 * (tf.log(z0) - a0), 1)
def cat_entropy_softmax(p0):
return - tf.reduce_sum(p0 * tf.log(p0 + 1e-6), axis = 1)
def ortho_init(scale=1.0):
def _ortho_init(shape, dtype, partition_info=None):
#lasagne ortho init for tf
shape = tuple(shape)
if len(shape) == 2:
flat_shape = shape
elif len(shape) == 4: # assumes NHWC
flat_shape = (np.prod(shape[:-1]), shape[-1])
else:
raise NotImplementedError
a = np.random.normal(0.0, 1.0, flat_shape)
u, _, v = np.linalg.svd(a, full_matrices=False)
q = u if u.shape == flat_shape else v # pick the one with the correct shape
q = q.reshape(shape)
return (scale * q[:shape[0], :shape[1]]).astype(np.float32)
return _ortho_init
def conv(x, scope, *, nf, rf, stride, pad='VALID', init_scale=1.0, data_format='NHWC', one_dim_bias=False):
if data_format == 'NHWC':
channel_ax = 3
strides = [1, stride, stride, 1]
bshape = [1, 1, 1, nf]
elif data_format == 'NCHW':
channel_ax = 1
strides = [1, 1, stride, stride]
bshape = [1, nf, 1, 1]
else:
raise NotImplementedError
bias_var_shape = [nf] if one_dim_bias else [1, nf, 1, 1]
nin = x.get_shape()[channel_ax].value
wshape = [rf, rf, nin, nf]
with tf.variable_scope(scope):
w = tf.get_variable("w", wshape, initializer=ortho_init(init_scale))
b = tf.get_variable("b", bias_var_shape, initializer=tf.constant_initializer(0.0))
if not one_dim_bias and data_format == 'NHWC':
b = tf.reshape(b, bshape)
return tf.nn.conv2d(x, w, strides=strides, padding=pad, data_format=data_format) + b
def fc(x, scope, nh, *, init_scale=1.0, init_bias=0.0):
with tf.variable_scope(scope):
nin = x.get_shape()[1].value
w = tf.get_variable("w", [nin, nh], initializer=ortho_init(init_scale))
b = tf.get_variable("b", [nh], initializer=tf.constant_initializer(init_bias))
return tf.matmul(x, w)+b
def batch_to_seq(h, nbatch, nsteps, flat=False):
if flat:
h = tf.reshape(h, [nbatch, nsteps])
else:
h = tf.reshape(h, [nbatch, nsteps, -1])
return [tf.squeeze(v, [1]) for v in tf.split(axis=1, num_or_size_splits=nsteps, value=h)]
def seq_to_batch(h, flat = False):
shape = h[0].get_shape().as_list()
if not flat:
assert(len(shape) > 1)
nh = h[0].get_shape()[-1].value
return tf.reshape(tf.concat(axis=1, values=h), [-1, nh])
else:
return tf.reshape(tf.stack(values=h, axis=1), [-1])
def lstm(xs, ms, s, scope, nh, init_scale=1.0):
nbatch, nin = [v.value for v in xs[0].get_shape()]
with tf.variable_scope(scope):
wx = tf.get_variable("wx", [nin, nh*4], initializer=ortho_init(init_scale))
wh = tf.get_variable("wh", [nh, nh*4], initializer=ortho_init(init_scale))
b = tf.get_variable("b", [nh*4], initializer=tf.constant_initializer(0.0))
c, h = tf.split(axis=1, num_or_size_splits=2, value=s)
for idx, (x, m) in enumerate(zip(xs, ms)):
c = c*(1-m)
h = h*(1-m)
z = tf.matmul(x, wx) + tf.matmul(h, wh) + b
i, f, o, u = tf.split(axis=1, num_or_size_splits=4, value=z)
i = tf.nn.sigmoid(i)
f = tf.nn.sigmoid(f)
o = tf.nn.sigmoid(o)
u = tf.tanh(u)
c = f*c + i*u
h = o*tf.tanh(c)
xs[idx] = h
s = tf.concat(axis=1, values=[c, h])
return xs, s
def _ln(x, g, b, e=1e-5, axes=[1]):
u, s = tf.nn.moments(x, axes=axes, keep_dims=True)
x = (x-u)/tf.sqrt(s+e)
x = x*g+b
return x
def lnlstm(xs, ms, s, scope, nh, init_scale=1.0):
nbatch, nin = [v.value for v in xs[0].get_shape()]
with tf.variable_scope(scope):
wx = tf.get_variable("wx", [nin, nh*4], initializer=ortho_init(init_scale))
gx = tf.get_variable("gx", [nh*4], initializer=tf.constant_initializer(1.0))
bx = tf.get_variable("bx", [nh*4], initializer=tf.constant_initializer(0.0))
wh = tf.get_variable("wh", [nh, nh*4], initializer=ortho_init(init_scale))
gh = tf.get_variable("gh", [nh*4], initializer=tf.constant_initializer(1.0))
bh = tf.get_variable("bh", [nh*4], initializer=tf.constant_initializer(0.0))
b = tf.get_variable("b", [nh*4], initializer=tf.constant_initializer(0.0))
gc = tf.get_variable("gc", [nh], initializer=tf.constant_initializer(1.0))
bc = tf.get_variable("bc", [nh], initializer=tf.constant_initializer(0.0))
c, h = tf.split(axis=1, num_or_size_splits=2, value=s)
for idx, (x, m) in enumerate(zip(xs, ms)):
c = c*(1-m)
h = h*(1-m)
z = _ln(tf.matmul(x, wx), gx, bx) + _ln(tf.matmul(h, wh), gh, bh) + b
i, f, o, u = tf.split(axis=1, num_or_size_splits=4, value=z)
i = tf.nn.sigmoid(i)
f = tf.nn.sigmoid(f)
o = tf.nn.sigmoid(o)
u = tf.tanh(u)
c = f*c + i*u
h = o*tf.tanh(_ln(c, gc, bc))
xs[idx] = h
s = tf.concat(axis=1, values=[c, h])
return xs, s
def conv_to_fc(x):
nh = np.prod([v.value for v in x.get_shape()[1:]])
x = tf.reshape(x, [-1, nh])
return x
def discount_with_dones(rewards, dones, gamma):
discounted = []
r = 0
for reward, done in zip(rewards[::-1], dones[::-1]):
r = reward + gamma*r*(1.-done) # fixed off by one bug
discounted.append(r)
return discounted[::-1]
def find_trainable_variables(key):
return tf.trainable_variables(key)
def make_path(f):
return os.makedirs(f, exist_ok=True)
def constant(p):
return 1
def linear(p):
return 1-p
def middle_drop(p):
eps = 0.75
if 1-p<eps:
return eps*0.1
return 1-p
def double_linear_con(p):
p *= 2
eps = 0.125
if 1-p<eps:
return eps
return 1-p
def double_middle_drop(p):
eps1 = 0.75
eps2 = 0.25
if 1-p<eps1:
if 1-p<eps2:
return eps2*0.5
return eps1*0.1
return 1-p
schedules = {
'linear':linear,
'constant':constant,
'double_linear_con': double_linear_con,
'middle_drop': middle_drop,
'double_middle_drop': double_middle_drop
}
class Scheduler(object):
def __init__(self, v, nvalues, schedule):
self.n = 0.
self.v = v
self.nvalues = nvalues
self.schedule = schedules[schedule]
def value(self):
current_value = self.v*self.schedule(self.n/self.nvalues)
self.n += 1.
return current_value
def value_steps(self, steps):
return self.v*self.schedule(steps/self.nvalues)
class EpisodeStats:
def __init__(self, nsteps, nenvs):
self.episode_rewards = []
for i in range(nenvs):
self.episode_rewards.append([])
self.lenbuffer = deque(maxlen=40) # rolling buffer for episode lengths
self.rewbuffer = deque(maxlen=40) # rolling buffer for episode rewards
self.nsteps = nsteps
self.nenvs = nenvs
def feed(self, rewards, masks):
rewards = np.reshape(rewards, [self.nenvs, self.nsteps])
masks = np.reshape(masks, [self.nenvs, self.nsteps])
for i in range(0, self.nenvs):
for j in range(0, self.nsteps):
self.episode_rewards[i].append(rewards[i][j])
if masks[i][j]:
l = len(self.episode_rewards[i])
s = sum(self.episode_rewards[i])
self.lenbuffer.append(l)
self.rewbuffer.append(s)
self.episode_rewards[i] = []
def mean_length(self):
if self.lenbuffer:
return np.mean(self.lenbuffer)
else:
return 0 # on the first params dump, no episodes are finished
def mean_reward(self):
if self.rewbuffer:
return np.mean(self.rewbuffer)
else:
return 0
# For ACER
def get_by_index(x, idx):
assert(len(x.get_shape()) == 2)
assert(len(idx.get_shape()) == 1)
idx_flattened = tf.range(0, x.shape[0]) * x.shape[1] + idx
y = tf.gather(tf.reshape(x, [-1]), # flatten input
idx_flattened) # use flattened indices
return y
def check_shape(ts,shapes):
i = 0
for (t,shape) in zip(ts,shapes):
assert t.get_shape().as_list()==shape, "id " + str(i) + " shape " + str(t.get_shape()) + str(shape)
i += 1
def avg_norm(t):
return tf.reduce_mean(tf.sqrt(tf.reduce_sum(tf.square(t), axis=-1)))
def gradient_add(g1, g2, param):
print([g1, g2, param.name])
assert (not (g1 is None and g2 is None)), param.name
if g1 is None:
return g2
elif g2 is None:
return g1
else:
return g1 + g2
def q_explained_variance(qpred, q):
_, vary = tf.nn.moments(q, axes=[0, 1])
_, varpred = tf.nn.moments(q - qpred, axes=[0, 1])
check_shape([vary, varpred], [[]] * 2)
return 1.0 - (varpred / vary)
| [
"tensorflow.concat",
"tensorflow.reduce_sum",
"tensorflow.stack",
"tensorflow.tanh",
"numpy.mean",
"tensorflow.nn.conv2d",
"numpy.linalg.svd",
"numpy.reshape",
"tensorflow.nn.moments",
"tensorflow.squeeze",
"tensorflow.square",
"tensorflow.trainable_variables",
"tensorflow.matmul",
"tensorflow.nn.sigmoid",
"tensorflow.shape",
"tensorflow.exp",
"tensorflow.split",
"tensorflow.reduce_max",
"tensorflow.range",
"tensorflow.reshape",
"tensorflow.constant_initializer",
"numpy.random.normal",
"tensorflow.log",
"numpy.prod",
"tensorflow.variable_scope",
"tensorflow.sqrt"
] | baselines/a2c/utils.py | [(12, 'tensorflow.exp', 'tf.exp', (['a0'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['ea0', '(1)'], {'keepdims': '(True)'}), True, 'import tensorflow as tf\n'), (89, 'tensorflow.split', 'tf.split', ([], {'axis': '(1)', 'num_or_size_splits': '(2)', 'value': 's'}), True, 'import tensorflow as tf\n'), (102, 'tensorflow.concat', 'tf.concat', ([], {'axis': '(1)', 'values': '[c, h]'}), True, 'import tensorflow as tf\n'), (106, 'tensorflow.nn.moments', 'tf.nn.moments', (['x'], {'axes': 'axes', 'keep_dims': '(True)'}), True, 'import tensorflow as tf\n'), (127, 'tensorflow.split', 'tf.split', ([], {'axis': '(1)', 'num_or_size_splits': '(2)', 'value': 's'}), True, 'import tensorflow as tf\n'), (142, 'tensorflow.concat', 'tf.concat', ([], {'axis': '(1)', 'values': '[c, h]'}), True, 'import tensorflow as tf\n'), (148, 'tensorflow.reshape', 'tf.reshape', (['x', '[-1, nh]'], {}), True, 'import tensorflow as tf\n'), (160, 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rejux/rklearn-lib | 56bc4f087a8c971cb545d65b0c1f9bafaaec3d67 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#############
## Imports ##
#############
import os
import sys ; sys.path.append("/home/developer/workspace/rklearn-lib")
import tensorflow as tf
from rklearn.tfoo_v1 import BaseModel
#################
## CIFAR10CNN ##
#################
class CIFAR10CNN(BaseModel):
################
## __init__() ##
################
def __init__(self, config, logger = None):
super().__init__(config, logger)
try:
# these parameters are sent to the trainer through the model because it is easier
self.num_epochs = self.config.cifar10_cnn["num_epochs"]
self.learning_rate = self.config.cifar10_cnn["learning_rate"]
self.max_to_keep = self.config.cifar10_cnn["max_to_keep"]
self.checkpoint_dir = self.config.cifar10_cnn["checkpoint_dir"]
self.model_dir = self.config.cifar10_cnn["model_dir"]
os.makedirs(self.checkpoint_dir, exist_ok = True)
os.makedirs(self.model_dir, exist_ok = True)
except Exception as e:
exc_type, exc_obj, exc_tb = sys.exc_info()
fname = os.path.split(exc_tb.tb_frame.f_code.co_filename)[1]
logger.error("error msg = {}, error type = {}, error file = {}, error line = {}".format(e, exc_type, fname, exc_tb.tb_lineno))
raise RuntimeError("Error in CIFAR10CNN construction regarding the checkpoints and model directories!")
###################
## build_model() ##
###################
def build_model(self):
"""
Build the custom CNN for the CIFAR-10 dataset.
"""
# The input data holders (cf. shapes after prepa)
self.X = tf.compat.v1.placeholder(tf.float32, shape = (None,
self.config.data["image_size"],
self.config.data["image_size"],
self.config.data["num_channels"]), name="X") # ex. (50000, 32, 32, 3)
self.y = tf.compat.v1.placeholder(tf.int32, shape = (None, self.config.data["num_categories"]), name="y") # ex. (50000, 10)
self.train = tf.compat.v1.placeholder(tf.bool)
# The CNN architecture = conv/poo layers + flatten layer + connected layers
with tf.name_scope("cnn"):
# a. Create convolution/pooling layers = conv + drop + pool + conv + drop + pool + conv + pool + conv + drop
self.conv1 = tf.layers.conv2d(self.X,
self.config.cifar10_cnn["num_filters"],
self.config.cifar10_cnn["filter_size"],
padding='same', activation=tf.nn.relu)
self.drop1 = tf.layers.dropout(self.conv1, self.config.cifar10_cnn["keep_prob"], training=self.train)
self.pool1 = tf.layers.max_pooling2d(self.drop1, 2, 2)
self.conv2 = tf.layers.conv2d(self.pool1,
self.config.cifar10_cnn["num_filters"],
self.config.cifar10_cnn["filter_size"],
padding='same', activation=tf.nn.relu)
self.drop2 = tf.layers.dropout(self.conv2, self.config.cifar10_cnn["keep_prob"], training=self.train)
self.pool2 = tf.layers.max_pooling2d(self.drop2, 2, 2)
self.conv3 = tf.layers.conv2d(self.pool2,
self.config.cifar10_cnn["num_filters"],
self.config.cifar10_cnn["filter_size"],
padding='same', activation=tf.nn.relu)
self.pool3 = tf.layers.max_pooling2d(self.conv3, 2, 2)
self.conv4 = tf.layers.conv2d(self.pool3,
self.config.cifar10_cnn["num_filters"],
self.config.cifar10_cnn["filter_size"],
padding='same', activation=tf.nn.relu)
self.drop3 = tf.layers.dropout(self.conv4, self.config.cifar10_cnn["keep_prob"], training=self.train)
# b. Flatten input data
self.flatten = tf.reshape(self.drop3, [-1, self.config.cifar10_cnn["fc1_nb_units"]])
# Create connected layers: fc1, fc2
with tf.contrib.framework.arg_scope([tf.contrib.layers.fully_connected],
normalizer_fn=tf.contrib.layers.batch_norm,
normalizer_params={"is_training": self.train}):
self.fc1 = tf.contrib.layers.fully_connected(self.flatten, self.config.cifar10_cnn["fc1_nb_units"])
self.fc2 = tf.contrib.layers.fully_connected(self.fc1, self.config.data["num_categories"], activation_fn=None)
# Compute loss
with tf.name_scope("loss"):
self.loss = tf.reduce_mean(tf.nn.softmax_cross_entropy_with_logits(logits=self.fc2, labels=self.y))
# Optimizer
with tf.name_scope("training_op"):
self.training_op = tf.compat.v1.train.AdamOptimizer(self.learning_rate).minimize(self.loss)
# Perf metrics
with tf.name_scope("accuracy"):
prediction = tf.equal(tf.argmax(self.fc2, 1), tf.argmax(self.y, 1))
self.accuracy = tf.reduce_mean(tf.cast(prediction, tf.float32))
| [
"tensorflow.layers.conv2d",
"tensorflow.nn.softmax_cross_entropy_with_logits",
"tensorflow.compat.v1.train.AdamOptimizer",
"tensorflow.layers.dropout",
"tensorflow.reshape",
"tensorflow.contrib.framework.arg_scope",
"tensorflow.layers.max_pooling2d",
"tensorflow.cast",
"tensorflow.contrib.layers.fully_connected",
"tensorflow.compat.v1.placeholder",
"tensorflow.name_scope",
"tensorflow.argmax"
] | rklearn/tests/it/cifar10_cnn.py | [(9, 'sys.path.append', 'sys.path.append', (['"""/home/developer/workspace/rklearn-lib"""'], {}), False, 'import sys\n'), (57, 'tensorflow.compat.v1.placeholder', 'tf.compat.v1.placeholder', (['tf.float32'], {'shape': "(None, self.config.data['image_size'], self.config.data['image_size'], self\n .config.data['num_channels'])", 'name': '"""X"""'}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.compat.v1.placeholder', 'tf.compat.v1.placeholder', (['tf.int32'], {'shape': "(None, self.config.data['num_categories'])", 'name': '"""y"""'}), True, 'import tensorflow as tf\n'), (62, 'tensorflow.compat.v1.placeholder', 'tf.compat.v1.placeholder', (['tf.bool'], {}), True, 'import tensorflow as tf\n'), (37, 'os.makedirs', 'os.makedirs', (['self.checkpoint_dir'], {'exist_ok': '(True)'}), False, 'import os\n'), (38, 'os.makedirs', 'os.makedirs', (['self.model_dir'], {'exist_ok': '(True)'}), False, 'import os\n'), (65, 'tensorflow.name_scope', 'tf.name_scope', (['"""cnn"""'], {}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.layers.conv2d', 'tf.layers.conv2d', (['self.X', "self.config.cifar10_cnn['num_filters']", "self.config.cifar10_cnn['filter_size']"], {'padding': '"""same"""', 'activation': 'tf.nn.relu'}), True, 'import tensorflow as tf\n'), (72, 'tensorflow.layers.dropout', 'tf.layers.dropout', (['self.conv1', "self.config.cifar10_cnn['keep_prob']"], {'training': 'self.train'}), True, 'import tensorflow as tf\n'), (73, 'tensorflow.layers.max_pooling2d', 'tf.layers.max_pooling2d', (['self.drop1', '(2)', '(2)'], {}), True, 'import tensorflow as tf\n'), (75, 'tensorflow.layers.conv2d', 'tf.layers.conv2d', (['self.pool1', "self.config.cifar10_cnn['num_filters']", "self.config.cifar10_cnn['filter_size']"], {'padding': '"""same"""', 'activation': 'tf.nn.relu'}), True, 'import tensorflow as tf\n'), (79, 'tensorflow.layers.dropout', 'tf.layers.dropout', (['self.conv2', "self.config.cifar10_cnn['keep_prob']"], {'training': 'self.train'}), True, 'import tensorflow as tf\n'), (80, 'tensorflow.layers.max_pooling2d', 'tf.layers.max_pooling2d', (['self.drop2', '(2)', '(2)'], {}), True, 'import tensorflow as tf\n'), (82, 'tensorflow.layers.conv2d', 'tf.layers.conv2d', (['self.pool2', "self.config.cifar10_cnn['num_filters']", "self.config.cifar10_cnn['filter_size']"], {'padding': '"""same"""', 'activation': 'tf.nn.relu'}), True, 'import tensorflow as tf\n'), (86, 'tensorflow.layers.max_pooling2d', 'tf.layers.max_pooling2d', (['self.conv3', '(2)', '(2)'], {}), True, 'import tensorflow as tf\n'), (88, 'tensorflow.layers.conv2d', 'tf.layers.conv2d', (['self.pool3', "self.config.cifar10_cnn['num_filters']", "self.config.cifar10_cnn['filter_size']"], {'padding': '"""same"""', 'activation': 'tf.nn.relu'}), True, 'import tensorflow as tf\n'), (92, 'tensorflow.layers.dropout', 'tf.layers.dropout', (['self.conv4', "self.config.cifar10_cnn['keep_prob']"], {'training': 'self.train'}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.reshape', 'tf.reshape', (['self.drop3', "[-1, self.config.cifar10_cnn['fc1_nb_units']]"], {}), True, 'import tensorflow as tf\n'), (41, 'sys.exc_info', 'sys.exc_info', ([], {}), False, 'import sys\n'), (98, 'tensorflow.contrib.framework.arg_scope', 'tf.contrib.framework.arg_scope', (['[tf.contrib.layers.fully_connected]'], {'normalizer_fn': 'tf.contrib.layers.batch_norm', 'normalizer_params': "{'is_training': self.train}"}), True, 'import tensorflow as tf\n'), (101, 'tensorflow.contrib.layers.fully_connected', 'tf.contrib.layers.fully_connected', (['self.flatten', "self.config.cifar10_cnn['fc1_nb_units']"], {}), True, 'import tensorflow as tf\n'), (102, 'tensorflow.contrib.layers.fully_connected', 'tf.contrib.layers.fully_connected', (['self.fc1', "self.config.data['num_categories']"], {'activation_fn': 'None'}), True, 'import tensorflow as tf\n'), (105, 'tensorflow.name_scope', 'tf.name_scope', (['"""loss"""'], {}), True, 'import tensorflow as tf\n'), (109, 'tensorflow.name_scope', 'tf.name_scope', (['"""training_op"""'], {}), True, 'import tensorflow as tf\n'), (113, 'tensorflow.name_scope', 'tf.name_scope', (['"""accuracy"""'], {}), True, 'import tensorflow as tf\n'), (42, 'os.path.split', 'os.path.split', (['exc_tb.tb_frame.f_code.co_filename'], {}), False, 'import os\n'), (106, 'tensorflow.nn.softmax_cross_entropy_with_logits', 'tf.nn.softmax_cross_entropy_with_logits', ([], {'logits': 'self.fc2', 'labels': 'self.y'}), True, 'import tensorflow as tf\n'), (114, 'tensorflow.argmax', 'tf.argmax', (['self.fc2', '(1)'], {}), True, 'import tensorflow as tf\n'), (114, 'tensorflow.argmax', 'tf.argmax', (['self.y', '(1)'], {}), True, 'import tensorflow as tf\n'), (115, 'tensorflow.cast', 'tf.cast', (['prediction', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (110, 'tensorflow.compat.v1.train.AdamOptimizer', 'tf.compat.v1.train.AdamOptimizer', (['self.learning_rate'], {}), True, 'import tensorflow as tf\n')] |
topsun888/tensorflow | bad7c50b9dc9789ad7dd0a62daca40b7269841ed | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""Monitors allow user instrumentation of the training process.
Monitors are useful to track training, report progress, request early
stopping and more. Monitors use the observer pattern and notify at the following
points:
- when training begins
- before a training step
- after a training step
- when training ends
Monitors are not intended to be reusable.
There are a few pre-defined monitors:
- CaptureVariable: saves a variable's values
- GraphDump: intended for debug only - saves all tensor values
- PrintTensor: outputs one or more tensor values to log
- SummarySaver: saves summaries to a summary writer
- ValidationMonitor: runs model validation, by periodically calculating eval
metrics on a separate data set; supports optional early stopping
For more specific needs, you can create custom monitors by extending one of the
following classes:
- BaseMonitor: the base class for all monitors
- EveryN: triggers a callback every N training steps
Example:
class ExampleMonitor(monitors.BaseMonitor):
def __init__(self):
print 'Init'
def begin(self, max_steps):
print 'Starting run. Will train until step %d.' % max_steps
def end(self):
print 'Completed run.'
def step_begin(self, step):
print 'About to run step %d...' % step
return ['loss_1:0']
def step_end(self, step, outputs):
print 'Done running step %d. The value of "loss" tensor: %s' % (
step, outputs['loss_1:0'])
linear_regressor = LinearRegressor()
example_monitor = ExampleMonitor()
linear_regressor.fit(
x, y, steps=2, batch_size=1, monitors=[example_monitor])
@@get_default_monitors
@@BaseMonitor
@@CaptureVariable
@@CheckpointSaver
@@EveryN
@@ExportMonitor
@@GraphDump
@@LoggingTrainable
@@NanLoss
@@PrintTensor
@@StepCounter
@@StopAtStep
@@SummarySaver
@@ValidationMonitor
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import inspect
import os
import time
import numpy as np
import six
from tensorflow.contrib.framework import deprecated_arg_values
from tensorflow.contrib.framework.python.ops import variables as contrib_variables
from tensorflow.contrib.learn.python.learn import session_run_hook
from tensorflow.contrib.learn.python.learn.summary_writer_cache import SummaryWriterCache
from tensorflow.core.framework.summary_pb2 import Summary
from tensorflow.core.util.event_pb2 import SessionLog
from tensorflow.python.framework import ops
from tensorflow.python.platform import tf_logging as logging
from tensorflow.python.training import saver as saver_lib
from tensorflow.python.training import summary_io
# TODO(ptucker): Split each monitor class into a separate file.
# TODO(ptucker): Fail if epoch or step does not monotonically increase?
class BaseMonitor(object):
"""Base class for Monitors.
Defines basic interfaces of Monitors.
Monitors can either be run on all workers or, more commonly, restricted
to run exclusively on the elected chief worker.
"""
def __init__(self):
self._begun = False
self._current_epoch = None
self._current_step = None
self._max_steps = None
self._estimator = None
self._estimator_locked = False
@property
def run_on_all_workers(self):
return False
def set_estimator(self, estimator):
"""A setter called automatically by the target estimator.
If the estimator is locked, this method does nothing.
Args:
estimator: the estimator that this monitor monitors.
Raises:
ValueError: if the estimator is None.
"""
if self._estimator_locked:
return
if estimator is None:
raise ValueError("Missing estimator.")
# TODO(mdan): This should fail if called twice with the same estimator.
self._estimator = estimator
def _lock_estimator(self):
"""Locks the estimator until _unlock_estimator is called."""
self._estimator_locked = True
def _unlock_estimator(self):
"""Unlocks the estimator."""
self._estimator_locked = False
def begin(self, max_steps=None):
"""Called at the beginning of training.
When called, the default graph is the one we are executing.
Args:
max_steps: `int`, the maximum global step this training will run until.
Raises:
ValueError: if we've already begun a run.
"""
if self._begun:
raise ValueError("begin called twice without end.")
self._max_steps = max_steps
self._begun = True
def end(self, session=None):
"""Callback at the end of training/evaluation.
Args:
session: A `tf.Session` object that can be used to run ops.
Raises:
ValueError: if we've not begun a run.
"""
_ = session
if not self._begun:
raise ValueError("end called without begin.")
self._max_steps = None
self._begun = False
def epoch_begin(self, epoch):
"""Begin epoch.
Args:
epoch: `int`, the epoch number.
Raises:
ValueError: if we've already begun an epoch, or `epoch` < 0.
"""
if self._current_epoch is not None:
raise ValueError("epoch_begin called twice without epoch_end.")
if epoch < 0:
raise ValueError("Invalid epoch %s." % epoch)
self._current_epoch = epoch
def epoch_end(self, epoch):
"""End epoch.
Args:
epoch: `int`, the epoch number.
Raises:
ValueError: if we've not begun an epoch, or `epoch` number does not match.
"""
if self._current_epoch != epoch:
raise ValueError(
"epoch_end expected %s but got %s.", self._current_epoch, epoch)
self._current_epoch = None
def step_begin(self, step):
"""Callback before training step begins.
You may use this callback to request evaluation of additional tensors
in the graph.
Args:
step: `int`, the current value of the global step.
Returns:
List of `Tensor` objects or string tensor names to be run.
Raises:
ValueError: if we've already begun a step, or `step` < 0, or
`step` > `max_steps`.
"""
if (step < 0) or (
(self._max_steps is not None) and (step > self._max_steps)):
raise ValueError("Invalid step %s." % step)
self._current_step = step
return []
def step_end(self, step, output): # pylint: disable=unused-argument
"""Callback after training step finished.
This callback provides access to the tensors/ops evaluated at this step,
including the additional tensors for which evaluation was requested in
`step_begin`.
In addition, the callback has the opportunity to stop training by returning
`True`. This is useful for early stopping, for example.
Note that this method is not called if the call to `Session.run()` that
followed the last call to `step_begin()` failed.
Args:
step: `int`, the current value of the global step.
output: `dict` mapping `string` values representing tensor names to
the value resulted from running these tensors. Values may be either
scalars, for scalar tensors, or Numpy `array`, for non-scalar tensors.
Returns:
`bool`. True if training should stop.
Raises:
ValueError: if we've not begun a step, or `step` number does not match.
"""
if self._current_step != step:
raise ValueError(
"step_end expected %s but got %s.", self._current_step, step)
self._current_step = None
return False
def post_step(self, step, session): # pylint: disable=unused-argument
"""Callback after the step is finished.
Called after step_end and receives session to perform extra session.run
calls. If failure occurred in the process, will be called as well.
Args:
step: `int`, global step of the model.
session: `Session` object.
"""
_ = step, session
def _extract_output(outputs, request):
if request in outputs:
return outputs[request]
return outputs[request.name]
class EveryN(BaseMonitor):
"""Base class for monitors that execute callbacks every N steps.
This class adds three new callbacks:
- every_n_step_begin
- every_n_step_end
- every_n_post_step
The callbacks are executed every n steps, or optionally every step for the
first m steps, where m and n can both be user-specified.
When extending this class, note that if you wish to use any of the
`BaseMonitor` callbacks, you must call their respective super implementation:
def step_begin(self, step):
super(ExampleMonitor, self).step_begin(step)
return []
Failing to call the super implementation will cause unpredictible behavior.
The `every_n_post_step()` callback is also called after the last step if it
was not already called through the regular conditions. Note that
`every_n_step_begin()` and `every_n_step_end()` do not receive that special
treatment.
"""
# TODO(ipolosukhin): Add also every n seconds.
def __init__(self, every_n_steps=100, first_n_steps=1):
"""Initializes an `EveryN` monitor.
Args:
every_n_steps: `int`, the number of steps to allow between callbacks.
first_n_steps: `int`, specifying the number of initial steps during
which the callbacks will always be executed, regardless of the value
of `every_n_steps`. Note that this value is relative to the global step
"""
super(EveryN, self).__init__()
self._every_n_steps = every_n_steps
self._first_n_steps = first_n_steps
# Last step in the model.
self._last_successful_step = None
# Last step at which we called one of the every_n methods
self._last_active_step = 0
self._every_n_step_begin_called = False
def every_n_step_begin(self, step): # pylint: disable=unused-argument
"""Callback before every n'th step begins.
Args:
step: `int`, the current value of the global step.
Returns:
A `list` of tensors that will be evaluated at this step.
"""
return []
def every_n_step_end(self, step, outputs): # pylint: disable=unused-argument
"""Callback after every n'th step finished.
This callback provides access to the tensors/ops evaluated at this step,
including the additional tensors for which evaluation was requested in
`step_begin`.
In addition, the callback has the opportunity to stop training by returning
`True`. This is useful for early stopping, for example.
Args:
step: `int`, the current value of the global step.
outputs: `dict` mapping `string` values representing tensor names to
the value resulted from running these tensors. Values may be either
scalars, for scalar tensors, or Numpy `array`, for non-scalar tensors.
Returns:
`bool`. True if training should stop.
"""
return False
def every_n_post_step(self, step, session):
"""Callback after a step is finished or `end()` is called.
Args:
step: `int`, the current value of the global step.
session: `Session` object.
"""
pass
def step_begin(self, step):
"""Overrides `BaseMonitor.step_begin`.
When overriding this method, you must call the super implementation.
Args:
step: `int`, the current value of the global step.
Returns:
A `list`, the result of every_n_step_begin, if that was called this step,
or an empty list otherwise.
Raises:
ValueError: if called more than once during a step.
"""
super(EveryN, self).step_begin(step)
if (step <= self._first_n_steps or
step >= (self._every_n_steps + self._last_active_step) or
step == self._max_steps): # Note: max_steps can be None here.
self._every_n_step_begin_called = True
return self.every_n_step_begin(step)
self._every_n_step_begin_called = False
return []
def step_end(self, step, output):
"""Overrides `BaseMonitor.step_end`.
When overriding this method, you must call the super implementation.
Args:
step: `int`, the current value of the global step.
output: `dict` mapping `string` values representing tensor names to
the value resulted from running these tensors. Values may be either
scalars, for scalar tensors, or Numpy `array`, for non-scalar tensors.
Returns:
`bool`, the result of every_n_step_end, if that was called this step,
or `False` otherwise.
"""
super(EveryN, self).step_end(step, output)
if self._every_n_step_begin_called:
return self.every_n_step_end(step, output)
return False
def post_step(self, step, session):
super(EveryN, self).post_step(step, session)
if self._every_n_step_begin_called:
self.every_n_post_step(step, session)
self._last_active_step = step
self._last_successful_step = step
def end(self, session=None):
super(EveryN, self).end(session=session)
if self._last_successful_step != self._last_active_step:
self.every_n_post_step(self._last_successful_step, session)
class StopAtStep(BaseMonitor):
"""Monitor to request stop at a specified step."""
def __init__(self, num_steps=None, last_step=None):
"""Create a StopAtStep monitor.
This monitor requests stop after either a number of steps have been
executed or a last step has been reached. Only of the two options can be
specified.
if `num_steps` is specified, it indicates the number of steps to execute
after `begin()` is called. If instead `last_step` is specified, it
indicates the last step we want to execute, as passed to the `step_begin()`
call.
Args:
num_steps: Number of steps to execute.
last_step: Step after which to stop.
Raises:
ValueError: If one of the arguments is invalid.
"""
super(StopAtStep, self).__init__()
if num_steps is None and last_step is None:
raise ValueError("One of num_steps or last_step must be specified.")
if num_steps is not None and last_step is not None:
raise ValueError("Only one of num_steps or last_step can be specified.")
self._num_steps = num_steps
self._last_step = last_step
@property
def run_on_all_workers(self):
return True
def step_begin(self, step):
super(StopAtStep, self).step_begin(step)
if self._last_step is None:
self._last_step = step + self._num_steps - 1
return []
def step_end(self, step, output):
super(StopAtStep, self).step_end(step, output)
return step >= self._last_step
# TODO(ptucker): Rename to LoggingTensor since it's not writing to stdout.
class PrintTensor(EveryN):
"""Prints given tensors every N steps.
This is an `EveryN` monitor and has consistent semantic for `every_n`
and `first_n`.
The tensors will be printed to the log, with `INFO` severity.
"""
def __init__(self, tensor_names, every_n=100, first_n=1):
"""Initializes a PrintTensor monitor.
Args:
tensor_names: `dict` of tag to tensor names or
`iterable` of tensor names (strings).
every_n: `int`, print every N steps. See `PrintN.`
first_n: `int`, also print the first N steps. See `PrintN.`
"""
super(PrintTensor, self).__init__(every_n, first_n)
if not isinstance(tensor_names, dict):
tensor_names = {item: item for item in tensor_names}
self._tensor_names = tensor_names
def every_n_step_begin(self, step):
super(PrintTensor, self).every_n_step_begin(step)
return list(self._tensor_names.values())
def every_n_step_end(self, step, outputs):
super(PrintTensor, self).every_n_step_end(step, outputs)
stats = []
for tag, tensor_name in six.iteritems(self._tensor_names):
if tensor_name in outputs:
stats.append("%s = %s" % (tag,
str(_extract_output(outputs, tensor_name))))
logging.info("Step %d: %s", step, ", ".join(stats))
class LoggingTrainable(EveryN):
"""Writes trainable variable values into log every N steps.
Write the tensors in trainable variables `every_n` steps,
starting with the `first_n`th step.
"""
def __init__(self, scope=None, every_n=100, first_n=1):
"""Initializes LoggingTrainable monitor.
Args:
scope: An optional string to match variable names using re.match.
every_n: Print every N steps.
first_n: Print first N steps.
"""
super(LoggingTrainable, self).__init__(every_n, first_n)
self._scope = scope
def every_n_step_begin(self, step):
super(LoggingTrainable, self).every_n_step_begin(step)
# Get a list of trainable variables at the begining of every N steps.
# We cannot get this in __init__ because train_op has not been generated.
trainables = ops.get_collection(ops.GraphKeys.TRAINABLE_VARIABLES,
scope=self._scope)
self._names = {}
for var in trainables:
self._names[var.name] = var.value().name
return list(self._names.values())
def every_n_step_end(self, step, outputs):
super(LoggingTrainable, self).every_n_step_end(step, outputs)
stats = []
for tag, tensor_name in six.iteritems(self._names):
if tensor_name in outputs:
stats.append("%s = %s" % (tag,
str(_extract_output(outputs, tensor_name))))
logging.info("Logging Trainable: Step %d: %s", step, ", ".join(stats))
class SummarySaver(EveryN):
"""Saves summaries every N steps."""
def __init__(self,
summary_op,
save_steps=100,
output_dir=None,
summary_writer=None,
scaffold=None):
"""Initializes a `SummarySaver` monitor.
Args:
summary_op: `Tensor` of type `string`. A serialized `Summary` protocol
buffer, as output by TF summary methods like `scalar_summary` or
`merge_all_summaries`.
save_steps: `int`, save summaries every N steps. See `EveryN`.
output_dir: `string`, the directory to save the summaries to. Only used
if no `summary_writer` is supplied.
summary_writer: `SummaryWriter`. If `None` and an `output_dir` was passed,
one will be created accordingly.
scaffold: `Scaffold` to get summary_op if it's not provided.
"""
# TODO(ipolosukhin): Implement every N seconds.
super(SummarySaver, self).__init__(every_n_steps=save_steps)
self._summary_op = summary_op
self._summary_writer = summary_writer
if summary_writer is None and output_dir:
self._summary_writer = summary_io.SummaryWriter(output_dir)
self._scaffold = scaffold
# TODO(mdan): Throw an error if output_dir and summary_writer are None.
def set_estimator(self, estimator):
super(SummarySaver, self).set_estimator(estimator)
# TODO(mdan): This line looks redundant.
if self._summary_writer is None:
self._summary_writer = summary_io.SummaryWriter(estimator.model_dir)
def every_n_step_begin(self, step):
super(SummarySaver, self).every_n_step_begin(step)
if self._summary_op is None and self._scaffold is not None:
self._summary_op = self._scaffold.summary_op
if self._summary_op is not None:
return [self._summary_op]
return []
def every_n_step_end(self, step, outputs):
super(SummarySaver, self).every_n_step_end(step, outputs)
if self._summary_op is not None:
summary_strs = _extract_output(outputs, self._summary_op)
if self._summary_writer:
self._summary_writer.add_summary(summary_strs, step)
return False
def end(self, session=None):
super(SummarySaver, self).end(session=session)
if self._summary_writer:
self._summary_writer.flush()
class ValidationMonitor(EveryN):
"""Runs evaluation of a given estimator, at most every N steps.
Note that the evaluation is done based on the saved checkpoint, which will
usually be older than the current step.
Can do early stopping on validation metrics if `early_stopping_rounds` is
provided.
"""
def __init__(self, x=None, y=None, input_fn=None, batch_size=None,
eval_steps=None,
every_n_steps=100, metrics=None, early_stopping_rounds=None,
early_stopping_metric="loss",
early_stopping_metric_minimize=True, name=None):
"""Initializes a ValidationMonitor.
Args:
x: See `BaseEstimator.evaluate`.
y: See `BaseEstimator.evaluate`.
input_fn: See `BaseEstimator.evaluate`.
batch_size: See `BaseEstimator.evaluate`.
eval_steps: See `BaseEstimator.evaluate`.
every_n_steps: Check for new checkpoints to evaluate every N steps. If a
new checkpoint is found, it is evaluated. See `EveryN`.
metrics: See `BaseEstimator.evaluate`.
early_stopping_rounds: `int`. If the metric indicated by
`early_stopping_metric` does not change according to
`early_stopping_metric_minimize` for this many steps, then training
will be stopped.
early_stopping_metric: `string`, name of the metric to check for early
stopping.
early_stopping_metric_minimize: `bool`, True if `early_stopping_metric` is
expected to decrease (thus early stopping occurs when this metric
stops decreasing), False if `early_stopping_metric` is expected to
increase. Typically, `early_stopping_metric_minimize` is True for
loss metrics like mean squared error, and False for performance
metrics like accuracy.
name: See `BaseEstimator.evaluate`.
Raises:
ValueError: If both x and input_fn are provided.
"""
super(ValidationMonitor, self).__init__(every_n_steps=every_n_steps,
first_n_steps=-1)
# TODO(mdan): Checks like this are already done by evaluate.
if x is None and input_fn is None:
raise ValueError("Either x or input_fn should be provided.")
self.x = x
self.y = y
self.input_fn = input_fn
self.batch_size = batch_size
self.eval_steps = eval_steps
self.metrics = metrics
self.early_stopping_rounds = early_stopping_rounds
self.early_stopping_metric = early_stopping_metric
self.early_stopping_metric_minimize = early_stopping_metric_minimize
self.name = name
self._best_value_step = None
self._best_value = None
self._early_stopped = False
self._latest_path = None
self._latest_path_step = None
@property
def early_stopped(self):
"""Returns True if this monitor caused an early stop."""
return self._early_stopped
@property
def best_step(self):
"""Returns the step at which the best early stopping metric was found."""
return self._best_value_step
@property
def best_value(self):
"""Returns the best early stopping metric value found so far."""
return self._best_value
def every_n_step_end(self, step, outputs):
super(ValidationMonitor, self).every_n_step_end(step, outputs)
# TODO(mdan): The use of step below is probably misleading.
# The code should probably use the step from the checkpoint, because
# that's what is being evaluated.
if self._estimator is None:
raise ValueError("Missing call to set_estimator.")
# Check that we are not running evaluation on the same checkpoint.
latest_path = saver_lib.latest_checkpoint(self._estimator.model_dir)
if latest_path is None:
logging.debug("Skipping evaluation since model has not been saved yet "
"at step %d.", step)
return False
if latest_path is not None and latest_path == self._latest_path:
logging.debug("Skipping evaluation due to same checkpoint %s for step %d "
"as for step %d.", latest_path, step,
self._latest_path_step)
return False
self._latest_path = latest_path
self._latest_path_step = step
# Run evaluation and log it.
validation_outputs = self._estimator.evaluate(
x=self.x, y=self.y, input_fn=self.input_fn, batch_size=self.batch_size,
steps=self.eval_steps, metrics=self.metrics, name=self.name)
stats = []
for name in validation_outputs:
stats.append("%s = %s" % (name, str(validation_outputs[name])))
logging.info("Validation (step %d): %s", step, ", ".join(stats))
# Early stopping logic.
if self.early_stopping_rounds is not None:
if self.early_stopping_metric not in validation_outputs:
raise ValueError("Metric %s missing from outputs %s." % (
self.early_stopping_metric, set(validation_outputs.keys())))
current_value = validation_outputs[self.early_stopping_metric]
if (self._best_value is None or (self.early_stopping_metric_minimize and
(current_value < self._best_value)) or
(not self.early_stopping_metric_minimize and
(current_value > self._best_value))):
self._best_value = current_value
self._best_value_step = step
stop_now = (step - self._best_value_step >= self.early_stopping_rounds)
if stop_now:
logging.info("Stopping. Best step: {} with {} = {}."
.format(self._best_value_step,
self.early_stopping_metric, self._best_value))
self._early_stopped = True
return True
return False
# TODO(ptucker): This really reads any tensor, not just vars, and requires the
# ':0' suffix on var_name.
class CaptureVariable(EveryN):
"""Captures a variable's values into a collection.
This monitor is useful for unit testing. You should exercise caution when
using this monitor in production, since it never discards values.
This is an `EveryN` monitor and has consistent semantic for `every_n`
and `first_n`.
"""
def __init__(self, var_name, every_n=100, first_n=1):
"""Initializes a CaptureVariable monitor.
Args:
var_name: `string`. The variable name, including suffix (typically ":0").
every_n: `int`, print every N steps. See `PrintN.`
first_n: `int`, also print the first N steps. See `PrintN.`
"""
super(CaptureVariable, self).__init__(every_n, first_n)
self._var_name = var_name
self._var_values = {}
@property
def values(self):
"""Returns the values captured so far.
Returns:
`dict` mapping `int` step numbers to that values of the variable at the
respective step.
"""
return self._var_values
def every_n_step_begin(self, step):
super(CaptureVariable, self).every_n_step_begin(step)
return [self._var_name]
def every_n_step_end(self, step, outputs):
super(CaptureVariable, self).every_n_step_end(step, outputs)
self._var_values[step] = _extract_output(outputs, self._var_name)
def get_default_monitors(loss_op=None, summary_op=None, save_summary_steps=100,
output_dir=None, summary_writer=None):
"""Returns a default set of typically-used monitors.
Args:
loss_op: `Tensor`, the loss tensor. This will be printed using `PrintTensor`
at the default interval.
summary_op: See `SummarySaver`.
save_summary_steps: See `SummarySaver`.
output_dir: See `SummarySaver`.
summary_writer: See `SummarySaver`.
Returns:
`list` of monitors.
"""
monitors = []
if loss_op is not None:
monitors.append(PrintTensor(tensor_names={"loss": loss_op.name}))
if summary_op is not None:
monitors.append(SummarySaver(summary_op, save_steps=save_summary_steps,
output_dir=output_dir,
summary_writer=summary_writer))
return monitors
class GraphDump(BaseMonitor):
"""Dumps almost all tensors in the graph at every step.
Note, this is very expensive, prefer `PrintTensor` in production.
"""
IGNORE_OPS = ["Const", "Assign", "Identity", "Placeholder",
"RandomUniform", "Cast", "RestoreSlice"]
def __init__(self, ignore_ops=None):
"""Initializes GraphDump monitor.
Args:
ignore_ops: `list` of `string`. Names of ops to ignore.
If None, `GraphDump.IGNORE_OPS` is used.
"""
super(GraphDump, self).__init__()
self._ignore_ops = ignore_ops or GraphDump.IGNORE_OPS
self._data = {}
def begin(self, max_steps=None):
super(GraphDump, self).begin(max_steps=max_steps)
self._tensors = []
graph = ops.get_default_graph()
graph_def = graph.as_graph_def()
for node in graph_def.node:
if node.op in self._ignore_ops:
continue
logging.info("op=%s name=%s.", node.op, node.name)
try:
self._tensors.append(graph.get_tensor_by_name(node.name + ":0"))
except KeyError:
pass
def step_begin(self, step):
super(GraphDump, self).step_begin(step)
return self._tensors
def step_end(self, step, output):
super(GraphDump, self).step_end(step, output)
self._data[step] = output
@property
def data(self):
return self._data
# TODO(ptucker): Handle keys that are in one but not the other.
def compare(self, other_dump, step, atol=1e-06):
"""Compares two `GraphDump` monitors and returns differences.
Args:
other_dump: Another `GraphDump` monitor.
step: `int`, step to compare on.
atol: `float`, absolute tolerance in comparison of floating arrays.
Returns:
Returns tuple:
matched: `list` of keys that matched.
non_matched: `dict` of keys to tuple of 2 mismatched values.
Raises:
ValueError: if a key in `data` is missing from `other_dump` at `step`.
"""
non_matched = {}
matched = []
this_output = self.data[step] if step in self.data else {}
other_output = other_dump.data[step] if step in other_dump.data else {}
for key in this_output:
if not isinstance(key, str) and not isinstance(key, unicode):
continue
if key not in other_output:
raise ValueError("%s missing at step %s.", (key, step))
value1 = _extract_output(this_output, key)
value2 = _extract_output(other_output, key)
if isinstance(value1, str):
continue
if isinstance(value1, np.ndarray):
if not np.allclose(value1, value2, atol=atol):
non_matched[key] = value1 - value2
else:
matched.append(key)
else:
if value1 != value2:
non_matched[key] = (value1, value2)
else:
matched.append(key)
return matched, non_matched
class ExportMonitor(EveryN):
"""Monitor that exports Estimator every N steps."""
# TODO(philstahlfeld): Investigate switching export.export_estimator
# configuration values to **kwargs so that updates to the export_estimator
# function don't have to be reflected here.
@deprecated_arg_values(
"2016-09-23",
"The signature of the input_fn accepted by export is changing to be "
"consistent with what's used by tf.Learn Estimator's train/evaluate. "
"input_fn (and in most cases, input_feature_key) will both become "
"required args.",
input_fn=None)
def __init__(self,
every_n_steps,
export_dir,
input_fn=None,
input_feature_key=None,
exports_to_keep=5,
signature_fn=None,
default_batch_size=1):
"""Initializes ExportMonitor.
Args:
every_n_steps: Run monitor every N steps.
export_dir: str, folder to export.
input_fn: A function that takes no argument and returns a tuple of
(features, targets), where features is a dict of string key to `Tensor`
and targets is a `Tensor` that's currently not used (and so can be
`None`).
input_feature_key: String key into the features dict returned by
`input_fn` that corresponds to the raw `Example` strings `Tensor` that
the exported model will take as input. Can only be `None` if you're
using a custom `signature_fn` that does not use the first arg
(examples).
exports_to_keep: int, number of exports to keep.
signature_fn: Function that returns a default signature and a named
signature map, given `Tensor` of `Example` strings, `dict` of `Tensor`s
for features and `dict` of `Tensor`s for predictions.
default_batch_size: Default batch size of the `Example` placeholder.
Raises:
ValueError: If `input_fn` and `input_feature_key` are not both defined or
are not both `None`.
"""
super(ExportMonitor, self).__init__(every_n_steps=every_n_steps)
self._export_dir = export_dir
self._input_fn = input_fn
self._input_feature_key = input_feature_key
self._use_deprecated_input_fn = input_fn is None
self._exports_to_keep = exports_to_keep
self._signature_fn = signature_fn
self._default_batch_size = default_batch_size
self._last_export_dir = None
@property
def export_dir(self):
return self._export_dir
@property
def exports_to_keep(self):
return self._exports_to_keep
@property
def signature_fn(self):
return self._signature_fn
@property
def last_export_dir(self):
"""Returns the directory containing the last completed export.
Returns:
The string path to the exported directory. NB: this functionality was
added on 2016/09/25; clients that depend on the return value may need
to handle the case where this function returns None because the
estimator being fitted does not yet return a value during export.
"""
return self._last_export_dir
def every_n_step_end(self, step, outputs):
super(ExportMonitor, self).every_n_step_end(step, outputs)
try:
self._last_export_dir = self._estimator.export(
self.export_dir,
exports_to_keep=self.exports_to_keep,
signature_fn=self.signature_fn,
input_fn=self._input_fn,
default_batch_size=self._default_batch_size,
input_feature_key=self._input_feature_key,
use_deprecated_input_fn=self._use_deprecated_input_fn)
except RuntimeError:
# Currently we are not syncronized with saving checkpoints, which leads to
# runtime errors when we are calling export on the same global step.
# Exports depend on saved checkpoints for constructing the graph and
# getting the global step from the graph instance saved in the checkpoint.
# If the checkpoint is stale with respect to current step, the global step
# is taken to be the last saved checkpoint's global step and exporter
# doesn't export the same checkpoint again with the following error.
logging.info("Skipping exporting because the existing checkpoint has "
"already been exported. "
"Consider exporting less frequently.")
def end(self, session=None):
super(ExportMonitor, self).end(session=session)
latest_path = saver_lib.latest_checkpoint(self._estimator.model_dir)
if latest_path is None:
logging.info("Skipping export at the end since model has not been saved "
"yet.")
return
try:
self._last_export_dir = self._estimator.export(
self.export_dir,
exports_to_keep=self.exports_to_keep,
signature_fn=self.signature_fn,
input_fn=self._input_fn,
default_batch_size=self._default_batch_size,
input_feature_key=self._input_feature_key,
use_deprecated_input_fn=self._use_deprecated_input_fn)
except RuntimeError:
logging.info("Skipping exporting for the same step.")
class CheckpointSaver(BaseMonitor):
"""Saves checkpoints every N steps."""
def __init__(self,
checkpoint_dir,
save_secs=None,
save_steps=None,
saver=None,
checkpoint_basename="model.ckpt",
scaffold=None):
"""Initialize CheckpointSaver monitor.
Args:
checkpoint_dir: `str`, base directory for the checkpoint files.
save_secs: `int`, save every N secs.
save_steps: `int`, save every N steps.
saver: `Saver` object, used for saving.
checkpoint_basename: `str`, base name for the checkpoint files.
scaffold: `Scaffold`, use to get saver object.
Raises:
ValueError: If both `save_steps` and `save_secs` are not `None`.
ValueError: If both `save_steps` and `save_secs` are `None`.
"""
logging.info("Create CheckpointSaver.")
super(CheckpointSaver, self).__init__()
self._saver = saver
self._summary_writer = SummaryWriterCache.get(checkpoint_dir)
self._save_path = os.path.join(checkpoint_dir, checkpoint_basename)
self._scaffold = scaffold
self._save_secs = save_secs
self._save_steps = save_steps
self._last_saved_time = None
self._last_begin_step = None
self._last_saved_step = None
if save_steps is None and save_secs is None:
raise ValueError("Either save_steps or save_secs should be provided")
if (save_steps is not None) and (save_secs is not None):
raise ValueError("Can not provide both save_steps and save_secs.")
def begin(self, max_steps=None):
super(CheckpointSaver, self).begin(max_steps)
self._last_saved_time = None
self._last_begin_step = None
self._last_saved_step = None
def step_begin(self, step):
super(CheckpointSaver, self).step_begin(step)
self._last_begin_step = step
def post_step(self, step, session):
super(CheckpointSaver, self).post_step(step, session)
if self._last_saved_time is None:
self._save(step, session)
if self._save_steps is not None:
if step >= self._last_saved_step + self._save_steps:
self._save(step, session)
if self._save_secs is not None:
if time.time() >= self._last_saved_time + self._save_secs:
self._save(step, session)
def end(self, session=None):
super(CheckpointSaver, self).end(session)
self._save(self._last_begin_step, session)
def _save(self, step, session):
"""Saves the latest checkpoint."""
if step == self._last_saved_step:
return
logging.info("Saving checkpoints for %d into %s.", step, self._save_path)
self._last_saved_time = time.time()
self._last_saved_step = step
if self._saver is None:
self._scaffold.saver.save(session, self._save_path, global_step=step)
else:
self._saver.save(session, self._save_path, global_step=step)
self._summary_writer.add_session_log(
SessionLog(
status=SessionLog.CHECKPOINT, checkpoint_path=self._save_path),
step)
class StepCounter(EveryN):
"""Steps per second monitor."""
def __init__(self, every_n_steps=100, output_dir=None,
summary_writer=None):
super(StepCounter, self).__init__(every_n_steps=every_n_steps)
self._summary_tag = "global_step/sec"
self._last_reported_step = None
self._last_reported_time = None
self._summary_writer = summary_writer
if summary_writer is None and output_dir:
self._summary_writer = SummaryWriterCache.get(output_dir)
def set_estimator(self, estimator):
super(StepCounter, self).set_estimator(estimator)
if self._summary_writer is None:
self._summary_writer = SummaryWriterCache.get(estimator.model_dir)
def every_n_step_end(self, current_step, outputs):
current_time = time.time()
if self._last_reported_time is not None and self._summary_writer:
added_steps = current_step - self._last_reported_step
elapsed_time = current_time - self._last_reported_time
steps_per_sec = added_steps / elapsed_time
summary = Summary(value=[Summary.Value(tag=self._summary_tag,
simple_value=steps_per_sec)])
self._summary_writer.add_summary(summary, current_step)
self._last_reported_step = current_step
self._last_reported_time = current_time
class NanLossDuringTrainingError(RuntimeError):
def __str__(self):
return "NaN loss during training."
class NanLoss(EveryN):
"""NaN Loss monitor.
Monitors loss and stops training if loss is NaN.
Can either fail with exception or just stop training.
"""
def __init__(self, loss_tensor, every_n_steps=100, fail_on_nan_loss=True):
"""Initializes NanLoss monitor.
Args:
loss_tensor: `Tensor`, the loss tensor.
every_n_steps: `int`, run check every this many steps.
fail_on_nan_loss: `bool`, whether to raise exception when loss is NaN.
"""
super(NanLoss, self).__init__(every_n_steps=every_n_steps)
self._loss_tensor = loss_tensor
self._fail_on_nan_loss = fail_on_nan_loss
def every_n_step_begin(self, step):
super(NanLoss, self).every_n_step_begin(step)
return [self._loss_tensor]
def every_n_step_end(self, step, outputs):
super(NanLoss, self).every_n_step_end(step, outputs)
if np.isnan(_extract_output(outputs, self._loss_tensor)):
failure_message = "Model diverged with loss = NaN."
if self._fail_on_nan_loss:
logging.error(failure_message)
raise NanLossDuringTrainingError
else:
logging.warning(failure_message)
# We don't raise an error but we return "should stop" so we stop, but
# without an exception.
return True
class RunHookAdapterForMonitors(session_run_hook.SessionRunHook):
"""Wraps monitors into a SessionRunHook."""
def __init__(self, monitors):
self._monitors = monitors
def begin(self):
self._last_step = None
self._global_step_tensor = contrib_variables.get_global_step()
for m in self._monitors:
m.begin(max_steps=None)
def before_run(self, run_context):
if self._last_step is None:
self._last_step = run_context.session.run(self._global_step_tensor) + 1
request = {self._global_step_tensor: self._global_step_tensor}
monitor_fetches = []
for m in self._monitors:
monitor_requests = m.step_begin(self._last_step)
if monitor_requests:
if not isinstance(monitor_requests, list):
raise ValueError("Monitor.step_begin should return a list.")
monitor_fetches.extend(monitor_requests)
if monitor_fetches:
request["monitors"] = dict(
zip(monitor_fetches, [_as_graph_element(f) for f in monitor_fetches]))
return session_run_hook.SessionRunArgs(request)
def after_run(self, run_context, run_values):
result = run_values.results[
"monitors"] if "monitors" in run_values.results else {}
for m in self._monitors:
induce_stop = m.step_end(self._last_step, result)
if induce_stop:
run_context.request_stop()
for m in self._monitors:
m.post_step(self._last_step, run_context.session)
self._last_step = run_values.results[self._global_step_tensor] + 1
def end(self, session):
self._last_step = None
for m in self._monitors:
if "session" in inspect.getargspec(m.end).args:
m.end(session=session)
else:
m.end()
def _as_graph_element(obj):
"""Retrieves Graph element."""
graph = ops.get_default_graph()
if not isinstance(obj, six.string_types):
if not hasattr(obj, "graph") or obj.graph != graph:
raise ValueError("Passed %s should have graph attribute that is equal "
"to current graph %s." % (obj, graph))
return obj
if ":" in obj:
element = graph.as_graph_element(obj)
else:
element = graph.as_graph_element(obj + ":0")
# Check that there is no :1 (e.g. it's single output).
try:
graph.as_graph_element(obj + ":1")
except (KeyError, ValueError):
pass
else:
raise ValueError("Name %s is ambiguous, "
"as this `Operation` has multiple outputs "
"(at least 2)." % obj)
return element
| [
"tensorflow.python.platform.tf_logging.warning",
"tensorflow.python.training.saver.latest_checkpoint",
"tensorflow.contrib.framework.python.ops.variables.get_global_step",
"tensorflow.contrib.learn.python.learn.summary_writer_cache.SummaryWriterCache.get",
"tensorflow.contrib.learn.python.learn.session_run_hook.SessionRunArgs",
"tensorflow.python.framework.ops.get_collection",
"tensorflow.python.training.summary_io.SummaryWriter",
"tensorflow.python.platform.tf_logging.debug",
"tensorflow.python.platform.tf_logging.error",
"numpy.allclose",
"tensorflow.python.platform.tf_logging.info",
"tensorflow.core.framework.summary_pb2.Summary.Value",
"tensorflow.python.framework.ops.get_default_graph",
"tensorflow.core.util.event_pb2.SessionLog",
"tensorflow.contrib.framework.deprecated_arg_values"
] | tensorflow/contrib/learn/python/learn/monitors.py | [(903, 'tensorflow.contrib.framework.deprecated_arg_values', 'deprecated_arg_values', (['"""2016-09-23"""', '"""The signature of the input_fn accepted by export is changing to be consistent with what\'s used by tf.Learn Estimator\'s train/evaluate. input_fn (and in most cases, input_feature_key) will both become required args."""'], {'input_fn': 'None'}), False, 'from tensorflow.contrib.framework import deprecated_arg_values\n'), (1232, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (503, 'six.iteritems', 'six.iteritems', (['self._tensor_names'], {}), False, 'import six\n'), (533, 'tensorflow.python.framework.ops.get_collection', 'ops.get_collection', (['ops.GraphKeys.TRAINABLE_VARIABLES'], {'scope': 'self._scope'}), False, 'from tensorflow.python.framework import ops\n'), (543, 'six.iteritems', 'six.iteritems', (['self._names'], {}), False, 'import six\n'), (696, 'tensorflow.python.training.saver.latest_checkpoint', 'saver_lib.latest_checkpoint', (['self._estimator.model_dir'], {}), True, 'from tensorflow.python.training import saver as saver_lib\n'), (831, 'tensorflow.python.framework.ops.get_default_graph', 'ops.get_default_graph', ([], {}), False, 'from tensorflow.python.framework import ops\n'), (1001, 'tensorflow.python.training.saver.latest_checkpoint', 'saver_lib.latest_checkpoint', (['self._estimator.model_dir'], {}), True, 'from tensorflow.python.training import saver as saver_lib\n'), (1043, 'tensorflow.python.platform.tf_logging.info', 'logging.info', (['"""Create CheckpointSaver."""'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (1046, 'tensorflow.contrib.learn.python.learn.summary_writer_cache.SummaryWriterCache.get', 'SummaryWriterCache.get', (['checkpoint_dir'], {}), False, 'from tensorflow.contrib.learn.python.learn.summary_writer_cache import SummaryWriterCache\n'), (1047, 'os.path.join', 'os.path.join', (['checkpoint_dir', 'checkpoint_basename'], {}), False, 'import os\n'), (1091, 'tensorflow.python.platform.tf_logging.info', 'logging.info', (['"""Saving checkpoints for %d into %s."""', 'step', 'self._save_path'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (1092, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (1123, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (1186, 'tensorflow.contrib.framework.python.ops.variables.get_global_step', 'contrib_variables.get_global_step', ([], {}), True, 'from tensorflow.contrib.framework.python.ops import variables as contrib_variables\n'), (1206, 'tensorflow.contrib.learn.python.learn.session_run_hook.SessionRunArgs', 'session_run_hook.SessionRunArgs', (['request'], {}), False, 'from tensorflow.contrib.learn.python.learn import session_run_hook\n'), (577, 'tensorflow.python.training.summary_io.SummaryWriter', 'summary_io.SummaryWriter', (['output_dir'], {}), False, 'from tensorflow.python.training import summary_io\n'), (585, 'tensorflow.python.training.summary_io.SummaryWriter', 'summary_io.SummaryWriter', (['estimator.model_dir'], {}), False, 'from tensorflow.python.training import summary_io\n'), (698, 'tensorflow.python.platform.tf_logging.debug', 'logging.debug', (['"""Skipping evaluation since model has not been saved yet at step %d."""', 'step'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (702, 'tensorflow.python.platform.tf_logging.debug', 'logging.debug', (['"""Skipping evaluation due to same checkpoint %s for step %d as for step %d."""', 'latest_path', 'step', 'self._latest_path_step'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (836, 'tensorflow.python.platform.tf_logging.info', 'logging.info', (['"""op=%s name=%s."""', 'node.op', 'node.name'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (1003, 'tensorflow.python.platform.tf_logging.info', 'logging.info', (['"""Skipping export at the end since model has not been saved yet."""'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (1099, 'tensorflow.core.util.event_pb2.SessionLog', 'SessionLog', ([], {'status': 'SessionLog.CHECKPOINT', 'checkpoint_path': 'self._save_path'}), False, 'from tensorflow.core.util.event_pb2 import SessionLog\n'), (1115, 'tensorflow.contrib.learn.python.learn.summary_writer_cache.SummaryWriterCache.get', 'SummaryWriterCache.get', (['output_dir'], {}), False, 'from tensorflow.contrib.learn.python.learn.summary_writer_cache import SummaryWriterCache\n'), (1120, 'tensorflow.contrib.learn.python.learn.summary_writer_cache.SummaryWriterCache.get', 'SummaryWriterCache.get', (['estimator.model_dir'], {}), False, 'from tensorflow.contrib.learn.python.learn.summary_writer_cache import SummaryWriterCache\n'), (995, 'tensorflow.python.platform.tf_logging.info', 'logging.info', (['"""Skipping exporting because the existing checkpoint has already been exported. Consider exporting less frequently."""'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (1016, 'tensorflow.python.platform.tf_logging.info', 'logging.info', (['"""Skipping exporting for the same step."""'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (1080, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (1169, 'tensorflow.python.platform.tf_logging.error', 'logging.error', (['failure_message'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (1172, 'tensorflow.python.platform.tf_logging.warning', 'logging.warning', (['failure_message'], {}), True, 'from tensorflow.python.platform import tf_logging as logging\n'), (885, 'numpy.allclose', 'np.allclose', (['value1', 'value2'], {'atol': 'atol'}), True, 'import numpy as np\n'), (1224, 'inspect.getargspec', 'inspect.getargspec', (['m.end'], {}), False, 'import inspect\n'), (1128, 'tensorflow.core.framework.summary_pb2.Summary.Value', 'Summary.Value', ([], {'tag': 'self._summary_tag', 'simple_value': 'steps_per_sec'}), False, 'from tensorflow.core.framework.summary_pb2 import Summary\n')] |
gmum/cwae | 50592903c321de25f339f3b00cbd2143741e5037 | import tensorflow as tf
import math as m
from rec_errors import euclidean_norm_squared
def silverman_rule_of_thumb(N: int):
return tf.pow(4/(3*N), 0.4)
def cw_1d(X, y=None):
def N0(mean, variance):
return 1.0/(tf.sqrt(2.0 * m.pi * variance)) * tf.exp((-(mean**2))/(2*variance))
N = tf.cast(tf.shape(X)[0], tf.float32)
if y is None:
y = silverman_rule_of_thumb(N)
A = tf.subtract(tf.expand_dims(X, 0), tf.expand_dims(X, 1))
return (1.0/(N*N)) * tf.reduce_sum(N0(A, 2*y)) + N0(0.0, 2.0 + 2*y) - (2/N) * tf.reduce_sum(N0(X, 1.0 + 2*y))
def cw_2d(X, y=None):
def __phi(x):
def __phi_f(s):
t = s/7.5
return tf.exp(-s/2) * (1 + 3.5156229*t**2 + 3.0899424*t**4 + 1.2067492*t**6 + 0.2659732*t**8
+ 0.0360768*t**10 + 0.0045813*t**12)
def __phi_g(s):
t = s/7.5
return tf.sqrt(2/s) * (0.39894228 + 0.01328592*t**(-1) + 0.00225319*t**(-2) - 0.00157565*t**(-3)
+ 0.0091628*t**(-4) - 0.02057706*t**(-5) + 0.02635537*t**(-6) - 0.01647633*t**(-7)
+ 0.00392377*t**(-8))
a = 7.5
return __phi_f(tf.minimum(x, a)) - __phi_f(a) + __phi_g(tf.maximum(x, a))
N = tf.cast(tf.shape(X)[0], tf.float32)
if y is None:
y = silverman_rule_of_thumb(N)
A = 1/(N*N*tf.sqrt(y))
B = 2.0/(N*tf.sqrt(y+0.5))
A1 = euclidean_norm_squared(tf.subtract(tf.expand_dims(X, 0), tf.expand_dims(X, 1)), axis=2)/(4*y)
B1 = euclidean_norm_squared(X, axis=1)/(2+4*y)
return 1/tf.sqrt(1+y) + A*tf.reduce_sum(__phi(A1)) - B*tf.reduce_sum(__phi(B1))
def cw(X, y=None):
D = tf.cast(tf.shape(X)[1], tf.float32)
N = tf.cast(tf.shape(X)[0], tf.float32)
if y is None:
y = silverman_rule_of_thumb(N)
K = 1/(2*D-3)
A1 = euclidean_norm_squared(tf.subtract(tf.expand_dims(X, 0), tf.expand_dims(X, 1)), axis=2)
A = (1/(N**2)) * tf.reduce_sum((1/tf.sqrt(y + K*A1)))
B1 = euclidean_norm_squared(X, axis=1)
B = (2/N)*tf.reduce_sum((1/tf.sqrt(y + 0.5 + K*B1)))
return (1/tf.sqrt(1+y)) + A - B
def cw_choose(z_dim: int):
if z_dim == 1:
return cw_1d
elif z_dim == 2:
return cw_2d
elif z_dim >= 20:
return cw
else:
raise ValueError('Not defined for this latent dimension')
def cw_sampling(X, y=None):
def phi_sampling(s, D):
return tf.pow(1.0 + 4.0*s/(2.0*D-3), -0.5)
D = tf.cast(tf.shape(X)[1], tf.float32)
N = tf.cast(tf.shape(X)[0], tf.float32)
D_int = tf.cast(D, tf.int32)
N_int = tf.cast(N, tf.int32)
if y is None:
y = silverman_rule_of_thumb(N)
YDistr = tf.contrib.distributions.MultivariateNormalDiag(loc=tf.zeros(D_int, tf.float32),
scale_diag=tf.ones(D_int, tf.float32))
Y = YDistr.sample(N_int)
T = 1.0/(2.0*N*tf.sqrt(m.pi*y))
A0 = euclidean_norm_squared(tf.subtract(tf.expand_dims(X, 0), tf.expand_dims(X, 1)), axis=2)
A = tf.reduce_sum(phi_sampling(A0/(4*y), D))
B0 = euclidean_norm_squared(tf.subtract(tf.expand_dims(Y, 0), tf.expand_dims(Y, 1)), axis=2)
B = tf.reduce_sum(phi_sampling(B0/(4*y), D))
C0 = euclidean_norm_squared(tf.subtract(tf.expand_dims(X, 0), tf.expand_dims(Y, 1)), axis=2)
C = tf.reduce_sum(phi_sampling(C0/(4*y), D))
return T*(A + B - 2*C)
| [
"tensorflow.shape",
"tensorflow.pow",
"tensorflow.zeros",
"tensorflow.maximum",
"tensorflow.cast",
"tensorflow.minimum",
"tensorflow.exp",
"tensorflow.expand_dims",
"tensorflow.ones",
"tensorflow.sqrt"
] | src/cw.py | [(7, 'tensorflow.pow', 'tf.pow', (['(4 / (3 * N))', '(0.4)'], {}), True, 'import tensorflow as tf\n'), (62, 'rec_errors.euclidean_norm_squared', 'euclidean_norm_squared', (['X'], {'axis': '(1)'}), False, 'from rec_errors import euclidean_norm_squared\n'), (85, 'tensorflow.cast', 'tf.cast', (['D', 'tf.int32'], {}), True, 'import tensorflow as tf\n'), (86, 'tensorflow.cast', 'tf.cast', (['N', 'tf.int32'], {}), True, 'import tensorflow as tf\n'), (19, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(0)'], {}), True, 'import tensorflow as tf\n'), (19, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(1)'], {}), True, 'import tensorflow as tf\n'), (47, 'rec_errors.euclidean_norm_squared', 'euclidean_norm_squared', (['X'], {'axis': '(1)'}), False, 'from rec_errors import euclidean_norm_squared\n'), (81, 'tensorflow.pow', 'tf.pow', (['(1.0 + 4.0 * s / (2.0 * D - 3))', '(-0.5)'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.exp', 'tf.exp', (['(-mean ** 2 / (2 * variance))'], {}), True, 'import tensorflow as tf\n'), (15, 'tensorflow.shape', 'tf.shape', (['X'], {}), True, 'import tensorflow as tf\n'), (39, 'tensorflow.shape', 'tf.shape', (['X'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.sqrt', 'tf.sqrt', (['y'], {}), True, 'import tensorflow as tf\n'), (44, 'tensorflow.sqrt', 'tf.sqrt', (['(y + 0.5)'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.shape', 'tf.shape', (['X'], {}), True, 'import tensorflow as tf\n'), (53, 'tensorflow.shape', 'tf.shape', (['X'], {}), True, 'import tensorflow as tf\n'), (59, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(0)'], {}), True, 'import tensorflow as tf\n'), (59, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(1)'], {}), True, 'import tensorflow as tf\n'), (83, 'tensorflow.shape', 'tf.shape', (['X'], {}), True, 'import tensorflow as tf\n'), (84, 'tensorflow.shape', 'tf.shape', (['X'], {}), True, 'import tensorflow as tf\n'), (90, 'tensorflow.zeros', 'tf.zeros', (['D_int', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (91, 'tensorflow.ones', 'tf.ones', (['D_int', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (93, 'tensorflow.sqrt', 'tf.sqrt', (['(m.pi * y)'], {}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(0)'], {}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(1)'], {}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.expand_dims', 'tf.expand_dims', (['Y', '(0)'], {}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.expand_dims', 'tf.expand_dims', (['Y', '(1)'], {}), True, 'import tensorflow as tf\n'), (101, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(0)'], {}), True, 'import tensorflow as tf\n'), (101, 'tensorflow.expand_dims', 'tf.expand_dims', (['Y', '(1)'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.sqrt', 'tf.sqrt', (['(2.0 * m.pi * variance)'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.exp', 'tf.exp', (['(-s / 2)'], {}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.sqrt', 'tf.sqrt', (['(2 / s)'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.maximum', 'tf.maximum', (['x', 'a'], {}), True, 'import tensorflow as tf\n'), (46, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(0)'], {}), True, 'import tensorflow as tf\n'), (46, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(1)'], {}), True, 'import tensorflow as tf\n'), (48, 'tensorflow.sqrt', 'tf.sqrt', (['(1 + y)'], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.sqrt', 'tf.sqrt', (['(y + K * A1)'], {}), True, 'import tensorflow as tf\n'), (63, 'tensorflow.sqrt', 'tf.sqrt', (['(y + 0.5 + K * B1)'], {}), True, 'import tensorflow as tf\n'), (65, 'tensorflow.sqrt', 'tf.sqrt', (['(1 + y)'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.minimum', 'tf.minimum', (['x', 'a'], {}), True, 'import tensorflow as tf\n')] |
nonu116/HDR-GAN | 239f68dd07f1970e0317515a313b69a9c3914f74 | import os
import tensorflow as tf
from tensorkit.log import logger, Color
class Restore(object):
def __init__(self):
self._var_list = None
self._restore_saver = None
self._restore_optimistic = False
self.restore_ckpt_file = None
self._inited = False
def init(self, var_list=None, ckpt_dir=None, ckpt_file=None, optimistic=False):
"""
:param var_list: vars for restore
:param ckpt_dir: prefix of model files.
:param ckpt_file: exact name of model file, priority is higher than `ckpt_dir`
:param optimistic: only restore weights of same names with model.
:return:
"""
assert (var_list is None) or (len(var_list) > 0), 'invalid var_list: {}'.format(var_list)
assert ckpt_dir is not None or ckpt_file is not None, 'ckpt_dir and ckpt_file are both None'
self._var_list = var_list
self._restore_optimistic = optimistic
if ckpt_file is None:
assert os.path.exists(ckpt_dir), 'invalid checkpoint dir: %s' % ckpt_dir
# get ckpt file.
self.restore_ckpt_file = tf.train.latest_checkpoint(os.path.dirname(ckpt_dir + os.sep))
else:
self.restore_ckpt_file = ckpt_file
self._inited = True
return self
def restore(self, sess):
assert self._inited, 'make sure init() before restore()'
if self._restore_vars(sess):
logger.info('- succeed restore variables from: {}'.format(self.restore_ckpt_file))
return True
return False
def _restore_vars(self, sess):
"""
:param sess:
:return: boolean for successful or not
"""
if not self._restore_optimistic:
if self.restore_ckpt_file is None:
logger.warn(
Color.yellow('No checkpoint file for restore vars, checkpoint file is None', bold=True))
return False
self._restore_saver = tf.train.Saver(self._var_list, name='tk_restore')
self._restore_saver.restore(sess, self.restore_ckpt_file)
return True
else:
return self._optimistic_restore_model(sess)
def _optimistic_restore_model(self, sess):
"""
restore weights of same names with model.
:param sess:
:return:
"""
if self.restore_ckpt_file is None:
logger.warn(Color.yellow('No ckpt file for restore vars, ckpt file is None'))
return False
reader = tf.train.NewCheckpointReader(self.restore_ckpt_file)
saved_shapes = reader.get_variable_to_shape_map()
if self._var_list is None:
restore_key2vars = {var.name.split(':')[0]: var for var in tf.global_variables()}
elif isinstance(self._var_list, list):
restore_key2vars = {var.name.split(':')[0]: var for var in self._var_list}
elif isinstance(self._var_list, dict):
restore_key2vars = self._var_list
else:
raise RuntimeError('type error {}'.format(self._var_list))
assert len(restore_key2vars) > 0
restore_key2vars = sorted([(k, v) for k, v in restore_key2vars.items() if k in saved_shapes])
msg = []
var_list = dict()
with tf.variable_scope('', reuse=True):
for key, var in restore_key2vars:
var_shape = var.get_shape().as_list()
if var_shape == saved_shapes[key]:
var_list[key] = var
var_name = var.name[:var.name.index(':')]
msg.append('- restoring variable: {}'.format(var_name)
if var_name == key else
'- restoring variable {} from {}'.format(var_name, key))
else:
msg.append(Color.yellow(
'- variable({}) with inconsistent shape: {}(graph) != {}(ckpt)'.format(
key, var_shape, saved_shapes[key])
))
if len(var_list) != 0:
msg += ['- total variable count: {}'.format(len(var_list))]
logger.info('\n'.join(msg))
saver = tf.train.Saver(var_list, name='tk_restore')
saver.restore(sess, self.restore_ckpt_file)
return True
else:
logger.warn(Color.yellow('No vars need to restore from file: {}'.format(self.restore_ckpt_file)))
return False
def __str__(self):
content = 'RESTORE_OPTIMISTIC: %s' \
'\nRESTORE_CHECKPOINT_FILE: %s' % (self._restore_optimistic, self.restore_ckpt_file)
return content
| [
"tensorflow.train.Saver",
"tensorflow.train.NewCheckpointReader",
"tensorflow.variable_scope",
"tensorflow.global_variables"
] | tensorkit/restore.py | [(69, 'tensorflow.train.NewCheckpointReader', 'tf.train.NewCheckpointReader', (['self.restore_ckpt_file'], {}), True, 'import tensorflow as tf\n'), (29, 'os.path.exists', 'os.path.exists', (['ckpt_dir'], {}), False, 'import os\n'), (54, 'tensorflow.train.Saver', 'tf.train.Saver', (['self._var_list'], {'name': '"""tk_restore"""'}), True, 'import tensorflow as tf\n'), (83, 'tensorflow.variable_scope', 'tf.variable_scope', (['""""""'], {'reuse': '(True)'}), True, 'import tensorflow as tf\n'), (100, 'tensorflow.train.Saver', 'tf.train.Saver', (['var_list'], {'name': '"""tk_restore"""'}), True, 'import tensorflow as tf\n'), (31, 'os.path.dirname', 'os.path.dirname', (['(ckpt_dir + os.sep)'], {}), False, 'import os\n'), (67, 'tensorkit.log.Color.yellow', 'Color.yellow', (['"""No ckpt file for restore vars, ckpt file is None"""'], {}), False, 'from tensorkit.log import logger, Color\n'), (52, 'tensorkit.log.Color.yellow', 'Color.yellow', (['"""No checkpoint file for restore vars, checkpoint file is None"""'], {'bold': '(True)'}), False, 'from tensorkit.log import logger, Color\n'), (72, 'tensorflow.global_variables', 'tf.global_variables', ([], {}), True, 'import tensorflow as tf\n')] |
wyyy04/scene-graph-TF-release | 4c9e3c6a5cb0e6a241a92dc9b786f74e69ca35c4 | import tensorflow as tf
def exp_average_summary(ops, dep_ops, decay=0.9, name='avg', scope_pfix='',
raw_pfix=' (raw)', avg_pfix=' (avg)'):
averages = tf.train.ExponentialMovingAverage(decay, name=name)
averages_op = averages.apply(ops)
for op in ops:
tf.scalar_summary(scope_pfix + op.name + raw_pfix, op)
tf.scalar_summary(scope_pfix + op.name + avg_pfix,
averages.average(op))
with tf.control_dependencies([averages_op]):
for i, dep_op in enumerate(dep_ops):
dep_ops[i] = tf.identity(dep_op, name=dep_op.name.split(':')[0])
return dep_ops
def exp_average(vec, curr_avg, decay=0.9):
vec_avg = tf.reduce_mean(vec, 0)
avg = tf.assign(curr_avg, curr_avg * decay + vec_avg * (1-decay))
return avg
def gather_vec_pairs(vecs, gather_inds):
"""
gather obj-subj feature pairs
"""
vec_pairs = tf.gather(vecs, gather_inds)
vec_len = int(vec_pairs.get_shape()[2]) * 2
vec_pairs = tf.reshape(vec_pairs, [-1, vec_len])
return vec_pairs
def pad_and_gather(vecs, mask_inds, pad=None):
"""
pad a vector with a zero row and gather with input inds
"""
if pad is None:
pad = tf.expand_dims(tf.zeros_like(vecs[0]), 0)
else:
pad = tf.expand_dims(pad, 0)
vecs_padded = tf.concat(0, [vecs, pad])
# flatten mask and edges
vecs_gathered = tf.gather(vecs_padded, mask_inds)
return vecs_gathered
def padded_segment_reduce(vecs, segment_inds, num_segments, reduction_mode):
"""
Reduce the vecs with segment_inds and reduction_mode
Input:
vecs: A Tensor of shape (batch_size, vec_dim)
segment_inds: A Tensor containing the segment index of each
vec row, should agree with vecs in shape[0]
Output:
A tensor of shape (vec_dim)
"""
if reduction_mode == 'max':
print('USING MAX POOLING FOR REDUCTION!')
vecs_reduced = tf.segment_max(vecs, segment_inds)
elif reduction_mode == 'mean':
print('USING AVG POOLING FOR REDUCTION!')
vecs_reduced = tf.segment_mean(vecs, segment_inds)
vecs_reduced.set_shape([num_segments, vecs.get_shape()[1]])
return vecs_reduced
| [
"tensorflow.concat",
"tensorflow.control_dependencies",
"tensorflow.reduce_mean",
"tensorflow.segment_mean",
"tensorflow.assign",
"tensorflow.reshape",
"tensorflow.scalar_summary",
"tensorflow.expand_dims",
"tensorflow.gather",
"tensorflow.train.ExponentialMovingAverage",
"tensorflow.zeros_like",
"tensorflow.segment_max"
] | lib/networks/net_utils.py | [(5, 'tensorflow.train.ExponentialMovingAverage', 'tf.train.ExponentialMovingAverage', (['decay'], {'name': 'name'}), True, 'import tensorflow as tf\n'), (20, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['vec', '(0)'], {}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.assign', 'tf.assign', (['curr_avg', '(curr_avg * decay + vec_avg * (1 - decay))'], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.gather', 'tf.gather', (['vecs', 'gather_inds'], {}), True, 'import tensorflow as tf\n'), (30, 'tensorflow.reshape', 'tf.reshape', (['vec_pairs', '[-1, vec_len]'], {}), True, 'import tensorflow as tf\n'), (41, 'tensorflow.concat', 'tf.concat', (['(0)', '[vecs, pad]'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.gather', 'tf.gather', (['vecs_padded', 'mask_inds'], {}), True, 'import tensorflow as tf\n'), (9, 'tensorflow.scalar_summary', 'tf.scalar_summary', (['(scope_pfix + op.name + raw_pfix)', 'op'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.control_dependencies', 'tf.control_dependencies', (['[averages_op]'], {}), True, 'import tensorflow as tf\n'), (40, 'tensorflow.expand_dims', 'tf.expand_dims', (['pad', '(0)'], {}), True, 'import tensorflow as tf\n'), (58, 'tensorflow.segment_max', 'tf.segment_max', (['vecs', 'segment_inds'], {}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.zeros_like', 'tf.zeros_like', (['vecs[0]'], {}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.segment_mean', 'tf.segment_mean', (['vecs', 'segment_inds'], {}), True, 'import tensorflow as tf\n')] |
jiajunhua/asyml-texar | 22d7b8eea5bd43eef68b615ba87b2e8220bafdf8 | # Copyright 2018 The Texar Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Global context manager that handles train/infer mode, etc
"""
from __future__ import absolute_import
from __future__ import print_function
from __future__ import division
import tensorflow as tf
__all__ = [
"global_mode",
"global_mode_train",
"global_mode_eval",
"global_mode_predict",
"valid_modes"
]
_GLOBAL_MODE_KEY = "GLOBAL_MODE"
def global_mode():
"""Returns the Tensor of global mode.
This is a placeholder with default value of
:tf_main:`tf.estimator.ModeKeys.TRAIN <estimator/ModeKeys>`.
Example:
.. code-block:: python
mode = session.run(global_mode())
# mode == tf.estimator.ModeKeys.TRAIN
mode = session.run(
global_mode(),
feed_dict={tf.global_mode(): tf.estimator.ModeKeys.PREDICT})
# mode == tf.estimator.ModeKeys.PREDICT
"""
mode = tf.get_collection_ref(_GLOBAL_MODE_KEY)
if len(mode) < 1:
# mode_tensor = tf.placeholder(tf.string, name="global_mode")
mode_tensor = tf.placeholder_with_default(
input=tf.estimator.ModeKeys.TRAIN,
shape=(),
name="global_mode")
# mode_tensor = tf.constant(
# value=tf.estimator.ModeKeys.TRAIN,
# dtype=tf.string,
# name="global_mode")
mode.append(mode_tensor)
return mode[0]
def global_mode_train():
"""Returns a bool Tensor indicating whether the global mode is TRAIN.
Example:
.. code-block:: python
is_train = session.run(global_mode_train())
# is_train == True
is_train = session.run(
global_mode_train()
feed_dict={tf.global_mode(): tf.estimator.ModeKeys.PREDICT})
# is_train == False
"""
mode = global_mode()
return tf.equal(mode, tf.estimator.ModeKeys.TRAIN)
def global_mode_eval():
"""Returns a bool Tensor indicating whether the global mode is EVAL.
"""
mode = global_mode()
return tf.equal(mode, tf.estimator.ModeKeys.EVAL)
def global_mode_predict():
"""Returns a bool Tensor indicating whether the global mode is PREDICT.
"""
mode = global_mode()
return tf.equal(mode, tf.estimator.ModeKeys.PREDICT)
def valid_modes():
"""Returns a set of possible values of mode.
"""
return {tf.estimator.ModeKeys.TRAIN,
tf.estimator.ModeKeys.EVAL,
tf.estimator.ModeKeys.PREDICT}
| [
"tensorflow.get_collection_ref",
"tensorflow.placeholder_with_default",
"tensorflow.equal"
] | texar/tf/context.py | [(53, 'tensorflow.get_collection_ref', 'tf.get_collection_ref', (['_GLOBAL_MODE_KEY'], {}), True, 'import tensorflow as tf\n'), (84, 'tensorflow.equal', 'tf.equal', (['mode', 'tf.estimator.ModeKeys.TRAIN'], {}), True, 'import tensorflow as tf\n'), (91, 'tensorflow.equal', 'tf.equal', (['mode', 'tf.estimator.ModeKeys.EVAL'], {}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.equal', 'tf.equal', (['mode', 'tf.estimator.ModeKeys.PREDICT'], {}), True, 'import tensorflow as tf\n'), (56, 'tensorflow.placeholder_with_default', 'tf.placeholder_with_default', ([], {'input': 'tf.estimator.ModeKeys.TRAIN', 'shape': '()', 'name': '"""global_mode"""'}), True, 'import tensorflow as tf\n')] |
microsoft/DistributedBERT | e6245fee4d7123466a3e3b53f8afacffd6baa75f | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Run masked LM/next sentence masked_lm pre-training for BERT."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os
import modeling
import optimization
import tensorflow as tf
import horovod.tensorflow as hvd
from tensorflow.python import debug as tf_debug
flags = tf.flags
FLAGS = flags.FLAGS
## Required parameters
flags.DEFINE_string(
"bert_config_file", None,
"The config json file corresponding to the pre-trained BERT model. "
"This specifies the model architecture.")
flags.DEFINE_string(
"input_file", None,
"Input TF example files (can be a glob or comma separated).")
flags.DEFINE_string(
"validation_input_file", None,
"Input validation TF example files (can be a glob or comma separated).")
flags.DEFINE_string(
"input_dir", None,
"Input TF example dir.")
flags.DEFINE_string(
"validation_input_dir", None,
"Input validation TF example dir.")
flags.DEFINE_string(
"output_dir", None,
"The output directory where the model checkpoints will be written.")
## Other parameters
flags.DEFINE_string(
"init_checkpoint", None,
"Initial checkpoint (usually from a pre-trained BERT model).")
flags.DEFINE_integer(
"max_seq_length", 128,
"The maximum total input sequence length after WordPiece tokenization. "
"Sequences longer than this will be truncated, and sequences shorter "
"than this will be padded. Must match data generation.")
flags.DEFINE_integer(
"max_predictions_per_seq", 20,
"Maximum number of masked LM predictions per sequence. "
"Must match data generation.")
flags.DEFINE_bool("do_train", False, "Whether to run training.")
flags.DEFINE_bool("do_eval", False, "Whether to run eval on the dev set.")
flags.DEFINE_bool("do_train_eval", False, "Whether to run train with eval.")
flags.DEFINE_integer("train_batch_size", 32, "Total batch size for training.")
flags.DEFINE_integer("eval_batch_size", 8, "Total batch size for eval.")
flags.DEFINE_float("learning_rate", 5e-5, "The initial learning rate for Adam.")
flags.DEFINE_integer("num_train_steps", 100000, "Number of training steps.")
flags.DEFINE_integer("num_warmup_steps", 10000, "Number of warmup steps.")
flags.DEFINE_integer("save_checkpoints_steps", 1000,
"How often to save the model checkpoint.")
flags.DEFINE_integer("iterations_per_loop", 1000,
"How many steps to make in each estimator call.")
flags.DEFINE_integer("max_eval_steps", None, "Maximum number of eval steps.")
flags.DEFINE_bool("use_tpu", False, "Whether to use TPU or GPU/CPU.")
tf.flags.DEFINE_string(
"tpu_name", None,
"The Cloud TPU to use for training. This should be either the name "
"used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 "
"url.")
tf.flags.DEFINE_string(
"tpu_zone", None,
"[Optional] GCE zone where the Cloud TPU is located in. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string(
"gcp_project", None,
"[Optional] Project name for the Cloud TPU-enabled project. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string("master", None, "[Optional] TensorFlow master URL.")
flags.DEFINE_integer(
"num_tpu_cores", 8,
"Only used if `use_tpu` is True. Total number of TPU cores to use.")
flags.DEFINE_integer("hooking_frequence", 100, "Hooking frequence.")
flags.DEFINE_bool("reduce_log", False, "Reduce log.")
flags.DEFINE_integer("keep_checkpoint_max", 1, "Keep checkpoint max.")
flags.DEFINE_bool("xla", True, "Whether to train with XLA optimization.")
flags.DEFINE_bool("adjust_lr", True, "Whether to adjust learning_rate.")
flags.DEFINE_integer("previous_train_steps", 0, "Previous train steps.")
flags.DEFINE_integer("post_train_steps", 0, "Post train steps.")
flags.DEFINE_bool("use_hvd", True, "Whether to use Horovod.")
flags.DEFINE_bool("use_compression", True, "Whether to use compression in Horovod.")
flags.DEFINE_bool("use_fp16", True, "Whether to use fp16.")
flags.DEFINE_bool("cos_decay", False, "Whether to use cos decay.")
flags.DEFINE_bool("use_lamb", False, "Whether to use lamb.")
flags.DEFINE_bool("auto_recover", False, "Whether to use auto recover.")
flags.DEFINE_string("recover_dir", None, "The output directory where the model checkpoints will be recovered.")
flags.DEFINE_integer("ckpt_no", None, "Checkpoint number of model to be recovered.")
flags.DEFINE_integer("ckpt_no_input", None, "Checkpoint number of input to be recovered.")
flags.DEFINE_bool("clip", False, "Whether to use clip.")
flags.DEFINE_bool("profile", False, "Whether to use profile.")
def model_fn_builder(bert_config, init_checkpoint, learning_rate,
num_train_steps, num_warmup_steps, use_tpu,
use_one_hot_embeddings, adjust_lr, use_hvd,
use_compression, use_fp16, clip, cos_decay,
use_lamb, previous_train_steps, post_train_steps):
"""Returns `model_fn` closure for TPUEstimator."""
def model_fn(features, labels, mode, params): # pylint: disable=unused-argument
"""The `model_fn` for TPUEstimator."""
tf.logging.info("*** Features ***")
for name in sorted(features.keys()):
tf.logging.info(" name = %s, shape = %s" % (name, features[name].shape))
input_ids = features["input_ids"]
input_mask = features["input_mask"]
segment_ids = features["segment_ids"]
masked_lm_positions = features["masked_lm_positions"]
masked_lm_ids = features["masked_lm_ids"]
masked_lm_weights = features["masked_lm_weights"]
next_sentence_labels = features["next_sentence_labels"]
is_training = (mode == tf.estimator.ModeKeys.TRAIN)
model = modeling.BertModel(
config=bert_config,
is_training=is_training,
input_ids=input_ids,
input_mask=input_mask,
token_type_ids=segment_ids,
use_one_hot_embeddings=use_one_hot_embeddings,
compute_type=tf.float16 if use_fp16 else tf.float32)
(masked_lm_loss,
masked_lm_example_loss, masked_lm_log_probs) = get_masked_lm_output(
bert_config, model.get_sequence_output(), model.get_embedding_table(),
masked_lm_positions, masked_lm_ids, masked_lm_weights, clip)
(next_sentence_loss, next_sentence_example_loss,
next_sentence_log_probs) = get_next_sentence_output(
bert_config, model.get_pooled_output(), next_sentence_labels, clip)
total_loss = masked_lm_loss + next_sentence_loss
tvars = tf.trainable_variables()
initialized_variable_names = {}
scaffold_fn = None
if init_checkpoint:
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
if use_tpu:
def tpu_scaffold():
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
return tf.train.Scaffold()
scaffold_fn = tpu_scaffold
else:
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
tf.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
tf.logging.info(" name = %s, shape = %s%s", var.name, var.shape,
init_string)
output_spec = None
if mode == tf.estimator.ModeKeys.TRAIN:
train_op, update_learning_rate = optimization.create_optimizer(
total_loss, learning_rate, num_train_steps, num_warmup_steps, use_tpu, adjust_lr, use_hvd,
use_compression, use_fp16, clip, cos_decay, use_lamb, previous_train_steps, post_train_steps)
logging_hook = tf.train.LoggingTensorHook({"loss": total_loss, "learning_rate": update_learning_rate}, every_n_iter=FLAGS.hooking_frequence)
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
training_hooks=[logging_hook])
elif mode == tf.estimator.ModeKeys.EVAL:
def metric_fn(masked_lm_example_loss, masked_lm_log_probs, masked_lm_ids,
masked_lm_weights, next_sentence_example_loss,
next_sentence_log_probs, next_sentence_labels):
"""Computes the loss and accuracy of the model."""
masked_lm_log_probs = tf.reshape(masked_lm_log_probs,
[-1, masked_lm_log_probs.shape[-1]])
masked_lm_predictions = tf.argmax(
masked_lm_log_probs, axis=-1, output_type=tf.int32)
masked_lm_example_loss = tf.reshape(masked_lm_example_loss, [-1])
masked_lm_ids = tf.reshape(masked_lm_ids, [-1])
masked_lm_weights = tf.reshape(masked_lm_weights, [-1])
masked_lm_accuracy = tf.metrics.accuracy(
labels=masked_lm_ids,
predictions=masked_lm_predictions,
weights=masked_lm_weights)
masked_lm_mean_loss = tf.metrics.mean(
values=masked_lm_example_loss, weights=masked_lm_weights)
next_sentence_log_probs = tf.reshape(
next_sentence_log_probs, [-1, next_sentence_log_probs.shape[-1]])
next_sentence_predictions = tf.argmax(
next_sentence_log_probs, axis=-1, output_type=tf.int32)
next_sentence_labels = tf.reshape(next_sentence_labels, [-1])
next_sentence_accuracy = tf.metrics.accuracy(
labels=next_sentence_labels, predictions=next_sentence_predictions)
next_sentence_mean_loss = tf.metrics.mean(
values=next_sentence_example_loss)
return {
"masked_lm_accuracy": masked_lm_accuracy,
"masked_lm_loss": masked_lm_mean_loss,
"next_sentence_accuracy": next_sentence_accuracy,
"next_sentence_loss": next_sentence_mean_loss,
}
eval_metrics = metric_fn(
masked_lm_example_loss, masked_lm_log_probs, masked_lm_ids,
masked_lm_weights, next_sentence_example_loss,
next_sentence_log_probs, next_sentence_labels
)
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
eval_metric_ops=eval_metrics)
else:
raise ValueError("Only TRAIN and EVAL modes are supported: %s" % (mode))
return output_spec
return model_fn
def get_masked_lm_output(bert_config, input_tensor, output_weights, positions,
label_ids, label_weights, clip):
"""Get loss and log probs for the masked LM."""
input_tensor = gather_indexes(input_tensor, positions)
with tf.variable_scope("cls/predictions"):
# We apply one more non-linear transformation before the output layer.
# This matrix is not used after pre-training.
with tf.variable_scope("transform"):
input_tensor = tf.layers.dense(
input_tensor,
units=bert_config.hidden_size,
activation=modeling.get_activation(bert_config.hidden_act),
kernel_initializer=modeling.create_initializer(
bert_config.initializer_range))
input_tensor = modeling.layer_norm(input_tensor)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
output_bias = tf.get_variable(
"output_bias",
shape=[bert_config.vocab_size],
initializer=tf.zeros_initializer())
logits = tf.matmul(input_tensor, output_weights, transpose_b=True)
logits = tf.nn.bias_add(logits, output_bias)
if clip:
log_probs = tf.log(tf.clip_by_value(tf.nn.softmax(logits, axis=-1), 1e-6, 1.0 - 1e-6))
else:
log_probs = tf.nn.log_softmax(logits, axis=-1)
label_ids = tf.reshape(label_ids, [-1])
label_weights = tf.reshape(label_weights, [-1])
one_hot_labels = tf.one_hot(
label_ids, depth=bert_config.vocab_size, dtype=tf.float32)
# The `positions` tensor might be zero-padded (if the sequence is too
# short to have the maximum number of predictions). The `label_weights`
# tensor has a value of 1.0 for every real prediction and 0.0 for the
# padding predictions.
per_example_loss = -tf.reduce_sum(log_probs * one_hot_labels, axis=[-1])
numerator = tf.reduce_sum(label_weights * per_example_loss)
denominator = tf.reduce_sum(label_weights) + 1e-5
loss = numerator / denominator
return (loss, per_example_loss, log_probs)
def get_next_sentence_output(bert_config, input_tensor, labels, clip):
"""Get loss and log probs for the next sentence prediction."""
# Simple binary classification. Note that 0 is "next sentence" and 1 is
# "random sentence". This weight matrix is not used after pre-training.
with tf.variable_scope("cls/seq_relationship"):
output_weights = tf.get_variable(
"output_weights",
shape=[2, bert_config.hidden_size],
initializer=modeling.create_initializer(bert_config.initializer_range))
output_bias = tf.get_variable(
"output_bias", shape=[2], initializer=tf.zeros_initializer())
logits = tf.matmul(input_tensor, output_weights, transpose_b=True)
logits = tf.nn.bias_add(logits, output_bias)
if clip:
log_probs = tf.log(tf.clip_by_value(tf.nn.softmax(logits, axis=-1), 1e-6, 1.0 - 1e-6))
else:
log_probs = tf.nn.log_softmax(logits, axis=-1)
labels = tf.reshape(labels, [-1])
one_hot_labels = tf.one_hot(labels, depth=2, dtype=tf.float32)
per_example_loss = -tf.reduce_sum(one_hot_labels * log_probs, axis=-1)
loss = tf.reduce_mean(per_example_loss)
return (loss, per_example_loss, log_probs)
def gather_indexes(sequence_tensor, positions):
"""Gathers the vectors at the specific positions over a minibatch."""
sequence_shape = modeling.get_shape_list(sequence_tensor, expected_rank=3)
batch_size = sequence_shape[0]
seq_length = sequence_shape[1]
width = sequence_shape[2]
flat_offsets = tf.reshape(
tf.range(0, batch_size, dtype=tf.int32) * seq_length, [-1, 1])
flat_positions = tf.reshape(positions + flat_offsets, [-1])
flat_sequence_tensor = tf.reshape(sequence_tensor,
[batch_size * seq_length, width])
output_tensor = tf.gather(flat_sequence_tensor, flat_positions)
return output_tensor
def input_fn_builder(input_files,
max_seq_length,
max_predictions_per_seq,
is_training,
num_cpu_threads=4,
batch_size=None,
use_hvd=True):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
def input_fn(params):
"""The actual input function."""
# batch_size = params["batch_size"]
name_to_features = {
"input_ids":
tf.FixedLenFeature([max_seq_length], tf.int64),
"input_mask":
tf.FixedLenFeature([max_seq_length], tf.int64),
"segment_ids":
tf.FixedLenFeature([max_seq_length], tf.int64),
"masked_lm_positions":
tf.FixedLenFeature([max_predictions_per_seq], tf.int64),
"masked_lm_ids":
tf.FixedLenFeature([max_predictions_per_seq], tf.int64),
"masked_lm_weights":
tf.FixedLenFeature([max_predictions_per_seq], tf.float32),
"next_sentence_labels":
tf.FixedLenFeature([1], tf.int64),
}
# For training, we want a lot of parallel reading and shuffling.
# For eval, we want no shuffling and parallel reading doesn't matter.
if is_training:
d = tf.data.Dataset.from_tensor_slices(tf.constant(input_files))
if use_hvd:
d = d.shard(hvd.size(), hvd.rank()) #TODO only for Horovod, shard to mimic single_GPU = False
print("Data shard: %s %s" % (hvd.size(), hvd.rank()))
d = d.repeat()
d = d.shuffle(buffer_size=len(input_files))
# `cycle_length` is the number of parallel files that get read.
cycle_length = min(num_cpu_threads, len(input_files))
# `sloppy` mode means that the interleaving is not exact. This adds
# even more randomness to the training pipeline.
d = d.apply(
tf.contrib.data.parallel_interleave(
tf.data.TFRecordDataset,
sloppy=is_training,
cycle_length=cycle_length))
d = d.shuffle(buffer_size=100)
else:
d = tf.data.TFRecordDataset(input_files)
# Since we evaluate for a fixed number of steps we don't want to encounter
# out-of-range exceptions.
# d = d.repeat()
# We must `drop_remainder` on training because the TPU requires fixed
# size dimensions. For eval, we assume we are evaluating on the CPU or GPU
# and we *don't* want to drop the remainder, otherwise we wont cover
# every sample.
d = d.apply(
tf.contrib.data.map_and_batch(
lambda record: _decode_record(record, name_to_features),
batch_size=batch_size,
num_parallel_batches=num_cpu_threads,
drop_remainder=True))
return d
return input_fn
def _decode_record(record, name_to_features):
"""Decodes a record to a TensorFlow example."""
example = tf.parse_single_example(record, name_to_features)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name in list(example.keys()):
t = example[name]
if t.dtype == tf.int64:
t = tf.to_int32(t)
example[name] = t
return example
def main(_):
tf.logging.set_verbosity(tf.logging.INFO)
if FLAGS.use_hvd:
hvd.init()
if FLAGS.reduce_log and (hvd.rank() != 0):
tf.logging.set_verbosity(tf.logging.ERROR)
FLAGS.output_dir = FLAGS.output_dir if hvd.rank() == 0 else os.path.join(FLAGS.output_dir, str(hvd.rank()))
if not FLAGS.do_train and not FLAGS.do_eval and not FLAGS.do_train_eval:
raise ValueError("At least one of `do_train` or `do_eval` must be True.")
bert_config = modeling.BertConfig.from_json_file(FLAGS.bert_config_file)
tf.gfile.MakeDirs(FLAGS.output_dir)
if FLAGS.recover_dir is not None:
if FLAGS.use_hvd:
FLAGS.recover_dir = FLAGS.recover_dir if hvd.rank() == 0 else os.path.join(FLAGS.recover_dir, str(hvd.rank()))
path_ckpt = os.path.join(FLAGS.output_dir, "checkpoint")
path_ckpt_input = os.path.join(FLAGS.output_dir, "checkpoint_input")
if FLAGS.ckpt_no is not None and not tf.gfile.Exists(path_ckpt):
with tf.gfile.GFile(path_ckpt, "w") as writer:
writer.write('model_checkpoint_path: "%s-%s"\n' % (os.path.join(FLAGS.recover_dir, "model.ckpt"), str(FLAGS.ckpt_no)))
writer.write('all_model_checkpoint_paths: "%s-%s"\n' % (os.path.join(FLAGS.recover_dir, "model.ckpt"), str(FLAGS.ckpt_no)))
if FLAGS.ckpt_no_input is not None and not tf.gfile.Exists(path_ckpt_input):
with tf.gfile.GFile(path_ckpt_input, "w") as writer:
writer.write('model_checkpoint_path: "%s-%s"\n' % (os.path.join(FLAGS.recover_dir, "input.ckpt"), str(FLAGS.ckpt_no_input)))
writer.write('all_model_checkpoint_paths: "%s-%s"\n' % (os.path.join(FLAGS.recover_dir, "input.ckpt"), str(FLAGS.ckpt_no_input)))
if FLAGS.use_hvd and hvd.rank() == 0 and (FLAGS.do_train or FLAGS.do_train_eval):
(cpath, cname) = os.path.split(FLAGS.bert_config_file)
tf.gfile.Copy(FLAGS.bert_config_file, os.path.join(FLAGS.output_dir, cname), True)
input_files = []
if FLAGS.input_file is not None:
for input_pattern in FLAGS.input_file.split(","):
input_files.extend(tf.gfile.Glob(input_pattern))
if FLAGS.input_dir is not None:
for filename in tf.gfile.ListDirectory(FLAGS.input_dir):
input_files.extend(tf.gfile.Glob(os.path.join(FLAGS.input_dir, filename)))
tf.logging.info("*** Input Files ***")
for input_file in input_files:
tf.logging.info(" %s" % input_file)
validation_input_files = []
if FLAGS.validation_input_file is None and FLAGS.validation_input_dir is None:
validation_input_files = input_files
else:
if FLAGS.validation_input_file is not None:
for input_pattern in FLAGS.validation_input_file.split(","):
validation_input_files.extend(tf.gfile.Glob(input_pattern))
if FLAGS.validation_input_dir is not None:
for filename in tf.gfile.ListDirectory(FLAGS.validation_input_dir):
validation_input_files.extend(tf.gfile.Glob(os.path.join(FLAGS.validation_input_dir, filename)))
tf.logging.info("*** Input Validation Files ***")
for input_file in validation_input_files:
tf.logging.info(" %s" % input_file)
config = tf.ConfigProto()
if FLAGS.xla:
config.graph_options.optimizer_options.global_jit_level = tf.OptimizerOptions.ON_1
if FLAGS.use_hvd:
config.gpu_options.visible_device_list = str(hvd.local_rank())
config.gpu_options.allow_growth=True
run_config = tf.estimator.RunConfig(
model_dir=FLAGS.output_dir,
keep_checkpoint_max=FLAGS.keep_checkpoint_max,
save_checkpoints_steps=FLAGS.save_checkpoints_steps,
log_step_count_steps=FLAGS.hooking_frequence,
session_config=config)
if FLAGS.use_hvd and hvd.rank() != 0 and not FLAGS.auto_recover:
run_config = tf.estimator.RunConfig(
model_dir=FLAGS.output_dir,
keep_checkpoint_max=FLAGS.keep_checkpoint_max,
save_checkpoints_steps=None,
save_checkpoints_secs=None,
log_step_count_steps=FLAGS.hooking_frequence,
session_config=config)
model_fn = model_fn_builder(
bert_config=bert_config,
init_checkpoint=FLAGS.init_checkpoint,
learning_rate=FLAGS.learning_rate,
num_train_steps=FLAGS.num_train_steps,
num_warmup_steps=FLAGS.num_warmup_steps,
use_tpu=FLAGS.use_tpu,
use_one_hot_embeddings=FLAGS.use_tpu,
adjust_lr=FLAGS.adjust_lr,
use_hvd=FLAGS.use_hvd,
use_compression=FLAGS.use_compression,
use_fp16=FLAGS.use_fp16,
clip=FLAGS.clip,
cos_decay=FLAGS.cos_decay,
use_lamb=FLAGS.use_lamb,
previous_train_steps=FLAGS.previous_train_steps,
post_train_steps=FLAGS.post_train_steps)
hooks = []
if FLAGS.use_hvd:
hooks.append(hvd.BroadcastGlobalVariablesHook(0))
if hvd.rank() == -1: #if debug, set 0
CLIDebugHook = tf_debug.LocalCLIDebugHook(ui_type='readline')
CLIDebugHook.add_tensor_filter("has_inf_or_nan", tf_debug.has_inf_or_nan)
hooks.append(CLIDebugHook)
if FLAGS.profile and hvd.rank() == 0:
ProfilerHook = tf.train.ProfilerHook(save_steps=FLAGS.hooking_frequence, output_dir=FLAGS.output_dir, show_dataflow=True, show_memory=True)
hooks.append(ProfilerHook)
# If TPU is not available, this will fall back to normal Estimator on CPU
# or GPU.
estimator = tf.estimator.Estimator(
model_fn=model_fn,
config=run_config)
if FLAGS.do_train:
tf.logging.info("***** Running training *****")
tf.logging.info(" Batch size = %d", FLAGS.train_batch_size)
train_input_fn = input_fn_builder(
input_files=input_files,
max_seq_length=FLAGS.max_seq_length,
max_predictions_per_seq=FLAGS.max_predictions_per_seq,
is_training=True,
batch_size=FLAGS.train_batch_size,
use_hvd=FLAGS.use_hvd)
if FLAGS.auto_recover:
hooks.append(tf.data.experimental.CheckpointInputPipelineHook(estimator))
estimator.train(input_fn=train_input_fn, max_steps=FLAGS.num_train_steps, hooks=hooks)
if FLAGS.do_eval:
tf.logging.info("***** Running evaluation *****")
tf.logging.info(" Batch size = %d", FLAGS.eval_batch_size)
eval_input_fn = input_fn_builder(
input_files=validation_input_files,
max_seq_length=FLAGS.max_seq_length,
max_predictions_per_seq=FLAGS.max_predictions_per_seq,
is_training=False,
batch_size=FLAGS.eval_batch_size,
use_hvd=FLAGS.use_hvd)
result = estimator.evaluate(
input_fn=eval_input_fn, steps=FLAGS.max_eval_steps)
output_eval_file = os.path.join(FLAGS.output_dir, "eval_results.txt")
with tf.gfile.GFile(output_eval_file, "w") as writer:
tf.logging.info("***** Eval results *****")
for key in sorted(result.keys()):
tf.logging.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
if FLAGS.do_train_eval:
tf.logging.info("***** Running training *****")
tf.logging.info(" Batch size = %d", FLAGS.train_batch_size)
train_input_fn = input_fn_builder(
input_files=input_files,
max_seq_length=FLAGS.max_seq_length,
max_predictions_per_seq=FLAGS.max_predictions_per_seq,
is_training=True,
batch_size=FLAGS.train_batch_size,
use_hvd=FLAGS.use_hvd)
tf.logging.info("***** Running evaluation *****")
tf.logging.info(" Batch size = %d", FLAGS.eval_batch_size)
eval_input_fn = input_fn_builder(
input_files=validation_input_files,
max_seq_length=FLAGS.max_seq_length,
max_predictions_per_seq=FLAGS.max_predictions_per_seq,
is_training=False,
batch_size=FLAGS.eval_batch_size,
use_hvd=FLAGS.use_hvd)
if FLAGS.auto_recover:
hooks.append(tf.data.experimental.CheckpointInputPipelineHook(estimator))
train_spec = tf.estimator.TrainSpec(input_fn=train_input_fn, max_steps=FLAGS.num_train_steps, hooks=hooks)
eval_spec = tf.estimator.EvalSpec(input_fn=eval_input_fn, steps=FLAGS.max_eval_steps)
tf.estimator.train_and_evaluate(estimator, train_spec, eval_spec)
if __name__ == "__main__":
# flags.mark_flag_as_required("input_file")
flags.mark_flag_as_required("bert_config_file")
flags.mark_flag_as_required("output_dir")
tf.app.run()
| [
"tensorflow.train.LoggingTensorHook",
"tensorflow.metrics.accuracy",
"tensorflow.nn.log_softmax",
"tensorflow.FixedLenFeature",
"tensorflow.gfile.Exists",
"tensorflow.reduce_sum",
"tensorflow.gfile.GFile",
"tensorflow.train.init_from_checkpoint",
"tensorflow.contrib.data.parallel_interleave",
"tensorflow.gfile.MakeDirs",
"tensorflow.estimator.RunConfig",
"tensorflow.to_int32",
"tensorflow.estimator.train_and_evaluate",
"tensorflow.data.TFRecordDataset",
"tensorflow.ConfigProto",
"tensorflow.gather",
"tensorflow.logging.set_verbosity",
"tensorflow.estimator.EvalSpec",
"tensorflow.train.ProfilerHook",
"tensorflow.trainable_variables",
"tensorflow.parse_single_example",
"tensorflow.argmax",
"tensorflow.python.debug.LocalCLIDebugHook",
"tensorflow.app.run",
"tensorflow.gfile.ListDirectory",
"tensorflow.matmul",
"tensorflow.metrics.mean",
"tensorflow.estimator.Estimator",
"tensorflow.data.experimental.CheckpointInputPipelineHook",
"tensorflow.zeros_initializer",
"tensorflow.estimator.TrainSpec",
"tensorflow.logging.info",
"tensorflow.one_hot",
"tensorflow.gfile.Glob",
"tensorflow.nn.bias_add",
"tensorflow.train.Scaffold",
"tensorflow.constant",
"tensorflow.nn.softmax",
"tensorflow.range",
"tensorflow.reduce_mean",
"tensorflow.flags.DEFINE_string",
"tensorflow.reshape",
"tensorflow.estimator.EstimatorSpec",
"tensorflow.variable_scope"
] | run_pretraining.py | [(100, 'tensorflow.flags.DEFINE_string', 'tf.flags.DEFINE_string', (['"""tpu_name"""', 'None', '"""The Cloud TPU to use for training. This should be either the name used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 url."""'], {}), True, 'import tensorflow as tf\n'), (106, 'tensorflow.flags.DEFINE_string', 'tf.flags.DEFINE_string', (['"""tpu_zone"""', 'None', '"""[Optional] GCE zone where the Cloud TPU is located in. If not specified, we will attempt to automatically detect the GCE project from metadata."""'], {}), True, 'import tensorflow as tf\n'), (112, 'tensorflow.flags.DEFINE_string', 'tf.flags.DEFINE_string', (['"""gcp_project"""', 'None', '"""[Optional] Project name for the Cloud TPU-enabled project. 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stephenjfox/trax | 918b1ce2ad63a24cb957ebc8e8ea0af1ee272666 | # coding=utf-8
# Copyright 2022 The Trax Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Lint as: python3
"""TensorFlow data sources and associated prepocessing functions."""
import functools
import itertools
import json
import math
import os
import random
import re
from absl import logging
import gin
import jax
import numpy as np
import scipy
import tensorflow as tf
from tensorflow import estimator as tf_estimator
import tensorflow_datasets as tfds
import tensorflow_text as tf_text
from trax import data
from trax import fastmath
from trax import layers as tl
from trax import supervised
from trax.data import debug_data_pipeline
from trax.data import text_encoder
from trax.fastmath import numpy as jnp
# How many examples from the stream to skip at random during training.
# For now, we skip at most 100K examples for efficiency.
# TODO(lukaszkaiser): can we improve efficiency, should that be changed?
_MAX_SKIP_EXAMPLES = 1e5
def t5_data():
"""Get the T5 data module if available."""
module = None
try:
import t5.data # pylint: disable=g-import-not-at-top
module = t5.data
except AttributeError as e:
logging.error('pip install t5')
raise e
return module
def no_preprocess(dataset, training):
del training
return dataset
def t2t_problems():
# Load t2t problems on request only, this should save some import time.
from tensor2tensor import problems_colab as t2tp # pylint: disable=g-import-not-at-top
return t2tp
# TODO(jonni): Rename function to better match its return values.
@gin.configurable(module='trax.data')
def data_streams(dataset_name,
data_dir=None,
preprocess_fn=no_preprocess,
bare_preprocess_fn=None,
shuffle_buffer_size=1024,
eval_holdout_size=0,
input_name=None,
target_name=None):
"""Creates `(train, eval)` data sources from ``dataset_name``.
Args:
dataset_name: Name of dataset belonging to TFDS or T2T. T2T dataset names
must start with ``'t2t_'``.
data_dir: Directory where the data is located.
preprocess_fn: Function to use for pre-processing after appending targets to
inputs.
bare_preprocess_fn: Function to use for pre-processing before appending
targets to inputs.
shuffle_buffer_size: Size of the shuffle buffer.
eval_holdout_size: If greater than 0, specifies a fraction of training data
to siphon off and use as eval data, in place of an separate eval split.
input_name: Name of the inputs from the dictionary.
target_name: Name of the outputs either from the dictionary or as a result
of post-processing.
Returns:
A pair of functions, `(f, g)` for use as data sources; call `f()` to get an
iterator of training data samples, and call `g()` to get an iterator of eval
data samples.
"""
data_dir = download_and_prepare(dataset_name, data_dir)
cache = []
def stream(which):
"""Create the stream, cache TF streams if needed."""
if not cache:
cache.append(
_train_and_eval_streams(dataset_name, data_dir, preprocess_fn,
bare_preprocess_fn, shuffle_buffer_size,
eval_holdout_size, input_name, target_name))
(train_ds, eval_ds, input_name_c) = cache[0]
dataset = eval_ds if which == 'eval' else train_ds
return dataset_to_stream(dataset, input_name_c)
train_stream = lambda: stream('train')
eval_stream = lambda: stream('eval')
return train_stream, eval_stream
def dataset_to_stream(dataset, input_name):
"""Takes a tf.Dataset and creates a numpy stream of ready batches."""
# All input-pipeline processing should be on CPU.
for example in fastmath.dataset_as_numpy(dataset):
features = example[0]
inp, out = features[input_name], example[1]
mask = features['mask'] if 'mask' in features else None
# Some accelerators don't handle uint8 well, cast to int.
if isinstance(inp, np.uint8):
inp = inp.astype(np.int32)
if isinstance(out, np.uint8):
out = out.astype(np.int32)
yield (inp, out) if mask is None else (inp, out, mask)
def _train_and_eval_streams(dataset, data_dir, preprocess_fn,
bare_preprocess_fn, shuffle_buffer_size,
eval_holdout_size, input_name, target_name):
"""Return train and eval batches with input name and shape."""
(train_data, eval_data,
keys) = _train_and_eval_dataset(dataset, data_dir, eval_holdout_size)
# If provided select input_name/target_name else fall back to keys if that is
# available, else [None].
input_names = ([input_name] if input_name is not None else
keys[0] if keys is not None else [None])
target_names = ([target_name] if target_name is not None else
keys[1] if keys is not None else [None])
train_batches = _shuffle_data(train_data, target_names, True,
shuffle_buffer_size, preprocess_fn,
bare_preprocess_fn)
eval_batches = _shuffle_data(eval_data, target_names, False,
shuffle_buffer_size, preprocess_fn,
bare_preprocess_fn)
return (train_batches, eval_batches, input_names[0])
def _shuffle_data(dataset, target_names, training, shuffle_buffer_size,
preprocess_fn, bare_preprocess_fn):
"""Shuffle the given dataset and run pre-processing."""
def append_targets(example):
"""Append targets to the example dictionary. Needed for Keras."""
if len(target_names) == 1:
return (example, example[target_names[0]])
targets = {}
for name in target_names:
targets[name] = example[name]
return (example, targets)
# `bare_preprocess_fn` is called before appending targets etc.
if bare_preprocess_fn is not None:
dataset = bare_preprocess_fn(dataset, training)
dataset = dataset.map(append_targets)
# TODO(pkozakowski): Repeat both the training and evaluation set, so we don't
# have incomplete batches during evaluation. This will be a problem when we
# add an option to evaluate on the whole dataset, then we'll need to think of
# a different solution.
dataset = dataset.repeat()
if training:
# Skip a random fraction at the beginning of the stream. The skip is
# essential for synchronous highly-parallel training to avoid multiple
# replicas reading the same data in lock-step.
dataset = dataset.skip(random.randint(0, _MAX_SKIP_EXAMPLES))
dataset = preprocess_fn(dataset, training)
dataset = dataset.shuffle(shuffle_buffer_size)
return dataset.prefetch(8)
def _train_and_eval_dataset(dataset_name,
data_dir,
eval_holdout_size,
train_shuffle_files=True,
eval_shuffle_files=False,
use_alt_eval=False,
subsplit=None):
"""Return train and evaluation datasets, feature info and supervised keys.
Args:
dataset_name: a string, the name of the dataset; if it starts with 't2t_'
then we'll search T2T Problem registry for it, otherwise we assume it is a
dataset from TFDS and load it from there.
data_dir: directory where the data is located.
eval_holdout_size: float from 0 to <1; if >0 use this much of training data
for evaluation (instead of looking for a pre-specified VALIDATION split).
train_shuffle_files: Boolean determining whether or not to shuffle the train
files at startup. Set to False if you want data determinism.
eval_shuffle_files: Boolean determining whether or not to shuffle the test
files at startup. Set to False if you want data determinism.
use_alt_eval: If True, use the dataset's alternate/secondary eval split;
else use the dataset's default/only eval split. Currently, only the
`glue/mnli` dataset provides an alternate eval split, and this arg is
ignored for other datasets.
subsplit: a pair of floats (x, y), both in [0, 1], saying which part of the
full training dataset we should return (default: all of it, [0, 1]).
Returns:
a 4-tuple consisting of:
* the train tf.Dataset
* the eval tf.Dataset
* information about features: a python dictionary with feature names
as keys and an object as value that provides .shape and .n_classes.
* supervised_keys: information what's the input and what's the target,
ie., a pair of lists with input and target feature names.
"""
logging.info('Building TF data pipeline for %s', dataset_name)
if dataset_name.startswith('t2t_'):
return _train_and_eval_dataset_v1(dataset_name[4:], data_dir,
train_shuffle_files, eval_shuffle_files)
dataset_builder = tfds.builder(dataset_name, data_dir=data_dir)
info = dataset_builder.info
splits = dataset_builder.info.splits
if dataset_name != 'c4/multilingual' and tfds.Split.TRAIN not in splits:
raise ValueError('To train we require a train split in the dataset.')
train_split = tfds.Split.TRAIN if dataset_name != 'c4/multilingual' else 'en'
eval_split = None
train_examples = info.splits[train_split].num_examples
eval_holdout_examples = int(train_examples * eval_holdout_size)
if eval_holdout_examples > 0 or subsplit is not None:
if subsplit is None:
subsplit = (0, 1)
n_train = train_examples - eval_holdout_examples
train_start = int(n_train * subsplit[0])
train_end = int(n_train * subsplit[1])
if train_end - train_start < 1:
raise ValueError('Requested train subsplit has no examples: '
'n_train %d subsplit %s' % (n_train, subsplit))
# Eval holdout examples from the end of the training set.
if eval_holdout_examples > 0:
eval_split = f'{train_split}[-{eval_holdout_examples}:]'
# Shard the training set for this host.
train_split = f'{train_split}[{train_start}:{train_end}]'
if dataset_name == 'glue/mnli':
eval_split = (
'validation_mismatched' if use_alt_eval else 'validation_matched')
elif dataset_name == 'c4/multilingual':
eval_split = 'en-validation'
elif eval_split is None:
if tfds.Split.VALIDATION not in splits and 'test' not in splits:
raise ValueError('We require a validation or test split in the dataset.')
eval_split = tfds.Split.VALIDATION
if tfds.Split.VALIDATION not in splits:
eval_split = tfds.Split.TEST
train = tfds.load(
name=dataset_name,
split=train_split,
data_dir=data_dir,
shuffle_files=train_shuffle_files)
valid = tfds.load(
name=dataset_name,
split=eval_split,
data_dir=data_dir,
shuffle_files=eval_shuffle_files)
keys = None
if info.supervised_keys:
keys = ([info.supervised_keys[0]], [info.supervised_keys[1]])
return train, valid, keys
# TODO(jonni): Consider renaming this function.
@gin.configurable(module='trax.data')
def TFDS( # pylint: disable=invalid-name
dataset_name,
data_dir=None,
tfds_preprocess_fn=None,
keys=None,
train=True,
use_alt_eval=False,
shuffle_train=True,
host_id=None,
n_hosts=None,
eval_holdout_size=0):
"""Creates a data source from TensorFlow dataset ``dataset_name``.
Args:
dataset_name: Name of the dataset, as registered in TensorFlow datasets
(e.g., ``'glue/mnli'``).
data_dir: Directory where the data is located.
tfds_preprocess_fn: If specified, function that applies to items in raw
dataset (before selecting specific features).
keys: Tuple of dataset-specific strings that select features from the
dataset.
train: If True, select the training split from the dataset; else select an
eval split.
use_alt_eval: If True, and if ``train`` is False, select the dataset's
alternate eval split if it has one (or fall back to the dataset's only
eval split). This currently affects only the `glue/mnli` dataset.
shuffle_train: If True, have TensorFlow pre-shuffle the training data; else
receive training data in deterministic sequence.
host_id: Integer id used for tracking data subsplits, in cases where
``n_hosts`` > 1.
n_hosts: If greater than 1, prepare data subsplits for the given number of
hosts.
eval_holdout_size: If greater than 0, specifies a fraction of training data
to siphon off and use as eval data, in place of an separate eval split.
Returns:
A function `f` for use as a training or eval data source; call `f()` to get
an iterator of data samples.
"""
data_dir = download_and_prepare(dataset_name, data_dir)
host_id = jax.process_index() if host_id is None else host_id
n_hosts = n_hosts or jax.host_count()
if n_hosts > 1:
subsplit = (host_id / n_hosts, (host_id + 1) / n_hosts)
else:
subsplit = None
train_data, eval_data, _ = (
_train_and_eval_dataset(dataset_name,
data_dir,
eval_holdout_size,
train_shuffle_files=shuffle_train,
use_alt_eval=use_alt_eval,
subsplit=subsplit))
dataset = train_data if train else eval_data
dataset = dataset if tfds_preprocess_fn is None else tfds_preprocess_fn(
dataset)
def select_from(example):
return tuple(example[k] for k in keys)
dataset = dataset.map(select_from)
dataset = dataset.repeat()
def gen(generator=None):
del generator
for example in fastmath.dataset_as_numpy(dataset):
yield example
return gen
def _select_features(example, feature_list=None):
"""Select a subset of features from the example dict."""
feature_list = feature_list or ['inputs', 'targets']
return {f: example[f] for f in feature_list if f in example}
def _eager_dataset_iterator(dataset):
for item in dataset:
flat = tf.nest.flatten(item)
flat = [el.numpy() for el in flat]
yield tf.nest.pack_sequence_as(item, flat)
def _train_and_eval_dataset_v1(problem_name, data_dir, train_shuffle_files,
eval_shuffle_files):
"""Return train and evaluation datasets, feature info and supervised keys."""
with tf.device('cpu:0'):
problem = t2t_problems().problem(problem_name)
hparams = None
if problem_name == 'video_bair_robot_pushing':
hparams = problem.get_hparams()
bair_robot_pushing_hparams(hparams)
train_dataset = problem.dataset(
tf_estimator.ModeKeys.TRAIN,
data_dir,
shuffle_files=train_shuffle_files,
hparams=hparams)
train_dataset = train_dataset.map(_select_features)
eval_dataset = problem.dataset(
tf_estimator.ModeKeys.EVAL,
data_dir,
shuffle_files=eval_shuffle_files,
hparams=hparams)
eval_dataset = eval_dataset.map(_select_features)
# TODO(lukaszkaiser): remove this need for one example, just input_key.
examples = list(tfds.as_numpy(train_dataset.take(1)))
# We use 'inputs' as input except for purely auto-regressive tasks like
# language models where 'targets' are used as input_key.
input_key = 'inputs' if 'inputs' in examples[0] else 'targets'
supervised_keys = ([input_key], ['targets'])
return train_dataset, eval_dataset, supervised_keys
# Tokenization.
@debug_data_pipeline.debug_pipeline
def tokenize(stream,
keys=None,
vocab_type='subword',
vocab_file=None,
vocab_dir=None,
n_reserved_ids=0):
"""Tokenize examples from the stream.
This function assumes that `stream` generates either strings or tuples/dicts
containing strings at some `keys`. This function maps these strings to
numpy arrays of integers -- the tokenized version of each string.
Args:
stream: A python generator yielding strings, tuples or dicts.
keys: which keys of the tuple/dict to tokenize (by default: all)
vocab_type: Type of vocabulary, one of: 'subword', 'sentencepiece', 'char'.
vocab_file: Name of the vocabulary file.
vocab_dir: Directory which contains the vocabulary file.
n_reserved_ids: An int, offset added so 0, ..., n_reserved_ids-1 are unused;
This is common for example when reserving the 0 for padding and 1 for EOS,
but it's only needed if these symbols are not already included (and thus
reserved) in the vocab_file.
Yields:
Examples from stream with strings at `keys` replaced by np.arrays of
integers -- the tokenized version of these strings.
"""
vocab = _get_vocab(vocab_type, vocab_file, vocab_dir)
for example in stream:
if isinstance(example, (list, tuple)):
new_example = []
for i, x in enumerate(example):
if keys is None or i in keys:
new_example.append(np.array(vocab.encode(x)) + n_reserved_ids)
else:
new_example.append(x)
output = tuple(new_example)
yield output
elif isinstance(example, dict):
new_example = {}
for k in example:
if keys is None or k in keys:
new_example[k] = np.array(vocab.encode(example[k])) + n_reserved_ids
else:
new_example[k] = example[k]
yield new_example
else:
output = np.array(vocab.encode(example)) + n_reserved_ids
yield output
@gin.configurable(module='trax.data')
def Tokenize( # pylint: disable=invalid-name
keys=None,
vocab_type='subword', # pylint: disable=invalid-name
vocab_file=None,
vocab_dir=None,
n_reserved_ids=0):
"""Returns a function that maps text to integer arrays; see `tokenize`."""
return lambda g: tokenize( # pylint: disable=g-long-lambda
g,
keys=keys,
vocab_type=vocab_type,
vocab_file=vocab_file,
vocab_dir=vocab_dir,
n_reserved_ids=n_reserved_ids)
def detokenize(x,
vocab_type='subword',
vocab_file=None,
vocab_dir=None,
n_reserved_ids=0):
"""Maps integer arrays to text; the opposite of `tokenize`.
In many cases (all char- and subword-type vocabularies and most sentencepiece
ones) the tokenization is invertible, so detokenize(tokenize(x)) = x. In some
more rare cases this can remove some spacing, but it is still often useful
to run detokenize to get a readable version for a tokenized string.
Args:
x: a list or numpy array of integers.
vocab_type: Type of vocabulary, one of: 'subword', 'sentencepiece', 'char'.
vocab_file: Name of the vocabulary file.
vocab_dir: Directory which contains the vocabulary file.
n_reserved_ids: An int, offset added so 0, ..., n_reserved_ids-1 are unused;
This is common for example when reserving the 0 for padding and 1 for EOS,
but it's only needed if these symbols are not already included (and thus
reserved) in the vocab_file.
Returns:
A string corresponding to the de-tokenized version of x.
"""
vocab = _get_vocab(vocab_type, vocab_file, vocab_dir)
x_unreserved = np.array(x) - n_reserved_ids
return str(vocab.decode(x_unreserved.tolist()))
def _to_unicode(s):
# Errors of the casting are ignored (e.g. sequences not allowed by UTF-8),
# in order not to stay with incomplete examples (with empty values).
return str(s, encoding='utf-8', errors='ignore')
@gin.configurable(module='trax.data')
def ConvertToUnicode(keys=None): # pylint: disable=invalid-name
"""Converts to Unicode UTF-8 elements of an example.
Useful for when TFDS outputs byte arrays. All of the errors of the conversion
are ignored.
Args:
keys: tuple/list of example dimensions to convert.
Returns:
Function converting chosen elements of an example to UTF-8.
"""
@debug_data_pipeline.debug_pipeline
def _convert_to_unicode_str(stream):
for example in stream:
if isinstance(example, (list, tuple)):
new_example = []
for i, x in enumerate(example):
if keys is None or i in keys:
new_example.append(_to_unicode(x))
else:
new_example.append(x)
output = tuple(new_example)
yield output
elif isinstance(example, dict):
new_example = {}
for k in example:
if keys is None or k in keys:
new_example[k] = _to_unicode(example[k])
else:
new_example[k] = example[k]
yield new_example
else:
output = _to_unicode(example)
yield output
return _convert_to_unicode_str
def vocab_size(vocab_type='subword',
vocab_file=None,
vocab_dir=None,
n_reserved_ids=0):
"""Returns the size of the vocabulary (number of symbols used).
This function can be used to set the size of the final layers of a model that
needs to predict symbols from a given vocabulary. More precisely, if this
function returns N then the last layer size should be set to at least N (it
can be more). Note that this function does take reserved IDs into account.
Args:
vocab_type: Type of vocabulary, one of: 'subword', 'sentencepiece', 'char'.
vocab_file: Name of the vocabulary file.
vocab_dir: Directory which contains the vocabulary file.
n_reserved_ids: An int, offset added so 0, ..., n_reserved_ids-1 are unused.
Returns:
An integer, the number of symbols used (including reserved IDs).
"""
vocab = _get_vocab(vocab_type, vocab_file, vocab_dir)
return vocab.vocab_size + n_reserved_ids
def _get_vocab(vocab_type='subword', vocab_file=None, vocab_dir=None,
extra_ids=0):
"""Gets the vocabulary object for tokenization; see tokenize for details."""
if vocab_type not in [
'char', 'subword', 'sentencepiece', 'bert', 'bert-lowercase'
]:
raise ValueError(
'vocab_type must be "subword", "char", "sentencepiece", "bert" or "bert-lowercase" '
f'but got {vocab_type}')
if vocab_type == 'char':
# Note that we set num_reserved_ids=0 below. We could instead pass
# the value n_reserved_ids from tokenize here -- ByteTextEncoder does
# exactly the same thing as tokenize above, ie., adds num_reserved_ids.
return text_encoder.ByteTextEncoder(num_reserved_ids=0)
vocab_dir = vocab_dir or 'gs://trax-ml/vocabs/'
path = os.path.join(vocab_dir, vocab_file)
if vocab_type == 'subword':
return text_encoder.SubwordTextEncoder(path)
if vocab_type == 'bert':
return text_encoder.BertEncoder(path, do_lower_case=False)
if vocab_type == 'bert-lowercase':
return text_encoder.BertEncoder(path, do_lower_case=True)
assert vocab_type == 'sentencepiece'
return t5_data().SentencePieceVocabulary(sentencepiece_model_file=path,
extra_ids=extra_ids)
# Makes the function accessible in gin configs, even with all args denylisted.
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def cifar10_no_augmentation_preprocess(dataset, training):
del training
def cast_image(features, targets):
features['image'] = tf.cast(features['image'], tf.float32) / 255.0
return features, targets
dataset = dataset.map(cast_image)
return dataset
def _cifar_augment_image(image):
"""Image augmentation suitable for CIFAR-10/100.
As described in https://arxiv.org/pdf/1608.06993v3.pdf (page 5).
Args:
image: a Tensor.
Returns:
Tensor of the same shape as image.
"""
image = tf.image.resize_with_crop_or_pad(image, 40, 40)
image = tf.image.random_crop(image, [32, 32, 3])
image = tf.image.random_flip_left_right(image)
return image
# Makes the function accessible in gin configs, even with all args denylisted.
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def cifar10_augmentation_preprocess(dataset, training):
"""Preprocessing for cifar10 with augmentation (see below)."""
def augment(features, targets):
features['image'] = _cifar_augment_image(features['image'])
return features, targets
def cast_image(features, targets):
features['image'] = tf.cast(features['image'], tf.float32) / 255.0
return features, targets
if training:
dataset = dataset.map(augment)
dataset = dataset.map(cast_image)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def cifar10_augmentation_flatten_preprocess(dataset,
training,
predict_image_train_weight=0.01):
"""Preprocessing for cifar10 that flattens it and appends targets."""
def augment(features, targets):
features['image'] = _cifar_augment_image(features['image'])
return features, targets
def flatten_image(features, targets):
"""Flatten the image."""
img = features['image']
flat = tf.cast(tf.reshape(img, [-1]), tf.int64)
tgt = tf.expand_dims(targets, axis=0)
flat_with_target = tf.concat([flat, tgt], axis=0)
new_features = {}
new_features['image'] = flat_with_target
predict_image_weight = predict_image_train_weight if training else 0.0
mask_begin = tf.ones_like(flat)
mask_begin = tf.cast(mask_begin, tf.float32) * predict_image_weight
mask_end = tf.cast(tf.ones_like(tgt), tf.float32)
new_features['mask'] = tf.concat([mask_begin, mask_end], axis=0)
return new_features, flat_with_target
if training:
dataset = dataset.map(augment)
dataset = dataset.map(flatten_image)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def downsampled_imagenet_flatten_bare_preprocess(dataset, training):
"""Preprocessing for downsampled_imagenet.
Args:
dataset: the dataset.
training: unused option.
Returns:
Flattened dataset.
Preprocessing for downsampled_imagenet 32x32 and 64x64 generation from
http://arxiv.org/abs/1601.06759 (page 8).
"""
del training
def flatten_image(features):
img = features['image']
flat = tf.cast(tf.reshape(img, [-1]), tf.int64)
new_features = {'image': flat}
return new_features
return dataset.map(flatten_image)
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def concat_preprocess(dataset, training, pad_symbol=0):
"""Pre-processing function that concatenates input and target for LM."""
del training
def concat(features, targets):
inp = features['inputs']
pad = tf.expand_dims(tf.zeros_like(inp[0]) + pad_symbol, axis=0)
concat = tf.concat([pad, inp, pad, targets], axis=0)
# Note: we're updating existing features dictionary here, so make sure
# it is not re-used in some other ways outside of this function.
features['inputs'] = concat
return features, concat
dataset = dataset.map(concat)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def squeeze_targets_preprocess(dataset, training):
"""Pre-processing function that squeezes last axis of targets."""
del training
def squeeze(features, targets):
if targets.shape[-1] == 1:
targets = tf.squeeze(targets, axis=-1)
return features, targets
dataset = dataset.map(squeeze)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def lm1b_preprocess(dataset,
training,
max_target_length=-1,
max_eval_target_length=-1):
"""Preprocessing for LM1B: filter out targets exceeding maximum length."""
def target_right_length(_, target):
return tf.less(tf.shape(target)[0], max_target_length + 1)
def eval_target_right_length(_, target):
return tf.less(tf.shape(target)[0], max_eval_target_length + 1)
if max_target_length > 0 and training:
dataset = dataset.filter(target_right_length)
if max_eval_target_length > 0 and not training:
dataset = dataset.filter(eval_target_right_length)
return dataset
# TODO(lukaszkaiser): find a single more abstract way of text pre-processing.
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def wmt_preprocess(dataset, training, max_length=-1, max_eval_length=-1):
"""Preprocessing for LM1B: filter out targets exceeding maximum length."""
def train_right_length(example, target):
l = tf.maximum(tf.shape(example['inputs'])[0], tf.shape(target)[0])
return tf.less(l, max_length + 1)
def eval_right_length(example, target):
l = tf.maximum(tf.shape(example['inputs'])[0], tf.shape(target)[0])
return tf.less(l, max_eval_length + 1)
if max_length > 0 and training:
dataset = dataset.filter(train_right_length)
if max_eval_length > 0 and not training:
dataset = dataset.filter(eval_right_length)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def wmt_concat_preprocess(dataset, training, max_length=-1, max_eval_length=-1):
"""Preprocessing for WMT: filter exceeding maximum length and concatenate."""
dataset = wmt_preprocess(dataset, training, max_length, max_eval_length)
def concat_and_add_mask(features, targets):
inp = features['inputs']
pad = tf.expand_dims(tf.zeros_like(inp[0]), axis=0)
concat = tf.concat([inp, pad, targets], axis=0)
mask = tf.concat([tf.zeros_like(inp), pad, tf.ones_like(targets)], axis=0)
features['inputs'] = concat
features['mask'] = mask
return features, concat
dataset = dataset.map(concat_and_add_mask)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def lm_token_preprocessing(dataset, training):
"""Concatenates inputs, 0, targets, with masking only for targets."""
del training
def concat_and_add_mask(x):
inp = x['inputs']
targets = x['targets']
pad = tf.expand_dims(tf.zeros_like(inp[0]), axis=0)
concat = tf.concat([inp, pad, targets], axis=0)
mask = tf.concat([tf.zeros_like(inp), pad, tf.ones_like(targets)], axis=0)
x['inputs'] = concat
x['targets'] = concat
x['mask'] = mask
return x
dataset = dataset.map(concat_and_add_mask)
return dataset
@gin.configurable(module='trax.data', denylist=['hparams'])
def bair_robot_pushing_hparams(hparams=None,
video_num_input_frames=1,
video_num_target_frames=15):
if hparams is not None:
hparams.video_num_input_frames = video_num_input_frames
hparams.video_num_target_frames = video_num_target_frames
else:
return video_num_input_frames, video_num_target_frames
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def bair_robot_pushing_preprocess(dataset, training):
"""Pre-processing function that concatenates input and target frames."""
del training
def concat_and_add_mask(features, targets):
"""Concatenate input and output frames to form a language modeling setup."""
inp = features['inputs']
concat = tf.concat([inp, targets], axis=0)
mask = tf.concat([tf.zeros_like(inp), tf.ones_like(targets)], axis=0)
concat = tf.reshape(concat, (-1,))
mask = tf.reshape(mask, (-1,))
concat = tf.cast(concat, tf.int32)
mask = tf.cast(mask, tf.float32)
features['inputs'] = features['targets'] = concat
features['mask'] = mask
return features, concat
dataset = dataset.map(concat_and_add_mask)
return dataset
def sentencepiece_tokenize(stream, spm_path=None, extra_ids=0):
"""Sentencepiece tokenization."""
spm_path = spm_path or t5_data().DEFAULT_SPM_PATH
vocab_file = os.path.basename(spm_path)
vocab_dir = os.path.dirname(spm_path)
vocab = _get_vocab(vocab_type='sentencepiece',
vocab_file=vocab_file,
vocab_dir=vocab_dir,
extra_ids=extra_ids)
for example in stream:
# example could either be str or (str,)
if isinstance(example, tuple):
example = example[0]
yield np.array(vocab.encode(example))
@gin.configurable(module='trax.data')
def SentencePieceTokenize( # pylint: disable=invalid-name
spm_path=None,
extra_ids=0):
"""Returns a function that maps text to integer arrays."""
return lambda g: sentencepiece_tokenize( # pylint: disable=g-long-lambda
g,
spm_path=spm_path,
extra_ids=extra_ids)
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def c4_preprocess(dataset,
training,
max_target_length=-1,
tokenization=None,
spm_path=None):
"""Pre-processing function for C4 dataset."""
del training
def unicode_decode_chars(features, targets):
targets = tf.strings.unicode_decode(features['text'], 'UTF-8')
targets = tf.cast(targets, tf.int64)
features['targets'] = targets
features['inputs'] = targets
return (features, targets)
def spc_tokenize(tokenizer, features, targets):
del targets
tokenized_text = tokenizer.tokenize(features['text'])
features['targets'] = tf.cast(tokenized_text, tf.int64)
features['inputs'] = features['targets']
return features, features['targets']
if tokenization == 'spc':
spm_path = spm_path or t5_data().DEFAULT_SPM_PATH
with tf.compat.v1.gfile.GFile(spm_path, 'rb') as f:
spc_model = f.read()
tokenizer = tf_text.SentencepieceTokenizer(model=spc_model)
dataset = dataset.map(functools.partial(spc_tokenize, tokenizer))
else:
dataset = dataset.map(unicode_decode_chars)
def target_right_length(_, target):
return tf.less(tf.shape(target)[0], max_target_length + 1)
if max_target_length > 0:
dataset = dataset.filter(target_right_length)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def c4_bare_preprocess_fn(dataset,
training=True,
spm_path=None,
copy_pretokenized=True,
sequence_length=None):
"""Returns a dataset that contains 'inputs' and 'targets' from C4."""
# Set target key to be equal to the text content.
dataset = t5_data().preprocessors.rekey(
dataset, key_map={
'targets': 'text',
'inputs': None
})
# Vocabulary for tokenization.
extra_ids = 0
vocab = t5_data().SentencePieceVocabulary(
sentencepiece_model_file=spm_path or t5_data().DEFAULT_SPM_PATH,
extra_ids=extra_ids)
feature = t5_data().Feature(vocab)
output_features = {'targets': feature, 'inputs': feature}
# Tokenize the targets.
keys = output_features
def encode_string_features_fn(features):
"""Encode all specified feature that are strings and return a dictionary.
Args:
features: a dictionary
Returns:
a dictionary
"""
ret = {}
for k, v in features.items():
if k in keys and v.dtype == tf.string:
if copy_pretokenized:
ret['%s_pretokenized' % k] = v
v = tf.cast(output_features[k].vocabulary.encode_tf(v), tf.int64)
ret[k] = v
return ret
dataset = dataset.map(
encode_string_features_fn,
num_parallel_calls=tf.data.experimental.AUTOTUNE)
# Preprocess the tokens - the exact preprocessors are set via gin.
dataset = t5_data().preprocessors.unsupervised(
dataset, sequence_length=sequence_length, output_features=output_features)
# Add EOS.
dataset = add_eos_to_output_features(dataset, training)
# Truncate and then pad the examples -- all examples have the same shape.
dataset = truncate_dataset_on_len(dataset, training, sequence_length, True)
dataset = pad_dataset_to_length(dataset, training, sequence_length)
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def filter_dataset_on_len(dataset,
training,
len_map=None,
filter_on_eval=False):
"""Filters a dataset of lengths given in `len_map`.
Args:
dataset: `tf.data.Dataset` the dataset to filter.
training: bool, true if we are in training mode.
len_map: optional dict of str to (int, int). We filter examples where a
feature's size is beyond the specified bounds. Ex:
{'inputs': (1, 512), 'targets': (64, 128)} will keep only those examples
where 1 <= len(inputs) <= 512 and 64 <= len(targets) <= 128.
filter_on_eval: bool if true, we will filter in eval mode also.
Returns:
a filtered `tf.data.Dataset`.
"""
if (len_map is None) or (not training and not filter_on_eval):
return dataset
assert isinstance(len_map, dict)
for k, bounds in len_map.items():
# pylint: disable=cell-var-from-loop
# TODO(afrozm): Investigate `cell-var-from-loop` - since this is WAI and
# there is a test too.
def within_bounds(x, key, len_bounds):
size = tf.shape(x[key])[0]
min_len, max_len = len_bounds
return (min_len <= size) and (size <= max_len)
dataset = dataset.filter(lambda x: within_bounds(x, k, bounds))
# pylint: enable=cell-var-from-loop
return dataset
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def truncate_dataset_on_len(dataset,
training,
len_map=None,
truncate_on_eval=False):
"""Truncates features in an example to lengths given in `len_map`.
Args:
dataset: `tf.data.Dataset` the dataset to filter.
training: bool, true if we are in training mode.
len_map: optional dict of str to int, we truncate examples where a feature's
size is beyond the max. Ex: {'inputs': 512, 'targets': 64} will truncate
examples to be within those bounds.
truncate_on_eval: bool if true, we will truncate in eval mode also.
Returns:
a filtered `tf.data.Dataset`.
"""
if (len_map is None) or (not training and not truncate_on_eval):
return dataset
assert isinstance(len_map, dict)
def truncate_example(x):
for key, max_len in len_map.items():
x_len = tf.shape(x[key])[0]
if x_len > max_len:
x[key] = x[key][:max_len, ...]
return x
return dataset.map(truncate_example)
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def pad_dataset_to_length(dataset, training, len_map=None):
"""Pad features less than specified length to specified length."""
del training
if len_map is None:
return dataset
def pad_to_len(x):
for key, max_len in len_map.items():
x_shape = tf.shape(x[key])
x_len = x_shape[0]
if x_len < max_len:
pad_shape = [
max_len - x_len,
]
zeros = tf.zeros(pad_shape, dtype=x[key].dtype)
x[key] = tf.concat([x[key], zeros], 0)
return x
return dataset.map(pad_to_len)
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def add_eos_to_output_features(dataset,
training,
output_features='targets',
eos=1):
"""Adds `EOS` to all features in `output_features`."""
del training
if not isinstance(output_features, (list, tuple)):
output_features = [output_features]
def add_eos(x):
for output_feature in output_features:
x[output_feature] = tf.concat([x[output_feature], [eos]], axis=0)
return x
return dataset.map(add_eos)
@gin.configurable(module='trax.data', denylist=['dataset', 'training'])
def generic_text_dataset_preprocess_fn(dataset,
training=True,
text_preprocess_fns=None,
token_preprocess_fns=None,
spm_path=None,
copy_pretokenized=False,
debug_print_examples=False,
debug_print_examples_rate=0.01):
"""Pre-processes, tokenizes and post-processes a `tf.data.Dataset`.
Args:
dataset: `tf.data.Dataset` to process.
training: boolean, set to True if training, False otherwise.
text_preprocess_fns: None or list of callables: `tf.data.Dataset`, bool ->
`tf.data.Dataset` this operates before tokenization. Typically used to
select which fields we want to learn over or change something into "text
to text" form.
token_preprocess_fns: None or list of callables: `tf.data.Dataset`, bool ->
`tf.data.Dataset`, this operates after tokenization. Since this can view
the tokenized fields, this can be used to filter on length etc.
spm_path: None or str, path to a sentencepiece model to use for tokenization
by default uses the 32k vocabulary from T5.
copy_pretokenized: bool, if True retains the original fields after
tokenization.
debug_print_examples: bool, if True this prints examples to the logging
stream for inspection, both before and after tokenization.
debug_print_examples_rate: float, [0, 1.0], on average this fraction of
dataset examples will be printed out in each phase i.e. pre and post
tokenization.
Returns:
a `tf.data.Dataset` with all the preprocessing and tokenization performed.
"""
# The assumption is that `text_preprocess_fns` finally gives us a dataset
# which has `inputs` and `targets`.
if text_preprocess_fns is not None:
for text_preprocess_fn in text_preprocess_fns:
dataset = text_preprocess_fn(dataset, training)
# Print debugging examples if needed before tokenization.
if debug_print_examples:
def print_examples(x):
if np.random.uniform() < debug_print_examples_rate:
tf.print(x, output_stream=logging.info)
return x
dataset = dataset.map(print_examples)
# Vocabulary for tokenization.
extra_ids = 0
vocab = t5_data().SentencePieceVocabulary(
sentencepiece_model_file=spm_path or t5_data().DEFAULT_SPM_PATH,
extra_ids=extra_ids)
feature = t5_data().Feature(vocab)
output_features = {'targets': feature, 'inputs': feature}
# Tokenize the inputs and targets.
dataset = t5_data().preprocessors.tokenize(
dataset, output_features, copy_pretokenized=copy_pretokenized)
# Apply the token-preprocessors.
if token_preprocess_fns is not None:
for token_preprocess_fn in token_preprocess_fns:
dataset = token_preprocess_fn(dataset, training)
if debug_print_examples:
def print_examples_and_shapes(x):
if np.random.uniform() < debug_print_examples_rate:
tf.print(
{
'inputs_shape': tf.size(x['inputs']),
'targets_shape': tf.size(x['targets']),
'inputs': x['inputs'],
'targets': x['targets'],
},
output_stream=logging.info)
return x
dataset = dataset.map(print_examples_and_shapes)
return dataset
@gin.configurable(module='trax.data')
def get_t5_preprocessor_by_name(name=None, fn_kwargs=None):
"""Returns a closure of any T5 preprocessor function with its arguments.
The main use-case is to use this (with gin scopes) to make any preprocessor
function available in a gin file to configure and use.
See: `TFInputs.test_gin_configurable_preprocessors`
Args:
name: str, name of the preprocessor function to configure.
fn_kwargs: optional dictionary, the arguments to configure, these will be
partially applied to the function given by `name`.
Returns:
a closure of the preprocessor function along with its arguments, this
function takes two arguments only, dataset and boolean training and ignores
the training and calls the t5 processor with the dataset (and closed over
arguments only).
"""
assert name is not None
f = getattr(t5_data().preprocessors, name)
if fn_kwargs is not None:
f = functools.partial(f, **fn_kwargs)
return lambda ds, unused_training: f(ds)
def download_and_prepare(dataset_name, data_dir):
"""Downloads and prepares T2T or TFDS dataset.
Args:
dataset_name: tfds dataset or t2t problem name prefixed by 't2t_'.
data_dir: location of existing dataset or None.
Returns:
data_dir: path string of downloaded data.
"""
if not data_dir:
data_dir = os.path.expanduser('~/tensorflow_datasets/')
dl_dir = os.path.join(data_dir, 'download')
logging.info(
'No dataset directory provided. '
'Downloading and generating dataset for %s inside data directory %s '
'For large datasets it is better to prepare datasets manually!',
dataset_name, data_dir)
if dataset_name.startswith('t2t_'):
# Download and run dataset generator for T2T problem.
data_dir = os.path.join(data_dir, dataset_name)
tf.io.gfile.makedirs(data_dir)
tf.io.gfile.makedirs(dl_dir)
t2t_problems().problem(dataset_name[len('t2t_'):]).generate_data(
data_dir, dl_dir)
else:
# Download and prepare TFDS dataset.
tfds_builder = tfds.builder(dataset_name)
tfds_builder.download_and_prepare(download_dir=dl_dir)
else:
data_dir = os.path.expanduser(data_dir)
return data_dir
def BertSingleSentenceInputs(batch, # pylint: disable=invalid-name
labeled=True,
cls_id=101,
sep_id=102):
"""Prepares inputs for BERT: add [SEP], [CLS] and create embeddings."""
if labeled:
for sent1, label in batch:
value_vector = np.concatenate(([cls_id], sent1, [sep_id]))
segment_embs = np.zeros(sent1.shape[0] + 2, dtype=np.int32)
yield value_vector, segment_embs, segment_embs, label, np.int32(1)
else:
for (sent1,) in batch: # row is a tuple with 1 element
value_vector = np.concatenate(([cls_id], sent1, [sep_id]))
segment_embs = np.zeros(sent1.shape[0] + 2, dtype=np.int32)
yield value_vector, segment_embs, segment_embs
def BertDoubleSentenceInputs(batch, # pylint: disable=invalid-name
labeled=True,
cls_id=101,
sep_id=102):
"""Prepares inputs for BERT models by adding [SEP] and [CLS] tokens and creating segment embeddings."""
if labeled:
for sent1, sent2, label in batch:
value_vector = np.concatenate(
([cls_id], sent1, [sep_id], sent2, [sep_id]))
segment_embs = np.zeros(
sent1.shape[0] + sent2.shape[0] + 3, dtype=np.int32)
second_sent_start = sent1.shape[0] + 2
segment_embs[second_sent_start:] = 1
yield value_vector, segment_embs, segment_embs, label, np.int32(1)
else:
for sent1, sent2 in batch:
value_vector = np.concatenate(
([cls_id], sent1, [sep_id], sent2, [sep_id]))
segment_embs = np.zeros(
sent1.shape[0] + sent2.shape[0] + 3, dtype=np.int32)
second_sent_start = sent1.shape[0] + 2
segment_embs[second_sent_start:] = 1
yield value_vector, segment_embs, segment_embs
@gin.configurable(module='trax.data')
def CreateBertInputs(double_sentence=True, # pylint: disable=invalid-name
labeled=True,
cls_id=101,
sep_id=102):
bert_inputs_fn = BertDoubleSentenceInputs if double_sentence else BertSingleSentenceInputs
return functools.partial(
bert_inputs_fn, labeled=labeled, cls_id=cls_id, sep_id=sep_id)
@gin.configurable(module='trax.data')
def mask_random_tokens(batch,
explicit_vocab_size=30522,
masking_prob=0.15,
cls_id=101,
sep_id=102,
mask_id=103,
vocab_start_id=999):
"""Prepares input for the masking task.
Preparation consist in masking masking_prob percentage of non-special tokens
at each input row; round(masking_prob * num_nonspecial_tokens) random tokens
are selected out of which each token is either
- replaced with [MASK] token with 80% probability,
- replaced with random token with 10% probability,
- or unchanged with 10%.
The implentation is based on
https://github.com/google-research/bert/blob/master/create_pretraining_data.py#L342
Examples:
- batch is a stream with each row having tuple (token_ids,). Function yields
rows of form (modified_token_ids, original_tokens, token_weights), where
modified_token_ids have [MASK] tokens or random tokens according to the
procedure described above.
- batch is a stream with each row having tuple (token_ids, segment_embeddings,
nsp_label, nsp_weight).Function yields rows of form (modified_token_ids,
segment_embeddings, nsp_label, nsp_weight, original_tokens, token_weights).
Args:
batch: stream of inputs. Each row in the stream is a tuple which first
element is an array of tokens
explicit_vocab_size: the total size of the vocabulary.
masking_prob: Determines percent of non-special tokens to be selected for
masking.
cls_id: id of the special CLS token.
sep_id: id of the special SEP token.
mask_id: id of the special MASK token.
vocab_start_id: id of first non-special token in the vocabulary.
Yields:
a stream with tokens masked for MLM training and 2 appended arrays:
- original tokens: a copy of original tokens used as a label for mlm
training
- token_weights: weights distributed uniformly over selected tokens (sum
is 1). Other tokens have 0 weight.
"""
for token_ids, *row_rest in batch:
original_tokens = token_ids.copy()
# choose tokens for prediction. Chooses 0.15 of
# all non-special tokens
is_special_token = np.logical_or(token_ids == cls_id,
token_ids == sep_id) # CLS and SEP tokens
is_special_token = np.logical_or(is_special_token,
token_ids == 0) # padding
viable_ids = np.arange(token_ids.shape[0])[~is_special_token]
num_to_sample = round(masking_prob * viable_ids.shape[0])
if num_to_sample == 0:
# sentence is too short to select given percentage of tokens to mask
continue
candidate_ids = np.random.choice(viable_ids, num_to_sample, replace=False)
# create weights
token_weights = np.zeros(token_ids.shape)
token_weights[candidate_ids] = 1 / candidate_ids.shape[0]
prob_scores = np.random.random(candidate_ids.shape)
# change 80 % of tokens to [MASK]
mask_token_ids = candidate_ids[prob_scores < 0.8]
token_ids[mask_token_ids] = mask_id
# change 10% of tokens to random token
random_token_ids = candidate_ids[(0.8 <= prob_scores) & (prob_scores < 0.9)]
token_ids[random_token_ids] = np.random.randint(vocab_start_id,
explicit_vocab_size,
random_token_ids.shape[0])
# rest (10%) is left unchaged
yield (token_ids, *row_rest, original_tokens, token_weights)
@gin.configurable(module='trax.data')
def BertNextSentencePredictionInputs(dataset_name, # pylint: disable=invalid-name
data_dir=None,
text_key='text',
train=True,
shuffle_size=50000):
"""Defines a stream for the next sentence prediction task."""
stream = TFDS(
dataset_name,
data_dir=data_dir,
tfds_preprocess_fn=functools.partial(
t5_data().preprocessors.next_sentence_prediction,
text_key=text_key,
label_sentences=True,
buffer_size=shuffle_size),
keys=['inputs', 'targets'],
train=train)
def split_stream(generator=None):
# split string with 'sentence1:' and 'sentence2:' into two separate strings
for text, target in stream(generator):
text_str = str(text)[:-1] # removes last '"' which is always at the end
sentences = text_str.split('sentence1: ')[1].split(' sentence2: ')
if len(sentences) != 2:
# 'sentence2:' appeared in the text and got mixed up with the label
continue
sent1, sent2 = sentences
yield sent1, sent2, target == 'next'
return split_stream
@gin.configurable(module='trax.data')
def CorpusToRandomChunks(dataset_name, num_tokens=512, train=True): # pylint: disable=invalid-name
return TFDS(
dataset_name,
tfds_preprocess_fn=functools.partial(
t5_data().preprocessors.random_split_text,
max_words_per_segment=num_tokens),
train=train,
keys=['text'])
_GLUE_KEYS = {
'cola': ('sentence',),
'sst2': ('sentence',),
'mrpc': ('sentence1', 'sentence2'),
'qqp': ('question1', 'question2'),
'stsb': ('sentence1', 'sentence2'),
'mnli': ('premise', 'hypothesis'),
'qnli': ('question', 'sentence'),
'rte': ('sentence1', 'sentence2'),
'wnli': ('sentence1', 'sentence2'),
}
# Labels inferred from the T5 paper: https://arxiv.org/pdf/1910.10683.pdf
_GLUE_LABELS = {
'cola': ('unacceptable', 'acceptable'),
'sst2': ('negative', 'positive'),
'mrpc': ('not_equivalent', 'equivalent'),
'qqp': ('not_duplicate', 'duplicate'),
'stsb': ('sentence1', 'sentence2'),
'mnli': ('entailment', 'neutral', 'contradiction'),
'qnli': ('entailment', 'not_entailment'),
'rte': ('entailment', 'not_entailment'),
'wnli': ('sentence1', 'sentence2'),
}
# Defining separate <Foo>TrainStream and <Foo>EvalStream functions (below)
# makes gin configuration expressions more direct. A single gin line can
# configure each; for example:
#
# BertGlueTrainStream.benchmark= 'mnli'
# BertGlueEvalStream.benchmark = 'mnli'
# pylint: disable=invalid-name
@gin.configurable(module='trax.data')
def BertGlueTrainStream(benchmark=gin.REQUIRED):
"""Returns a Bert-preprocessed training stream for ``benchmark``.
Args:
benchmark: Simple lower-case name of a GLUE benchmark, e.g., ``'cola'``,
``'mnli'``, ``'rte'``.
"""
return _BertGlueDataStream(benchmark + '_t')
# GLUE evals need special handling because one eval in particular, MNLI, has
# two different eval sets: "matched" and "mismatched". The code in this module
# distinguishes between the two using the suffixes '_e' versus '_e2',
# respectively.
def _ensure_eval_suffix(benchmark):
"""Returns a string ending in an eval suffix; adds ``'_e'`` suffix if needed.
Args:
benchmark: Name of a benchmark or task, that might already include an
eval-indicating suffix (``'_e'`` or ``'_e2'``).
"""
if benchmark.endswith('_e') or benchmark.endswith('_e2'):
return benchmark
else:
return benchmark + '_e'
@gin.configurable(module='trax.data')
def BertGlueEvalStream(benchmark=gin.REQUIRED):
"""Returns a Bert-preprocessed eval data stream for ``benchmark``.
Args:
benchmark: Simple lower-case name of a GLUE benchmark, e.g., ``'cola'``,
``'mnli'``, ``'rte'``. If the benchmark includes an alternate
eval (e.g., MNLI's "mismatched" eval/validation split), you can
specify it with an ``'_e2'`` suffix, e.g., ``'mnli_e2'``.
"""
return _BertGlueDataStream(_ensure_eval_suffix(benchmark))
def _BertGlueDataStream(benchmark_id):
"""Returns a Bert-preprocessed data stream for ``benchmark_id``.
Args:
benchmark_id: String that indicates the name and data split of a GLUE
benchmark. Data splits are indicated as underscore suffixes, e.g.,
``'cola_t'`` (Cola benchmark, training split), ``'rte_e'`` (RTE
benchmark, eval/validation split), and ``'mnli_e2'`` (MNLI benchmark,
alternate "mismatched" eval/validation split).
"""
benchmark_id = _ensure_eval_suffix(benchmark_id)
benchmark, split = benchmark_id.rsplit('_', 1)
glue_data = TFDS(f'glue/{benchmark}',
keys=_GLUE_KEYS[benchmark],
train=(split == 't'),
use_alt_eval=(split == 'e2'))
return data.Serial(
glue_data,
data.Tokenize(),
data.CreateBertInputs(),
data.Shuffle(),
data.PadToLength(),
data.TruncateToLength(),
data.Batch(),
)
@gin.configurable(module='trax.data')
def T5GlueTrainStream(benchmark=gin.REQUIRED):
"""Returns a T5-preprocessed training data stream for ``benchmark``.
Args:
benchmark: Simple lower-case name of a GLUE benchmark, e.g., ``'cola'``,
``'mnli'``, ``'rte'``.
"""
return _T5GlueDataStream(benchmark + '_t')
@gin.configurable(module='trax.data')
def T5GlueTrainStreamsParallel(benchmark_list=gin.REQUIRED,
counters=None,
reweight_by_minimum=False,
gradually_reweight=False):
"""Returns a parallel set of training streams, based on ``benchmark_list``.
Args:
benchmark_list: List of simple lower-case names of GLUE benchmarks, e.g.,
``'cola'``, ``'mnli'``, ``'rte'``.
counters: a list of counters to be passed to data.Parallel, e.g.,
[8551, 392702, 2490] would be a reasonable counterpart to
benchmark_list = ["cola", "mnli", "rte"], see
https://github.com/google-research/text-to-text-transfer-transformer/blob/master/t5/data/glue_utils.py#L42
for more details on counters.
reweight_by_minimum: divide by the minimal counter.
gradually_reweight: a more refined reweighting policy, see inputs.py
for more details.
"""
stream_list = list(map(T5GlueTrainStream, benchmark_list))
return data.Parallel(
stream_list,
counters=counters,
reweight_by_minimum=reweight_by_minimum,
gradually_reweight=gradually_reweight)()
@gin.configurable(module='trax.data')
def T5GlueEvalStream(benchmark=gin.REQUIRED):
"""Returns a T5-preprocessed eval data stream for ``benchmark``.
Args:
benchmark: Simple lower-case name of a GLUE benchmark, e.g., ``'cola'``,
``'mnli'``, ``'rte'``. If the benchmark includes an alternate
eval (e.g., MNLI's "mismatched" eval/validation split), you can
specify it with an ``'_e2'`` suffix, e.g., ``'mnli_e2'``.
"""
return _T5GlueDataStream(_ensure_eval_suffix(benchmark))
@gin.configurable(module='trax.data')
def T5GlueEvalStreamsParallel(benchmark_list=gin.REQUIRED):
"""Returns a parallel set of T5 eval streams, based on ``benchmark_list``.
Args:
benchmark_list: List of strings, each of which is a simple lower-case name
of a GLUE benchmark, e.g., ``'cola'``, ``'mnli'``, ``'rte'``. If a
benchmark includes an alternate eval (e.g., MNLI's "mismatched"
eval/validation split), you can specify it with an ``'_e2'`` suffix,
e.g., ``'mnli_e2'``.
"""
stream_list = list(map(T5GlueEvalStream, benchmark_list))
return data.Parallel(stream_list)()
def _T5GlueDataStream(benchmark_id, t5_tokenization=False):
"""Returns a T5-preprocessed data stream for ``benchmark_id``.
Args:
benchmark_id: String that indicates the name and data split of a GLUE
benchmark. Data splits are indicated as underscore suffixes, e.g.,
``'cola_t'`` (Cola benchmark, training split), ``'rte_e'`` (RTE
benchmark, eval/validation split), and ``'mnli_e2'`` (MNLI benchmark,
alternate "mismatched" eval/validation split).
t5_tokenization: if true, then use t5_tokenization.
"""
return data.Serial(
_t5_glue_data_split(benchmark_id)
if t5_tokenization else _t5_glue_data_split_no_token(benchmark_id),
data.Tokenize(),
data.Shuffle(),
data.PadToLength(),
data.TruncateToLength(),
data.Batch(),
)
@gin.configurable(module='trax.data')
def T5GlueEvalTasks(benchmark_list=gin.REQUIRED):
"""Returns a list of T5 GLUE eval tasks, based on ``benchmark_list``.
Args:
benchmark_list: List of strings, each of which indicates the name and
data split of a GLUE benchmark. Data splits are indicated as underscore
suffixes, e.g., ``'cola_t'`` (Cola benchmark, training split),
``'rte_e'`` (RTE benchmark, eval/validation split), and ``'mnli_e2'``
(MNLI alternate "mismatched" eval/validation split).
"""
task_list = list(map(_T5GlueEvalTask, benchmark_list))
return task_list
def _T5GlueEvalTask(benchmark_id):
"""Returns a T5 GLUE eval task, based on ``benchmark_id``."""
eval_data = T5GlueEvalStream(benchmark_id)
benchmark_id = _ensure_eval_suffix(benchmark_id)
metrics = [tl.WeightedCategoryAccuracy(), tl.SequenceAccuracy()]
benchmark, split = benchmark_id.rsplit('_', 1)
if benchmark == 'cola':
name_upper = 'Cola'
elif benchmark == 'mnli':
name_upper = 'MNLI_matched' if split == 'e' else 'MNLI_mismatched'
else:
name_upper = benchmark.upper()
return supervised.training.EvalTask(
eval_data(),
metrics,
metric_names=[f'{name_upper} accuracy',
f'{name_upper} sequence accuracy'])
def _t5_glue_data_split_no_token(benchmark_id):
"""Returns a GLUE data split prepared with the standard T5 preprocessor."""
benchmark, split = _t5_glue_benchmark_and_split(benchmark_id)
dataset = tfds.load(name=f'glue/{benchmark}', split=split)
processed_dataset = t5_data().preprocessors.glue( # pylint: disable=g-long-lambda
dataset,
benchmark_name=benchmark,
label_names=_GLUE_LABELS[benchmark])
def stream_of_inputs_targets_weights(generator=None):
del generator
while True:
for example in processed_dataset:
input_values = example['inputs'].numpy()
target_values = example['targets'].numpy()
yield (input_values,
target_values,
jnp.array([1] * len(target_values)))
return stream_of_inputs_targets_weights
def _t5_glue_data_split(benchmark_id):
"""Returns a GLUE data split prepared with the standard T5 preprocessor."""
benchmark, split = _t5_glue_benchmark_and_split(benchmark_id)
dataset = tfds.load(name=f'glue/{benchmark}', split=split)
processed_dataset = generic_text_dataset_preprocess_fn(
dataset,
spm_path=t5_data().DEFAULT_SPM_PATH,
text_preprocess_fns=[
lambda ds, training: t5_data().preprocessors.glue( # pylint: disable=g-long-lambda
ds,
benchmark_name=benchmark,
label_names=_GLUE_LABELS[benchmark])
],
copy_pretokenized=True,
debug_print_examples=True,
debug_print_examples_rate=0.05)
dataset_as_numpy = tfds.as_numpy(processed_dataset)
def stream_of_inputs_targets_weights(generator=None):
del generator
while True:
for example in dataset_as_numpy:
input_values = example['inputs']
target_values = example['targets']
yield (jnp.array(input_values),
jnp.array(target_values),
jnp.array([1] * len(target_values)))
return stream_of_inputs_targets_weights
def _t5_glue_benchmark_and_split(benchmark_id):
benchmark, mode = benchmark_id.rsplit('_', 1)
if mode == 't':
split = 'train'
elif benchmark == 'mnli':
split = 'validation_mismatched' if mode == 'e2' else 'validation_matched'
else:
split = 'validation'
return benchmark, split
# pylint: enable=invalid-name
def compute_single_result(op_name, num_args):
"""An implementation of the most popular ops from the MathQA dataset."""
# See https://gitlab.cs.washington.edu/amini91/mathqa-categorization/
# and specfically line 142 and following in new_DataStructure.py
# for an implementation which covers more details.
if op_name == 'add':
return num_args[0] + num_args[1]
elif op_name == 'circle_arc':
return num_args[0] / 360 * math.pi * 2 * num_args[1]
elif op_name == 'circle_area':
return math.pi * num_args[0]**2
elif op_name == 'circle_sector_area':
return num_args[1] / 360 * math.pi * (num_args[0]**2)
elif op_name == 'circumface':
return 2 * math.pi * num_args[0]
elif op_name == 'choose':
# Older versions of scipy may require scipy.misc.comb.
return scipy.special.comb(num_args[0], num_args[1]) # pylint: disable=unreachable
elif op_name == 'cosine':
return math.cos(num_args[0])
elif op_name == 'cube_edge_by_volume':
return num_args[0]**(1 / 3)
elif op_name == 'combined_work':
return 1 / (
min(num_args[0], 1 / num_args[0]) + min(num_args[1], 1 / num_args[1]))
elif op_name == 'count_interval':
return num_args[0] - num_args[1] + 1
elif op_name == 'diagonal':
return math.sqrt(num_args[0]**2 + num_args[1]**2)
elif op_name == 'divide' or op_name == 'speed':
if num_args[1] != 0:
return num_args[0] / num_args[1]
else:
return 0
elif op_name == 'factorial':
return math.factorial(min(15, int(num_args[0])))
elif op_name == 'floor':
return math.floor(num_args[0])
elif op_name == 'find_work':
return 1 / (
max(
min(num_args[0], 1 / num_args[0]), min(
num_args[1], 1 / num_args[1])) - min(
min(num_args[0], 1 / num_args[0]),
min(num_args[1], 1 / num_args[1])))
elif op_name == 'from_percent':
return num_args[0] / 100
elif op_name == 'gain_percent':
return 100 + num_args[0]
elif op_name == 'gcd':
return scipy.gcd(int(num_args[0]), int(num_args[1]))
elif op_name == 'inverse':
if num_args[0] != 0:
return 1 / num_args[0]
else:
return 0
elif op_name == 'lcm':
return scipy.lcm(int(num_args[0]), int(num_args[1]))
elif op_name == 'log':
return math.log(max(1e-5, num_args[0]), 2)
elif op_name == 'loss_percent':
return 100 - num_args[0]
elif op_name == 'max':
return max(num_args[0], num_args[1])
elif op_name == 'multiply':
return num_args[0] * num_args[1]
elif op_name == 'negate_percent':
return 100 - num_args[0]
elif op_name == 'negate':
return -num_args[0]
elif op_name == 'original_price_before_loss':
return num_args[1] * 100 / (100 + 1e-5 - num_args[0])
elif op_name == 'original_price_before_gain':
return num_args[1] * 100 / (100 + num_args[0])
elif op_name == 'permutation':
n, m = min(num_args[0], num_args[1]), max(num_args[0], num_args[1])
return math.factorial(int(m)) / math.factorial(int(m - n))
elif op_name == 'power':
return num_args[0]**min(num_args[1], 5)
elif op_name == 'percent':
return num_args[0] / 100 * num_args[1]
elif op_name == 'price_after_gain' or op_name == 'p_after_gain':
return (1 + num_args[0] / 100) * num_args[1]
elif op_name == 'price_after_loss' or op_name == 'price_after_loss':
return (1 - num_args[0] / 100) * num_args[1]
elif op_name == 'quadrilateral_area':
return num_args[0] * (num_args[1] + num_args[2]) / 2
elif op_name == 'reminder':
return num_args[0] % num_args[1]
elif op_name == 'rectangle_area':
return num_args[0] * num_args[1]
elif op_name == 'rectangle_perimeter':
return 2 * (num_args[0] + num_args[1])
elif op_name == 'rhombus_area':
return num_args[0] * num_args[1] / 2
elif op_name == 'sine':
return math.sin(num_args[0])
elif op_name == 'sqrt':
return math.sqrt(max(0, num_args[0]))
elif op_name == 'subtract':
return num_args[0] - num_args[1]
elif op_name == 'square_edge_by_perimeter':
return num_args[0] / 4
elif op_name == 'square_edge_by_area':
return math.sqrt(num_args[0])
elif op_name == 'square_area':
return num_args[0]**2
elif op_name == 'surface_cube':
return 6 * num_args[0]**2
elif op_name == 'surface_rectangular_prism':
return 2 * (
num_args[0] * num_args[1] + num_args[0] * num_args[2] +
num_args[1] * num_args[2])
elif op_name == 'semi_circle_perimiter':
return math.pi * num_args[0] + 2 * num_args[0]
elif op_name == 'square_perimeter' or op_name == 'rhombus_perimeter':
return 4 * num_args[0]
elif op_name == 'surface_sphere':
return 4 * math.pi * num_args[0]**2
elif op_name == 'speed_ratio_steel_to_stream':
return (num_args[0] + num_args[1]) / (num_args[0] - num_args[1])
elif op_name == 'speed_in_still_water':
return (num_args[0] + num_args[1]) / 2
elif op_name == 'stream_speed':
return (num_args[0] - num_args[1]) / 2
elif op_name == 'trapezium_area':
return num_args[0] * (num_args[1] + num_args[2]) / 2
elif op_name == 'triangle_area':
return num_args[0] * num_args[1] / 2
elif op_name == 'triangle_perimeter':
return num_args[0] + num_args[1] + num_args[2]
elif op_name == 'triangle_area_three_edges':
# Heron's formula
s = (num_args[0] + num_args[1] + num_args[2]) / 2
return math.sqrt(
max(0,
s * (s - num_args[0]) * (s - num_args[1]) * (s - num_args[2])))
elif op_name == 'union_prob':
return num_args[0] + num_args[1] - num_args[2]
elif op_name == 'negate_prob':
return 1 - num_args[0]
elif op_name == 'volume_cube':
return num_args[0]**3
elif op_name == 'volume_cone':
return math.pi * num_args[0]**2 * num_args[1] / 3
elif op_name == 'volume_cylinder':
return math.pi * num_args[0]**2 * num_args[1]
elif op_name == 'volume_rectangular_prism':
return num_args[0] * num_args[1] * num_args[2]
elif op_name == 'volume_sphere':
return 4 / 3 * math.pi * num_args[0]**3
def compute_result(list_op, list_num):
"""Python execution of MathQA ops."""
# The last of temporary results is the final answer.
temporary_results = []
for op in list_op:
op_name = op.split('(')[0]
start_bracket = op.find('(')
end_bracket = op.find(')')
op_args = op[start_bracket + 1:end_bracket].split(',')
num_args = []
for arg in op_args:
# The hash stands for a number stored in temporary_results.
# For example #2 refers to the third temporary result.
if arg[0] == '#':
temp_index = int(
re.findall(r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?',
arg)[0])
num_args.append(temporary_results[temp_index])
# The n prefix stands for numbers which listed in list_num -
# originally they were contained in the text.
elif arg[0] == 'n':
n_index = int(
re.findall(r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?',
arg)[0])
num_args.append(list_num[n_index])
elif arg[0] == 'c':
if arg == 'const_pi':
constant = math.pi
elif arg == 'const_deg_to_rad':
constant = math.pi / 180
else:
consts = re.findall(
r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?', arg)
if len(consts) == 1:
constant = float(consts[0])
else:
constant1 = float(consts[0])
constant2 = float('0.' + consts[1])
constant = constant1 + constant2
num_args.append(constant)
temporary_results.append(compute_single_result(op_name, num_args))
return temporary_results
def single_op_to_python_command(op_name, num_args):
"""An implementation of the most popular ops from the MathQA dataset."""
# See https://gitlab.cs.washington.edu/amini91/mathqa-categorization/
# and specfically line 142 and following in new_DataStructure.py
# for an implementation which covers more details.
if op_name == 'add':
return '{} + {}'.format(num_args[0], num_args[1])
elif op_name == 'circle_arc':
return '{} / 360 * math.pi * 2 * {}'.format(num_args[0], num_args[1])
elif op_name == 'circle_area':
return 'math.pi * {}**2'.format(num_args[0])
elif op_name == 'circle_sector_area':
return '{} / 360 * math.pi * ({}**2)'.format(num_args[1], num_args[0])
elif op_name == 'circumface':
return '2 * math.pi * {}'.format(num_args[0])
elif op_name == 'choose':
# Older versions of scipy may require scipy.misc.comb.
return 'scipy.special.comb({}, {})'.format(num_args[0], num_args[1]) # pylint: disable=unreachable
elif op_name == 'cosine':
return 'math.cos({})'.format(num_args[0])
elif op_name == 'cube_edge_by_volume':
return '{}**(1 / 3)'.format(num_args[0])
elif op_name == 'combined_work':
return '1 / (min({}, 1 / {}) + min({}, 1 / {}))'.format(
num_args[0], num_args[0], num_args[1], num_args[1])
elif op_name == 'count_interval':
return '{} - {} + 1'.format(num_args[0], num_args[1])
elif op_name == 'diagonal':
return 'math.sqrt({}**2 + {}**2)'.format(num_args[0], num_args[1])
elif op_name == 'divide' or op_name == 'speed':
# safe divide
if num_args[1] != 0:
return '{} / {}'.format(num_args[0], num_args[1])
else:
return '0'
elif op_name == 'factorial':
return 'math.factorial(min(15, int({})))'.format(num_args[0])
elif op_name == 'floor':
return 'math.floor({})'.format(num_args[0])
elif op_name == 'find_work':
return ('1 / (max(min({}, 1 / {}), min({}, 1 / {})) - min(min({}, 1 / {}), '
'min({}, 1 / {})))').format(num_args[0], num_args[0], num_args[1],
num_args[1], num_args[0], num_args[0],
num_args[1], num_args[1])
elif op_name == 'from_percent':
return '{} / 100'.format(num_args[0])
elif op_name == 'gain_percent':
return '100 + {}'.format(num_args[0])
elif op_name == 'gcd':
return 'scipy.gcd(int({}), int({}))'.format(num_args[0], num_args[1])
elif op_name == 'inverse':
# safe inverse
if num_args[0] != 0:
return '1 / {}'.format(num_args[0])
else:
return '0'
elif op_name == 'lcm':
return 'scipy.lcm(int({}), int({}))'.format(num_args[0], num_args[1])
elif op_name == 'log':
return 'math.log(max(1e-5, {}), 2)'.format(num_args[0])
elif op_name == 'loss_percent':
return '100 - {}'.format(num_args[0])
elif op_name == 'max':
return 'max({},{})'.format(num_args[0], num_args[1])
elif op_name == 'multiply':
return '{} * {}'.format(num_args[0], num_args[1])
elif op_name == 'negate_percent':
return '100 - {}'.format(num_args[0])
elif op_name == 'negate':
return '-{}'.format(num_args[0])
elif op_name == 'original_price_before_loss':
return '{} * 100 / (100 + 1e-5 - {}) # original price before loss'.format(
num_args[1], num_args[0])
elif op_name == 'original_price_before_gain':
return '{} * 100 / (100 + {}) # original_price_before gain'.format(
num_args[1], num_args[0])
elif op_name == 'permutation':
return ('math.factorial(int(max({}, {}))) / math.factorial(int(max({}, {}) '
'- min({}, {}))) # find all permutations').format(
num_args[0], num_args[1], num_args[0], num_args[1], num_args[0],
num_args[1])
elif op_name == 'power':
return '{}**min({}, 5)'.format(num_args[0], num_args[1])
elif op_name == 'percent':
return '{} / 100 * {}'.format(num_args[0], num_args[1])
elif op_name == 'price_after_gain' or op_name == 'p_after_gain':
return '(1 + {} / 100) * {}'.format(num_args[0], num_args[1])
elif op_name == 'price_after_loss' or op_name == 'price_after_loss':
return '(1 - {} / 100) * {}'.format(num_args[0], num_args[1])
elif op_name == 'quadrilateral_area':
return '{} * ({} + {}) / 2 # quadrilateral area'.format(
num_args[0], num_args[1], num_args[2])
elif op_name == 'reminder':
return '{} % {}'.format(num_args[0], num_args[1])
elif op_name == 'rectangle_area':
return '{} * {} # area of rectangle'.format(num_args[0], num_args[1])
elif op_name == 'rectangle_perimeter':
return '2 * ({} + {}) # perimetere of rectangle'.format(
num_args[0], num_args[1])
elif op_name == 'rhombus_area':
return '{} * {} / 2'.format(num_args[0], num_args[1])
elif op_name == 'sine':
return 'math.sin({})'.format(num_args[0])
elif op_name == 'sqrt':
return 'math.sqrt(max(0, {}))'.format(num_args[0])
elif op_name == 'subtract':
return '{} - {}'.format(num_args[0], num_args[1])
elif op_name == 'square_edge_by_perimeter':
return '{} / 4. # square edge given perimeter'.format(num_args[0])
elif op_name == 'square_edge_by_area':
return 'math.sqrt({}) # square edge given area'.format(num_args[0])
elif op_name == 'square_area':
return '{}**2'.format(num_args[0])
elif op_name == 'surface_cube':
return '6 * {}**2 # surface of a cube'.format(num_args[0])
elif op_name == 'surface_rectangular_prism':
return '2 * ({} * {} + {} * {} + {} * {}) # surface of a rectangular prism'.format(
num_args[0], num_args[1], num_args[0], num_args[2], num_args[1],
num_args[2])
elif op_name == 'semi_circle_perimiter':
return 'math.pi * {} + 2 * {} # perimeter of a semi-circle'.format(
num_args[0], num_args[0])
elif op_name == 'square_perimeter' or op_name == 'rhombus_perimeter':
return '4 * {}'.format(num_args[0])
elif op_name == 'surface_sphere':
return '4 * math.pi * {}**2'.format(num_args[0])
elif op_name == 'speed_ratio_steel_to_stream':
return '({} + {}) / ({} - {})'.format(num_args[0], num_args[1], num_args[0],
num_args[1])
elif op_name == 'speed_in_still_water':
return '{} + {} / 2'.format(num_args[0], num_args[1])
elif op_name == 'stream_speed':
return '{} - {} / 2'.format(num_args[0], num_args[1])
elif op_name == 'trapezium_area':
return '{} * ({} + {}) / 2'.format(num_args[0], num_args[1], num_args[2])
elif op_name == 'triangle_area':
return '{} * {} / 2'.format(num_args[0], num_args[1])
elif op_name == 'triangle_perimeter':
return '{} + {} + {} # perimeter of a triangle'.format(
num_args[0], num_args[1], num_args[2])
elif op_name == 'triangle_area_three_edges':
return ("(lambda s, a, b, c: math.sqrt(max(0, s * (s - a) * (s - b) * (s - "
"c))))(({} + {} + {}) / 2, {}, {}, {}) # Heron's formula").format(
num_args[0], num_args[1], num_args[2], num_args[0], num_args[1],
num_args[2])
elif op_name == 'union_prob':
return '{} + {} - {}'.format(num_args[0], num_args[1], num_args[2])
elif op_name == 'negate_prob':
return '1 - {}'.format(num_args[0])
elif op_name == 'volume_cube':
return '{}**3'.format(num_args[0])
elif op_name == 'volume_cone':
return 'math.pi * {}**2 * {} / 3'.format(num_args[0], num_args[1])
elif op_name == 'volume_cylinder':
return 'math.pi * {}**2 * {}'.format(num_args[0], num_args[1])
elif op_name == 'volume_rectangular_prism':
return '{} * {} * {}'.format(num_args[0], num_args[1], num_args[2])
elif op_name == 'volume_sphere':
return '4 / 3 * math.pi * {}**3'.format(num_args[0])
def compute_program(list_op):
"""Python execution of MathQA ops."""
# The last of temporary results is the final answer.
temporary_results = []
num_op = 0
for op in list_op:
op_name = op.split('(')[0]
start_bracket = op.find('(')
end_bracket = op.find(')')
op_args = op[start_bracket + 1:end_bracket].split(',')
num_args = []
for arg in op_args:
# The hash stands for a number stored in temporary_results.
# For example #2 refers to the third temporary result.
if arg[0] == '#':
temp_index = int(
re.findall(r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?',
arg)[0])
num_args.append('t{}'.format(temp_index))
# The n prefix stands for numbers which listed in list_num -
# originally they were contained in the text.
elif arg[0] == 'n':
# n_index = int(
# re.findall(r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?',
# arg)[0])
num_args.append(arg)
elif arg[0] == 'c':
if arg == 'const_pi':
constant = math.pi
elif arg == 'const_deg_to_rad':
constant = math.pi / 180
else:
consts = re.findall(
r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?', arg)
if len(consts) == 1:
constant = float(consts[0])
else:
constant1 = float(consts[0])
constant2 = float('0.' + consts[1])
constant = constant1 + constant2
num_args.append(str(constant))
temporary_result = 't{} = {}'.format(
num_op, single_op_to_python_command(op_name, num_args))
temporary_results.append(temporary_result)
num_op += 1
return temporary_results
def compute_nums(question):
"""Finds numbers in a string and convert them to floats."""
# The funny looking replace is needed to deal with numbers such as 4,000
# TODO(henrykm) deal with numbers written as words "one", "two", ...
return [
float(num.replace(',', '')) for num in re.findall(
r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?', question)
]
def compute_ops(linear_formula):
list_op = linear_formula.split('|')
# In some cases the list of operations contains a superflous last element,
# namely an empty string.
if not list_op[-1]:
list_op = list_op[:-1]
return list_op
def process_single_mathqa_example(example):
"""Execute a single example and verify coherence of a MathQA problem.
Args:
example: a dictionary with the following fields: Problem - a natural
language formulation of the problem Rationale - a natural language
solution of the problem options - five possible answers ( a) b) c) d) and
e) ) correct - the letter representing the correct answer
annotated_formula - formula representing the full solution linear_formula
- a string of operations separated by the | character, e.g.
multiply(n2,const_100)|multiply(n0,n1)|divide(#0,#1)|
multiply(#2,const_100)|divide(#3,#1)| category - a natural language
description of the category to which a given problem belongs.
Returns:
answer_num: numerical answer contained in the example
python_result: numerical answers computed in Python, including intermediate
results. The answer_num should be close python_result[-1]
list_op: list of arithmetic operations
list_num: list of identified numbers in the text
"""
question = example['Problem']
list_num = compute_nums(question)
list_op = compute_ops(example['linear_formula'])
answers = example['options']
correct_answer = example['correct']
index = answers.find('{} )'.format(correct_answer))
answer_string = re.findall(
r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?', answers[index:])
# The if statement deals with empty lists - they are needed to treat
# a correct non-numerical answer e) None of the above. Here we do not want
# non-numerical answers, hence we return None.
if answer_string:
answer_num = float(
re.findall(r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?',
answers[index:])[0].replace(',', ''))
else:
return None
# The if statements below deals with answers written as fractions e.g.
# a ) 1 / 2 , b ) 1 / 3 , c ) 1 / 5 , d ) 10 / 30 , e ) 2 / 5 ?
index_end_of_answer = index + len(str(answer_num)) + 3
if index_end_of_answer < len(answers) and answers[index_end_of_answer] == '/':
answer_denom = float(
re.findall(r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?',
answers[index_end_of_answer:])[0].replace(',', ''))
answer_num /= answer_denom
python_result = compute_result(list_op, list_num)
python_program = compute_program(list_op)
return answer_num, python_result, python_program, list_op, list_num
def convert_float_to_mathqa(number):
floor = int(float(number))
if floor == number:
return 'const_' + str(floor)
else:
return 'const_' + str(floor) + '_' + str(number)[len(str(floor)) + 1:]
def convert_to_subtract(const_string):
return 'subtract({},const_0)'.format(const_string)
def execute_mathqa_dsl_program(problem, dsl_code):
"""Executes the DSL code for a given problem.
Args:
problem: problem formulation (needed to get parameters).
dsl_code: DSL code.
Returns:
the result of executing of the DSL code.
"""
n0_loc = problem.find('n0')
list_num = compute_nums(problem[n0_loc:])
# The list contains _all_ numbers in the string, hence in particular
# for n0 = 2.0 n1 = 3.0 we are getting list_num = [0.0, 2.0, 1.0, 3.0],
# so that below we are filtering the odd occurrences.
assert len(list_num) % 2 == 0
list_num = [list_num[2 * i + 1] for i in range(int(len(list_num) / 2))]
# dsl_code is a list of strings; since all DSL programs are single liners,
# we need to guess the correct line. For now we use the same location as in
# in the ground truth examples, that is the first line.
list_op = compute_ops(dsl_code[0])
try:
results = compute_result(list_op, list_num)[-1]
except: # pylint: disable=bare-except
results = None
return results
def is_number(s):
try:
float(s)
return True
except: # pylint: disable=bare-except
return False
def execute_mathqa_program(problem, program):
"""Executes the DSL code for a given problem.
Args:
problem: problem formulation (not needed, but we want the same API as
in the DSL case).
program: Python code.
Returns:
the result of executing of the Python code.
"""
del problem # problem only needed in the DSL version.
# Programs are lists of strings. We need to concatenate them in order to exec.
program = '\n'.join(program)
var_dict = {}
try:
# The logic of this is the following: if exec with timeout is working
# without exceptions, then we can call exec again and gather the variables.
exec(program, globals(), var_dict) # pylint: disable=exec-used
if 'answer' in var_dict and is_number(var_dict['answer']):
return float(var_dict['answer'])
else:
return None
except: # pylint: disable=bare-except
return None
@gin.configurable(module='trax.data')
def CreateMathQAInputs( # pylint: disable=invalid-name
dataset_path=None,
train=True,
test=False,
challenge=False,
tolerance=0.01,
cumulative=True,
python_code=False,
full_dict=False,
partial_results=True,
nlp_rationale=False,
correct_answer=False,
answer_in_mathqa_format=True,
correct_answer_given_reasoning=False,
category=False,
order_prediction=False,
reduced_operation_name=True,
qed=False):
"""Prepares MathQA inputs.
The generation procedure leaves a lot parameters to be set by the user.
Currently we support only correct examples in the following sense:
python execution agrees with the declared answer up to 1%.
According to this criterion wrong examples such as
problem: calculate 85184 ÷ ? = 352
operations ['multiply(n0,n1)']
are ignored (this should be divide(n0,n1) in this case).
Args:
dataset_path: a path with the MathQA dataset.
train: if True, then generate training examples; if train, test and
challenge are set to False generate validation examples.
test: if train is set to False and test is set to True,
then generate test examples.
challenge: if train and test are set to False and challenge is set to True,
then generate challenge examples.
tolerance: if for a given example relative difference between Python result
and the result declared in the dataset exceeds the level, then the example
is dropped; tolerances ranging from 0.1 to 0.001 yield from 18K to 21K
examples.
cumulative: if set to True, then generate examples in the format input -
problem + numbers + op1 + op2 + op3 target - op4 If set to False, then
examples are in the format input - problem + numbers target - all
operations.
python_code: if set to True, then generates python code instead of
MathQA commands.
full_dict: if set to True, then Python examples are returned together with
the DSL code and the NLP rationale.
partial_results: if set to True, then partial results will be reported as
part of the input, e.g. input - problem + numbers + op1 + #1 + op2 + #2 +
op3 + #3, target - op4, where #k is the partial results from operation
opk. Activated only in cumulative set to True.
nlp_rationale: if set to True, then input is the problem and the target is
the nlp rationale.
correct_answer: if set to True, then input is the problem plus all possible
answers and the target is the correct answer.
answer_in_mathqa_format: if set to True, then convert numerical answer to
the MathQA format and wrap it in the subtract operation.
E.g. "3.13" is converted to "subtract(const_3_13,const_0)".
correct_answer_given_reasoning: if set to True, then input is the problem
plus linear formula plus all possible answers and the target is the
correct answer.
category: if set to True, then input is the problem and the target is its
category.
order_prediction: if set to True, then input is the problem and a list of
all operations; with probability 0.5 two operations are swapped; the task
consists in detecting whether the operations were swapped. See the
order prediction task in CreateAquaInputs in this file.
reduced_operation_name: If set to True, then in order prediction consider
only the operation token without parameterers.
qed: if set to True, then the reasoning is finished with an additional
operation qed.
Returns:
mathqa_yield_examples: a generator of MathQA examples; the generator yields
non-tokenized examples - they can be further processed using for example
the tokenize function from this module
"""
if train:
dataset_path = os.path.join(dataset_path, 'train.json')
elif test:
dataset_path = os.path.join(dataset_path, 'test.json')
elif challenge:
dataset_path = os.path.join(dataset_path, 'challenge_test.json')
else:
dataset_path = os.path.join(dataset_path, 'dev.json')
# Opening with GFile allows to use remotely stored files, e.g.
# in a gs bucket.
dataset_handle = tf.io.gfile.GFile(dataset_path, 'r')
dataset = json.load(dataset_handle)
def mathqa_yield_examples(generator=None):
del generator
while True:
for example in itertools.cycle(dataset):
result = process_single_mathqa_example(example)
# TODO(henrykm): Remove the first two ifs.
if not result:
continue
answer_num, python_result, python_program, list_op, list_num = result
if not answer_num or not python_result[-1]:
continue
if qed:
list_op.append('qed')
if math.isclose(answer_num, python_result[-1], rel_tol=tolerance):
input_prefix = example['Problem']
for i in range(len(list_num)):
input_prefix += ' n{} = {}'.format(i, list_num[i])
if cumulative:
for i in range(len(list_op)):
input_values = input_prefix
target_values = list_op[i]
input_prefix += ' ' + list_op[i]
if partial_results:
input_prefix += ' #{} = {}'.format(i, answer_num)
yield input_values, target_values, np.array([1] *
len(target_values))
elif python_code:
input_values = '# ' + input_prefix
target_values = ''
for command in python_program:
if 'math' in command:
target_values += 'import math\n'
break
for command in python_program:
if 'scipy' in command:
target_values += 'import scipy\n'
break
for i in range(len(list_num)):
target_values += 'n{} = {}\n'.format(i, list_num[i])
target_values += '\n'.join(python_program[:-1])
final_line = python_program[-1].split('=')[1]
target_values += '\nanswer ={}'.format(final_line)
var_dict = {}
# We generate a python code and want to check whether the answer
# is coorect.
exec(target_values, globals(), var_dict) # pylint: disable=exec-used
if math.isclose(answer_num, var_dict['answer'], rel_tol=tolerance):
if full_dict:
yield input_values, target_values, example[
'linear_formula'], example['Rationale']
else:
yield input_values, target_values, np.array([1] *
len(target_values))
elif nlp_rationale:
input_values = 'infer full rationale: ' + input_prefix
target_values = example['Rationale']
yield input_values, target_values, np.array([1] *
len(target_values))
elif correct_answer:
input_values = 'infer correct answer: ' + input_prefix
input_values += ' ' + example['options']
if answer_in_mathqa_format:
target_values = str(answer_num)
target_values = convert_to_subtract(
convert_float_to_mathqa(target_values))
else:
target_values = example['correct']
yield input_values, target_values, np.array([1] *
len(target_values))
elif correct_answer_given_reasoning:
input_values = 'infer correct answer given reasoning: ' + input_prefix
input_values += ' ' + ' '.join(list_op) + ' ' + example['options']
target_values = example['correct']
yield input_values, target_values, np.array([1] *
len(target_values))
elif category:
input_values = 'infer category: ' + input_prefix
target_values = example['category']
yield input_values, target_values, np.array([1] *
len(target_values))
elif order_prediction:
if np.random.uniform() < 0.5 and len(list_op) >= 2:
idx = range(len(list_op))
i1, i2 = random.sample(idx, 2)
list_op[i1], list_op[i2] = list_op[i2], list_op[i1]
target_values = 'not_ordered'
else:
target_values = 'ordered'
if reduced_operation_name:
list_op = [op.split('(')[0] for op in list_op]
input_values = 'order prediction: ' + input_prefix + ' ' + ' '.join(
list_op)
yield input_values, target_values, np.array([1] *
len(target_values))
else:
input_values = 'infer full calculation: ' + input_prefix
target_values = example['linear_formula']
yield input_values, target_values, np.array([1] *
len(target_values))
return mathqa_yield_examples
@gin.configurable(module='trax.data')
def CreateAquaInputs( # pylint: disable=invalid-name
dataset_path=None,
train=True,
cumulative=False,
rationale=False,
correct_answer=False,
correct_answer_given_reasoning=False,
partial_reasoning=True,
order_prediction=False):
"""Prepares Aqua inputs.
Args:
dataset_path: a path with the Aqua dataset.
train: if True, then generate training examples, otherwhise generate
validation examples (the dataset has also a test set).
cumulative: if set to True, then generate examples in the format input -
problem + step1 + step3 + step3 target - step4 If set to False, then
examples are in the format input - problem, target - all operations.
rationale: if set to True, then input is the problem and the target is the
rationale.
correct_answer: if set to True, then input is the problem plus all possible
answers and the target is the correct answer.
correct_answer_given_reasoning: if set to True, then input is the problem
plus reasoning (aka rationale) plus all possible answers and the target is
the correct answer.
partial_reasoning: an additional option related to
correct_answer_given_reasoning; if set to True, then we take a random
prefix of the reasoning.
order_prediction: if set to True, then input is the problem and a list of
all operations; with probability 0.5 two operations are swapped; the task
consists in detecting whether the operations were swapped. A similar
additional task was considered in https://arxiv.org/pdf/1909.11942.pdf and
in a recent work of Piotr Piękos, henrykm@ and mateuszm@.
Returns:
aqua_yield_examples: a generator of Aqua examples; the generator yields
non-tokenized examples - they can be further processed using for example
the tokenize function from this module
"""
if train:
dataset_path = os.path.join(dataset_path, 'train.json')
else:
dataset_path = os.path.join(dataset_path, 'dev.json')
# Opening with GFile allows to use remotely stored files, e.g.
# in a gs bucket.
dataset_handle = tf.io.gfile.GFile(dataset_path, 'r')
dataset = []
for line in dataset_handle:
dataset.append(json.loads(line))
def aqua_yield_examples(generator=None):
del generator
while True:
for example in itertools.cycle(dataset):
input_prefix = example['question']
steps = example['rationale'].split('\n')
if cumulative:
for i in range(len(steps)):
input_values = 'infer cumulative rationale: ' + input_prefix
target_values = steps[i]
input_prefix += ' ' + steps[i]
yield input_values, target_values, np.array([1] *
len(target_values))
elif rationale:
input_values = 'infer full rationale: ' + input_prefix
target_values = example['rationale']
yield input_values, target_values, np.array([1] * len(target_values))
elif correct_answer:
input_values = 'infer correct answer: ' + input_prefix
input_values += ' ' + ' '.join(example['options'])
target_values = example['correct']
yield input_values, target_values, np.array([1] * len(target_values))
elif correct_answer_given_reasoning:
input_values = 'infer correct answer given reasoning: ' + input_prefix
if partial_reasoning:
reasoning_list = example['rationale'].split('\n')
reasoning_list = reasoning_list[0:np.random
.randint(0, len(reasoning_list))]
reasoning = '\n'.join(reasoning_list)
else:
reasoning = example['rationale']
input_values += ' ' + example['rationale'] + ' ' + ' '.join(
example['options'])
target_values = example['correct']
yield input_values, target_values, np.array([1] * len(target_values))
elif order_prediction:
if np.random.uniform() < 0.5 and len(steps) >= 2:
idx = range(len(steps))
i1, i2 = random.sample(idx, 2)
steps[i1], steps[i2] = steps[i2], steps[i1]
target_values = 'not_ordered'
else:
target_values = 'ordered'
input_values = 'order prediction: ' + input_prefix + ' ' + '\n'.join(
steps)
yield input_values, target_values, np.array([1] * len(target_values))
else:
raise ValueError(
'One of the boolean parameters of the Aqua generator must be set to True.'
)
return aqua_yield_examples
@gin.configurable(module='trax.data')
def CreateDropInputs( # pylint: disable=invalid-name
train=True, mathqa_format=False):
"""Prepares Drop inputs.
Args:
train: if True, then generate training examples, otherwhise generate
validation examples (the dataset has also a test set).
mathqa_format: if True, then floats in targets are converted to the
the MathQA convention and wrapped in the subtract operation.
E.g. "3.13" is converted to "subtract(const_3_13,const_0)".
Returns:
drop_yield_examples: a generator of Drop examples; the generator yields
non-tokenized examples - they can be further processed using for example
the tokenize function from this module
"""
if train:
dataset = tfds.load(name='drop', split='train')
else:
dataset = tfds.load(name='drop', split='dev')
dataset = tfds.as_numpy(dataset)
def drop_yield_examples(generator=None):
del generator
while True:
for example in itertools.cycle(dataset):
input_values = 'drop question: ' + example['passage'].decode(
'utf-8') + ' ' + example['question'].decode('utf-8')
target_values = example['answer'].decode('utf-8')
# Apparently the dataset has some empty "target values" -
# when such a value is encountered, the Tokenizer decides to assign
# to it a float32 tensor and the training fails.
if not target_values:
continue
if mathqa_format:
if target_values.replace('.', '', 1).isdigit():
target_values = convert_to_subtract(
convert_float_to_mathqa(target_values))
yield input_values, target_values, np.array(
[1] * len(target_values), dtype=np.int32)
return drop_yield_examples
@gin.configurable(module='trax.data')
def CreateAnnotatedDropInputs( # pylint: disable=invalid-name
dataset_path=None,
train=True,
single_file=True,
unique=False,
total_number_of_samples=None,
percentile=1.):
r"""Prepares annotated Drop inputs.
Example of an annotated input which can be used with this interface:
{
'passage': 'The Armenian Prelature of Cyprus was established in 973 by
Catholicos Khatchig I. Historically, the Prelature has been under the
jurisdiction of the Catholicosate of the Great House of Cilicia, while today
it is the oldest theme that falls under its jurisdiction. Since 2014 the
Prelate, a Catholicosal Vicar General, has been Archbishop Nareg Alemezian.
The parish priest in Nicosia is Fr. Momik Habeshian, while the parish priest
in Larnaca and Limassol is Fr. Mashdots Ashkarian. For centuries, the
Prelature building was located within the Armenian compound in Victoria
street in walled Nicosia; when that area was taken over by Turkish-Cypriot
extremists in 1963-1964, the Prelature was temporarily housed in Aram
Ouzounian street and, later on, in Kyriakos Matsis street in Ayios
Dhometios. Thanks to the efforts of Bishop Zareh Aznavorian and with
financial aid from the Evangelical Church of Westphalia, the new Prelature
building was erected in 1983, next to the Virgin Mary church and the Nareg
school in Nicosia, by architects Athos Dikaios & Alkis Dikaios; it was
officially inaugurated on 4 March 1984, during the pastoral visit of
Catholicos Karekin II. By initiative of Archbishop Varoujan Hergelian, in
1998 the basement of the building was renovated and the "Vahram Utidjian"
Hall was formed; previously a store room, it became a reality from the
proceeds of the auction in 1994 of the art collection that Vahram Utidjian
had donated to the Prelature in 1954. It was inaugurated on 3 February 1999
by Catholicos Aram I; numerous charity, communal and cultural events take
place there. The Prelature\'s consistory houses a collection of
ecclesiastical relics, some of which were previously in the old Virgin Mary
church or the Magaravank.',
'question': 'How many years after the Vahram Utidjian was donated to the
Prelature was it sold at an auction?',
'answer': 40,
'calculation': 'subtract(n8,n9)'
}
In this example the calculation is formulated using the notation from the
MathQA dataset, but this is not required. subtract(n8,n9) means that the
answer 40 can be obtained through the substraction of the 9th and and the 10th
number in the input. The input consists of the passage concatened with the
question. The annotations can be generated using, for example, a method
from the paper https://arxiv.org/abs/1909.00109.
Args:
dataset_path: a path with the Aqua dataset.
train: if True, then generate training examples, otherwhise generate
validation examples (the dataset has also a test set).
single_file: if True, then look just for one file. If False, read all
json files in a given directory and assume that each file contains one
example. Applied only to training data.
unique: if set to True, then the generator will provide at most one question
per passage.
total_number_of_samples: if set to a positive integer, then the total number
of unique samples will be bounded total_number_of_samples.
percentile: the percentile of the train dataset used for training; default
set to 1., though setting to a lower value can be interesting when
combined train is combined with another source of data.
Returns:
drop_annotated_yield_examples: a generator of annotated Drop examples;
the generator yields non-tokenized examples - they can be further processed
using for example the tokenize function from this module.
"""
if train:
if single_file:
dataset_path = os.path.join(dataset_path, 'train_annotated.json')
else:
dataset_path = os.path.join(dataset_path, 'dev_annotated.json')
def load_dataset():
dataset = []
if single_file:
# Opening with GFile allows to use remotely stored files, e.g.
# in a gs bucket.
dataset_handle = tf.io.gfile.GFile(dataset_path, 'r')
for line in dataset_handle:
dataset.append(json.loads(line))
else:
all_files = tf.io.gfile.listdir(dataset_path)
for filename in all_files:
if 'json' in filename:
print('Loading data from file {}'.format(filename))
with tf.io.gfile.GFile(os.path.join(dataset_path, filename)) as f:
for line in f:
dataset.append(json.loads(line))
print('The total size of the dataset {}'.format(len(dataset)))
return dataset[:int(len(dataset) * percentile)]
def drop_annotated_yield_examples(generator=None):
del generator
while True:
passages = set()
unique_examples = set()
# Notice that below we enable a poor man RL loop
# aka the DAgger algorithm: https://arxiv.org/pdf/1011.0686.pdf
# tl;dr: after parsing all examples we re-load the dataset - this
# may become handy if a prediction service generates new examples.
dataset = load_dataset()
for example in dataset:
# If total_number_of_samples is not None and we have reached this
# number of samples, then we re-load the dataset.
if total_number_of_samples:
if len(unique_examples) >= total_number_of_samples:
break
# Do we have a pre-calculated input in the example?
if 'input' in example.keys():
question = example['input']
# Remove the old prompt
question = question[question.find(':') + 2:]
else:
# If input is not present, then we expect that this is an
# original drop example.
if unique and example['passage'] in passages:
continue
passages.add(example['passage'])
question = example['passage'] + ' ' + example['question']
list_num = [
float(num.replace(',', '').rstrip('.').lstrip('.')) # pylint: disable=g-complex-comprehension
for num in re.findall(
r'[-+]?[.]?[\d]+(?:,\d\d\d)*[\.]?\d*(?:[eE][-+]?\d+)?',
question)
]
for i in range(len(list_num)):
question += ' n{} = {}'.format(i, list_num[i])
input_values = 'drop annotated question: ' + question
target_values = example['calculation']
unique_examples.add((input_values, target_values))
yield input_values, target_values, np.array(
[1] * len(target_values), dtype=np.int32)
return drop_annotated_yield_examples
| [
"tensorflow.device",
"tensorflow.concat",
"tensorflow.zeros",
"tensorflow.cast",
"tensorflow.image.random_crop",
"numpy.concatenate",
"tensorflow.compat.v1.gfile.GFile",
"tensorflow.nest.flatten",
"tensorflow.nest.pack_sequence_as",
"numpy.random.randint",
"tensorflow.image.random_flip_left_right",
"tensorflow.io.gfile.GFile",
"numpy.arange",
"tensorflow.squeeze",
"tensorflow.io.gfile.listdir",
"tensorflow.strings.unicode_decode",
"numpy.zeros",
"tensorflow.image.resize_with_crop_or_pad",
"tensorflow.less",
"numpy.random.choice",
"tensorflow.shape",
"tensorflow.io.gfile.makedirs",
"numpy.logical_or",
"tensorflow.zeros_like",
"tensorflow.print",
"numpy.array",
"tensorflow.size",
"numpy.random.random",
"tensorflow.reshape",
"tensorflow.ones_like",
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tombroz/berkeley-cs294_homework | 5419b772c734093c750362d2e09b46ce59d79da6 | import os
import sys
import time
import gym.spaces
import itertools
import numpy as np
import random
import tensorflow as tf
import tensorflow.contrib.layers as layers
from collections import namedtuple
from dqn_utils import *
OptimizerSpec = namedtuple("OptimizerSpec", ["constructor", "kwargs", "lr_schedule"])
def learn(env,
q_func,
optimizer_spec,
session,
exploration=LinearSchedule(1000000, 0.1),
stopping_criterion=None,
replay_buffer_size=1000000,
batch_size=32,
gamma=0.99,
learning_starts=50000,
learning_freq=4,
frame_history_len=4,
target_update_freq=10000,
grad_norm_clipping=10,
out_dir=None,
double_q=True):
"""Run Deep Q-learning algorithm.
You can specify your own convnet using q_func.
All schedules are w.r.t. total number of steps taken in the environment.
Parameters
----------
env: gym.Env
gym environment to train on.
q_func: function
Model to use for computing the q function. It should accept the
following named arguments:
img_in: tf.Tensor
tensorflow tensor representing the input image
num_actions: int
number of actions
scope: str
scope in which all the model related variables
should be created
reuse: bool
whether previously created variables should be reused.
optimizer_spec: OptimizerSpec
Specifying the constructor and kwargs, as well as learning rate schedule
for the optimizer
session: tf.Session
tensorflow session to use.
exploration: rl_algs.deepq.utils.schedules.Schedule
schedule for probability of chosing random action.
stopping_criterion: (env, t) -> bool
should return true when it's ok for the RL algorithm to stop.
takes in env and the number of steps executed so far.
replay_buffer_size: int
How many memories to store in the replay buffer.
batch_size: int
How many transitions to sample each time experience is replayed.
gamma: float
Discount Factor
learning_starts: int
After how many environment steps to start replaying experiences
learning_freq: int
How many steps of environment to take between every experience replay
frame_history_len: int
How many past frames to include as input to the model.
target_update_freq: int
How many experience replay rounds (not steps!) to perform between
each update to the target Q network
grad_norm_clipping: float or None
If not None gradients' norms are clipped to this value.
"""
assert type(env.observation_space) == gym.spaces.Box
assert type(env.action_space) == gym.spaces.Discrete
###############
# BUILD MODEL #
###############
if not out_dir: out_dir = os.path.join(os.getcwd(),'results',env.unwrapped.spec.id +'_' + time.strftime("%d-%m-%Y_%H-%M-%S"))
writer = tf.summary.FileWriter(out_dir)
if len(env.observation_space.shape) == 1:
# This means we are running on low-dimensional observations (e.g. RAM)
input_shape = env.observation_space.shape
else:
img_h, img_w, img_c = env.observation_space.shape
input_shape = (img_h, img_w, frame_history_len * img_c)
num_actions = env.action_space.n
# set up placeholders
# placeholder for current observation (or state)
obs_t_ph = tf.placeholder(tf.uint8, [None] + list(input_shape))
# placeholder for current action
act_t_ph = tf.placeholder(tf.int32, [None])
# placeholder for current reward
rew_t_ph = tf.placeholder(tf.float32, [None])
# placeholder for next observation (or state)
obs_tp1_ph = tf.placeholder(tf.uint8, [None] + list(input_shape))
# placeholder for end of episode mask
# this value is 1 if the next state corresponds to the end of an episode,
# in which case there is no Q-value at the next state; at the end of an
# episode, only the current state reward contributes to the target, not the
# next state Q-value (i.e. target is just rew_t_ph, not rew_t_ph + gamma * q_tp1)
done_mask_ph = tf.placeholder(tf.float32, [None])
# casting to float on GPU ensures lower data transfer times.
obs_t_float = tf.cast(obs_t_ph, tf.float32) / 255.0
obs_tp1_float = tf.cast(obs_tp1_ph, tf.float32) / 255.0
# Here, you should fill in your own code to compute the Bellman error. This requires
# evaluating the current and next Q-values and constructing the corresponding error.
# TensorFlow will differentiate this error for you, you just need to pass it to the
# optimizer. See assignment text for details.
# Your code should produce one scalar-valued tensor: total_error
# This will be passed to the optimizer in the provided code below.
# Your code should also produce two collections of variables:
# q_func_vars
# target_q_func_vars
# These should hold all of the variables of the Q-function network and target network,
# respectively. A convenient way to get these is to make use of TF's "scope" feature.
# For example, you can create your Q-function network with the scope "q_func" like this:
# <something> = q_func(obs_t_float, num_actions, scope="q_func", reuse=False)
# And then you can obtain the variables like this:
# q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope='q_func')
# Older versions of TensorFlow may require using "VARIABLES" instead of "GLOBAL_VARIABLES"
######
def q_online(obs_float):
return q_func(obs_float,num_actions,scope="online_q_func",reuse=tf.AUTO_REUSE)
# Q-function network and target network
q_online_t = q_online(obs_t_float)
q_online_tp1 = q_online(obs_tp1_float)
q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES,scope='online_q_func')
q_target = q_func(obs_tp1_float,num_actions,scope="target_q_func",reuse=False)
target_q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES,scope='target_q_func')
# Bellman training error
if double_q:
q_max = gather_2d(q_target,tf.argmax(q_online_tp1,axis=1,output_type=tf.int32))
else:
q_max = tf.reduce_max(q_target,axis=1)
target = rew_t_ph + gamma * q_max * (1.0 - done_mask_ph)
q_t_act = gather_2d(q_online_t,act_t_ph)
total_error = tf.reduce_mean(huber_loss(target - q_t_act))
######
# construct optimization op (with gradient clipping)
learning_rate = tf.placeholder(tf.float32, (), name="learning_rate")
optimizer = optimizer_spec.constructor(learning_rate=learning_rate, **optimizer_spec.kwargs)
train_fn = minimize_and_clip(optimizer, total_error,
var_list=q_func_vars, clip_val=grad_norm_clipping)
# update_target_fn will be called periodically to copy Q network to target Q network
update_target_fn = []
for var, var_target in zip(sorted(q_func_vars, key=lambda v: v.name),
sorted(target_q_func_vars, key=lambda v: v.name)):
update_target_fn.append(var_target.assign(var))
update_target_fn = tf.group(*update_target_fn)
# construct the replay buffer
replay_buffer = ReplayBuffer(replay_buffer_size, frame_history_len)
###############
# RUN ENV #
###############
model_initialized = False
num_param_updates = 0
mean_episode_reward = -float('nan')
best_mean_episode_reward = -float('inf')
last_obs = env.reset()
LOG_EVERY_N_STEPS = 10000
DEBUG_LOG_EVERY_N_STEPS = 1000
start = time.time()
for t in itertools.count():
### 1. Check stopping criterion
if stopping_criterion is not None and stopping_criterion(env, t):
break
### 2. Step the env and store the transition
# At this point, "last_obs" contains the latest observation that was
# recorded from the simulator. Here, your code needs to store this
# observation and its outcome (reward, next observation, etc.) into
# the replay buffer while stepping the simulator forward one step.
# At the end of this block of code, the simulator should have been
# advanced one step, and the replay buffer should contain one more
# transition.
# Specifically, last_obs must point to the new latest observation.
# Useful functions you'll need to call:
# obs, reward, done, info = env.step(action)
# this steps the environment forward one step
# obs = env.reset()
# this resets the environment if you reached an episode boundary.
# Don't forget to call env.reset() to get a new observation if done
# is true!!
# Note that you cannot use "last_obs" directly as input
# into your network, since it needs to be processed to include context
# from previous frames. You should check out the replay buffer
# implementation in dqn_utils.py to see what functionality the replay
# buffer exposes. The replay buffer has a function called
# encode_recent_observation that will take the latest observation
# that you pushed into the buffer and compute the corresponding
# input that should be given to a Q network by appending some
# previous frames.
# Don't forget to include epsilon greedy exploration!
# And remember that the first time you enter this loop, the model
# may not yet have been initialized (but of course, the first step
# might as well be random, since you haven't trained your net...)
idx = replay_buffer.store_frame(last_obs)
last_obs = replay_buffer.encode_recent_observation()
if random.uniform(0,1) < exploration.value(t) or not model_initialized:
action = np.random.choice(num_actions)
else:
action = np.argmax(session.run(q_online_t,feed_dict={obs_t_ph: last_obs[None]})[0])
last_obs,reward,done,info = env.step(action)
replay_buffer.store_effect(idx,action,reward,done)
if done:
last_obs = env.reset()
# at this point, the environment should have been advanced one step (and
# reset if done was true), and last_obs should point to the new latest
# observation
### 3. Perform experience replay and train the network.
# note that this is only done if the replay buffer contains enough samples
# for us to learn something useful -- until then, the model will not be
# initialized and random actions should be taken
if (t > learning_starts and
t % learning_freq == 0 and
replay_buffer.can_sample(batch_size)):
# Here, you should perform training. Training consists of four steps:
# 3.a: use the replay buffer to sample a batch of transitions (see the
# replay buffer code for function definition, each batch that you sample
# should consist of current observations, current actions, rewards,
# next observations, and done indicator).
# 3.b: initialize the model if it has not been initialized yet; to do
# that, call
# initialize_interdependent_variables(session, tf.global_variables(), {
# obs_t_ph: obs_t_batch,
# obs_tp1_ph: obs_tp1_batch,
# })
# where obs_t_batch and obs_tp1_batch are the batches of observations at
# the current and next time step. The boolean variable model_initialized
# indicates whether or not the model has been initialized.
# Remember that you have to update the target network too (see 3.d)!
# 3.c: train the model. To do this, you'll need to use the train_fn and
# total_error ops that were created earlier: total_error is what you
# created to compute the total Bellman error in a batch, and train_fn
# will actually perform a gradient step and update the network parameters
# to reduce total_error. When calling session.run on these you'll need to
# populate the following placeholders:
# obs_t_ph
# act_t_ph
# rew_t_ph
# obs_tp1_ph
# done_mask_ph
# (this is needed for computing total_error)
# learning_rate -- you can get this from optimizer_spec.lr_schedule.value(t)
# (this is needed by the optimizer to choose the learning rate)
# 3.d: periodically update the target network by calling
# session.run(update_target_fn)
# you should update every target_update_freq steps, and you may find the
# variable num_param_updates useful for this (it was initialized to 0)
obs_t_batch,act_t_batch,rew_t_batch,obs_tp1_batch,done_mask_batch = replay_buffer.sample(batch_size)
if not model_initialized:
initialize_interdependent_variables(session,tf.global_variables(),
{obs_t_ph: obs_t_batch,obs_tp1_ph: obs_tp1_batch,})
model_initialized = True
session.run([total_error,train_fn],
feed_dict={obs_t_ph: obs_t_batch,act_t_ph: act_t_batch, rew_t_ph: rew_t_batch,
obs_tp1_ph: obs_tp1_batch,done_mask_ph: done_mask_batch,
learning_rate: optimizer_spec.lr_schedule.value(t)})
num_param_updates += 1
if num_param_updates % target_update_freq == 0:
session.run(update_target_fn)
### 4. Log progress
episode_rewards = get_wrapper_by_name(env, "Monitor").get_episode_rewards()
if len(episode_rewards) > 0:
mean_episode_reward = np.mean(episode_rewards[-100:])
if len(episode_rewards) > 100:
best_mean_episode_reward = max(best_mean_episode_reward, mean_episode_reward)
if t % DEBUG_LOG_EVERY_N_STEPS == 0:
print('Timestep = {} | Elapsed time = {:.3f}sec'.format(t,time.time() - start))
if t % LOG_EVERY_N_STEPS == 0 and model_initialized:
print("Timestep %d" % (t,))
print("mean reward (100 episodes) %f" % mean_episode_reward)
print("best mean reward %f" % best_mean_episode_reward)
print("episodes %d" % len(episode_rewards))
print("exploration %f" % exploration.value(t))
print("learning_rate %f" % optimizer_spec.lr_schedule.value(t))
mean_rew_summ = tf.Summary(value=[tf.Summary.Value(tag='mean_rew',simple_value=mean_episode_reward)])
best_mean_rew_summ = tf.Summary(value=[tf.Summary.Value(tag='best_mean_rew',simple_value=best_mean_episode_reward)])
writer.add_summary(mean_rew_summ, global_step=t)
writer.add_summary(best_mean_rew_summ, global_step=t)
sys.stdout.flush()
def gather_2d(vectors,indices):
return tf.gather_nd(vectors, tf.stack([tf.range(tf.shape(vectors)[0]), indices], axis=1)) | [
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"tensorflow.cast",
"tensorflow.global_variables",
"tensorflow.placeholder",
"tensorflow.Summary.Value",
"numpy.mean",
"tensorflow.argmax",
"tensorflow.group"
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mihirp1998/sbnet_3d_tensorflow | 2a990c6e16d33b5b89815c9543819a3e42ebab1d | """
Sparse Blocks Network
Copyright (c) 2017, Uber Technologies, Inc.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
"""
#
# Sparse convolution operators.
#
# Usage:
# ```
# import numpy as np
# import tensorflow as tf
#
# from sparse_conv_lib import convert_mask_to_block_indices, sparse_conv2d
#
# # Binary mask to define sparsity.
# mask = tf.constant(
# np.array(
# [[
# [0, 0, 0, 0, 0], # YAPF_NO_FORMAT
# [0, 0, 1, 0, 0],
# [1, 0, 0, 0, 0],
# [0, 0, 0, 0, 0],
# [0, 0, 0, 0, 0]
# ]],
# dtype=np.float32))
# # Convert binary mask to block representation.
# ind_blk = convert_mask_to_block_indices(mask, [1, 3, 3, 1], [1, 1, 1, 1], [3, 3, 1, 1],
# [1, 1, 1, 1], 'SAME', .1)
#
# # Sparse convolution.
# x = tf.constant(np.ones([1, 5, 5, 1], dtype=np.float32))
# w = tf.constant(np.ones([3, 3, 1, 1], dtype=np.float32))
# y = sparse_conv2d(x, w, ind_blk, [1, 1, 1, 1], 'SAME')
#
# with tf.Session():
# print(np.squeeze(y.eval()))
#
# >> Output
# >> [[ 0. 6. 6. 6. 0.]
# [ 6. 9. 9. 9. 0.]
# [ 6. 9. 9. 9. 0.]
# [ 6. 9. 0. 0. 0.]
# [ 0. 0. 0. 0. 0.]]
# ```
from __future__ import division, print_function
import os
import numpy as np
import tensorflow as tf
from tensorflow.python.framework import ops
from collections import namedtuple
import logger
from tf_conv_dims import calc_padding_4d, calc_out_size_4d, calc_out_size_4d_np
log = logger.get()
sbnet_module = tf.load_op_library('../sbnet_ops/libsbnet.so')
BlockParams = namedtuple('BlockParams', ['bsize', 'bsize_out', 'boffset', 'bcount', 'bstrides'])
# Gradients registration.
@ops.RegisterGradient("SparseGather")
def _sparse_gather_grad(op, grad):
# x is shaped like full tensor [NHWC]
# grad is shaped as gathered blocks [Nblocks*BH*BW*C]
x = op.inputs[0]
binCounts = op.inputs[1]
activeBlockIndices = op.inputs[2]
bsize = op.inputs[3]
bstride = op.inputs[4]
boffset = op.inputs[5]
transpose = op.get_attr("transpose")
# if scatter is overlapping then gradient should still work
# because we are overwriting the same values
# compute dOutput/dx
result = sbnet_module.sparse_scatter(
grad,
binCounts,
activeBlockIndices,
tf.zeros_like(x), # output base tensor to add on top of
dynamic_bsize=bsize,
dynamic_bstride=bstride,
dynamic_boffset=boffset,
add=True,
transpose=transpose,
atomic=True)
return [result, None, None, None, None, None] # no gradients wrt indices or block params
@ops.RegisterGradient("SparseScatter")
def _sparse_scatter_grad(op, grad):
# x is shaped like blocked tensor of gathered blocks [Nblocks*BH*BW*C]
# grad is shaped as output tensor [NHWC]
blocksX = op.inputs[0]
binCounts = op.inputs[1]
activeBlockIndices = op.inputs[2]
ybase = op.inputs[3]
bsize = op.inputs[4]
bstride = op.inputs[5]
boffset = op.inputs[6]
doAdd = op.get_attr("add")
dout_dx = sbnet_module.sparse_gather(
grad,
binCounts,
activeBlockIndices,
dynamic_bsize=bsize,
dynamic_bstride=bstride,
dynamic_boffset=boffset)
# return a list of gradients of output with respect to each input
if not doAdd:
# scatter blocks of zeroes over a base tensor of ones to compute a stamp-out gradient mask for dy_dybase
stamp_out_blocks = sbnet_module.sparse_scatter(
tf.zeros_like(blocksX),
binCounts,
activeBlockIndices,
tf.ones_like(grad),
dynamic_bsize=bsize,
dynamic_bstride=bstride,
dynamic_boffset=boffset,
add=False)
dy_dybase = grad * stamp_out_blocks
return [dout_dx, None, None, dy_dybase, None, None, None]
else:
# d(x+ybase)/dybase = 1, so just pass back grad as dout_dybase
return [dout_dx, None, None, grad, None, None, None]
def _pad_input(x, ksize, strides, padding, bsize=None, bstrides=None):
"""Pads the input tensor.
Optional to pass in block strides. The right hand side padding will be increased if the last
block does not fit in (no effect on the convolution results.
:param x: [Tensor] [N, H, W, C]. input tensor, dtype float32.
:param ksize: [list] List of 4 int. Sparse convolution kernel size.
:param strides: [list] List of 4 int. Sparse convolution stride size.
:param padding: [string] `VALID` or `SAME`, padding method for sparse convolution.
:param bsize [list] List of 4 int. Block size. Optional.
:param bstrides: [list] List of 4 int. Block strides. Optional.
:return [Tensor] [N, H+Ph, W+Pw, C]. Padded input tensor.
"""
x_shape = tf.shape(x)
if padding == 'SAME':
pad_h0, pad_h1, pad_w0, pad_w1 = calc_padding_4d(x_shape, ksize, strides, padding)
if bstrides is not None:
# Here we do not use the standard padding on the right hand side.
# If the convolution results is larger than expected, the scatter function will not use
# out-of-boundary points.
assert bsize is not None, 'Must pass in bsize and bstrides together.'
h = x_shape[1] + pad_h0 + pad_h1
w = x_shape[2] + pad_w0 + pad_w1
pad_h1 += tf.mod(-h + bsize[1], bstrides[1])
pad_w1 += tf.mod(-w + bsize[2], bstrides[2])
return tf.pad(x, [[0, 0], [pad_h0, pad_h1], [pad_w0, pad_w1], [0, 0]])
else:
if bstrides is not None:
assert bsize is not None, 'Must pass in bsize and bstrides together.'
h = x_shape[1]
w = x_shape[2]
pad_h1 = tf.mod(-h + bsize[1], bstrides[1])
pad_w1 = tf.mod(-w + bsize[2], bstrides[2])
return tf.cond(
tf.logical_or(tf.greater(pad_h1, 0), tf.greater(pad_w1, 0)),
lambda: tf.pad(x, [[0, 0], [0, pad_h1], [0, pad_w1], [0, 0]]), lambda: x)
else:
return x
def _get_offset_array_tf(shape):
"""
Computes the offset array used to upsample indices with TensorFlow.
:param shape: [list] Window shape.
"""
center = [(ss - 1) // 2 for ss in shape]
axes = [tf.range(-cc, ss - cc, dtype=tf.int32) for cc, ss in zip(center, shape)]
# Broadcast and match dimension.
if len(shape) > 1:
for jj in range(len(shape)):
for ii in range(len(shape) + 1):
if ii != jj:
axes[jj] = tf.expand_dims(axes[jj], ii)
for jj in range(len(shape)):
shape_ = [ss for ss in shape] + [1]
shape_[jj] = 1
axes[jj] = tf.tile(axes[jj], shape_)
offset = tf.concat(axes, len(shape))
return offset
def _get_offset_array(shape):
"""
Computes the offset array used to upsample indices with NumPy (static).
:param shape: [list] Window shape.
"""
center = [int(ss - 1) // 2 for ss in shape]
axes = [np.arange(-cc, int(ss) - cc).astype(np.int32) for cc, ss in zip(center, shape)]
if len(shape) > 1:
for jj in range(len(shape)):
for ii in range(len(shape) + 1):
if ii != jj:
axes[jj] = np.expand_dims(axes[jj], ii)
for jj in range(len(shape)):
shape_ = [int(ss) for ss in shape] + [1]
shape_[jj] = 1
axes[jj] = np.tile(axes[jj], shape_)
offset = np.concatenate(axes, len(shape))
return tf.constant(offset)
else:
return tf.constant(axes[0])
def _calc_block_strides(bsize, ksize, strides):
"""Calculates strides for blocks.
:param bsize: [list] List of 4 int. Size of blocks, or downsample ratio.
:param ksize: [list] List of 4 int. Sparse convolution kernel size.
:param strides: [list] List of 4 int. Sparse convolution strides.
:return [list] List of 4 int. Block strides.
"""
return [1, bsize[1] - ksize[0] + strides[1], bsize[2] - ksize[1] + strides[2], 1]
def upsample_indices(indices, ksize, strides):
"""
Upsamples the indices to have all indices in a rectangle.
:param indices: [Tensor] [M, 3]. Center locations (N, H, W) of the M rectangles.
Dtype int32.
:param ksize: [list] Size of the rectangle, or downsample ratio.
:param strides: [list] Strides of the pooling operation.
:return [Tensor] [M, h, w, 3]. Locations of all pixels in the rectangles.
Dtype int32.
"""
assert len(indices.get_shape()) == 2, 'Expect indices rank = 2'
assert ksize[0] == ksize[3] == 1, 'Expect first and last dimensions of ksize = 1'
assert strides[0] == strides[3] == 1, 'Expect first and last dimensions of strides = 1, {}'.format(
strides)
h_scale = strides[1]
w_scale = strides[2]
scale = tf.stack([1, h_scale, w_scale])
indices *= scale
# Since we always use VALID to perform pooling, shift is needed here.
shift = tf.stack([0, (ksize[1] - 1) // 2, (ksize[2] - 1) // 2])
indices += shift
indices_ = tf.expand_dims(tf.expand_dims(indices, 1), 2)
# indices_ = tf.tile(indices_, [1, ksize[1], ksize[2], 1])
offset = _get_offset_array(ksize[0:3])
indices_ += offset
return indices_
def convert_mask_to_indices(mask, bsize, ksize, strides, padding, tol):
"""
Converts a binary mask to sparse indices.
:param mask: [Tensor] [N, H, W]. 1 indicates non-sparse locations. Dtype float32.
:param bsize: [list] List of 4 int. Size of blocks, or downsample ratio.
:param ksize: [list] List of 4 int. Sparse convolution kernel size.
:param strides: [list] List of 4 int. Sparse convolution stride size.
Currently only supports when,
1) (bsize[1] - ksize[0]) % strides[1] == 0 and,
2) (bsize[2] - ksize[1]) % strides[2] == 0
:param padding: [string] `VALID` or `SAME`, padding method for sparse convolution.
:param tol: [float] Lower bound of occupancy for creating a rectangle.
:return [Tensor] [M, 3]. Center locations (N, H, W) of M rectangles. Dtype int32.
"""
ERR_MSG_RANK = 'Expect mask rank = 3'
ERR_MSG_DIV = 'Expect `stride` divides `bsize` - `ksize`. stride {}, bsize {}, ksize {}.'
ERR_MSG_DIM = 'Expect first and last dimensions of strides = 1. Dim {}.'
assert len(mask.get_shape()) == 3, ERR_MSG_RANK
assert type(bsize) in [list, tuple], '`bsize` needs to be a list or tuple.'
assert type(ksize) in [list, tuple], '`ksize` needs to be a list or tuple.'
assert type(strides) in [list, tuple], '`strides` needs to be a list or tuple.'
assert (bsize[1] - ksize[0]) % strides[1] == 0, ERR_MSG_DIV.format(
strides[1], bsize[1], ksize[0])
assert (bsize[2] - ksize[1]) % strides[2] == 0, ERR_MSG_DIV.format(
strides[2], bsize[2], ksize[1])
assert strides[0] == strides[3] == 1, ERR_MSG_DIM.format(strides)
bstrides = _calc_block_strides(bsize, ksize, strides)
# Pad mask.
mask_ = tf.expand_dims(mask, 3)
mask_ = _pad_input(mask_, ksize, strides, padding, bsize=bsize, bstrides=bstrides)
mask_ = tf.nn.max_pool(mask_, bsize, bstrides, 'VALID') # Blocks are always valid conv.
mask_ = tf.squeeze(mask_, [3])
indices = tf.where(tf.greater(mask_, tol))
indices = tf.cast(indices, tf.int32)
return indices
def convert_mask_to_block_indices(mask, bsize, ksize, strides, padding, tol):
"""
Converts a binary mask to block sparse indices.
:param mask: [Tensor] [N, H, W]. 1 indicates non-sparse locations. Dtype float32.
:param bsize: [list] List of 4 int. Size of blocks, or downsample ratio.
:param ksize: [list] List of 4 int. Sparse convolution kernel size.
:param strides: [list] List of 4 int. Sparse convolution stride size.
Currently only supports when,
1) (bsize[1] - ksize[0]) % strides[1] == 0 and,
2) (bsize[2] - ksize[1]) % strides[2] == 0
:param padding: [string] `VALID` or `SAME`, padding method for sparse convolution.
:param tol: [float] Lower bound of occupancy for creating a rectangle.
:return [Tensor] [M, h, w, 3]. Pixel locations of M rectangles. Dtype int32.
"""
indices = convert_mask_to_indices(mask, bsize, ksize, strides, padding, tol)
bstrides = _calc_block_strides(bsize, ksize, strides)
blk_indices = upsample_indices(indices, bsize, bstrides)
return blk_indices
def calc_block_params(in_size, bsize, ksize, strides, padding):
"""
Calculates block parameters for a single convolution layer.
:param in_size: [list] List of 4 int, or a Tensor of size 4. Size of the convolution input.
:param bsize: [list] List of 4 int. Size of blocks, or downsample ratio.
:param ksize: [list] List of 4 int. Sparse convolution kernel size.
:param strides: [list] List of 4 int. Sparse convolution stride size.
Currently only supports when,
1) (bsize[1] - ksize[0]) % strides[1] == 0 and,
2) (bsize[2] - ksize[1]) % strides[2] == 0
:param padding: [string] `VALID` or `SAME`, padding method for sparse convolution.
:return [tuple]
bsize:
bsize_out:
boffset:
bcount:
bstrides:
"""
static = not (type(in_size) == tf.Tensor)
assert ((bsize[1] - ksize[0]) % strides[1] == 0)
assert ((bsize[2] - ksize[1]) % strides[2] == 0)
bstrides = _calc_block_strides(bsize, ksize, strides)
pad_h0, pad_h1, pad_w0, pad_w1 = calc_padding_4d(in_size, ksize, strides, padding)
h = in_size[1]
w = in_size[2]
# Make padding divides blocks.
pad_h1 += (-h + bsize[1]) % bstrides[1]
pad_w1 += (-w + bsize[2]) % bstrides[2]
boffset = [-pad_h0, -pad_w0]
x_pad_shape = [
in_size[0], in_size[1] + pad_h0 + pad_h1, in_size[2] + pad_w0 + pad_w1, in_size[3]
]
if static:
out_shape = calc_out_size_4d_np(x_pad_shape, [bsize[1], bsize[2], 1, 1], bstrides, 'VALID')
else:
out_shape = calc_out_size_4d(x_pad_shape, [bsize[1], bsize[2], 1, 1], bstrides, 'VALID')
bcount = [out_shape[1], out_shape[2]]
bsize_out = calc_out_size_4d_np(bsize, ksize, strides, 'VALID')
bsize = bsize[1:3]
bstrides = bstrides[1:3]
bsize_out = bsize_out[1:3]
if static:
assert (pad_h0 == -boffset[0])
assert (pad_w0 == -boffset[1])
for i, siz in zip([0, 1], [h, w]):
# make sure last block is inside
err_msg = 'Making sure last block is inside boffset {} bstrides {} bcount {} size {}'.format(
boffset[i], bstrides[i], bcount[i], siz)
assert (boffset[i] + bstrides[i] * (bcount[i] - 1) < siz), err_msg
return BlockParams(
bsize=bsize, bsize_out=bsize_out, boffset=boffset, bcount=bcount, bstrides=bstrides)
def calc_block_params_res_block(in_size, bsize, ksize_list, strides, padding):
"""
Calculates block parameters for a residual block.
:param in_size: [list] List of 4 int. Size of the residual block input.
:param bsize: [list] List of 4 int. Size of blocks, or downsample ratio, for each
convolution layer in the residual block.
:param ksize: [list] List of list of 4 int. Sparse convolution kernel size.
:param strides: [list] List of 4 int. Sparse convolution stride size, for the first
convolution in the residual block.
Currently only supports when,
1) (bsize[1] - ksize[0]) % strides[1] == 0 and,
2) (bsize[2] - ksize[1]) % strides[2] == 0
:param padding: [string] `VALID` or `SAME`, padding method for sparse convolution.
:return
"""
# Use the receptive field as the kernel size.
ksize_h = 1 + sum([kk[0] - 1 for kk in ksize_list])
ksize_w = 1 + sum([kk[1] - 1 for kk in ksize_list])
ksize_real = [ksize_h, ksize_w, 1, 1]
return calc_block_params(in_size, bsize, ksize_real, strides, padding)
def convert_mask_to_indices_custom(mask, block_params, tol, avgpool=False):
"""
Converts a binary mask to sparse index format for custom CUDA kernel and TF ops.
:param mask: [Tensor] [N, H, W]. 1 indicates non-sparse locations. Dtype float32.
:param block_params [tuple] Contains bsize, boffset, bcount, bstrides.
:param tol: [float] Lower bound of occupancy for creating a rectangle.
:return [tuple]
bin_counts: [Tensor]. Number of active locations for each bin.
active_block_indices: [Tensor]. [M]. Center locations of M rectangles. Dtype int64.
"""
def to_tensor(a, dtype):
if type(a) == tf.Tensor:
if a.dtype != dtype:
return tf.cast(a, dtype)
else:
return a
elif type(a) == list:
if type(a[0]) == tf.Tensor:
return tf.stack(a, 0)
else:
return tf.constant(a, dtype)
else:
print(type(a))
return tf.constant(a, dtype)
return sbnet_module.reduce_mask(
mask,
block_params.bcount,
dynamic_bsize=to_tensor(block_params.bsize, tf.int32),
dynamic_bstride=to_tensor(block_params.bstrides, tf.int32),
dynamic_boffset=to_tensor(block_params.boffset, tf.int32),
avgpool=avgpool,
tol=tol)
def sparse_conv2d(x, w, blk_indices, strides, padding):
"""
Performs 2D convolution on a sparse feature map, given indices.
Naive python implementation of sparse convolution using gather and scatter.
:param x: [Tensor] [N, H, W, C]. Input activation tensor, dtype float32.
:param w: [Tensor] [I, J, C, K]. Convolution kernel, dtype float32.
:param blk_indices: [Tensor] [M, h, w, 3]. Block indices of rectangles.
:param strides: [list] List of 4 int, convolution strides.
:param padding: [string] `VALID` or `SAME`, padding method for sparse convolution.
:return [Tensor] [N, H', W', C]. Convolution results.
"""
blk_shape = tf.shape(blk_indices)
blk_indices_ = tf.reshape(blk_indices, [-1, 3])
ksize = tf.shape(w)
# Calculate the block strides.
bstrides = _calc_block_strides(blk_shape, ksize, strides)
# Calculate the output size.
x_shape = tf.shape(x)
out_shape = calc_out_size_4d(x_shape, ksize, strides, padding)
# Pad input.
x_ = _pad_input(
x, ksize, strides, padding, bsize=[1, blk_shape[1], blk_shape[2], 1], bstrides=bstrides)
# Convolution when number of indices is larger than zero.
def _conv_nonzero():
# Gather patches.
p = tf.gather_nd(x_, blk_indices_)
# Reshape patches.
p = tf.reshape(p, [blk_shape[0], blk_shape[1], blk_shape[2], -1])
# Convolution on patches.
q = tf.nn.conv2d(p, w, strides, 'VALID', use_cudnn_on_gpu=True)
# Paste convolution results.
q_shape = tf.shape(q)
def _strides_gt_one():
# Calculate output indices when strides > 1.
blk_indices_crop = tf.strided_slice(blk_indices, [0, 0, 0, 0], [
blk_shape[0], q_shape[1] * strides[1], q_shape[2] * strides[2], 3
], strides)
blk_indices_crop = blk_indices_crop // tf.stack([1, strides[1], strides[2]])
return blk_indices_crop
def _strides_one():
# Calculate otuput indices when strides = 1.
return blk_indices[:, :q_shape[1], :q_shape[2], :]
strides_gt_one = tf.logical_or(tf.greater(strides[1], 1), tf.greater(strides[2], 1))
blk_indices_crop = tf.cond(strides_gt_one, _strides_gt_one, _strides_one)
y = tf.scatter_nd(blk_indices_crop, q, out_shape)
return y
return tf.cond(
tf.equal(tf.size(blk_indices_), 0), lambda: tf.zeros(out_shape, dtype=x.dtype),
_conv_nonzero)
# returns an int64 start timer handle that should be passed to cuda_timer_end_op
def cuda_timer_start_op():
return sbnet_module.cuda_timer_start()
# returns a float
def cuda_timer_end_op(start_timer):
return sbnet_module.cuda_timer_end(start_timer)
def sparse_conv2d_custom(x,
w,
indices,
block_params,
strides,
use_var=False,
transpose=False,
atomic=False):
assert strides[1] == strides[2] == 1, 'Only accept strides=1'
# TODO: make the gather op also accepting a Tensor for bsize, ksize, etc.
ksize = [int(ss) for ss in w.get_shape()]
p = sbnet_module.sparse_gather(
x,
indices.bin_counts,
indices.active_block_indices,
dynamic_bsize=block_params.bsize,
dynamic_bstride=block_params.bstrides,
dynamic_boffset=block_params.boffset,
transpose=transpose)
# Convolution on patches.
if transpose:
q = tf.nn.conv2d(p, w, strides, 'VALID', data_format='NCHW', use_cudnn_on_gpu=True)
else:
q = tf.nn.conv2d(p, w, strides, 'VALID', use_cudnn_on_gpu=True)
# Allocate output tensor.
if use_var:
y = sbnet_module.sparse_scatter_var(
q,
indices.bin_counts,
indices.active_block_indices,
x,
dynamic_bsize=tf.constant(block_params.bsize_out, dtype=tf.int32),
dynamic_bstride=tf.constant(block_params.bstrides, dtype=tf.int32),
dynamic_boffset=tf.constant([0, 0], dtype=tf.int32),
add=False,
transpose=transpose,
atomic=atomic)
else:
y = sbnet_module.sparse_scatter(
q,
indices.bin_counts,
indices.active_block_indices,
x,
dynamic_bsize=tf.constant(block_params.bsize_out, dtype=tf.int32),
dynamic_bstride=tf.constant(block_params.bsize_out, dtype=tf.int32),
dynamic_boffset=tf.constant([0, 0], dtype=tf.int32),
add=False,
transpose=transpose,
atomic=atomic)
return y
def _batch_norm(name, x, is_training, data_format='NHWC'):
"""
Applies batch normalization.
:param name: [string] Name of the variable scope.
:param x: [Tensor] Tensor to apply BN on.
:param is_training [bool] Whether in training mode.
:return: [Tensor] Normalized activation.
"""
bn = tf.contrib.layers.batch_norm(
x, fused=True, scale=True, data_format=data_format, is_training=is_training, scope=name)
return bn
# log.warning('Not using BN to test performance at inference time')
# return x
def _relu(name, x):
"""
Applies ReLU function.
:param name: [string] Name of the op.
:param x: [Tensor] Input to the function.
:return: [Tensor] Output of the function.
"""
return tf.nn.relu(x, name=name)
# log.warning('Not using ReLU to test performance at inference time')
# return x
def _stride_arr(n, data_format='NHWC'):
"""Makes strides array for downsampling convolution."""
if data_format == 'NHWC':
return [1, n, n, 1]
elif data_format == 'NCHW':
return [1, 1, n, n]
else:
raise ValueError('Unknown data format: {}'.format(data_format))
def _conv(name,
x,
ksize,
strides,
padding,
data_format='NHWC',
weight_decay=None,
dtype=tf.float32,
weights_on_cpu=False):
"""
Convolution layer.
:param name [string] Name of the op.
:param x: [Tensor] Input to the downsample.
:param ksize [list] 4-D kernel shape.
:param strides: [list] 4-D strides array.
:param padding: [string] Convolution padding strategy.
:param data_format: [string] 'NHWC' or 'NCHW'.
:return: [Tensor] Convolution output.
"""
with tf.variable_scope(name):
in_filters = ksize[2]
out_filters = ksize[3]
n = ksize[0] * ksize[1] * out_filters
init = tf.truncated_normal_initializer(
mean=0.0, stddev=np.sqrt(2.0 / n), seed=0, dtype=dtype)
def _reg(x):
if weight_decay is not None:
return tf.multiply(tf.nn.l2_loss(x), weight_decay)
else:
return None
if weight_decay is not None:
reg = _reg
else:
reg = None
kernel = tf.get_variable(
'w', ksize, initializer=init, regularizer=reg, dtype=dtype, trainable=True)
return tf.nn.conv2d(
x, kernel, strides, padding, data_format=data_format, use_cudnn_on_gpu=True)
def _bottleneck_residual(x,
ksize_list,
strides,
padding,
is_training,
data_format='NHWC',
no_activation=False):
with tf.variable_scope('sub1'):
if not no_activation:
x = _batch_norm('bn1', x, is_training, data_format)
x = _relu('relu1', x)
STRIDES_ERR_MSG = 'Strides height and width are not the same.'
if data_format == 'NHWC':
assert strides[1] == strides[2], STRIDES_ERR_MSG
elif data_format == 'NCHW':
assert strides[2] == strides[3], STRIDES_ERR_MSG
x = _conv(
'conv1',
x,
ksize_list[0],
_stride_arr(strides[2], data_format),
padding,
data_format=data_format)
with tf.variable_scope('sub2'):
x = _batch_norm('bn2', x, is_training, data_format)
x = _relu('relu2', x)
x = _conv(
'conv2',
x,
ksize_list[1],
_stride_arr(1, data_format),
padding,
data_format=data_format)
with tf.variable_scope('sub3'):
x = _batch_norm('bn3', x, is_training, data_format)
x = _relu('relu3', x)
x = _conv(
'conv3',
x,
ksize_list[2],
_stride_arr(1, data_format),
padding,
data_format=data_format)
return x
def res_block_bottleneck(x,
ksize_list,
strides,
is_training,
data_format='NHWC',
w_project=None,
no_activation=False):
"""
Computes y = x + F(x), where F(x) is the residual block function. At downsample layers, applies
a downsample function on x as well.
"""
if w_project is not None:
x_ = tf.conv2d(x, w_project, strides, padding='SAME', data_format=data_format)
else:
x_ = x
return x_ + _bottleneck_residual(
x,
ksize_list,
strides,
'SAME',
is_training,
data_format=data_format,
no_activation=no_activation)
def sparse_res_block_bottleneck(x,
ksize_list,
indices,
block_params,
strides,
is_training,
data_format='NHWC',
w_project=None,
no_activation=False,
use_var=False):
"""
Computes y = x + F(x), where F(x) is the residual block function. At downsample layers, applies
a downsample function on x as well.
:param x: [Tensor] [N, H, W, C]. Input activation tensor, dtype float32.
:param ksize_list: [list] List of list of 4 int. Kernel size for each convolution
layer in the residual block.
:param indices: [tuple] Non-sparse locations returned by reduce_mask.
:param block_params: [tuple] BlockParam namedtuple.
:param
:return
"""
transpose = True if data_format == 'NCHW' else False
p = sbnet_module.sparse_gather(
x,
indices.bin_counts,
indices.active_block_indices,
dynamic_bsize=block_params.bsize,
dynamic_bstride=block_params.bstrides,
dynamic_boffset=block_params.boffset,
transpose=transpose)
if w_project is not None:
x = tf.conv2d(x, w_project, strides, padding='SAME')
# Set shape for BN in the residual function.
if transpose:
p.set_shape([None, x.get_shape()[3], block_params.bsize[0], block_params.bsize[1]])
else:
p.set_shape([None, block_params.bsize[0], block_params.bsize[1], x.get_shape()[3]])
q = _bottleneck_residual(
p,
ksize_list,
strides,
'VALID',
is_training,
data_format=data_format,
no_activation=no_activation)
if use_var:
y = sbnet_module.sparse_scatter_var(
q,
indices.bin_counts,
indices.active_block_indices,
x,
dynamic_bsize=tf.constant(block_params.bsize_out, dtype=tf.int32),
dynamic_bstride=tf.constant(block_params.bsize_out, dtype=tf.int32),
dynamic_boffset=tf.constant([0, 0], dtype=tf.int32),
add=True,
transpose=transpose)
else:
y = sbnet_module.sparse_scatter(
q,
indices.bin_counts,
indices.active_block_indices,
x,
dynamic_bsize=tf.constant(block_params.bsize_out, dtype=tf.int32),
dynamic_bstride=tf.constant(block_params.bsize_out, dtype=tf.int32),
dynamic_boffset=tf.constant([0, 0], dtype=tf.int32),
add=True,
transpose=transpose)
return y
def sparse_conv2d_matmul(x, w, blk_indices, strides, padding):
"""
Performs 2D convolution using matrix multiplication on a sparse feature map.
Naive python implementation of sparse convolution using gather and scatter.
:param x: [Tensor] [N, H, W, C]. Input activation tensor, dtype float32.
:param w: [Tensor] [I, J, C, K]. Convolution kernel, dtype float32.
:param blk_indices: [Tensor] [M, h, w, 3]. Block indices of rectangles.
:param strides: [list] List of 4 int, convolution strides.
:param padding: [string] `VALID` or `SAME`, padding method for sparse convolution.
:return [Tensor] [N, H', W', C]. Convolution results.
"""
blk_indices_ = tf.reshape(blk_indices, [-1, 3])
blk_shape = tf.shape(blk_indices)
ksize = tf.shape(w)
# Calculate the block strides.
bstrides = _calc_block_strides(blk_shape, ksize, strides)
# Calculate the output size.
x_shape = tf.shape(x)
out_shape = calc_out_size_4d(x_shape, ksize, strides, padding)
# Pad input.
x_ = _pad_input(
x, ksize, strides, padding, bsize=[1, blk_shape[1], blk_shape[2], 1], bstrides=bstrides)
# In matrix multiplication mode, the block patch should be the same as the kernel size.
assert_shape = tf.assert_equal(
tf.stack([blk_shape[1], blk_shape[2]]),
tf.stack([ksize[0], ksize[1]]),
message='Expect blk_indices.shape[1] == w.shape[0] and blk_indices.shape[2] == w.shape[1].')
# Currently we do not support strides > 1 in this matrix multiplication mode. Could be supported
# in the future.
assert_strides = tf.assert_equal(
tf.cast(tf.stack([strides[1], strides[2]]), tf.int64),
tf.constant([1, 1], dtype=tf.int64),
message='Strides > 1 not supported.')
# Convolution when number of indices is larger than zero.
def _conv_nonzero():
# Gather patches.
p = tf.gather_nd(x_, blk_indices_)
p_ = tf.reshape(p, [-1, ksize[0] * ksize[1] * ksize[2]])
# Convolution on patches.
w_ = tf.reshape(w, [ksize[0] * ksize[1] * ksize[2], -1])
q = tf.matmul(p_, w_)
# Center locations.
blk_indices_crop = blk_indices[:, 0, 0, :]
# Project back to an image.
y = tf.scatter_nd(blk_indices_crop, q, out_shape)
return y
with tf.control_dependencies([assert_shape, assert_strides]):
return tf.cond(
tf.equal(tf.size(blk_indices_), 0), lambda: tf.zeros(out_shape, dtype=x.dtype),
_conv_nonzero)
def mask_conv2d(x, w, mask, strides, padding):
"""Masked 2D convolution. Used to check 2D sparse convolution.
:param x: [Tensor] Convolution feature map, 4D, dtype float32.
:param w: [Tensor] Convolution kernel, 4D, dtype float32.
:param mask: [Tensor] Binary mask, 3D or 4D, [N, H, W] or [N, H, W, 1], dtype float32.
:param strides: [list] List of 4 int. Convolution strides.
:param padding: [string] Convolution padding method, `VALID` or `SAME`.
"""
assert len(mask.get_shape()) in [3, 4], 'Mask shape must be 3D or 4D.'
if len(mask.get_shape()) == 3:
mask_ = tf.expand_dims(mask, 3)
elif len(mask.get_shape()) == 4:
mask_ = mask
assert mask.get_shape()[-1] == 1, '4D mask last dimension must be 1.'
ksize = [int(ss) for ss in w.get_shape()]
psize = [1, ksize[0], ksize[1], 1]
mask_ = tf.nn.max_pool(mask_, psize, strides, padding)
return tf.nn.conv2d(x, w, strides, padding) * mask_
| [
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yougoforward/tensorpackwithmscnn | 8d5ae5cc2cfcf2e4e53b4d1064ac9e727f736d09 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# File: mnist-addition.py
# Author: Yuxin Wu <[email protected]>
import cv2
import numpy as np
import tensorflow as tf
import os
import argparse
from tensorpack import *
from tensorpack.dataflow import dataset
from tensorpack.tfutils import sesscreate, optimizer, summary
IMAGE_SIZE = 42
WARP_TARGET_SIZE = 28
HALF_DIFF = (IMAGE_SIZE - WARP_TARGET_SIZE) // 2
class Model(ModelDesc):
def _get_inputs(self):
return [InputDesc(tf.float32, (None, IMAGE_SIZE, IMAGE_SIZE, 2), 'input'),
InputDesc(tf.int32, (None,), 'label')]
def _build_graph(self, inputs):
xys = np.array([(y, x, 1) for y in range(WARP_TARGET_SIZE)
for x in range(WARP_TARGET_SIZE)], dtype='float32')
xys = tf.constant(xys, dtype=tf.float32, name='xys') # p x 3
image, label = inputs
image = image / 255.0 - 0.5 # bhw2
def get_stn(image):
stn = (LinearWrap(image)
.AvgPooling('downsample', 2)
.Conv2D('conv0', 20, 5, padding='VALID')
.MaxPooling('pool0', 2)
.Conv2D('conv1', 20, 5, padding='VALID')
.FullyConnected('fc1', out_dim=32)
.FullyConnected('fct', out_dim=6, nl=tf.identity,
W_init=tf.constant_initializer(),
b_init=tf.constant_initializer([1, 0, HALF_DIFF, 0, 1, HALF_DIFF]))())
# output 6 parameters for affine transformation
stn = tf.reshape(stn, [-1, 2, 3], name='affine') # bx2x3
stn = tf.reshape(tf.transpose(stn, [2, 0, 1]), [3, -1]) # 3 x (bx2)
coor = tf.reshape(tf.matmul(xys, stn),
[WARP_TARGET_SIZE, WARP_TARGET_SIZE, -1, 2])
coor = tf.transpose(coor, [2, 0, 1, 3], 'sampled_coords') # b h w 2
sampled = ImageSample('warp', [image, coor], borderMode='constant')
return sampled
with argscope([Conv2D, FullyConnected], nl=tf.nn.relu):
with tf.variable_scope('STN1'):
sampled1 = get_stn(image)
with tf.variable_scope('STN2'):
sampled2 = get_stn(image)
# For visualization in tensorboard
with tf.name_scope('visualization'):
padded1 = tf.pad(sampled1, [[0, 0], [HALF_DIFF, HALF_DIFF], [HALF_DIFF, HALF_DIFF], [0, 0]])
padded2 = tf.pad(sampled2, [[0, 0], [HALF_DIFF, HALF_DIFF], [HALF_DIFF, HALF_DIFF], [0, 0]])
img_orig = tf.concat([image[:, :, :, 0], image[:, :, :, 1]], 1) # b x 2h x w
transform1 = tf.concat([padded1[:, :, :, 0], padded1[:, :, :, 1]], 1)
transform2 = tf.concat([padded2[:, :, :, 0], padded2[:, :, :, 1]], 1)
stacked = tf.concat([img_orig, transform1, transform2], 2, 'viz')
tf.summary.image('visualize',
tf.expand_dims(stacked, -1), max_outputs=30)
sampled = tf.concat([sampled1, sampled2], 3, 'sampled_concat')
logits = (LinearWrap(sampled)
.FullyConnected('fc1', out_dim=256, nl=tf.nn.relu)
.FullyConnected('fc2', out_dim=128, nl=tf.nn.relu)
.FullyConnected('fct', out_dim=19, nl=tf.identity)())
tf.nn.softmax(logits, name='prob')
cost = tf.nn.sparse_softmax_cross_entropy_with_logits(logits=logits, labels=label)
cost = tf.reduce_mean(cost, name='cross_entropy_loss')
wrong = tf.to_float(tf.logical_not(tf.nn.in_top_k(logits, label, 1)), name='incorrect_vector')
summary.add_moving_summary(tf.reduce_mean(wrong, name='train_error'))
wd_cost = tf.multiply(1e-5, regularize_cost('fc.*/W', tf.nn.l2_loss),
name='regularize_loss')
summary.add_moving_summary(cost, wd_cost)
self.cost = tf.add_n([wd_cost, cost], name='cost')
def _get_optimizer(self):
lr = tf.get_variable('learning_rate', initializer=5e-4, trainable=False)
opt = tf.train.AdamOptimizer(lr, epsilon=1e-3)
return optimizer.apply_grad_processors(
opt, [
gradproc.ScaleGradient(('STN.*', 0.1)),
gradproc.SummaryGradient()])
def get_data(isTrain):
ds = dataset.Mnist('train' if isTrain else 'test')
# create augmentation for both training and testing
augs = [
imgaug.MapImage(lambda x: x * 255.0),
imgaug.RandomResize((0.7, 1.2), (0.7, 1.2)),
imgaug.RotationAndCropValid(45),
imgaug.RandomPaste((IMAGE_SIZE, IMAGE_SIZE)),
imgaug.SaltPepperNoise(white_prob=0.01, black_prob=0.01)
]
ds = AugmentImageComponent(ds, augs)
ds = JoinData([ds, ds])
# stack the two digits into two channels, and label it with the sum
ds = MapData(ds, lambda dp: [np.stack([dp[0], dp[2]], axis=2), dp[1] + dp[3]])
ds = BatchData(ds, 128)
return ds
def view_warp(modelpath):
pred = OfflinePredictor(PredictConfig(
session_init=get_model_loader(modelpath),
model=Model(),
input_names=['input'],
output_names=['visualization/viz', 'STN1/affine', 'STN2/affine']))
xys = np.array([[0, 0, 1],
[WARP_TARGET_SIZE, 0, 1],
[WARP_TARGET_SIZE, WARP_TARGET_SIZE, 1],
[0, WARP_TARGET_SIZE, 1]], dtype='float32')
def draw_rect(img, affine, c, offset=[0, 0]):
a = np.transpose(affine) # 3x2
a = (np.matmul(xys, a) + offset).astype('int32')
cv2.line(img, tuple(a[0][::-1]), tuple(a[1][::-1]), c)
cv2.line(img, tuple(a[1][::-1]), tuple(a[2][::-1]), c)
cv2.line(img, tuple(a[2][::-1]), tuple(a[3][::-1]), c)
cv2.line(img, tuple(a[3][::-1]), tuple(a[0][::-1]), c)
ds = get_data(False)
ds.reset_state()
for k in ds.get_data():
img, label = k
outputs, affine1, affine2 = pred(img)
for idx, viz in enumerate(outputs):
viz = cv2.cvtColor(viz, cv2.COLOR_GRAY2BGR)
# Here we assume the second branch focuses on the first digit
draw_rect(viz, affine2[idx], (0, 0, 255))
draw_rect(viz, affine1[idx], (0, 0, 255), offset=[IMAGE_SIZE, 0])
cv2.imwrite('{:03d}.png'.format(idx), (viz + 0.5) * 255)
break
def get_config():
logger.auto_set_dir()
dataset_train, dataset_test = get_data(True), get_data(False)
steps_per_epoch = dataset_train.size() * 5
return TrainConfig(
model=Model(),
data=QueueInput(dataset_train),
callbacks=[
ModelSaver(),
InferenceRunner(dataset_test,
[ScalarStats('cost'), ClassificationError()]),
ScheduledHyperParamSetter('learning_rate', [(200, 1e-4)])
],
session_creator=sesscreate.NewSessionCreator(
config=get_default_sess_config(0.5)),
steps_per_epoch=steps_per_epoch,
max_epoch=500,
)
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument('--gpu', help='comma separated list of GPU(s) to use.')
parser.add_argument('--load', help='load model')
parser.add_argument('--view', action='store_true')
args = parser.parse_args()
if args.gpu:
os.environ['CUDA_VISIBLE_DEVICES'] = args.gpu
if args.view:
view_warp(args.load)
else:
config = get_config()
if args.load:
config.session_init = SaverRestore(args.load)
launch_train_with_config(config, SimpleTrainer())
| [
"tensorflow.get_variable",
"tensorflow.concat",
"tensorflow.train.AdamOptimizer",
"tensorflow.pad",
"tensorflow.add_n",
"numpy.matmul",
"numpy.stack",
"tensorflow.name_scope",
"tensorflow.nn.in_top_k",
"tensorflow.matmul",
"tensorflow.nn.sparse_softmax_cross_entropy_with_logits",
"numpy.transpose",
"numpy.array",
"tensorflow.nn.softmax",
"tensorflow.constant",
"tensorflow.transpose",
"tensorflow.reduce_mean",
"tensorflow.reshape",
"tensorflow.expand_dims",
"tensorflow.constant_initializer",
"tensorflow.variable_scope"
] | examples/SpatialTransformer/mnist-addition.py | [(100, 'tensorpack.dataflow.dataset.Mnist', 'dataset.Mnist', (["('train' if isTrain else 'test')"], {}), False, 'from tensorpack.dataflow import dataset\n'), (125, 'numpy.array', 'np.array', (['[[0, 0, 1], [WARP_TARGET_SIZE, 0, 1], [WARP_TARGET_SIZE, WARP_TARGET_SIZE, \n 1], [0, WARP_TARGET_SIZE, 1]]'], {'dtype': '"""float32"""'}), True, 'import numpy as np\n'), (175, 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {}), False, 'import argparse\n'), (30, 'tensorflow.constant', 'tf.constant', (['xys'], {'dtype': 'tf.float32', 'name': '"""xys"""'}), True, 'import tensorflow as tf\n'), (72, 'tensorflow.concat', 'tf.concat', (['[sampled1, sampled2]', '(3)', '"""sampled_concat"""'], {}), True, 'import tensorflow as tf\n'), (77, 'tensorflow.nn.softmax', 'tf.nn.softmax', (['logits'], {'name': '"""prob"""'}), True, 'import tensorflow as tf\n'), (79, 'tensorflow.nn.sparse_softmax_cross_entropy_with_logits', 'tf.nn.sparse_softmax_cross_entropy_with_logits', ([], {'logits': 'logits', 'labels': 'label'}), True, 'import tensorflow as tf\n'), (80, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['cost'], {'name': '"""cross_entropy_loss"""'}), True, 'import tensorflow as tf\n'), (87, 'tensorpack.tfutils.summary.add_moving_summary', 'summary.add_moving_summary', (['cost', 'wd_cost'], {}), False, 'from tensorpack.tfutils import sesscreate, optimizer, summary\n'), (88, 'tensorflow.add_n', 'tf.add_n', (['[wd_cost, cost]'], {'name': '"""cost"""'}), True, 'import tensorflow as tf\n'), (91, 'tensorflow.get_variable', 'tf.get_variable', (['"""learning_rate"""'], {'initializer': '(0.0005)', 'trainable': '(False)'}), True, 'import tensorflow as tf\n'), (92, 'tensorflow.train.AdamOptimizer', 'tf.train.AdamOptimizer', (['lr'], {'epsilon': '(0.001)'}), True, 'import tensorflow as tf\n'), (131, 'numpy.transpose', 'np.transpose', (['affine'], {}), True, 'import numpy as np\n'), (47, 'tensorflow.reshape', 'tf.reshape', (['stn', '[-1, 2, 3]'], {'name': '"""affine"""'}), True, 'import tensorflow as tf\n'), (51, 'tensorflow.transpose', 'tf.transpose', (['coor', '[2, 0, 1, 3]', '"""sampled_coords"""'], {}), True, 'import tensorflow as tf\n'), (62, 'tensorflow.name_scope', 'tf.name_scope', (['"""visualization"""'], {}), True, 'import tensorflow as tf\n'), (63, 'tensorflow.pad', 'tf.pad', (['sampled1', '[[0, 0], [HALF_DIFF, HALF_DIFF], [HALF_DIFF, HALF_DIFF], [0, 0]]'], {}), True, 'import tensorflow as tf\n'), (64, 'tensorflow.pad', 'tf.pad', (['sampled2', '[[0, 0], [HALF_DIFF, HALF_DIFF], [HALF_DIFF, HALF_DIFF], [0, 0]]'], {}), True, 'import tensorflow as tf\n'), (65, 'tensorflow.concat', 'tf.concat', (['[image[:, :, :, (0)], image[:, :, :, (1)]]', '(1)'], {}), True, 'import tensorflow as tf\n'), (66, 'tensorflow.concat', 'tf.concat', (['[padded1[:, :, :, (0)], padded1[:, :, :, (1)]]', '(1)'], {}), True, 'import tensorflow as tf\n'), (67, 'tensorflow.concat', 'tf.concat', (['[padded2[:, :, :, (0)], padded2[:, :, :, (1)]]', '(1)'], {}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.concat', 'tf.concat', (['[img_orig, transform1, transform2]', '(2)', '"""viz"""'], {}), True, 'import tensorflow as tf\n'), (83, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['wrong'], {'name': '"""train_error"""'}), True, 'import tensorflow as tf\n'), (144, 'cv2.cvtColor', 'cv2.cvtColor', (['viz', 'cv2.COLOR_GRAY2BGR'], {}), False, 'import cv2\n'), (48, 'tensorflow.transpose', 'tf.transpose', (['stn', '[2, 0, 1]'], {}), True, 'import tensorflow as tf\n'), (49, 'tensorflow.matmul', 'tf.matmul', (['xys', 'stn'], {}), True, 'import tensorflow as tf\n'), (56, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""STN1"""'], {}), True, 'import tensorflow as tf\n'), (58, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""STN2"""'], {}), True, 'import tensorflow as tf\n'), (70, 'tensorflow.expand_dims', 'tf.expand_dims', (['stacked', '(-1)'], {}), True, 'import tensorflow as tf\n'), (82, 'tensorflow.nn.in_top_k', 'tf.nn.in_top_k', (['logits', 'label', '(1)'], {}), True, 'import tensorflow as tf\n'), (113, 'numpy.stack', 'np.stack', (['[dp[0], dp[2]]'], {'axis': '(2)'}), True, 'import numpy as np\n'), (132, 'numpy.matmul', 'np.matmul', (['xys', 'a'], {}), True, 'import numpy as np\n'), (44, 'tensorflow.constant_initializer', 'tf.constant_initializer', ([], {}), True, 'import tensorflow as tf\n'), (45, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['[1, 0, HALF_DIFF, 0, 1, HALF_DIFF]'], {}), True, 'import tensorflow as tf\n')] |
aikakysymys/transformers | 34e11fab167a7beb78fbe6991ff8721dc9208793 | # coding=utf-8
# Copyright 2019-present, Facebook, Inc and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 Flaubert model.
"""
import random
import tensorflow as tf
from .configuration_flaubert import FlaubertConfig
from .file_utils import add_start_docstrings
from .modeling_tf_outputs import TFBaseModelOutput
from .modeling_tf_utils import keras_serializable, shape_list
from .modeling_tf_xlm import (
TFXLMForMultipleChoice,
TFXLMForQuestionAnsweringSimple,
TFXLMForSequenceClassification,
TFXLMForTokenClassification,
TFXLMMainLayer,
TFXLMModel,
TFXLMPredLayer,
TFXLMWithLMHeadModel,
get_masks,
)
from .tokenization_utils import BatchEncoding
from .utils import logging
logger = logging.get_logger(__name__)
TF_FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
# See all Flaubert models at https://huggingface.co/models?filter=flaubert
]
FLAUBERT_START_DOCSTRING = r"""
This model is a `tf.keras.Model <https://www.tensorflow.org/api_docs/python/tf/keras/Model>`__ sub-class.
Use it as a regular TF 2.0 Keras Model and
refer to the TF 2.0 documentation for all matter related to general usage and behavior.
Parameters:
config (:class:`~transformers.FlaubertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the configuration.
Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model weights.
"""
FLAUBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`transformers.BertTokenizer`.
See :func:`transformers.PreTrainedTokenizer.encode` and
:func:`transformers.PreTrainedTokenizer.__call__` for details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size, sequence_length)`, `optional`, defaults to :obj:`None`):
Mask to avoid performing attention on padding token indices.
Mask values selected in ``[0, 1]``:
``1`` for tokens that are NOT MASKED, ``0`` for MASKED tokens.
`What are attention masks? <../glossary.html#attention-mask>`__
langs (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size, sequence_length)`, `optional`, defaults to :obj:`None`):
A parallel sequence of tokens to be used to indicate the language of each token in the input.
Indices are languages ids which can be obtained from the language names by using two conversion mappings
provided in the configuration of the model (only provided for multilingual models).
More precisely, the `language name -> language id` mapping is in `model.config.lang2id` (dict str -> int) and
the `language id -> language name` mapping is `model.config.id2lang` (dict int -> str).
See usage examples detailed in the `multilingual documentation <https://huggingface.co/transformers/multilingual.html>`__.
token_type_ids (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size, sequence_length)`, `optional`, defaults to :obj:`None`):
Segment token indices to indicate first and second portions of the inputs.
Indices are selected in ``[0, 1]``: ``0`` corresponds to a `sentence A` token, ``1``
corresponds to a `sentence B` token
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size, sequence_length)`, `optional`, defaults to :obj:`None`):
Indices of positions of each input sequence tokens in the position embeddings.
Selected in the range ``[0, config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
lengths (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size,)`, `optional`, defaults to :obj:`None`):
Length of each sentence that can be used to avoid performing attention on padding token indices.
You can also use `attention_mask` for the same result (see above), kept here for compatbility.
Indices selected in ``[0, ..., input_ids.size(-1)]``:
cache (:obj:`Dict[str, tf.Tensor]`, `optional`, defaults to :obj:`None`):
dictionary with ``tf.Tensor`` that contains pre-computed
hidden-states (key and values in the attention blocks) as computed by the model
(see `cache` output below). Can be used to speed up sequential decoding.
The dictionary object will be modified in-place during the forward pass to add newly computed hidden-states.
head_mask (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`, defaults to :obj:`None`):
Mask to nullify selected heads of the self-attention modules.
Mask values selected in ``[0, 1]``:
:obj:`1` indicates the head is **not masked**, :obj:`0` indicates the head is **masked**.
inputs_embeds (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`, defaults to :obj:`None`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`, defaults to :obj:`None`):
If set to ``True``, the attentions tensors of all attention layers are returned. See ``attentions`` under returned tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`, defaults to :obj:`None`):
If set to ``True``, the hidden states of all layers are returned. See ``hidden_states`` under returned tensors for more detail.
return_dict (:obj:`bool`, `optional`, defaults to :obj:`None`):
If set to ``True``, the model will return a :class:`~transformers.file_utils.ModelOutput` instead of a
plain tuple.
"""
@add_start_docstrings(
"The bare Flaubert Model transformer outputting raw hidden-states without any specific head on top.",
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertModel(TFXLMModel):
config_class = FlaubertConfig
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
@keras_serializable
class TFFlaubertMainLayer(TFXLMMainLayer):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.layerdrop = getattr(config, "layerdrop", 0.0)
self.pre_norm = getattr(config, "pre_norm", False)
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.return_dict = config.use_return_dict
def call(
self,
inputs,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
):
# removed: src_enc=None, src_len=None
if isinstance(inputs, (tuple, list)):
input_ids = inputs[0]
attention_mask = inputs[1] if len(inputs) > 1 else attention_mask
langs = inputs[2] if len(inputs) > 2 else langs
token_type_ids = inputs[3] if len(inputs) > 3 else token_type_ids
position_ids = inputs[4] if len(inputs) > 4 else position_ids
lengths = inputs[5] if len(inputs) > 5 else lengths
cache = inputs[6] if len(inputs) > 6 else cache
head_mask = inputs[7] if len(inputs) > 7 else head_mask
inputs_embeds = inputs[8] if len(inputs) > 8 else inputs_embeds
output_attentions = inputs[9] if len(inputs) > 9 else output_attentions
output_hidden_states = inputs[10] if len(inputs) > 10 else output_hidden_states
return_dict = inputs[11] if len(inputs) > 11 else return_dict
assert len(inputs) <= 12, "Too many inputs."
elif isinstance(inputs, (dict, BatchEncoding)):
input_ids = inputs.get("input_ids")
attention_mask = inputs.get("attention_mask", attention_mask)
langs = inputs.get("langs", langs)
token_type_ids = inputs.get("token_type_ids", token_type_ids)
position_ids = inputs.get("position_ids", position_ids)
lengths = inputs.get("lengths", lengths)
cache = inputs.get("cache", cache)
head_mask = inputs.get("head_mask", head_mask)
inputs_embeds = inputs.get("inputs_embeds", inputs_embeds)
output_attentions = inputs.get("output_attentions", output_attentions)
output_hidden_states = inputs.get("output_hidden_states", output_hidden_states)
return_dict = inputs.get("return_dict", return_dict)
assert len(inputs) <= 12, "Too many inputs."
else:
input_ids = inputs
output_attentions = output_attentions if output_attentions is not None else self.output_attentions
output_hidden_states = output_hidden_states if output_hidden_states is not None else self.output_hidden_states
return_dict = return_dict if return_dict is not None else self.return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
bs, slen = shape_list(input_ids)
elif inputs_embeds is not None:
bs, slen = shape_list(inputs_embeds)[:2]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if lengths is None:
if input_ids is not None:
lengths = tf.reduce_sum(tf.cast(tf.not_equal(input_ids, self.pad_index), dtype=tf.int32), axis=1)
else:
lengths = tf.convert_to_tensor([slen] * bs, tf.int32)
# mask = input_ids != self.pad_index
# check inputs
# assert shape_list(lengths)[0] == bs
tf.debugging.assert_equal(
shape_list(lengths)[0], bs
), f"Expected batch size {shape_list(lengths)[0]} and received batch size {bs} mismatched"
# assert lengths.max().item() <= slen
# input_ids = input_ids.transpose(0, 1) # batch size as dimension 0
# assert (src_enc is None) == (src_len is None)
# if src_enc is not None:
# assert self.is_decoder
# assert src_enc.size(0) == bs
# generate masks
mask, attn_mask = get_masks(slen, lengths, self.causal, padding_mask=attention_mask)
# if self.is_decoder and src_enc is not None:
# src_mask = torch.arange(src_len.max(), dtype=torch.long, device=lengths.device) < src_len[:, None]
# position_ids
if position_ids is None:
position_ids = tf.expand_dims(tf.range(slen), axis=0)
else:
# assert shape_list(position_ids) == [bs, slen] # (slen, bs)
tf.debugging.assert_equal(
shape_list(position_ids), [bs, slen]
), f"Position id shape {shape_list(position_ids)} and input shape {[bs, slen]} mismatched"
# position_ids = position_ids.transpose(0, 1)
# langs
if langs is not None:
# assert shape_list(langs) == [bs, slen] # (slen, bs)
tf.debugging.assert_equal(
shape_list(langs), [bs, slen]
), f"Lang shape {shape_list(langs)} and input shape {[bs, slen]} mismatched"
# langs = langs.transpose(0, 1)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x qlen x klen]
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.n_layers
# do not recompute cached elements
if cache is not None and input_ids is not None:
_slen = slen - cache["slen"]
input_ids = input_ids[:, -_slen:]
position_ids = position_ids[:, -_slen:]
if langs is not None:
langs = langs[:, -_slen:]
mask = mask[:, -_slen:]
attn_mask = attn_mask[:, -_slen:]
# embeddings
if inputs_embeds is None:
inputs_embeds = self.embeddings(input_ids)
tensor = inputs_embeds + self.position_embeddings(position_ids)
if langs is not None and self.use_lang_emb:
tensor = tensor + self.lang_embeddings(langs)
if token_type_ids is not None:
tensor = tensor + self.embeddings(token_type_ids)
tensor = self.layer_norm_emb(tensor)
tensor = self.dropout(tensor, training=training)
tensor = tensor * mask[..., tf.newaxis]
# transformer layers
hidden_states = () if output_hidden_states else None
attentions = () if output_attentions else None
for i in range(self.n_layers):
# LayerDrop
dropout_probability = random.uniform(0, 1)
if training and (dropout_probability < self.layerdrop):
continue
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# self attention
if not self.pre_norm:
attn_outputs = self.attentions[i](
tensor, attn_mask, None, cache, head_mask[i], output_attentions, training=training
)
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = self.dropout(attn, training=training)
tensor = tensor + attn
tensor = self.layer_norm1[i](tensor)
else:
tensor_normalized = self.layer_norm1[i](tensor)
attn_outputs = self.attentions[i](
tensor_normalized, attn_mask, None, cache, head_mask[i], output_attentions, training=training
)
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = self.dropout(attn, training=training)
tensor = tensor + attn
# encoder attention (for decoder only)
# if self.is_decoder and src_enc is not None:
# attn = self.encoder_attn[i](tensor, src_mask, kv=src_enc, cache=cache)
# attn = F.dropout(attn, p=self.dropout, training=self.training)
# tensor = tensor + attn
# tensor = self.layer_norm15[i](tensor)
# FFN
if not self.pre_norm:
tensor = tensor + self.ffns[i](tensor)
tensor = self.layer_norm2[i](tensor)
else:
tensor_normalized = self.layer_norm2[i](tensor)
tensor = tensor + self.ffns[i](tensor_normalized)
tensor = tensor * mask[..., tf.newaxis]
# Add last hidden state
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# update cache length
if cache is not None:
cache["slen"] += tensor.size(1)
# move back sequence length to dimension 0
# tensor = tensor.transpose(0, 1)
if not return_dict:
return tuple(v for v in [tensor, hidden_states, attentions] if v is not None)
return TFBaseModelOutput(last_hidden_state=tensor, hidden_states=hidden_states, attentions=attentions)
@add_start_docstrings(
"""The Flaubert Model transformer with a language modeling head on top
(linear layer with weights tied to the input embeddings). """,
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertWithLMHeadModel(TFXLMWithLMHeadModel):
config_class = FlaubertConfig
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
self.pred_layer = TFXLMPredLayer(config, self.transformer.embeddings, name="pred_layer_._proj")
@add_start_docstrings(
"""Flaubert Model with a sequence classification/regression head on top (a linear layer on top of
the pooled output) e.g. for GLUE tasks. """,
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertForSequenceClassification(TFXLMForSequenceClassification):
config_class = FlaubertConfig
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
@add_start_docstrings(
"""Flaubert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear layers on top of
the hidden-states output to compute `span start logits` and `span end logits`). """,
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertForQuestionAnsweringSimple(TFXLMForQuestionAnsweringSimple):
config_class = FlaubertConfig
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
@add_start_docstrings(
"""Flaubert Model with a token classification head on top (a linear layer on top of
the hidden-states output) e.g. for Named-Entity-Recognition (NER) tasks. """,
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertForTokenClassification(TFXLMForTokenClassification):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
@add_start_docstrings(
"""Flaubert Model with a multiple choice classification head on top (a linear layer on top of
the pooled output and a softmax) e.g. for RocStories/SWAG tasks. """,
FLAUBERT_START_DOCSTRING,
)
class TFFlaubertForMultipleChoice(TFXLMForMultipleChoice):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFFlaubertMainLayer(config, name="transformer")
| [
"tensorflow.convert_to_tensor",
"tensorflow.not_equal",
"tensorflow.range"
] | src/transformers/modeling_tf_flaubert.py | [(278, 'random.uniform', 'random.uniform', (['(0)', '(1)'], {}), False, 'import random\n'), (202, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['([slen] * bs)', 'tf.int32'], {}), True, 'import tensorflow as tf\n'), (224, 'tensorflow.range', 'tf.range', (['slen'], {}), True, 'import tensorflow as tf\n'), (200, 'tensorflow.not_equal', 'tf.not_equal', (['input_ids', 'self.pad_index'], {}), True, 'import tensorflow as tf\n')] |
StijnMatsHendriks/adversarial_attack_demo | 956fd8a96c0c8abf1f4a3e0ffb9d83eeda79b8ff | """
This module provide the defence method for SpatialSmoothingDefence's implement.
Feature Squeezing: Detecting Adversarial Examples in Deep Neural Networks
"""
from __future__ import division
from builtins import range
from past.utils import old_div
import logging
logger=logging.getLogger(__name__)
import numpy as np
import tensorflow as tf
#tf的梯度知识：https://blog.csdn.net/wuguangbin1230/article/details/71169863
#FGSM 通过loss函数控制目标攻击或者无目标攻击
def fgsm(x,
loss=None,
eps=0.3,
ord=np.inf,
bounds=(0,1)):
(clip_min, clip_max)=bounds
grad, = tf.gradients(loss, x)
if ord == 1:
red_ind = list(range(1, len(x.get_shape())))
avoid_zero_div = 1e-8
avoid_nan_norm = tf.maximum(avoid_zero_div,
reduce_sum(tf.abs(grad),
reduction_indices=red_ind,
keepdims=True))
normalized_grad = old_div(grad, avoid_nan_norm)
elif ord == 2:
red_ind = list(range(1, len(x.get_shape())))
avoid_zero_div = 1e-8
square = tf.maximum(avoid_zero_div,
reduce_sum(tf.square(grad),
reduction_indices=red_ind,
keepdims=True))
normalized_grad = old_div(grad, tf.sqrt(square))
else:
normalized_grad = tf.sign(grad)
normalized_grad = tf.stop_gradient(normalized_grad)
scaled_grad = eps * normalized_grad
#目标是让loss下降
adv_x = x - scaled_grad
if (clip_min is not None) and (clip_max is not None):
adv_x = tf.clip_by_value(adv_x, clip_min, clip_max)
return adv_x
#DeepFool 仅实现了目标攻击
def deepfool(x,
loss=None,
bounds=(0,1)):
(clip_min, clip_max)=bounds
grad, = tf.gradients(loss, x)
r=old_div(grad*loss,tf.reduce_sum(tf.square(grad)))
#目标是让loss下降
adv_x = x - r
if (clip_min is not None) and (clip_max is not None):
adv_x = tf.clip_by_value(adv_x, clip_min, clip_max)
return adv_x
| [
"tensorflow.clip_by_value",
"tensorflow.sign",
"tensorflow.gradients",
"tensorflow.stop_gradient",
"tensorflow.square",
"tensorflow.sqrt",
"tensorflow.abs"
] | adversarialbox/attacks/tf/tools.py | [(12, 'logging.getLogger', 'logging.getLogger', (['__name__'], {}), False, 'import logging\n'), (28, 'tensorflow.gradients', 'tf.gradients', (['loss', 'x'], {}), True, 'import tensorflow as tf\n'), (67, 'tensorflow.gradients', 'tf.gradients', (['loss', 'x'], {}), True, 'import tensorflow as tf\n'), (37, 'past.utils.old_div', 'old_div', (['grad', 'avoid_nan_norm'], {}), False, 'from past.utils import old_div\n'), (56, 'tensorflow.clip_by_value', 'tf.clip_by_value', (['adv_x', 'clip_min', 'clip_max'], {}), True, 'import tensorflow as tf\n'), (76, 'tensorflow.clip_by_value', 'tf.clip_by_value', (['adv_x', 'clip_min', 'clip_max'], {}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.sign', 'tf.sign', (['grad'], {}), True, 'import tensorflow as tf\n'), (48, 'tensorflow.stop_gradient', 'tf.stop_gradient', (['normalized_grad'], {}), True, 'import tensorflow as tf\n'), (69, 'tensorflow.square', 'tf.square', (['grad'], {}), True, 'import tensorflow as tf\n'), (34, 'tensorflow.abs', 'tf.abs', (['grad'], {}), True, 'import tensorflow as tf\n'), (45, 'tensorflow.sqrt', 'tf.sqrt', (['square'], {}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.square', 'tf.square', (['grad'], {}), True, 'import tensorflow as tf\n')] |
lixusign/euler | c8ce1968367aec2807cc542fcdb5958e3b1b9295 | # Copyright 2018 Alibaba Group Holding Limited. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import tensorflow as tf
from tf_euler.python.euler_ops import base
sample_neighbor = base._LIB_OP.sample_neighbor
get_top_k_neighbor = base._LIB_OP.get_top_k_neighbor
def get_full_neighbor(nodes, edge_types):
"""
Args:
nodes: A `Tensor` of `int64`.
edge_types: A 1-D `Tensor` of int32. Specify edge types to filter outgoing
edges.
Return:
A tuple of `SparseTensor` (neibors, weights).
neighbors: A `SparseTensor` of `int64`.
weights: A `SparseTensor` of `float`.
types: A `SparseTensor` of `int32`
"""
sp_returns = base._LIB_OP.get_full_neighbor(nodes, edge_types)
return tf.SparseTensor(*sp_returns[:3]), tf.SparseTensor(*sp_returns[3:6]), \
tf.SparseTensor(*sp_returns[6:])
def get_sorted_full_neighbor(nodes, edge_types):
"""
Args:
nodes: A `Tensor` of `int64`.
edge_types: A 1-D `Tensor` of int32. Specify edge types to filter outgoing
edges.
Return:
A tuple of `SparseTensor` (neibors, weights).
neighbors: A `SparseTensor` of `int64`.
weights: A `SparseTensor` of `float`.
types: A `SparseTensor` of `int32`
"""
sp_returns = base._LIB_OP.get_sorted_full_neighbor(nodes, edge_types)
return tf.SparseTensor(*sp_returns[:3]), tf.SparseTensor(*sp_returns[3:6]), \
tf.SparseTensor(*sp_returns[6:])
def sample_fanout(nodes, edge_types, counts, default_node=-1):
"""
Sample multi-hop neighbors of nodes according to weight in graph.
Args:
nodes: A 1-D `Tensor` of `int64`.
edge_types: A list of 1-D `Tensor` of int32. Specify edge types to filter
outgoing edges in each hop.
counts: A list of `int`. Specify the number of sampling for each node in
each hop.
default_node: A `int`. Specify the node id to fill when there is no neighbor
for specific nodes.
Return:
A tuple of list: (samples, weights)
samples: A list of `Tensor` of `int64`, with the same length as
`edge_types` and `counts`, with shapes `[num_nodes]`,
`[num_nodes * count1]`, `[num_nodes * count1 * count2]`, ...
weights: A list of `Tensor` of `float`, with shapes
`[num_nodes * count1]`, `[num_nodes * count1 * count2]` ...
types: A list of `Tensor` of `int32`, with shapes
`[num_nodes * count1]`, `[num_nodes * count1 * count2]` ...
"""
neighbors_list = [tf.reshape(nodes, [-1])]
weights_list = []
type_list = []
for hop_edge_types, count in zip(edge_types, counts):
neighbors, weights, types = sample_neighbor(
neighbors_list[-1], hop_edge_types, count, default_node=default_node)
neighbors_list.append(tf.reshape(neighbors, [-1]))
weights_list.append(tf.reshape(weights, [-1]))
type_list.append(tf.reshape(types, [-1]))
return neighbors_list, weights_list, type_list
def get_multi_hop_neighbor(nodes, edge_types):
"""
Get multi-hop neighbors with adjacent matrix.
Args:
nodes: A 1-D `tf.Tensor` of `int64`.
edge_types: A list of 1-D `tf.Tensor` of `int32`. Specify edge types to
filter outgoing edges in each hop.
Return:
A tuple of list: (nodes, adjcents)
nodes: A list of N + 1 `tf.Tensor` of `int64`, N is the number of
hops. Specify node set of each hop, including the root.
adjcents: A list of N `tf.SparseTensor` of `int64`. Specify adjacent
matrix between hops.
"""
nodes = tf.reshape(nodes, [-1])
nodes_list = [nodes]
adj_list = []
for hop_edge_types in edge_types:
neighbor, weight, _ = get_full_neighbor(nodes, hop_edge_types)
next_nodes, next_idx = tf.unique(neighbor.values, out_idx=tf.int64)
next_indices = tf.stack([neighbor.indices[:, 0], next_idx], 1)
next_values = weight.values
next_shape = tf.stack([tf.size(nodes), tf.size(next_nodes)])
next_shape = tf.cast(next_shape, tf.int64)
next_adj = tf.SparseTensor(next_indices, next_values, next_shape)
next_adj = tf.sparse_reorder(next_adj)
nodes_list.append(next_nodes)
adj_list.append(next_adj)
nodes = next_nodes
return nodes_list, adj_list
| [
"tensorflow.unique",
"tensorflow.stack",
"tensorflow.cast",
"tensorflow.reshape",
"tensorflow.SparseTensor",
"tensorflow.sparse_reorder",
"tensorflow.size"
] | tf_euler/python/euler_ops/neighbor_ops.py | [(41, 'tf_euler.python.euler_ops.base._LIB_OP.get_full_neighbor', 'base._LIB_OP.get_full_neighbor', (['nodes', 'edge_types'], {}), False, 'from tf_euler.python.euler_ops import base\n'), (59, 'tf_euler.python.euler_ops.base._LIB_OP.get_sorted_full_neighbor', 'base._LIB_OP.get_sorted_full_neighbor', (['nodes', 'edge_types'], {}), False, 'from tf_euler.python.euler_ops import base\n'), (115, 'tensorflow.reshape', 'tf.reshape', (['nodes', '[-1]'], {}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.SparseTensor', 'tf.SparseTensor', (['*sp_returns[:3]'], {}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.SparseTensor', 'tf.SparseTensor', (['*sp_returns[3:6]'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.SparseTensor', 'tf.SparseTensor', (['*sp_returns[6:]'], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.SparseTensor', 'tf.SparseTensor', (['*sp_returns[:3]'], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.SparseTensor', 'tf.SparseTensor', (['*sp_returns[3:6]'], {}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.SparseTensor', 'tf.SparseTensor', (['*sp_returns[6:]'], {}), True, 'import tensorflow as tf\n'), (87, 'tensorflow.reshape', 'tf.reshape', (['nodes', '[-1]'], {}), True, 'import tensorflow as tf\n'), (120, 'tensorflow.unique', 'tf.unique', (['neighbor.values'], {'out_idx': 'tf.int64'}), True, 'import tensorflow as tf\n'), (121, 'tensorflow.stack', 'tf.stack', (['[neighbor.indices[:, (0)], next_idx]', '(1)'], {}), True, 'import tensorflow as tf\n'), (124, 'tensorflow.cast', 'tf.cast', (['next_shape', 'tf.int64'], {}), True, 'import tensorflow as tf\n'), (125, 'tensorflow.SparseTensor', 'tf.SparseTensor', (['next_indices', 'next_values', 'next_shape'], {}), True, 'import tensorflow as tf\n'), (126, 'tensorflow.sparse_reorder', 'tf.sparse_reorder', (['next_adj'], {}), True, 'import tensorflow as tf\n'), (93, 'tensorflow.reshape', 'tf.reshape', (['neighbors', '[-1]'], {}), True, 'import tensorflow as tf\n'), (94, 'tensorflow.reshape', 'tf.reshape', (['weights', '[-1]'], {}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.reshape', 'tf.reshape', (['types', '[-1]'], {}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.size', 'tf.size', (['nodes'], {}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.size', 'tf.size', (['next_nodes'], {}), True, 'import tensorflow as tf\n')] |
NWPU-903PR/MTDDI | ee4b7f9641aa55681757136f86bae540b046f40b | from __future__ import division
from __future__ import print_function
from operator import itemgetter
from itertools import combinations
import time
import os
import pandas as pd
import random
import copy
import scipy.io as sio
import tensorflow as tf
import numpy as np
import networkx as nx
import scipy.sparse as sp
from sklearn import metrics
from sklearn.metrics import precision_score
from sklearn.metrics import accuracy_score
from sklearn.metrics import recall_score
from sklearn.metrics import f1_score
from sklearn.metrics import precision_recall_curve
from sklearn.metrics import confusion_matrix
from sklearn.metrics import roc_curve, auc
from sklearn.preprocessing import label_binarize
from sklearn.metrics import roc_auc_score
from MTDDI.optimizer import Optimizer
from MTDDI.model import Model
from MTDDI.minibatch import EdgeMinibatchIterator
from MTDDI.utility import rank_metrics, preprocessing
# Train on CPU (hide GPU) due to memory constraints
# os.environ['CUDA_VISIBLE_DEVICES'] = "0"
# Train on GPU
# os.environ["CUDA_DEVICE_ORDER"] = 'PCI_BUS_ID'
os.environ["CUDA_VISIBLE_DEVICES"] = '1'
# config = tf.ConfigProto()
# config.gpu_options.allow_growth = True
np.random.seed(0)
###########################################################
def get_accuracy_scores(edges_pos, edges_neg, edge_type):
feed_dict.update({placeholders['dropout']: 0})
feed_dict.update({placeholders['batch_edge_type_idx']: minibatch.edge_type2idx[edge_type]})
feed_dict.update({placeholders['batch_row_edge_type']: edge_type[0]})
feed_dict.update({placeholders['batch_col_edge_type']: edge_type[1]})
rec = sess.run(opt.predictions, feed_dict=feed_dict)
# def sigmoid(x):
# return 1. / (1 + np.exp(-x))
def sigmoid(x):
if x >= 0:
return 1.0 / (1 + np.exp(-x))
else:
return np.exp(x) / (1 + np.exp(x))
# Predict on test set of edges
preds = []
actual = []
predicted = []
edge_ind = 0
for u, v in edges_pos[edge_type[:2]][edge_type[2]]:
score = sigmoid(rec[u, v])
preds.append(score)
assert adj_mats_orig[edge_type[:2]][edge_type[2]][u,v] == 1, 'Problem 1'
actual.append(edge_ind)
predicted.append((score, edge_ind))
edge_ind += 1
preds_neg = []
for u, v in edges_neg[edge_type[:2]][edge_type[2]]:
score = sigmoid(rec[u, v])
preds_neg.append(score)
assert adj_mats_orig[edge_type[:2]][edge_type[2]][u,v] == 0, 'Problem 0'
predicted.append((score, edge_ind))
edge_ind += 1
preds_all = np.hstack([preds, preds_neg])
preds_all = np.nan_to_num(preds_all)
labels_all = np.hstack([np.ones(len(preds)), np.zeros(len(preds_neg))])
predicted = list(zip(*sorted(predicted, reverse=True, key=itemgetter(0))))[1]
roc_sc = metrics.roc_auc_score(labels_all, preds_all)
# aupr_sc = metrics.average_precision_score(labels_all, preds_all)
precision,recall,pr_thresholds = precision_recall_curve(labels_all,preds_all)
auprc_score = auc(recall,precision)
all_F_measure = np.zeros(len(pr_thresholds))
for k in range(0, len(pr_thresholds)):
if (precision[k] + precision[k]) > 0:
all_F_measure[k] = 2 * precision[k] * recall[k] / (precision[k] + recall[k])
else:
all_F_measure[k] = 0
max_index = all_F_measure.argmax()
threshold = pr_thresholds[max_index]
fpr, tpr, auc_thresholds = roc_curve(labels_all, preds_all)
auc_score = auc(fpr, tpr)
predicted_score = np.zeros(shape=(len(labels_all), 1))
predicted_score[preds_all > threshold] = 1
confusion_matri = confusion_matrix(y_true=labels_all, y_pred=predicted_score)
# print("confusion_matrix:", confusion_matri)
f = f1_score(labels_all, predicted_score)
accuracy = accuracy_score(labels_all,predicted_score)
precision = precision_score(labels_all,predicted_score)
recall = recall_score(labels_all,predicted_score)
apk_sc = rank_metrics.apk(actual, predicted, k=50)
return roc_sc, auprc_score,accuracy,precision,recall,f ,apk_sc
def construct_placeholders(edge_types):
placeholders = {
'batch': tf.placeholder(tf.int32, name='batch'),
'batch_neg': tf.placeholder(tf.int32, name='batch_neg'),
'batch_node':tf.placeholder(tf.int32,name = 'batch_node'),
'adj_min_batch': tf.placeholder(tf.float32,name='adj_min_batch'),
'sim_min_batch': tf.placeholder(tf.float32,name='sim_min_batch'),
'batch_edge_type_idx': tf.placeholder(tf.int32, shape=(), name='batch_edge_type_idx'),
'batch_row_edge_type': tf.placeholder(tf.int32, shape=(), name='batch_row_edge_type'),
'batch_col_edge_type': tf.placeholder(tf.int32, shape=(), name='batch_col_edge_type'),
'degrees': tf.placeholder(tf.int32),
'dropout': tf.placeholder_with_default(0., shape=()),
}
placeholders.update({
'adj_mats_%d,%d,%d' % (i, j, k): tf.sparse_placeholder(tf.float32)
for i, j in edge_types for k in range(edge_types[i,j])})
placeholders.update({
'feat_%d' % i: tf.sparse_placeholder(tf.float32)
for i, _ in edge_types})
return placeholders
###########################################################
test_size = 0.20
val_size = 0.05
num_drugs = 2926
n_drugdrug_rel_types =11
filename = "./data/adj_absor.csv"
adj_absor = pd.read_csv(open(filename) )
filename = "./data/adj_activity_antag.csv"
adj_activity_antag = pd.read_csv(open(filename) )
filename = "./data/adj_activity_syn.csv"
adj_activity_syn = pd.read_csv(open(filename) )
filename = "./data/adj_activity_tox.csv"
adj_activity_tox = pd.read_csv(open(filename) )
filename = "./data/adj_adv.csv"
adj_adv = pd.read_csv(open(filename) )
filename = "./data/adj_excre.csv"
adj_excre = pd.read_csv(open(filename) )
filename = "./data/adj_meta.csv"
adj_meta = pd.read_csv(open(filename) )
filename = "./data/adj_pd_antag.csv"
adj_pd_antag = pd.read_csv(open(filename) )
filename = "./data/adj_pkd.csv"
adj_pkd = pd.read_csv(open(filename) )
filename = "./data/adj_pd_syn.csv"
adj_pd_syn = pd.read_csv(open(filename) )
filename = "./data/adj_serum.csv"
adj_serum = pd.read_csv(open(filename) )
drug_drug_adj_list = []
drug_drug_adj_list.append(sp.csr_matrix(adj_absor))
drug_drug_adj_list.append(sp.csr_matrix(adj_activity_antag))
drug_drug_adj_list.append(sp.csr_matrix(adj_activity_syn))
drug_drug_adj_list.append(sp.csr_matrix(adj_activity_tox))
drug_drug_adj_list.append(sp.csr_matrix(adj_adv))
drug_drug_adj_list.append(sp.csr_matrix(adj_excre))
drug_drug_adj_list.append(sp.csr_matrix(adj_meta))
drug_drug_adj_list.append(sp.csr_matrix(adj_pd_antag))
drug_drug_adj_list.append(sp.csr_matrix(adj_pd_syn))
drug_drug_adj_list.append(sp.csr_matrix(adj_pkd))
drug_drug_adj_list.append(sp.csr_matrix(adj_serum ))
drug_degrees_list = [np.array(drug_adj.sum(axis=0)).squeeze() for drug_adj in drug_drug_adj_list]
# data representation
adj_mats_orig = {
(0, 0): drug_drug_adj_list,
}
degrees = {
0: drug_degrees_list ###?????ADD??
}
n_drugs = adj_absor.shape[0]
drug_feat = sp.identity(n_drugs)
drug_nonzero_feat, drug_num_feat = drug_feat.shape
drug_feat = preprocessing.sparse_to_tuple(drug_feat.tocoo())
###xsimilarity matrix
filename = "drug_similarity.csv"
drug_similarity= pd.read_csv(open(filename) ) ###filename路径中还有中文名字的时候需要加open（）
drug_similarity = drug_similarity.iloc[:,:].values
num_feat = {
0: drug_num_feat,
}
nonzero_feat = {
0: drug_nonzero_feat,
}
feat = {
0: drug_feat,
}
edge_type2dim = {k: [adj.shape for adj in adjs] for k, adjs in adj_mats_orig.items()}
edge_type2decoder = {
(0, 0):'dedicom',
}
edge_types = {k: len(v) for k, v in adj_mats_orig.items()}
num_edge_types = sum(edge_types.values())
print("Edge types:", "%d" % num_edge_types)
###########################################################
#
# Settings and placeholders
#
###########################################################
flags = tf.app.flags
FLAGS = flags.FLAGS
flags.DEFINE_integer('neg_sample_size', 6, 'Negative sample size.')
flags.DEFINE_integer('mutiple_neg_sample', 1, 'mutiple of neg_sample')
flags.DEFINE_float('learning_rate', 0.001, 'Initial learning rate.')
flags.DEFINE_integer('epochs', 20, 'Number of epochs to train.')
flags.DEFINE_integer('hidden1',1024, 'Number of units in hidden layer 1.')
flags.DEFINE_integer('hidden2', 128, 'Number of units in hidden layer 2.')
flags.DEFINE_integer('hidden3', 128, 'Number of units in hidden layer 3.')
flags.DEFINE_integer('hidden4', 128, 'Number of units in hidden layer 4.')
flags.DEFINE_float('weight_decay', 0, 'Weight for L2 loss on embedding matrix.')
flags.DEFINE_float('dropout', 0.0, 'Dropout rate (1 - keep probability).')
flags.DEFINE_float('max_margin', 0.1, 'Max margin parameter in hinge loss')
flags.DEFINE_integer('batch_size', 400, 'minibatch size.')
flags.DEFINE_boolean('bias', True, 'Bias term.')
flags.DEFINE_float('gamma',1,'weight of cross_entroy loss')
flags.DEFINE_float('alpha',0.02,'weight of similarity loss' )
# Important -- Do not evaluate/print validation performance every iteration as it can take
# substantial amount of time
PRINT_PROGRESS_EVERY = 150
print("Defining placeholders")
placeholders = construct_placeholders(edge_types)
###########################################################
#
# Create minibatch iterator, model and optimizer
#
###########################################################
print("Create minibatch iterator")
minibatch = EdgeMinibatchIterator(
adj_mats=adj_mats_orig,
drug_similarity=drug_similarity,
feat=feat,
edge_types=edge_types,
batch_size=FLAGS.batch_size,
test_size=test_size,
val_size=val_size
)
print("Create model")
model = Model(
placeholders=placeholders,
num_feat=num_feat,
nonzero_feat=nonzero_feat,
edge_types=edge_types,
decoders=edge_type2decoder,
)
print("Create optimizer")
with tf.name_scope('optimizer'):
opt = Optimizer(
embeddings=model.embeddings,
latent_inters=model.latent_inters,
latent_varies=model.latent_varies,
degrees=degrees,
edge_types=edge_types,
edge_type2dim=edge_type2dim,
placeholders=placeholders,
batch_size=FLAGS.batch_size,
margin=FLAGS.max_margin
)
print("Initialize session")
sess = tf.Session()
sess.run(tf.global_variables_initializer())
feed_dict = {}
###########################################################
#
# Train model
#
###########################################################
print("Train model")
for epoch in range(FLAGS.epochs):
minibatch.shuffle()
itr = 0
while not minibatch.end():
# Construct feed dictionary
feed_dict = minibatch.next_minibatch_feed_dict(placeholders=placeholders)
feed_dict = minibatch.update_feed_dict(
feed_dict=feed_dict,
dropout=FLAGS.dropout,
placeholders=placeholders)
t = time.time()
# Training step: run single weight update
outs = sess.run([opt.opt_op, opt.cost, opt.batch_edge_type_idx], feed_dict=feed_dict)
train_cost = outs[1]
batch_edge_type = outs[2]
if itr % PRINT_PROGRESS_EVERY == 0:
val_auc, val_auprc,val_accuracy,val_precision,val_recall,val_f,val_apk = get_accuracy_scores(
minibatch.val_edges, minibatch.val_edges_false,
minibatch.idx2edge_type[minibatch.current_edge_type_idx])
print("Epoch:", "%04d" % (epoch + 1), "Iter:", "%04d" % (itr + 1), "Edge:", "%04d" % batch_edge_type,
"train_loss=", "{:.5f}".format(train_cost),
"val_roc=", "{:.5f}".format(val_auc), "val_auprc=", "{:.5f}".format(val_auprc),
"accuracy=", "{:.5f}".format(val_accuracy), "precision=", "{:.5f}".format(val_precision),
"recall=", "{:.5f}".format(val_recall), "f1=", "{:.5f}".format(val_f),
"val_apk=", "{:.5f}".format(val_apk), "time=", "{:.5f}".format(time.time() - t))
itr += 1
print("Optimization finished!")
for et in range(num_edge_types):
roc_score, auprc_score,accuracy,precision,recall,f, apk_score = get_accuracy_scores(
minibatch.test_edges, minibatch.test_edges_false, minibatch.idx2edge_type[et])
print("Edge type=", "[%02d, %02d, %02d]" % minibatch.idx2edge_type[et])
print("Edge type:", "%04d" % et, "Test AUROC score", "{:.5f}".format(roc_score))
print("Edge type:", "%04d" % et, "Test AUPRC score", "{:.5f}".format(auprc_score))
print("Edge type:", "%04d" % et, "Test accuracy score", "{:.5f}".format(accuracy))
print("Edge type:", "%04d" % et, "Test precision score", "{:.5f}".format(precision))
print("Edge type:", "%04d" % et, "Test recall score", "{:.5f}".format(recall))
print("Edge type:", "%04d" % et, "Test f1 score", "{:.5f}".format(f))
print("Edge type:", "%04d" % et, "Test AP@k score", "{:.5f}".format(apk_score))
print()
| [
"sklearn.metrics.roc_auc_score",
"tensorflow.sparse_placeholder",
"numpy.nan_to_num",
"sklearn.metrics.confusion_matrix",
"sklearn.metrics.f1_score",
"numpy.exp",
"numpy.hstack",
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"tensorflow.name_scope",
"tensorflow.Session",
"sklearn.metrics.precision_score",
"tensorflow.placeholder",
"sklearn.metrics.roc_curve",
"scipy.sparse.csr_matrix",
"tensorflow.global_variables_initializer",
"sklearn.metrics.auc",
"sklearn.metrics.recall_score",
"numpy.random.seed",
"scipy.sparse.identity",
"sklearn.metrics.accuracy_score"
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nelsonsaturno/keras-yolo3 | 5fcdd0ef4ec17c952ccbe38612d2f1d97a029937 | from functools import reduce, wraps
import tensorflow as tf
import keras.backend as K
from keras.layers import Input, Lambda
from keras.models import Model
from keras.layers import Conv2D, Add, ZeroPadding2D, UpSampling2D, Concatenate, MaxPooling2D
from keras.layers.advanced_activations import LeakyReLU
from keras.layers.normalization import BatchNormalization
from keras.regularizers import l2
def compose(*funcs):
"""Compose arbitrarily many functions, evaluated left to right.
Reference: https://mathieularose.com/function-composition-in-python/
"""
if funcs:
return reduce(lambda f, g: lambda *a, **kw: g(f(*a, **kw)), funcs)
else:
raise ValueError('Composition of empty sequence not supported.')
def box_iou(b1, b2):
"""Return iou tensor
Parameters
----------
b1: tensor, shape=(i1,...,iN, 4), xywh
b2: tensor, shape=(j, 4), xywh
Returns
-------
iou: tensor, shape=(i1,...,iN, j)
"""
# Expand dim to apply broadcasting.
b1 = K.expand_dims(b1, -2)
b1_xy = b1[..., :2]
b1_wh = b1[..., 2:4]
b1_wh_half = b1_wh / 2.
b1_mins = b1_xy - b1_wh_half
b1_maxes = b1_xy + b1_wh_half
# Expand dim to apply broadcasting.
b2 = K.expand_dims(b2, 0)
b2_xy = b2[..., :2]
b2_wh = b2[..., 2:4]
b2_wh_half = b2_wh / 2.
b2_mins = b2_xy - b2_wh_half
b2_maxes = b2_xy + b2_wh_half
intersect_mins = K.maximum(b1_mins, b2_mins)
intersect_maxes = K.minimum(b1_maxes, b2_maxes)
intersect_wh = K.maximum(intersect_maxes - intersect_mins, 0.)
intersect_area = intersect_wh[..., 0] * intersect_wh[..., 1]
b1_area = b1_wh[..., 0] * b1_wh[..., 1]
b2_area = b2_wh[..., 0] * b2_wh[..., 1]
iou = intersect_area / (b1_area + b2_area - intersect_area)
return iou
def yolo_head(feats, anchors, num_classes, input_shape, calc_loss=False):
"""Convert final layer features to bounding box parameters."""
num_anchors = len(anchors)
# Reshape to batch, height, width, num_anchors, box_params.
anchors_tensor = K.reshape(K.constant(anchors), [1, 1, 1, num_anchors, 2])
grid_shape = K.shape(feats)[1:3] # height, width
grid_y = K.tile(K.reshape(K.arange(0, stop=grid_shape[0]), [-1, 1, 1, 1]),
[1, grid_shape[1], 1, 1])
grid_x = K.tile(K.reshape(K.arange(0, stop=grid_shape[1]), [1, -1, 1, 1]),
[grid_shape[0], 1, 1, 1])
grid = K.concatenate([grid_x, grid_y])
grid = K.cast(grid, K.dtype(feats))
feats = K.reshape(
feats, [-1, grid_shape[0], grid_shape[1], num_anchors, num_classes + 5])
# Adjust preditions to each spatial grid point and anchor size.
box_xy = (K.sigmoid(feats[..., :2]) + grid) / K.cast(grid_shape[::-1], K.dtype(feats))
box_wh = K.exp(feats[..., 2:4]) * anchors_tensor / K.cast(input_shape[::-1], K.dtype(feats))
box_confidence = K.sigmoid(feats[..., 4:5])
box_class_probs = K.sigmoid(feats[..., 5:])
if calc_loss:
return grid, feats, box_xy, box_wh
return box_xy, box_wh, box_confidence, box_class_probs
def yolo_loss(args, anchors, num_classes, ignore_thresh=.5, print_loss=False):
"""Return yolo_loss tensor
Parameters
----------
args:
yolo_outputs: list of tensor, the output of yolo_body or tiny_yolo_body
y_true: list of array, the output of preprocess_true_boxes
anchors: array, shape=(N, 2), wh
num_classes: integer
ignore_thresh: float, the iou threshold whether to ignore object confidence loss
print_loss:
Returns
-------
loss: tensor, shape=(1,)
"""
num_layers = len(anchors) // 3 # default setting
yolo_outputs = args[:num_layers]
y_true = args[num_layers:]
anchor_mask = [[6, 7, 8], [3, 4, 5], [0, 1, 2]] if num_layers == 3 else [[3, 4, 5], [1, 2, 3]]
input_shape = K.cast(K.shape(yolo_outputs[0])[1:3] * 32, K.dtype(y_true[0]))
grid_shapes = [K.cast(K.shape(yolo_outputs[l])[1:3], K.dtype(y_true[0])) for l in range(num_layers)]
loss = 0
m = K.shape(yolo_outputs[0])[0] # batch size, tensor
mf = K.cast(m, K.dtype(yolo_outputs[0]))
for l in range(num_layers):
object_mask = y_true[l][..., 4:5]
true_class_probs = y_true[l][..., 5:]
grid, raw_pred, pred_xy, pred_wh = yolo_head(
yolo_outputs[l], anchors[anchor_mask[l]], num_classes, input_shape, calc_loss=True
)
pred_box = K.concatenate([pred_xy, pred_wh])
# Darknet raw box to calculate loss.
raw_true_xy = y_true[l][..., :2] * grid_shapes[l][::-1] - grid
raw_true_wh = K.log(y_true[l][..., 2:4] / anchors[anchor_mask[l]] * input_shape[::-1])
raw_true_wh = K.switch(object_mask, raw_true_wh, K.zeros_like(raw_true_wh)) # avoid log(0)=-inf
box_loss_scale = 2 - y_true[l][..., 2:3] * y_true[l][..., 3:4]
# Find ignore mask, iterate over each of batch.
ignore_mask = tf.TensorArray(K.dtype(y_true[0]), size=1, dynamic_size=True)
object_mask_bool = K.cast(object_mask, 'bool')
def loop_body(b, ign_mask):
true_box = tf.boolean_mask(y_true[l][b, ..., 0:4], object_mask_bool[b, ..., 0])
iou = box_iou(pred_box[b], true_box)
best_iou = K.max(iou, axis=-1)
ign_mask = ign_mask.write(b, K.cast(best_iou < ignore_thresh, K.dtype(true_box)))
return b + 1, ign_mask
_, ignore_mask = K.control_flow_ops.while_loop(lambda b, *largs: b < m, loop_body, [0, ignore_mask])
ignore_mask = ignore_mask.stack()
ignore_mask = K.expand_dims(ignore_mask, -1)
# K.binary_crossentropy is helpful to avoid exp overflow.
xy_loss = object_mask * box_loss_scale * K.binary_crossentropy(raw_true_xy, raw_pred[..., 0:2],
from_logits=True)
wh_loss = object_mask * box_loss_scale * 0.5 * K.square(raw_true_wh - raw_pred[..., 2:4])
confidence_loss = object_mask * K.binary_crossentropy(object_mask, raw_pred[..., 4:5], from_logits=True) + \
(1 - object_mask) * K.binary_crossentropy(object_mask, raw_pred[..., 4:5], from_logits=True) * ignore_mask
class_loss = object_mask * K.binary_crossentropy(true_class_probs, raw_pred[..., 5:], from_logits=True)
xy_loss = K.sum(xy_loss) / mf
wh_loss = K.sum(wh_loss) / mf
confidence_loss = K.sum(confidence_loss) / mf
class_loss = K.sum(class_loss) / mf
loss += xy_loss + wh_loss + confidence_loss + class_loss
if print_loss:
loss = tf.Print(loss, [loss, xy_loss, wh_loss, confidence_loss, class_loss, K.sum(ignore_mask)],
message='loss: ')
return loss
@wraps(Conv2D)
def DarknetConv2D(*args, **kwargs):
"""Wrapper to set Darknet parameters for Convolution2D."""
darknet_conv_kwargs = {
'kernel_regularizer': l2(5e-4),
'padding': 'valid' if kwargs.get('strides') == (2, 2) else 'same'
}
darknet_conv_kwargs.update(kwargs)
return Conv2D(*args, **darknet_conv_kwargs)
def DarknetConv2D_BN_Leaky(*args, **kwargs):
"""Darknet Convolution2D followed by BatchNormalization and LeakyReLU."""
no_bias_kwargs = {'use_bias': False}
no_bias_kwargs.update(kwargs)
return compose(
DarknetConv2D(*args, **no_bias_kwargs),
BatchNormalization(),
LeakyReLU(alpha=0.1))
def resblock_body(x, num_filters, num_blocks):
"""A series of resblocks starting with a downsampling Convolution2D"""
# Darknet uses left and top padding instead of 'same' mode
x = ZeroPadding2D(((1, 0), (1, 0)))(x)
x = DarknetConv2D_BN_Leaky(num_filters, (3, 3), strides=(2, 2))(x)
for i in range(num_blocks):
y = compose(
DarknetConv2D_BN_Leaky(num_filters // 2, (1, 1)),
DarknetConv2D_BN_Leaky(num_filters, (3, 3)))(x)
x = Add()([x, y])
return x
def darknet_body(x):
"""Darknent body having 52 Convolution2D layers"""
x = DarknetConv2D_BN_Leaky(32, (3, 3))(x)
x = resblock_body(x, 64, 1)
x = resblock_body(x, 128, 2)
x = resblock_body(x, 256, 8)
x = resblock_body(x, 512, 8)
x = resblock_body(x, 1024, 4)
return x
def make_last_layers(x, num_filters, out_filters):
"""6 Conv2D_BN_Leaky layers followed by a Conv2D_linear layer"""
x = compose(
DarknetConv2D_BN_Leaky(num_filters, (1, 1)),
DarknetConv2D_BN_Leaky(num_filters * 2, (3, 3)),
DarknetConv2D_BN_Leaky(num_filters, (1, 1)),
DarknetConv2D_BN_Leaky(num_filters * 2, (3, 3)),
DarknetConv2D_BN_Leaky(num_filters, (1, 1)))(x)
y = compose(
DarknetConv2D_BN_Leaky(num_filters * 2, (3, 3)),
DarknetConv2D(out_filters, (1, 1)))(x)
return x, y
def yolo_body(inputs, num_anchors, num_classes):
"""Create YOLO_V3 model CNN body in Keras."""
darknet = Model(inputs, darknet_body(inputs))
x, y1 = make_last_layers(darknet.output, 512, num_anchors * (num_classes + 5))
x = compose(
DarknetConv2D_BN_Leaky(256, (1, 1)),
UpSampling2D(2))(x)
x = Concatenate()([x, darknet.layers[152].output])
x, y2 = make_last_layers(x, 256, num_anchors * (num_classes + 5))
x = compose(
DarknetConv2D_BN_Leaky(128, (1, 1)),
UpSampling2D(2))(x)
x = Concatenate()([x, darknet.layers[92].output])
x, y3 = make_last_layers(x, 128, num_anchors * (num_classes + 5))
return Model(inputs, [y1, y2, y3])
def tiny_yolo_body(inputs, num_anchors, num_classes):
"""Create Tiny YOLO_v3 model CNN body in keras."""
x1 = compose(
DarknetConv2D_BN_Leaky(16, (3, 3)),
MaxPooling2D(pool_size=(2, 2), strides=(2, 2), padding='same'),
DarknetConv2D_BN_Leaky(32, (3, 3)),
MaxPooling2D(pool_size=(2, 2), strides=(2, 2), padding='same'),
DarknetConv2D_BN_Leaky(64, (3, 3)),
MaxPooling2D(pool_size=(2, 2), strides=(2, 2), padding='same'),
DarknetConv2D_BN_Leaky(128, (3, 3)),
MaxPooling2D(pool_size=(2, 2), strides=(2, 2), padding='same'),
DarknetConv2D_BN_Leaky(256, (3, 3)))(inputs)
x2 = compose(
MaxPooling2D(pool_size=(2, 2), strides=(2, 2), padding='same'),
DarknetConv2D_BN_Leaky(512, (3, 3)),
MaxPooling2D(pool_size=(2, 2), strides=(1, 1), padding='same'),
DarknetConv2D_BN_Leaky(1024, (3, 3)),
DarknetConv2D_BN_Leaky(256, (1, 1)))(x1)
y1 = compose(
DarknetConv2D_BN_Leaky(512, (3, 3)),
DarknetConv2D(num_anchors * (num_classes + 5), (1, 1)))(x2)
x2 = compose(
DarknetConv2D_BN_Leaky(128, (1, 1)),
UpSampling2D(2))(x2)
y2 = compose(
Concatenate(),
DarknetConv2D_BN_Leaky(256, (3, 3)),
DarknetConv2D(num_anchors * (num_classes + 5), (1, 1)))([x2, x1])
return Model(inputs, [y1, y2])
def create_tiny_model(
input_shape, anchors, num_classes, load_pretrained=False, freeze_body=2,
weights_path='model_data/tiny_yolo_weights.h5'):
"""create the training model, for Tiny YOLOv3"""
K.clear_session() # get a new session
image_input = Input(shape=(None, None, 3))
h, w = input_shape
num_anchors = len(anchors)
y_true = [
Input(shape=(h // {0: 32, 1: 16}[l], w // {0: 32, 1: 16}[l], num_anchors // 2, num_classes + 5)) for l in
range(2)
]
model_body = tiny_yolo_body(image_input, num_anchors // 2, num_classes)
print('Create Tiny YOLOv3 model with {} anchors and {} classes.'.format(num_anchors, num_classes))
if load_pretrained:
model_body.load_weights(weights_path, by_name=True, skip_mismatch=True)
print('Load weights {}.'.format(weights_path))
if freeze_body in [1, 2]:
# Freeze the darknet body or freeze all but 2 output layers.
num = (20, len(model_body.layers) - 2)[freeze_body - 1]
for i in range(num):
model_body.layers[i].trainable = False
print('Freeze the first {} layers of total {} layers.'.format(num, len(model_body.layers)))
model_loss = Lambda(
yolo_loss, output_shape=(1,), name='yolo_loss',
arguments={'anchors': anchors, 'num_classes': num_classes, 'ignore_thresh': 0.7})(
[*model_body.output, *y_true])
model = Model([model_body.input, *y_true], model_loss)
return model
| [
"tensorflow.boolean_mask"
] | tiny_model.py | [(170, 'functools.wraps', 'wraps', (['Conv2D'], {}), False, 'from functools import reduce, wraps\n'), (39, 'keras.backend.expand_dims', 'K.expand_dims', (['b1', '(-2)'], {}), True, 'import keras.backend as K\n'), (47, 'keras.backend.expand_dims', 'K.expand_dims', (['b2', '(0)'], {}), True, 'import keras.backend as K\n'), (54, 'keras.backend.maximum', 'K.maximum', (['b1_mins', 'b2_mins'], {}), True, 'import keras.backend as K\n'), (55, 'keras.backend.minimum', 'K.minimum', (['b1_maxes', 'b2_maxes'], {}), True, 'import keras.backend as K\n'), (56, 'keras.backend.maximum', 'K.maximum', (['(intersect_maxes - intersect_mins)', '(0.0)'], {}), True, 'import keras.backend as K\n'), (76, 'keras.backend.concatenate', 'K.concatenate', (['[grid_x, grid_y]'], {}), True, 'import keras.backend as K\n'), (79, 'keras.backend.reshape', 'K.reshape', (['feats', '[-1, grid_shape[0], grid_shape[1], num_anchors, num_classes + 5]'], {}), True, 'import keras.backend as K\n'), (85, 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bluemonk482/tdlstm | 29032c3d116866e3d30b29fdf1a0af605c054d93 | import sys
sys.path.insert(0, r'../')
import data.util
import tensorflow as tf
import numpy as np
class LSTMClassifier:
def __init__(self, args, embedding_init):
self.learning_rate = args.learning_rate
self.num_hidden = args.num_hidden
self.num_classes = args.num_classes
self.dropout_output = args.dropout_output
self.dropout_input = args.dropout_input
self.clip_norm = args.clip_norm
self.embedding_init = embedding_init
self.x = tf.placeholder(tf.int32, [None, None], 'input')
self.y = tf.placeholder(tf.int32, [None, self.num_classes], 'labels')
self.seq_len = tf.placeholder(tf.int64, [None], 'input_length')
def inference(self, forward_only=None):
embed_inputs = tf.nn.embedding_lookup(self.embedding_init, self.x) ## (batch_size, seq_len, 100)
with tf.variable_scope('hidden', reuse=forward_only):
with tf.variable_scope('lstm_cell'):
lstm_cell = tf.nn.rnn_cell.LSTMCell(num_units=self.num_hidden, use_peepholes=False,
# forget_bias=0.0,
activation=tf.nn.relu,
# initializer=tf.truncated_normal_initializer(stddev=0.1),
# initializer=tf.random_uniform_initializer(-0.003, 0.003),
initializer=tf.contrib.layers.xavier_initializer(),
state_is_tuple=True)
if not forward_only:
lstm_cell = tf.nn.rnn_cell.DropoutWrapper(cell=lstm_cell, output_keep_prob=self.dropout_output)
# lstm_cell = tf.nn.rnn_cell.MultiRNNCell(cells=[lstm_cell] * 4, state_is_tuple=True)
if not forward_only:
embed_inputs = tf.nn.dropout(embed_inputs, keep_prob=self.dropout_input)
rnn_outputs, output_states = tf.nn.dynamic_rnn(
cell=lstm_cell,
inputs=embed_inputs,
dtype=tf.float32,
sequence_length=self.seq_len,
) ## (batch_size, seq_len, num_hidden)
# rnn_outputs = tf.transpose(rnn_outputs, perm=[1,0,2]) ## (seq_len, batch_size, num_hidden) NOT NEEDED ANY MORE
last_outputs = self.last_relevant(rnn_outputs, self.seq_len) ## (batch_size, num_hidden)
with tf.variable_scope('output', reuse=forward_only):
with tf.variable_scope('softmax'):
W = tf.get_variable('W', [self.num_hidden, self.num_classes],
# initializer=tf.random_uniform_initializer(-0.003, 0.003))
initializer=tf.contrib.layers.xavier_initializer())
# initializer=tf.truncated_normal_initializer(stddev=0.1))
b = tf.get_variable('b', [self.num_classes], initializer=tf.constant_initializer(0.1))
logits = tf.matmul(last_outputs, W) + b
self.embed_inputs = embed_inputs
return logits
def loss(self, logits, forward_only=None):
cost = tf.nn.softmax_cross_entropy_with_logits(logits=logits, labels=tf.cast(self.y, tf.float32))
mean_cost = tf.reduce_mean(cost)
y_pred = tf.argmax(logits, 1)
correct_pred = tf.equal(y_pred, tf.argmax(self.y, 1))
accuracy = tf.reduce_mean(tf.cast(correct_pred, tf.float32))
if forward_only:
str_summary_type = 'eval'
loss_summ = tf.summary.scalar("{0}_loss".format(str_summary_type), mean_cost)
acc_summ = tf.summary.scalar("{0}_accuracy".format(str_summary_type), accuracy)
merged = tf.summary.merge([loss_summ, acc_summ])
return mean_cost, accuracy, y_pred, merged
else:
return mean_cost, accuracy, y_pred
def training(self, cost):
optimizer = tf.train.AdamOptimizer(learning_rate=self.learning_rate)
# train_op = optimizer.minimize(cost)
trainables = tf.trainable_variables()
grads = tf.gradients(cost, trainables)
grads, _ = tf.clip_by_global_norm(grads, clip_norm=self.clip_norm)
capped_gvs = zip(grads, trainables)
train_op = optimizer.apply_gradients(capped_gvs)
return train_op
@staticmethod
def seq_length(data):
used = tf.sign(tf.reduce_max(tf.abs(data), axis=2))
length = tf.reduce_sum(used, axis=1)
length = tf.cast(length, tf.int64)
return length
@staticmethod
def last_relevant(outputs, length):
# Borrowed from: https://gist.github.com/rockt/f4f9df5674f3da6a32786bcf9fbb6a88
batch_size, max_length, hidden_size = tf.unstack(tf.shape(outputs))
index = tf.range(0, batch_size) * max_length + (tf.cast(length, tf.int32) - 1)
flat = tf.reshape(outputs, [-1, hidden_size])
relevant = tf.gather(flat, index)
return relevant
| [
"tensorflow.nn.dynamic_rnn",
"tensorflow.reduce_sum",
"tensorflow.cast",
"tensorflow.train.AdamOptimizer",
"tensorflow.gradients",
"tensorflow.gather",
"tensorflow.contrib.layers.xavier_initializer",
"tensorflow.trainable_variables",
"tensorflow.argmax",
"tensorflow.nn.dropout",
"tensorflow.matmul",
"tensorflow.shape",
"tensorflow.placeholder",
"tensorflow.summary.merge",
"tensorflow.nn.embedding_lookup",
"tensorflow.nn.rnn_cell.DropoutWrapper",
"tensorflow.range",
"tensorflow.reduce_mean",
"tensorflow.reshape",
"tensorflow.constant_initializer",
"tensorflow.clip_by_global_norm",
"tensorflow.variable_scope",
"tensorflow.abs"
] | models/lstm_classifier.py | [(2, 'sys.path.insert', 'sys.path.insert', (['(0)', '"""../"""'], {}), False, 'import sys\n'), (19, 'tensorflow.placeholder', 'tf.placeholder', (['tf.int32', '[None, None]', '"""input"""'], {}), True, 'import tensorflow as tf\n'), (20, 'tensorflow.placeholder', 'tf.placeholder', (['tf.int32', '[None, self.num_classes]', '"""labels"""'], {}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.placeholder', 'tf.placeholder', (['tf.int64', '[None]', '"""input_length"""'], {}), True, 'import tensorflow as tf\n'), (26, 'tensorflow.nn.embedding_lookup', 'tf.nn.embedding_lookup', (['self.embedding_init', 'self.x'], {}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['cost'], {}), True, 'import tensorflow as tf\n'), (69, 'tensorflow.argmax', 'tf.argmax', (['logits', '(1)'], {}), True, 'import tensorflow as tf\n'), (84, 'tensorflow.train.AdamOptimizer', 'tf.train.AdamOptimizer', ([], {'learning_rate': 'self.learning_rate'}), True, 'import tensorflow as tf\n'), (87, 'tensorflow.trainable_variables', 'tf.trainable_variables', ([], {}), True, 'import tensorflow as tf\n'), (88, 'tensorflow.gradients', 'tf.gradients', (['cost', 'trainables'], {}), True, 'import tensorflow as tf\n'), (89, 'tensorflow.clip_by_global_norm', 'tf.clip_by_global_norm', (['grads'], {'clip_norm': 'self.clip_norm'}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['used'], {'axis': '(1)'}), True, 'import tensorflow as tf\n'), (99, 'tensorflow.cast', 'tf.cast', (['length', 'tf.int64'], {}), True, 'import tensorflow as tf\n'), (107, 'tensorflow.reshape', 'tf.reshape', (['outputs', '[-1, hidden_size]'], {}), True, 'import tensorflow as tf\n'), (108, 'tensorflow.gather', 'tf.gather', (['flat', 'index'], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""hidden"""'], {'reuse': 'forward_only'}), True, 'import tensorflow as tf\n'), (44, 'tensorflow.nn.dynamic_rnn', 'tf.nn.dynamic_rnn', ([], {'cell': 'lstm_cell', 'inputs': 'embed_inputs', 'dtype': 'tf.float32', 'sequence_length': 'self.seq_len'}), True, 'import tensorflow as tf\n'), (54, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""output"""'], {'reuse': 'forward_only'}), True, 'import tensorflow as tf\n'), (70, 'tensorflow.argmax', 'tf.argmax', (['self.y', '(1)'], {}), True, 'import tensorflow as tf\n'), (71, 'tensorflow.cast', 'tf.cast', (['correct_pred', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (77, 'tensorflow.summary.merge', 'tf.summary.merge', (['[loss_summ, acc_summ]'], {}), True, 'import tensorflow as tf\n'), (105, 'tensorflow.shape', 'tf.shape', (['outputs'], {}), True, 'import tensorflow as tf\n'), (29, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""lstm_cell"""'], {}), True, 'import tensorflow as tf\n'), (42, 'tensorflow.nn.dropout', 'tf.nn.dropout', (['embed_inputs'], {'keep_prob': 'self.dropout_input'}), True, 'import tensorflow as tf\n'), (55, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""softmax"""'], {}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.matmul', 'tf.matmul', (['last_outputs', 'W'], {}), True, 'import tensorflow as tf\n'), (67, 'tensorflow.cast', 'tf.cast', (['self.y', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (97, 'tensorflow.abs', 'tf.abs', (['data'], {}), True, 'import tensorflow as tf\n'), (106, 'tensorflow.range', 'tf.range', (['(0)', 'batch_size'], {}), True, 'import tensorflow as tf\n'), (106, 'tensorflow.cast', 'tf.cast', (['length', 'tf.int32'], {}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.nn.rnn_cell.DropoutWrapper', 'tf.nn.rnn_cell.DropoutWrapper', ([], {'cell': 'lstm_cell', 'output_keep_prob': 'self.dropout_output'}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.contrib.layers.xavier_initializer', 'tf.contrib.layers.xavier_initializer', ([], {}), True, 'import tensorflow as tf\n'), (58, 'tensorflow.contrib.layers.xavier_initializer', 'tf.contrib.layers.xavier_initializer', ([], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(0.1)'], {}), True, 'import tensorflow as tf\n')] |
hzhwcmhf/contk_docs | d4874cce5347bcf9f33d9fe99756c7145f181b88 | import os
import json
import numpy as np
import tensorflow as tf
from cotk.dataloader import MultiTurnDialog
from cotk.wordvector import WordVector, Glove
from utils import debug, try_cache
from model import HredModel
def create_model(sess, data, args, embed):
with tf.variable_scope(args.name):
model = HredModel(data, args, embed)
model.print_parameters()
latest_dir = '%s/checkpoint_latest' % args.model_dir
best_dir = '%s/checkpoint_best' % args.model_dir
if tf.train.get_checkpoint_state(latest_dir) and args.restore == "last":
print("Reading model parameters from %s" % latest_dir)
model.latest_saver.restore(sess, tf.train.latest_checkpoint(latest_dir))
else:
if tf.train.get_checkpoint_state(best_dir) and args.restore == "best":
print('Reading model parameters from %s' % best_dir)
model.best_saver.restore(sess, tf.train.latest_checkpoint(best_dir))
else:
print("Created model with fresh parameters.")
global_variable = [gv for gv in tf.global_variables() if args.name in gv.name]
sess.run(tf.variables_initializer(global_variable))
return model
def main(args):
if args.debug:
debug()
if args.cuda:
config = tf.ConfigProto()
config.gpu_options.allow_growth = True
else:
config = tf.ConfigProto(device_count={'GPU': 0})
os.environ["CUDA_VISIBLE_DEVICES"] = "-1"
data_class = MultiTurnDialog.load_class(args.dataset)
wordvec_class = WordVector.load_class(args.wvclass)
if wordvec_class == None:
wordvec_class = Glove
if args.cache:
data = try_cache(data_class, (args.datapath,), args.cache_dir)
vocab = data.frequent_vocab_list
embed = try_cache(lambda wv, ez, vl: wordvec_class(wv).load_matrix(ez, vl),
(args.wvpath, args.embedding_size, vocab),
args.cache_dir, wordvec_class.__name__)
else:
data = data_class(args.datapath,
min_frequent_vocab_times=args.min_frequent_vocab_times,
max_sent_length=args.max_sent_length,
max_turn_length=args.max_turn_length)
wv = wordvec_class(args.wvpath)
vocab = data.frequent_vocab_list
embed = wv.load_matrix(args.embedding_size, vocab)
embed = np.array(embed, dtype = np.float32)
with tf.Session(config=config) as sess:
model = create_model(sess, data, args, embed)
if args.mode == "train":
model.train_process(sess, data, args)
else:
test_res = model.test_process(sess, data, args)
for key, val in test_res.items():
if isinstance(val, bytes):
test_res[key] = str(val)
json.dump(test_res, open("./result.json", "w")) | [
"tensorflow.train.get_checkpoint_state",
"tensorflow.train.latest_checkpoint",
"tensorflow.global_variables",
"tensorflow.variables_initializer",
"tensorflow.ConfigProto",
"tensorflow.Session",
"tensorflow.variable_scope",
"numpy.array"
] | hred-tensorflow-master/main.py | [(44, 'cotk.dataloader.MultiTurnDialog.load_class', 'MultiTurnDialog.load_class', (['args.dataset'], {}), False, 'from cotk.dataloader import MultiTurnDialog\n'), (45, 'cotk.wordvector.WordVector.load_class', 'WordVector.load_class', (['args.wvclass'], {}), False, 'from cotk.wordvector import WordVector, Glove\n'), (63, 'numpy.array', 'np.array', (['embed'], {'dtype': 'np.float32'}), True, 'import numpy as np\n'), (13, 'tensorflow.variable_scope', 'tf.variable_scope', (['args.name'], {}), True, 'import tensorflow as tf\n'), (14, 'model.HredModel', 'HredModel', (['data', 'args', 'embed'], {}), False, 'from model import HredModel\n'), (35, 'utils.debug', 'debug', ([], {}), False, 'from utils import debug, try_cache\n'), (38, 'tensorflow.ConfigProto', 'tf.ConfigProto', ([], {}), True, 'import tensorflow as tf\n'), (41, 'tensorflow.ConfigProto', 'tf.ConfigProto', ([], {'device_count': "{'GPU': 0}"}), True, 'import tensorflow as tf\n'), (49, 'utils.try_cache', 'try_cache', (['data_class', '(args.datapath,)', 'args.cache_dir'], {}), False, 'from utils import debug, try_cache\n'), (65, 'tensorflow.Session', 'tf.Session', ([], {'config': 'config'}), True, 'import tensorflow as tf\n'), (18, 'tensorflow.train.get_checkpoint_state', 'tf.train.get_checkpoint_state', (['latest_dir'], {}), True, 'import tensorflow as tf\n'), (20, 'tensorflow.train.latest_checkpoint', 'tf.train.latest_checkpoint', (['latest_dir'], {}), True, 'import tensorflow as tf\n'), (22, 'tensorflow.train.get_checkpoint_state', 'tf.train.get_checkpoint_state', (['best_dir'], {}), True, 'import tensorflow as tf\n'), (24, 'tensorflow.train.latest_checkpoint', 'tf.train.latest_checkpoint', (['best_dir'], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.variables_initializer', 'tf.variables_initializer', (['global_variable'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.global_variables', 'tf.global_variables', ([], {}), True, 'import tensorflow as tf\n')] |
samuelfneumann/RLControl | 71430b1de2e4262483908932eb44579c2ec8216d | import tensorflow as tf
class BaseNetwork(object):
def __init__(self, sess, config, learning_rate):
"""
base network for actor and critic network.
Args:
sess: tf.Session()
config: Configuration object
learning_rate: learning rate for training (Could be an array if two-headed network)
"""
self.sess = sess
# Env config
self.state_dim = config.state_dim
self.state_min = config.state_min
self.state_max = config.state_max
self.action_dim = config.action_dim
self.action_min = config.action_min
self.action_max = config.action_max
self.learning_rate = learning_rate
self.tau = config.tau
self.norm_type = config.norm_type
def set_session(self, session):
self.session = session
def build_network(self, *args):
"""
build network.
"""
raise NotImplementedError("build network first!")
def train(self, *args):
raise NotImplementedError("train network!")
def predict(self, *args):
raise NotImplementedError("predict output for network!")
def predict_target(self, *args):
raise NotImplementedError("predict output for target network!")
def update_target_network(self):
raise NotImplementedError("update target network!")
def get_num_trainable_vars(self):
raise NotImplementedError("update target network!")
def apply_norm(self, net, activation_fn, phase, layer_num):
if self.norm_type == 'layer':
norm_net = tf.contrib.layers.layer_norm(net, center=True, scale=True, activation_fn=activation_fn)
elif self.norm_type == 'batch':
norm_net = tf.contrib.layers.batch_norm(net, fused=True, center=True, scale=True, activation_fn=activation_fn,
is_training=phase, scope='batchnorm_'+str(layer_num))
elif self.norm_type == 'none' or self.norm_type == 'input_norm':
norm_net = activation_fn(net)
else:
raise ValueError('unknown norm type')
return norm_net
| [
"tensorflow.contrib.layers.layer_norm"
] | agents/network/base_network.py | [(56, 'tensorflow.contrib.layers.layer_norm', 'tf.contrib.layers.layer_norm', (['net'], {'center': '(True)', 'scale': '(True)', 'activation_fn': 'activation_fn'}), True, 'import tensorflow as tf\n')] |
Veluga/agents | c9c690841cd188a2d2d10a4e586a990c075e887d | # coding=utf-8
# Copyright 2020 The TF-Agents Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""End-to-end test for bandit training under stationary linear environments."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import functools
import os
from absl import app
from absl import flags
import tensorflow as tf # pylint: disable=g-explicit-tensorflow-version-import
from tf_agents.bandits.agents import exp3_mixture_agent
from tf_agents.bandits.agents import lin_ucb_agent
from tf_agents.bandits.agents import linear_thompson_sampling_agent as lin_ts_agent
from tf_agents.bandits.agents import neural_epsilon_greedy_agent
from tf_agents.bandits.agents.examples.v2 import trainer
from tf_agents.bandits.environments import environment_utilities
from tf_agents.bandits.environments import stationary_stochastic_py_environment as sspe
from tf_agents.bandits.metrics import tf_metrics as tf_bandit_metrics
from tf_agents.environments import tf_py_environment
from tf_agents.networks import q_network
from tf_agents.policies import utils as policy_utilities
flags.DEFINE_string('root_dir', os.getenv('TEST_UNDECLARED_OUTPUTS_DIR'),
'Root directory for writing logs/summaries/checkpoints.')
flags.DEFINE_enum(
'agent', 'LinUCB', ['LinUCB', 'LinTS', 'epsGreedy', 'Mix'],
'Which agent to use. Possible values are `LinUCB` and `LinTS`, `epsGreedy`,'
' and `Mix`.'
)
flags.DEFINE_bool('normalize_reward_fns', False, 'Whether to normalize the '
'reward functions so that rewards are close to being in '
'[0, 1].')
FLAGS = flags.FLAGS
BATCH_SIZE = 8
CONTEXT_DIM = 15
NUM_ACTIONS = 5
REWARD_NOISE_VARIANCE = 0.01
TRAINING_LOOPS = 2000
STEPS_PER_LOOP = 2
AGENT_ALPHA = 0.1
EPSILON = 0.05
LAYERS = (50, 50, 50)
LR = 0.001
def main(unused_argv):
tf.compat.v1.enable_v2_behavior() # The trainer only runs with V2 enabled.
with tf.device('/CPU:0'): # due to b/128333994
if FLAGS.normalize_reward_fns:
action_reward_fns = (
environment_utilities.normalized_sliding_linear_reward_fn_generator(
CONTEXT_DIM, NUM_ACTIONS, REWARD_NOISE_VARIANCE))
else:
action_reward_fns = (
environment_utilities.sliding_linear_reward_fn_generator(
CONTEXT_DIM, NUM_ACTIONS, REWARD_NOISE_VARIANCE))
env = sspe.StationaryStochasticPyEnvironment(
functools.partial(
environment_utilities.context_sampling_fn,
batch_size=BATCH_SIZE,
context_dim=CONTEXT_DIM),
action_reward_fns,
batch_size=BATCH_SIZE)
environment = tf_py_environment.TFPyEnvironment(env)
optimal_reward_fn = functools.partial(
environment_utilities.tf_compute_optimal_reward,
per_action_reward_fns=action_reward_fns)
optimal_action_fn = functools.partial(
environment_utilities.tf_compute_optimal_action,
per_action_reward_fns=action_reward_fns)
network = q_network.QNetwork(
input_tensor_spec=environment.time_step_spec().observation,
action_spec=environment.action_spec(),
fc_layer_params=LAYERS)
if FLAGS.agent == 'LinUCB':
agent = lin_ucb_agent.LinearUCBAgent(
time_step_spec=environment.time_step_spec(),
action_spec=environment.action_spec(),
alpha=AGENT_ALPHA,
dtype=tf.float32)
elif FLAGS.agent == 'LinTS':
agent = lin_ts_agent.LinearThompsonSamplingAgent(
time_step_spec=environment.time_step_spec(),
action_spec=environment.action_spec(),
alpha=AGENT_ALPHA,
dtype=tf.float32)
elif FLAGS.agent == 'epsGreedy':
agent = neural_epsilon_greedy_agent.NeuralEpsilonGreedyAgent(
time_step_spec=environment.time_step_spec(),
action_spec=environment.action_spec(),
reward_network=network,
optimizer=tf.compat.v1.train.AdamOptimizer(learning_rate=LR),
epsilon=EPSILON)
elif FLAGS.agent == 'Mix':
emit_policy_info = policy_utilities.InfoFields.PREDICTED_REWARDS_MEAN
agent_linucb = lin_ucb_agent.LinearUCBAgent(
time_step_spec=environment.time_step_spec(),
action_spec=environment.action_spec(),
emit_policy_info=emit_policy_info,
alpha=AGENT_ALPHA,
dtype=tf.float32)
agent_lints = lin_ts_agent.LinearThompsonSamplingAgent(
time_step_spec=environment.time_step_spec(),
action_spec=environment.action_spec(),
emit_policy_info=emit_policy_info,
alpha=AGENT_ALPHA,
dtype=tf.float32)
agent_epsgreedy = neural_epsilon_greedy_agent.NeuralEpsilonGreedyAgent(
time_step_spec=environment.time_step_spec(),
action_spec=environment.action_spec(),
reward_network=network,
optimizer=tf.compat.v1.train.AdamOptimizer(learning_rate=LR),
emit_policy_info=emit_policy_info,
epsilon=EPSILON)
agent = exp3_mixture_agent.Exp3MixtureAgent(
(agent_linucb, agent_lints, agent_epsgreedy))
regret_metric = tf_bandit_metrics.RegretMetric(optimal_reward_fn)
suboptimal_arms_metric = tf_bandit_metrics.SuboptimalArmsMetric(
optimal_action_fn)
trainer.train(
root_dir=FLAGS.root_dir,
agent=agent,
environment=environment,
training_loops=TRAINING_LOOPS,
steps_per_loop=STEPS_PER_LOOP,
additional_metrics=[regret_metric, suboptimal_arms_metric])
if __name__ == '__main__':
app.run(main)
| [
"tensorflow.compat.v1.enable_v2_behavior",
"tensorflow.compat.v1.train.AdamOptimizer",
"tensorflow.device"
] | tf_agents/bandits/agents/examples/v2/train_eval_stationary_linear.py | [(42, 'absl.flags.DEFINE_enum', 'flags.DEFINE_enum', (['"""agent"""', '"""LinUCB"""', "['LinUCB', 'LinTS', 'epsGreedy', 'Mix']", '"""Which agent to use. Possible values are `LinUCB` and `LinTS`, `epsGreedy`, and `Mix`."""'], {}), False, 'from absl import flags\n'), (47, 'absl.flags.DEFINE_bool', 'flags.DEFINE_bool', (['"""normalize_reward_fns"""', '(False)', '"""Whether to normalize the reward functions so that rewards are close to being in [0, 1]."""'], {}), False, 'from absl import flags\n'), (40, 'os.getenv', 'os.getenv', (['"""TEST_UNDECLARED_OUTPUTS_DIR"""'], {}), False, 'import os\n'), (67, 'tensorflow.compat.v1.enable_v2_behavior', 'tf.compat.v1.enable_v2_behavior', ([], {}), True, 'import tensorflow as tf\n'), (158, 'absl.app.run', 'app.run', (['main'], {}), False, 'from absl import app\n'), (69, 'tensorflow.device', 'tf.device', (['"""/CPU:0"""'], {}), True, 'import tensorflow as tf\n'), (86, 'tf_agents.environments.tf_py_environment.TFPyEnvironment', 'tf_py_environment.TFPyEnvironment', (['env'], {}), False, 'from tf_agents.environments import tf_py_environment\n'), (88, 'functools.partial', 'functools.partial', (['environment_utilities.tf_compute_optimal_reward'], {'per_action_reward_fns': 'action_reward_fns'}), False, 'import functools\n'), (92, 'functools.partial', 'functools.partial', (['environment_utilities.tf_compute_optimal_action'], {'per_action_reward_fns': 'action_reward_fns'}), False, 'import functools\n'), (144, 'tf_agents.bandits.metrics.tf_metrics.RegretMetric', 'tf_bandit_metrics.RegretMetric', (['optimal_reward_fn'], {}), True, 'from tf_agents.bandits.metrics import tf_metrics as tf_bandit_metrics\n'), (145, 'tf_agents.bandits.metrics.tf_metrics.SuboptimalArmsMetric', 'tf_bandit_metrics.SuboptimalArmsMetric', (['optimal_action_fn'], {}), True, 'from tf_agents.bandits.metrics import tf_metrics as tf_bandit_metrics\n'), (148, 'tf_agents.bandits.agents.examples.v2.trainer.train', 'trainer.train', ([], {'root_dir': 'FLAGS.root_dir', 'agent': 'agent', 'environment': 'environment', 'training_loops': 'TRAINING_LOOPS', 'steps_per_loop': 'STEPS_PER_LOOP', 'additional_metrics': '[regret_metric, suboptimal_arms_metric]'}), False, 'from tf_agents.bandits.agents.examples.v2 import trainer\n'), (72, 'tf_agents.bandits.environments.environment_utilities.normalized_sliding_linear_reward_fn_generator', 'environment_utilities.normalized_sliding_linear_reward_fn_generator', (['CONTEXT_DIM', 'NUM_ACTIONS', 'REWARD_NOISE_VARIANCE'], {}), False, 'from tf_agents.bandits.environments import environment_utilities\n'), (76, 'tf_agents.bandits.environments.environment_utilities.sliding_linear_reward_fn_generator', 'environment_utilities.sliding_linear_reward_fn_generator', (['CONTEXT_DIM', 'NUM_ACTIONS', 'REWARD_NOISE_VARIANCE'], {}), False, 'from tf_agents.bandits.environments import environment_utilities\n'), (80, 'functools.partial', 'functools.partial', (['environment_utilities.context_sampling_fn'], {'batch_size': 'BATCH_SIZE', 'context_dim': 'CONTEXT_DIM'}), False, 'import functools\n'), (141, 'tf_agents.bandits.agents.exp3_mixture_agent.Exp3MixtureAgent', 'exp3_mixture_agent.Exp3MixtureAgent', (['(agent_linucb, agent_lints, agent_epsgreedy)'], {}), False, 'from tf_agents.bandits.agents import exp3_mixture_agent\n'), (118, 'tensorflow.compat.v1.train.AdamOptimizer', 'tf.compat.v1.train.AdamOptimizer', ([], {'learning_rate': 'LR'}), True, 'import tensorflow as tf\n'), (138, 'tensorflow.compat.v1.train.AdamOptimizer', 'tf.compat.v1.train.AdamOptimizer', ([], {'learning_rate': 'LR'}), True, 'import tensorflow as tf\n')] |
OmidPoursaeed/Self_supervised_Learning_Point_Clouds | 4f684cc761347f329eb967823f80522a8a3aedc0 | '''
Created on May 22, 2018
Author: Achlioptas Panos (Github ID: optas)
'''
import numpy as np
import time
import tensorflow as tf
import importlib
import os
import os.path as osp
from tflearn import *
from . gan import GAN
from functools import partial
# sys.path.append(BASE_DIR)
# from train_rotation_prediction import eval_one_epoch
import provider
import train_rotation_prediction
from . general_utils import plot_3d_point_cloud
class W_GAN_GP_ROT(GAN):
'''Gradient Penalty.
https://arxiv.org/abs/1704.00028
'''
def __init__(self, name, discriminator, generator, gen_kwargs={}, disc_kwargs={}, gan_kwargs = {}, graph=None, **kwargs):
GAN.__init__(self, name, graph)
self.step_count = 0
self.n_output = gan_kwargs.get('n_out') #(1024, 3)
self.flags = gan_kwargs.get('flags')
self.batch_size = gan_kwargs.get('batch_size_value', 32)
batch = tf.Variable(0)
self.noise_dim = gan_kwargs.get('noise_dim')
self.init_lr = gan_kwargs.get('init_lr')
lam = gan_kwargs.get('lam')
self.num_angles = self.flags.num_angles
self.num_points = self.flags.num_point
lr_pred = self.flags.lr_pred
self.weight_rotation_loss_d = self.flags.weight_rotation_loss_d
self.weight_rotation_loss_g = self.flags.weight_rotation_loss_g
beta = self.flags.beta
self.img_save_dir = osp.join(self.flags.top_out_dir, 'rotated_pc/', name)
if not osp.exists(self.img_save_dir):
os.makedirs(self.img_save_dir)
self.visualize = False
self.ms_task = self.flags.ms_task
self.discriminator = discriminator
self.generator = generator
self.model_pred = importlib.import_module(self.flags.model) # import network module
self.use_trans_loss = self.flags.use_transformation_loss
self.use_input_trans = self.flags.use_input_transform
self.use_feature_trans = self.flags.use_feature_transform
self.is_training_pl = tf.placeholder(tf.bool, shape=(), name='is_training_pl')
self.bn_decay = train_rotation_prediction.get_bn_decay(batch)
self.get_pred = partial(self.model_pred.get_model,
is_training=self.is_training_pl,
bn_decay=self.bn_decay,
num_angles=self.num_angles,
use_input_trans=self.use_input_trans,
use_feature_trans=self.use_feature_trans)
self.get_loss = partial(self.model_pred.get_loss, use_trans_loss=self.use_trans_loss)
with tf.variable_scope(name):
self.noise = tf.placeholder(tf.float32, shape=[self.batch_size, self.noise_dim], name='noise') # Noise vector.
self.real_pc = tf.placeholder(tf.float32, shape=[self.batch_size] + self.n_output, name='real_pc') # Ground-truth.
with tf.variable_scope('rotation'):
self.rot_label_pl = tf.placeholder(tf.int32, shape=self.batch_size, name='rot_label_pl')
self.real_pc_rotated = self.rotate_n_angles(self.real_pc, self.rot_label_pl)
self.real_pc_pred, real_pc_end_points = self.get_pred(self.real_pc_rotated)
self.real_pc_rot_loss = self.get_loss(self.real_pc_pred, self.rot_label_pl, real_pc_end_points)
with tf.variable_scope('generator'):
self.generator_out = self.generator(self.noise, self.n_output, **gen_kwargs)
self.gen_out_rotated = self.rotate_n_angles(self.generator_out, self.rot_label_pl)
self.gen_out_pred, gen_out_end_points = self.get_pred(self.gen_out_rotated)
self.gen_out_rot_loss = self.get_loss(self.gen_out_pred, self.rot_label_pl, gen_out_end_points) #classification loss
#need to fix
if self.ms_task:
with tf.variable_scope('mixed'):
#add fake pc as a rotation class
num_to_add = int(max(self.batch_size/self.num_angles, 1))
idx = tf.range(0, self.batch_size, 1)
idx = tf.random_shuffle(idx)[0:num_to_add]
self.fake_to_add = tf.gather(self.generator_out, idx)
self.mixed_pc = tf.concat([self.real_pc_rotated, self.fake_to_add], 0)
self.mixed_label = tf.concat([self.rot_label_pl, tf.constant(self.num_angles, shape = (num_to_add,))], axis = 0)
mixed_idx = tf.range(0, self.mixed_label.get_shape().as_list()[0], 1)
mixed_idx = tf.random_shuffle(mixed_idx)[0:self.batch_size]
self.mixed_pc = tf.gather(self.mixed_pc, mixed_idx)
self.mixed_label = tf.gather(self.mixed_label, mixed_idx)
self.mixed_pred, mixed_end_points = self.get_pred(self.mixed_pc)
self.mixed_loss = self.get_loss(self.mixed_pred, self.mixed_label, mixed_end_points)
with tf.variable_scope('discriminator') as scope:
self.real_prob, self.real_logit = self.discriminator(self.real_pc_rotated, scope=scope, **disc_kwargs)
self.synthetic_prob, self.synthetic_logit = self.discriminator(self.gen_out_rotated, reuse=True, scope=scope, **disc_kwargs)
# Compute WGAN losses
self.loss_d = tf.reduce_mean(self.synthetic_logit) - tf.reduce_mean(self.real_logit) # comparing rotated fake and real images
self.loss_g = -tf.reduce_mean(self.synthetic_logit)
# Add rotation loss
if self.ms_task:
self.g_ms_loss = tf.abs(self.gen_out_rot_loss - self.real_pc_rot_loss, name = 'abs')
self.d_ms_loss = self.mixed_loss
self.loss_d_rot = self.loss_d + self.weight_rotation_loss_d * self.d_ms_loss
self.loss_g_rot = self.loss_g + self.weight_rotation_loss_g * self.g_ms_loss
else:
self.loss_d_rot = self.loss_d + self.weight_rotation_loss_d * self.real_pc_rot_loss
self.loss_g_rot = self.loss_g + self.weight_rotation_loss_g * self.gen_out_rot_loss
# Compute gradient penalty at interpolated points
ndims = self.real_pc.get_shape().ndims #(1024, 3)
alpha = tf.random_uniform(shape=[self.batch_size] + [1] * (ndims - 1), minval=0., maxval=1.)
differences = self.generator_out - self.real_pc
interpolates = self.real_pc + (alpha * differences)
with tf.variable_scope('discriminator') as scope:
gradients = tf.gradients(self.discriminator(interpolates, reuse=True, scope=scope, **disc_kwargs)[1], [interpolates])[0]
# Reduce over all but the first dimension
slopes = tf.sqrt(tf.reduce_sum(tf.square(gradients), reduction_indices=list(range(1, ndims))))
gradient_penalty = tf.reduce_mean((slopes - 1.) ** 2)
self.loss_d_rot += lam * gradient_penalty
train_vars = tf.trainable_variables()
d_params = [v for v in train_vars if v.name.startswith(name + '/discriminator/')]
g_params = [v for v in train_vars if v.name.startswith(name + '/generator/')]
rot_params = [v for v in train_vars if '/rotation/' in v.name] #slightly suspecting that this part is incorrect
self.opt_d = self.optimizer(self.init_lr, beta, self.loss_d_rot, d_params)
self.opt_g = self.optimizer(self.init_lr, beta, self.loss_g_rot, g_params) #used loss_g + rot_loss to update
self.opt_pred = self.optimizer(lr_pred, beta, self.real_pc_rot_loss, rot_params, batch) #only use real pics to update
self.saver = tf.train.Saver(tf.global_variables(), max_to_keep=None)
self.init = tf.global_variables_initializer()
#Launch the session
config = tf.ConfigProto(allow_soft_placement = True)
config.gpu_options.allow_growth = True
self.sess = tf.Session(config=config, graph=self.graph)
self.sess.run(self.init)
def generator_noise_distribution(self, n_samples, ndims, mu, sigma):
return np.random.normal(mu, sigma, (n_samples, ndims))
def _single_epoch_train(self, train_data, epoch, batch_size, noise_params, discriminator_boost=5, num_angles=8, rotation_boost=5, writer=None):
'''
see: http://blog.aylien.com/introduction-generative-adversarial-networks-code-tensorflow/
http://wiseodd.github.io/techblog/2016/09/17/gan-tensorflow/
'''
n_examples = train_data.num_examples
epoch_loss_d_rot = 0.
epoch_loss_g_rot = 0.
epoch_loss_d = 0.
epoch_loss_g = 0.
epoch_rot_loss = 0.
epoch_real_rot_loss = 0.
epoch_fake_rot_loss = 0.
n_batches = n_examples // batch_size
start_time = time.time()
iterations_for_epoch = n_batches // discriminator_boost
is_training(True, session=self.sess)
try:
# Loop over all batches
for _ in range(iterations_for_epoch):
#use real_pc to train rotation prediction model for a few iters
for i in range(rotation_boost):
feed, _, _ = train_data.next_batch(batch_size)
rotation_label = np.random.randint(0, self.num_angles, size=self.batch_size)
feed_dict = {self.real_pc: feed,
self.is_training_pl: True,
self.rot_label_pl: rotation_label
}
_, rot_loss, real_pc_pred, real_pc_rotated = self.sess.run([self.opt_pred, self.real_pc_rot_loss, self.real_pc_pred, self.real_pc_rotated], feed_dict=feed_dict)
real_rot_acc = self.get_accuracy(real_pc_pred, rotation_label)
epoch_rot_loss += rot_loss
if self.visualize:
for j in range(self.batch_size):
title = f'epoch_{epoch}_real_pc \nlr: {self.init_lr} \n num_angles: {self.num_angles} \nrot_loss_weights_dg: {self.weight_rotation_loss_d}, {self.weight_rotation_loss_g}'
plot_kwargs = {'epoch': epoch,
'in_u_sphere': True,
'ith': j,
'title': title,
'save_dir': self.img_save_dir,
'file_name': f'epoch{epoch}_rot{rotation_label[j]}_batch{j}.png'
}
plot_3d_point_cloud(real_pc_rotated, plot_kwargs)
plot_kwargs_up = {'epoch': epoch,
'in_u_sphere': True,
'ith': j,
'title': title,
'save_dir': self.img_save_dir,
'file_name': f'epoch{epoch}_rot{rotation_label[j]}_batch{j}_up.png'
}
plot_3d_point_cloud(feed, plot_kwargs_up)
for _ in range(discriminator_boost):
feed, _, _ = train_data.next_batch(batch_size)
z = self.generator_noise_distribution(batch_size, self.noise_dim, **noise_params)
feed_dict = {self.real_pc: feed,
self.noise: z,
self.is_training_pl: True,
self.rot_label_pl: rotation_label
}
_, _, loss_d, real_pc_rot_loss, loss_d_rot, real_pc_rotated = self.sess.run([self.opt_d, self.opt_pred, self.loss_d, self.real_pc_rot_loss, self.loss_d_rot, self.real_pc_rotated], feed_dict=feed_dict)
epoch_real_rot_loss += real_pc_rot_loss
epoch_loss_d += loss_d
epoch_loss_d_rot += loss_d_rot # sum of two losses above
# Update generator.
z = self.generator_noise_distribution(batch_size, self.noise_dim, **noise_params)
feed_dict = {self.real_pc: feed,
self.noise: z,
self.is_training_pl: True,
self.rot_label_pl: rotation_label
}
_, loss_g, gen_out_rot_loss, gen_out_pred, loss_g_rot, generator_out, gen_out_rotated = \
self.sess.run([self.opt_g, self.loss_g, self.gen_out_rot_loss, self.gen_out_pred, self.loss_g_rot, self.generator_out, self.gen_out_rotated], feed_dict=feed_dict)
fake_rot_acc = self.get_accuracy(gen_out_pred, rotation_label)
epoch_fake_rot_loss += gen_out_rot_loss
epoch_loss_g += loss_g
epoch_loss_g_rot += loss_g_rot # sum of two losses above
if writer:
names = ['loss_d', 'real_pc_rot_loss', 'loss_d_rot', 'loss_g', 'gen_out_rot_loss', 'loss_g_rot']
values = [loss_d, real_pc_rot_loss, loss_d_rot, loss_g, gen_out_rot_loss, loss_g_rot]
self._add_summaries(writer, names, values)
self.step_count += 1
is_training(False, session=self.sess)
except Exception:
raise
finally:
is_training(False, session=self.sess)
epoch_rot_loss /= (iterations_for_epoch * rotation_boost)
epoch_real_rot_loss /= (iterations_for_epoch * discriminator_boost)
epoch_loss_d /= (iterations_for_epoch * discriminator_boost)
epoch_loss_d_rot /= (iterations_for_epoch * discriminator_boost)
epoch_fake_rot_loss /= iterations_for_epoch
epoch_loss_g /= iterations_for_epoch
epoch_loss_g_rot /= iterations_for_epoch
duration = time.time() - start_time
dict = {'rot_loss': epoch_rot_loss, \
'd_losses': [epoch_real_rot_loss, epoch_loss_d, epoch_loss_d_rot], \
'g_losses': [epoch_fake_rot_loss, epoch_loss_g, epoch_loss_g_rot], \
'acc': [real_rot_acc, fake_rot_acc]}
extra = False
if extra:
print(f'EPOCH: {epoch}, loss_d: {epoch_loss_d}, real_rot_loss: {epoch_real_rot_loss}, loss_d_rot: {epoch_loss_d_rot}; \nloss_g: {epoch_loss_g}, fake_rot_loss: {epoch_fake_rot_loss}, loss_g_rot: {epoch_loss_g_rot}')
else:
print(f'EPOCH: {epoch}, real_rot_loss: {round(epoch_real_rot_loss, 3)}, fake_rot_loss: {round(epoch_fake_rot_loss, 3)}, loss_d_rot: {round(epoch_loss_d, 3)}, loss_g_rot: {round(epoch_loss_g, 3)}, real_rot_acc: {round(real_rot_acc, 3)}, fake_rot_acc: {round(fake_rot_acc, 3)}')
return dict, duration
def _add_summaries(self, writer, names, values):
for name, value in zip(names, values):
summary = tf.Summary(value=[
tf.Summary.Value(tag=name, simple_value=value),
])
writer.add_summary(summary, self.step_count)
def eval_rot(self, batch_data):
feed_dict = {self.real_pc: batch_data, self.is_training_pl: False}
_, rot_loss = self.sess.run([self.opt_pred, self.real_pc_rot_loss], feed_dict=feed_dict)
return rot_loss
def get_accuracy(self, pred, labels):
pred_val = np.argmax(pred, 1)
correct = np.sum(pred_val == labels)
return correct/len(labels)
def rotate_n_angles(self, current_data, current_label):
'''batch_data: Bx1024x3 tensor'''
# current_label = np.random.randint(0, self.num_angles, size=self.batch_size)
if self.num_angles == 6:
current_data = provider.rotate_tensor_by_label(current_data, current_label, self.graph)
elif self.num_angles == 18:
current_data = provider.rotate_tensor_by_label(current_data, current_label, self.graph)
elif self.num_angles == 32:
current_data = provider.rotate_tensor_by_label_32(current_data, current_label, self.graph)
elif self.num_angles == 54:
current_data = provider.rotate_tensor_by_label_54(current_data, current_label, self.graph)
elif self.num_angles: #sunflower distribution
current_data = provider.rotate_point_by_label_n(current_data, current_label, self.graph, self.num_angles, use_tensor=True)
else:
raise(NotImplementedError())
current_data = tf.convert_to_tensor(current_data)
return current_data
| [
"tensorflow.convert_to_tensor",
"tensorflow.concat",
"tensorflow.global_variables",
"tensorflow.random_shuffle",
"numpy.random.randint",
"tensorflow.Variable",
"tensorflow.ConfigProto",
"tensorflow.gather",
"numpy.argmax",
"tensorflow.Session",
"tensorflow.square",
"tensorflow.trainable_variables",
"tensorflow.placeholder",
"tensorflow.global_variables_initializer",
"numpy.sum",
"tensorflow.constant",
"tensorflow.range",
"tensorflow.reduce_mean",
"numpy.random.normal",
"tensorflow.Summary.Value",
"tensorflow.variable_scope",
"tensorflow.random_uniform",
"tensorflow.abs"
] | latent_3d_points_py3/src/w_gan_gp_rot.py | [(39, 'tensorflow.Variable', 'tf.Variable', (['(0)'], {}), True, 'import tensorflow as tf\n'), (50, 'os.path.join', 'osp.join', (['self.flags.top_out_dir', '"""rotated_pc/"""', 'name'], {}), True, 'import os.path as osp\n'), (58, 'importlib.import_module', 'importlib.import_module', (['self.flags.model'], {}), False, 'import importlib\n'), (64, 'tensorflow.placeholder', 'tf.placeholder', (['tf.bool'], {'shape': '()', 'name': '"""is_training_pl"""'}), True, 'import tensorflow as tf\n'), (66, 'train_rotation_prediction.get_bn_decay', 'train_rotation_prediction.get_bn_decay', (['batch'], {}), False, 'import train_rotation_prediction\n'), (68, 'functools.partial', 'partial', (['self.model_pred.get_model'], {'is_training': 'self.is_training_pl', 'bn_decay': 'self.bn_decay', 'num_angles': 'self.num_angles', 'use_input_trans': 'self.use_input_trans', 'use_feature_trans': 'self.use_feature_trans'}), False, 'from functools import partial\n'), (74, 'functools.partial', 'partial', (['self.model_pred.get_loss'], {'use_trans_loss': 'self.use_trans_loss'}), False, 'from functools import partial\n'), (160, 'numpy.random.normal', 'np.random.normal', (['mu', 'sigma', '(n_samples, ndims)'], {}), True, 'import numpy as np\n'), (177, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (292, 'numpy.argmax', 'np.argmax', (['pred', '(1)'], {}), True, 'import numpy as np\n'), (293, 'numpy.sum', 'np.sum', (['(pred_val == labels)'], {}), True, 'import numpy as np\n'), (311, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['current_data'], {}), True, 'import tensorflow as tf\n'), (51, 'os.path.exists', 'osp.exists', (['self.img_save_dir'], {}), True, 'import os.path as osp\n'), (52, 'os.makedirs', 'os.makedirs', (['self.img_save_dir'], {}), False, 'import os\n'), (76, 'tensorflow.variable_scope', 'tf.variable_scope', (['name'], {}), True, 'import tensorflow as tf\n'), (77, 'tensorflow.placeholder', 'tf.placeholder', (['tf.float32'], {'shape': '[self.batch_size, self.noise_dim]', 'name': '"""noise"""'}), True, 'import tensorflow as tf\n'), (78, 'tensorflow.placeholder', 'tf.placeholder', (['tf.float32'], {'shape': '([self.batch_size] + self.n_output)', 'name': '"""real_pc"""'}), True, 'import tensorflow as tf\n'), (129, 'tensorflow.random_uniform', 'tf.random_uniform', ([], {'shape': '([self.batch_size] + [1] * (ndims - 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Mckiev/homework | f2e05dce1571d3398c148376f1f31a28ef8f2c2f | import uuid
import os, inspect
import time
import pickle
import sys
import gym.spaces
import itertools
import numpy as np
import random
import tensorflow as tf
import tensorflow.contrib.layers as layers
from collections import namedtuple
from dqn_utils import *
import logz
OptimizerSpec = namedtuple("OptimizerSpec", ["constructor", "kwargs", "lr_schedule"])
def setup_logger(logdir, locals_):
# Configure output directory for logging
logz.configure_output_dir(logdir)
# Log experimental parameters
args = inspect.getargspec(QLearner)[0]
params = {k: str(locals_[k]) if k in locals_ else None for k in args}
params['exp_name'] = locals_['q_func'].__name__ + locals_['double_q'] * '_doubleQ'
logz.save_params(params)
def get_num_params():
total_parameters = 0
for variable in tf.trainable_variables():
shape = variable.get_shape()
variable_parameters = 1
for dim in shape:
variable_parameters *= dim.value
print('%d parameters in %s' %(variable_parameters ,variable.name))
total_parameters += variable_parameters
print('Total : %d' %total_parameters)
sys.exit()
class QLearner(object):
def __init__(
self,
env,
q_func,
optimizer_spec,
session,
exploration=LinearSchedule(1000000, 0.1),
stopping_criterion=None,
replay_buffer_size=1000000,
batch_size=32,
gamma=0.99,
learning_starts=50000,
learning_freq=4,
frame_history_len=4,
target_update_freq=10000,
grad_norm_clipping=10,
rew_file=None,
logdir = 'res',
double_q=True,
lander=False):
"""Run Deep Q-learning algorithm.
You can specify your own convnet using q_func.
All schedules are w.r.t. total number of steps taken in the environment.
Parameters
----------
env: gym.Env
gym environment to train on.
q_func: function
Model to use for computing the q function. It should accept the
following named arguments:
img_in: tf.Tensor
tensorflow tensor representing the input image
num_actions: int
number of actions
scope: str
scope in which all the model related variables
should be created
reuse: bool
whether previously created variables should be reused.
optimizer_spec: OptimizerSpec
Specifying the constructor and kwargs, as well as learning rate schedule
for the optimizer
session: tf.Session
tensorflow session to use.
exploration: rl_algs.deepq.utils.schedules.Schedule
schedule for probability of chosing random action.
stopping_criterion: (env, t) -> bool
should return true when it's ok for the RL algorithm to stop.
takes in env and the number of steps executed so far.
replay_buffer_size: int
How many memories to store in the replay buffer.
batch_size: int
How many transitions to sample each time experience is replayed.
gamma: float
Discount Factor
learning_starts: int
After how many environment steps to start replaying experiences
learning_freq: int
How many steps of environment to take between every experience replay
frame_history_len: int
How many past frames to include as input to the model.
target_update_freq: int
How many experience replay rounds (not steps!) to perform between
each update to the target Q network
grad_norm_clipping: float or None
If not None gradients' norms are clipped to this value.
double_q: bool
If True, then use double Q-learning to compute target values. Otherwise, use vanilla DQN.
https://papers.nips.cc/paper/3964-double-q-learning.pdf
"""
assert type(env.observation_space) == gym.spaces.Box
assert type(env.action_space) == gym.spaces.Discrete
self.target_update_freq = target_update_freq
self.optimizer_spec = optimizer_spec
self.batch_size = batch_size
self.learning_freq = learning_freq
self.learning_starts = learning_starts
self.stopping_criterion = stopping_criterion
self.env = env
self.session = session
self.exploration = exploration
self.rew_file = os.path.join(logdir,'data_dump.pkl') if rew_file is None else rew_file
setup_logger(logdir, locals())
###############
# BUILD MODEL #
###############
if len(self.env.observation_space.shape) == 1:
# This means we are running on low-dimensional observations (e.g. RAM)
input_shape = self.env.observation_space.shape
else:
img_h, img_w, img_c = self.env.observation_space.shape
input_shape = (img_h, img_w, frame_history_len * img_c)
self.num_actions = self.env.action_space.n
# set up placeholders
# placeholder for current observation (or state)
self.obs_t_ph = tf.placeholder(
tf.float32 if lander else tf.uint8, [None] + list(input_shape))
# placeholder for current action
self.act_t_ph = tf.placeholder(tf.int32, [None])
# placeholder for current reward
self.rew_t_ph = tf.placeholder(tf.float32, [None])
# placeholder for next observation (or state)
self.obs_tp1_ph = tf.placeholder(
tf.float32 if lander else tf.uint8, [None] + list(input_shape))
# placeholder for end of episode mask
# this value is 1 if the next state corresponds to the end of an episode,
# in which case there is no Q-value at the next state; at the end of an
# episode, only the current state reward contributes to the target, not the
# next state Q-value (i.e. target is just rew_t_ph, not rew_t_ph + gamma * q_tp1)
self.done_mask_ph = tf.placeholder(tf.float32, [None])
# casting to float on GPU ensures lower data transfer times.
if lander:
obs_t_float = self.obs_t_ph
obs_tp1_float = self.obs_tp1_ph
else:
obs_t_float = tf.cast(self.obs_t_ph, tf.float32) / 255.0
obs_tp1_float = tf.cast(self.obs_tp1_ph, tf.float32) / 255.0
# Here, you should fill in your own code to compute the Bellman error. This requires
# evaluating the current and next Q-values and constructing the corresponding error.
# TensorFlow will differentiate this error for you, you just need to pass it to the
# optimizer. See assignment text for details.
# Your code should produce one scalar-valued tensor: total_error
# This will be passed to the optimizer in the provided code below.
# Your code should also produce two collections of variables:
# q_func_vars
# target_q_func_vars
# These should hold all of the variables of the Q-function network and target network,
# respectively. A convenient way to get these is to make use of TF's "scope" feature.
# For example, you can create your Q-function network with the scope "q_func" like this:
# <something> = q_func(obs_t_float, num_actions, scope="q_func", reuse=False)
# And then you can obtain the variables like this:
# q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope='q_func')
# Older versions of TensorFlow may require using "VARIABLES" instead of "GLOBAL_VARIABLES"
# Tip: use huber_loss (from dqn_utils) instead of squared error when defining self.total_error
self.Q_vals = q_func(obs_t_float, self.num_actions, 'q_func', reuse = tf.AUTO_REUSE)
q_func_ph = tf.gather_nd(self.Q_vals, tf.stack([tf.range(tf.shape(self.Q_vals)[0]), self.act_t_ph], axis=1))
target_q_ph = q_func(obs_tp1_float, self.num_actions, 'target_q_func', reuse = tf.AUTO_REUSE)
if double_q:
target_index = tf.math.argmax(q_func(obs_tp1_float, self.num_actions, 'q_func', reuse = tf.AUTO_REUSE), axis = 1, output_type = tf.int32)
target_v_ph = tf.gather_nd(target_q_ph, tf.stack([tf.range(tf.shape(target_q_ph)[0]), target_index], axis=1))
else:
target_v_ph = tf.math.reduce_max(target_q_ph, axis = 1)
backup_ph = self.rew_t_ph + (1 - self.done_mask_ph) * (gamma * target_v_ph)
self.total_error = tf.math.reduce_mean(huber_loss(q_func_ph - backup_ph))
q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope='q_func')
target_q_func_vars = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope='target_q_func')
# construct optimization op (with gradient clipping)
self.learning_rate = tf.placeholder(tf.float32, (), name="learning_rate")
optimizer = self.optimizer_spec.constructor(learning_rate=self.learning_rate, **self.optimizer_spec.kwargs)
self.train_fn = minimize_and_clip(optimizer, self.total_error,
var_list=q_func_vars, clip_val=grad_norm_clipping)
# update_target_fn will be called periodically to copy Q network to target Q network
update_target_fn = []
for var, var_target in zip(sorted(q_func_vars, key=lambda v: v.name),
sorted(target_q_func_vars, key=lambda v: v.name)):
update_target_fn.append(var_target.assign(var))
self.update_target_fn = tf.group(*update_target_fn)
# construct the replay buffer
self.replay_buffer = ReplayBuffer(replay_buffer_size, frame_history_len, lander=lander)
self.replay_buffer_idx = None
###############
# RUN ENV #
###############
self.model_initialized = False
self.num_param_updates = 0
self.mean_episode_reward = -float('nan')
self.best_mean_episode_reward = -float('inf')
self.last_obs = self.env.reset()
self.log_every_n_steps = 10000
self.start_time = time.time()
self.t = 0
def stopping_criterion_met(self):
return self.stopping_criterion is not None and self.stopping_criterion(self.env, self.t)
def step_env(self):
### 2. Step the env and store the transition
# At this point, "self.last_obs" contains the latest observation that was
# recorded from the simulator. Here, your code needs to store this
# observation and its outcome (reward, next observation, etc.) into
# the replay buffer while stepping the simulator forward one step.
# At the end of this block of code, the simulator should have been
# advanced one step, and the replay buffer should contain one more
# transition.
# Specifically, self.last_obs must point to the new latest observation.
# Useful functions you'll need to call:
# obs, reward, done, info = env.step(action)
# this steps the environment forward one step
# obs = env.reset()
# this resets the environment if you reached an episode boundary.
# Don't forget to call env.reset() to get a new observation if done
# is true!!
# Note that you cannot use "self.last_obs" directly as input
# into your network, since it needs to be processed to include context
# from previous frames. You should check out the replay buffer
# implementation in dqn_utils.py to see what functionality the replay
# buffer exposes. The replay buffer has a function called
# encode_recent_observation that will take the latest observation
# that you pushed into the buffer and compute the corresponding
# input that should be given to a Q network by appending some
# previous frames.
# Don't forget to include epsilon greedy exploration!
# And remember that the first time you enter this loop, the model
# may not yet have been initialized (but of course, the first step
# might as well be random, since you haven't trained your net...)
idx = self.replay_buffer.store_frame(self.last_obs)
obs = self.replay_buffer.encode_recent_observation()
#checking if q_func was initialized
if not self.model_initialized:
ac = np.random.randint(self.num_actions)
else:
#Choosing eps-greedy action
eps = self.exploration.value(self.t)
if np.random.uniform() < eps:
ac = np.random.randint(self.num_actions)
else:
Q_vals = self.session.run(self.Q_vals, {self.obs_t_ph : obs[None]})
ac = np.argmax(Q_vals)
obs_tp1, rew, done, _ = self.env.step(ac)
self.replay_buffer.store_effect(idx, ac, rew, done)
if done:
obs_tp1 = self.env.reset()
self.last_obs = obs_tp1
def update_model(self):
### 3. Perform experience replay and train the network.
# note that this is only done if the replay buffer contains enough samples
# for us to learn something useful -- until then, the model will not be
# initialized and random actions should be taken
if (self.t > self.learning_starts and \
self.t % self.learning_freq == 0 and \
self.replay_buffer.can_sample(self.batch_size)):
# Here, you should perform training. Training consists of four steps:
# 3.a: use the replay buffer to sample a batch of transitions (see the
# replay buffer code for function definition, each batch that you sample
# should consist of current observations, current actions, rewards,
# next observations, and done indicator).
# 3.b: initialize the model if it has not been initialized yet; to do
# that, call
# initialize_interdependent_variables(self.session, tf.global_variables(), {
# self.obs_t_ph: obs_t_batch,
# self.obs_tp1_ph: obs_tp1_batch,
# })
# where obs_t_batch and obs_tp1_batch are the batches of observations at
# the current and next time step. The boolean variable model_initialized
# indicates whether or not the model has been initialized.
# Remember that you have to update the target network too (see 3.d)!
# 3.c: train the model. To do this, you'll need to use the self.train_fn and
# self.total_error ops that were created earlier: self.total_error is what you
# created to compute the total Bellman error in a batch, and self.train_fn
# will actually perform a gradient step and update the network parameters
# to reduce total_error. When calling self.session.run on these you'll need to
# populate the following placeholders:
# self.obs_t_ph
# self.act_t_ph
# self.rew_t_ph
# self.obs_tp1_ph
# self.done_mask_ph
# (this is needed for computing self.total_error)
# self.learning_rate -- you can get this from self.optimizer_spec.lr_schedule.value(t)
# (this is needed by the optimizer to choose the learning rate)
# 3.d: periodically update the target network by calling
# self.session.run(self.update_target_fn)
# you should update every target_update_freq steps, and you may find the
# variable self.num_param_updates useful for this (it was initialized to 0)
obs_batch, act_batch, rew_batch, obs_tp1_batch, done_mask = self.replay_buffer.sample(self.batch_size)
if not self.model_initialized:
initialize_interdependent_variables(self.session, tf.global_variables(),
{self.obs_t_ph : obs_batch, self.obs_tp1_ph : obs_tp1_batch})
self.model_initialized = True
self.session.run(self.train_fn, {self.obs_t_ph: obs_batch, self.act_t_ph: act_batch, self.rew_t_ph: rew_batch,
self.obs_tp1_ph: obs_tp1_batch, self.done_mask_ph: done_mask,
self.learning_rate : self.optimizer_spec.lr_schedule.value(self.t)},
options=tf.RunOptions(report_tensor_allocations_upon_oom=True))
if self.num_param_updates % self.target_update_freq == 0:
self.session.run(self.update_target_fn)
self.num_param_updates += 1
self.t += 1
def log_progress(self):
episode_rewards = get_wrapper_by_name(self.env, "Monitor").get_episode_rewards()
episode_lengths = get_wrapper_by_name(self.env, "Monitor").get_episode_lengths()
if len(episode_rewards) > 0:
self.mean_episode_reward = np.mean(episode_rewards[-100:])
if len(episode_rewards) > 100:
self.best_mean_episode_reward = max(self.best_mean_episode_reward, self.mean_episode_reward)
if self.t % self.log_every_n_steps == 0 and self.model_initialized:
print("Timestep %d, total length %d" % (self.t, np.sum(episode_lengths)))
print("mean reward (100 episodes) %f" % self.mean_episode_reward)
print("best mean reward %f" % self.best_mean_episode_reward)
print("episodes %d" % len(episode_rewards))
print("exploration %f" % self.exploration.value(self.t))
print("learning_rate %f" % self.optimizer_spec.lr_schedule.value(self.t))
if self.start_time is not None:
print("toral running time %f" % ((time.time() - self.start_time) / 60.))
sys.stdout.flush()
with open(self.rew_file, 'wb') as f:
pickle.dump((episode_rewards, episode_lengths), f, pickle.HIGHEST_PROTOCOL)
logz.log_tabular("TotalTime", time.time() - self.start_time)
logz.log_tabular("Timestep", self.t)
logz.log_tabular("MeanEpisodeReward", self.mean_episode_reward)
logz.log_tabular("MaxMeanReturn", self.best_mean_episode_reward)
logz.dump_tabular()
def learn(*args, **kwargs):
alg = QLearner(*args, **kwargs)
while not alg.stopping_criterion_met():
alg.step_env()
# at this point, the environment should have been advanced one step (and
# reset if done was true), and self.last_obs should point to the new latest
# observation
alg.update_model()
alg.log_progress()
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"numpy.mean",
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"tensorflow.group",
"numpy.sum",
"numpy.random.randint"
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shpach/ssd_keras | 08aca69e8cc1b1917aaec78d4c34a5cde22f404a | from tensorflow.python.lib.io import file_io
from keras.optimizers import Adam, SGD
from keras.callbacks import ModelCheckpoint, LearningRateScheduler, TerminateOnNaN, CSVLogger
from keras import backend as K
import tensorflow as tf
from keras.models import load_model
from keras.utils import plot_model
from math import ceil
import numpy as np
#from matplotlib import pyplot as plt
import os
import sys
sys.path.append(os.path.join(os.path.dirname(__file__)))
os.environ["TF_CPP_MIN_LOG_LEVEL"]="3"
from models.keras_ssd300 import ssd_300
from keras_loss_function.keras_ssd_loss import SSDLoss
from keras_layers.keras_layer_AnchorBoxes import AnchorBoxes
from keras_layers.keras_layer_DecodeDetections import DecodeDetections
from keras_layers.keras_layer_DecodeDetectionsFast import DecodeDetectionsFast
from keras_layers.keras_layer_L2Normalization import L2Normalization
from ssd_encoder_decoder.ssd_input_encoder import SSDInputEncoder
from ssd_encoder_decoder.ssd_output_decoder import decode_detections, decode_detections_fast
from data_generator.object_detection_2d_data_generator import DataGenerator
from data_generator.object_detection_2d_geometric_ops import Resize
from data_generator.object_detection_2d_photometric_ops import ConvertTo3Channels
from data_generator.data_augmentation_chain_original_ssd import SSDDataAugmentation
from data_generator.object_detection_2d_misc_utils import apply_inverse_transforms
from tensorflow.python.lib.io import file_io
import argparse
from tensorflow.python.client import device_lib
print("CHECK GPU USAGE!")
print(device_lib.list_local_devices())
K.tensorflow_backend._get_available_gpus()
img_height = 300 # Height of the model input images
img_width = 300 # Width of the model input images
img_channels = 3 # Number of color channels of the model input images
mean_color = [123, 117, 104] # The per-channel mean of the images in the dataset. Do not change this value if you're using any of the pre-trained weights.
swap_channels = [2, 1, 0] # The color channel order in the original SSD is BGR, so we'll have the model reverse the color channel order of the input images.
n_classes = 20 # Number of positive classes, e.g. 20 for Pascal VOC, 80 for MS COCO
scales_pascal = [0.1, 0.2, 0.37, 0.54, 0.71, 0.88, 1.05] # The anchor box scaling factors used in the original SSD300 for the Pascal VOC datasets
scales_coco = [0.07, 0.15, 0.33, 0.51, 0.69, 0.87, 1.05] # The anchor box scaling factors used in the original SSD300 for the MS COCO datasets
scales = scales_pascal
aspect_ratios = [[1.0, 2.0, 0.5, 3.0, 1.0/3.0, 4.0, 0.25],
[1.0, 2.0, 0.5, 3.0, 1.0/3.0, 4.0, 0.25],
[1.0, 2.0, 0.5, 3.0, 1.0/3.0],
[1.0, 2.0, 0.5, 3.0, 1.0/3.0],
[1.0, 2.0, 0.5, 3.0, 1.0/3.0],
[1.0, 2.0, 0.5, 3.0, 1.0/3.0]] # The anchor box aspect ratios used in the original SSD300; the order matters
two_boxes_for_ar1 = True
steps = [8, 16, 32, 64, 100, 300] # The space between two adjacent anchor box center points for each predictor layer.
offsets = [0.5, 0.5, 0.5, 0.5, 0.5, 0.5] # The offsets of the first anchor box center points from the top and left borders of the image as a fraction of the step size for each predictor layer.
clip_boxes = False # Whether or not to clip the anchor boxes to lie entirely within the image boundaries
variances = [0.1, 0.1, 0.2, 0.2] # The variances by which the encoded target coordinates are divided as in the original implementation
normalize_coords = True
def main(job_dir, **args):
##Setting up the path for saving logs
logs_dir = job_dir + 'logs/'
data_dir = "gs://deeplearningteam11/data"
print("Current Directory: " + os.path.dirname(__file__))
print("Lets copy the data to: " + os.path.dirname(__file__))
os.system("gsutil -m cp -r " + data_dir + " " + os.path.dirname(__file__) + " > /dev/null 2>&1 " )
#exit(0)
with tf.device('/device:GPU:0'):
# 1: Build the Keras model.
K.clear_session() # Clear previous models from memory.
model = ssd_300(image_size=(img_height, img_width, img_channels),
n_classes=n_classes,
mode='training',
l2_regularization=0.0005,
scales=scales,
aspect_ratios_per_layer=aspect_ratios,
two_boxes_for_ar1=two_boxes_for_ar1,
steps=steps,
offsets=offsets,
clip_boxes=clip_boxes,
variances=variances,
normalize_coords=normalize_coords,
subtract_mean=mean_color,
swap_channels=swap_channels)
adam = Adam(lr=0.001, beta_1=0.9, beta_2=0.999, epsilon=1e-08, decay=0.0)
ssd_loss = SSDLoss(neg_pos_ratio=3, alpha=1.0)
model.compile(optimizer=adam, loss=ssd_loss.compute_loss)
model.summary()
# 1: Instantiate two `DataGenerator` objects: One for training, one for validation.
train_dataset = DataGenerator(load_images_into_memory=True, hdf5_dataset_path=None)
val_dataset = DataGenerator(load_images_into_memory=True, hdf5_dataset_path=None)
# 2: Parse the image and label lists for the training and validation datasets. This can take a while.
# VOC 2007
# The directories that contain the images.
VOC_2007_train_images_dir = 'data/data/VOC2007/train/JPEGImages/'
VOC_2007_test_images_dir = 'data/data/VOC2007/test/JPEGImages/'
VOC_2007_train_anns_dir = 'data/data/VOC2007/train/Annotations/'
VOC_2007_test_anns_dir = 'data/data/VOC2007/test/Annotations/'
# The paths to the image sets.
VOC_2007_trainval_image_set_dir = 'data/data/VOC2007/train/ImageSets/Main/'
VOC_2007_test_image_set_dir = 'data/data/VOC2007/test/ImageSets/Main/'
VOC_2007_train_images_dir = os.path.dirname(__file__) + "/" + VOC_2007_train_images_dir
VOC_2007_test_images_dir = os.path.dirname(__file__) + "/" + VOC_2007_test_images_dir
VOC_2007_train_anns_dir = os.path.dirname(__file__) + "/" + VOC_2007_train_anns_dir
VOC_2007_test_anns_dir = os.path.dirname(__file__) + "/" + VOC_2007_test_anns_dir
VOC_2007_trainval_image_set_dir = os.path.dirname(__file__) + "/" + VOC_2007_trainval_image_set_dir
VOC_2007_test_image_set_dir = os.path.dirname(__file__) + "/" + VOC_2007_test_image_set_dir
VOC_2007_trainval_image_set_filename = VOC_2007_trainval_image_set_dir + '/trainval.txt'
VOC_2007_test_image_set_filename = VOC_2007_test_image_set_dir + '/test.txt'
# The XML parser needs to now what object class names to look for and in which order to map them to integers.
classes = ['background',
'aeroplane', 'bicycle', 'bird', 'boat',
'bottle', 'bus', 'car', 'cat',
'chair', 'cow', 'diningtable', 'dog',
'horse', 'motorbike', 'person', 'pottedplant',
'sheep', 'sofa', 'train', 'tvmonitor']
print("Parsing Training Data ...")
train_dataset.parse_xml(images_dirs=[VOC_2007_train_images_dir],
image_set_filenames=[VOC_2007_trainval_image_set_filename],
annotations_dirs=[VOC_2007_train_anns_dir],
classes=classes,
include_classes='all',
exclude_truncated=False,
exclude_difficult=False,
ret=False,
verbose=False)
print("Done")
print("================================================================")
print("Parsing Test Data ...")
val_dataset.parse_xml(images_dirs=[VOC_2007_test_images_dir],
image_set_filenames=[VOC_2007_test_image_set_filename],
annotations_dirs=[VOC_2007_test_anns_dir],
classes=classes,
include_classes='all',
exclude_truncated=False,
exclude_difficult=True,
ret=False,
verbose=False)
print("Done")
print("================================================================")
# 3: Set the batch size.
batch_size = 32 # Change the batch size if you like, or if you run into GPU memory issues.
# 4: Set the image transformations for pre-processing and data augmentation options.
# For the training generator:
ssd_data_augmentation = SSDDataAugmentation(img_height=img_height,
img_width=img_width,
background=mean_color)
# For the validation generator:
convert_to_3_channels = ConvertTo3Channels()
resize = Resize(height=img_height, width=img_width)
# 5: Instantiate an encoder that can encode ground truth labels into the format needed by the SSD loss function.
# The encoder constructor needs the spatial dimensions of the model's predictor layers to create the anchor boxes.
predictor_sizes = [model.get_layer('conv4_4_norm_mbox_conf').output_shape[1:3],
model.get_layer('fc7_mbox_conf').output_shape[1:3],
model.get_layer('conv8_2_mbox_conf').output_shape[1:3],
model.get_layer('conv9_2_mbox_conf').output_shape[1:3],
model.get_layer('conv10_2_mbox_conf').output_shape[1:3],
model.get_layer('conv11_2_mbox_conf').output_shape[1:3]]
ssd_input_encoder = SSDInputEncoder(img_height=img_height,
img_width=img_width,
n_classes=n_classes,
predictor_sizes=predictor_sizes,
scales=scales,
aspect_ratios_per_layer=aspect_ratios,
two_boxes_for_ar1=two_boxes_for_ar1,
steps=steps,
offsets=offsets,
clip_boxes=clip_boxes,
variances=variances,
matching_type='multi',
pos_iou_threshold=0.5,
neg_iou_limit=0.5,
normalize_coords=normalize_coords)
# 6: Create the generator handles that will be passed to Keras' `fit_generator()` function.
train_generator = train_dataset.generate(batch_size=batch_size,
shuffle=True,
transformations=[ssd_data_augmentation],
label_encoder=ssd_input_encoder,
returns={'processed_images',
'encoded_labels'},
keep_images_without_gt=False)
val_generator = val_dataset.generate(batch_size=batch_size,
shuffle=False,
transformations=[convert_to_3_channels,
resize],
label_encoder=ssd_input_encoder,
returns={'processed_images',
'encoded_labels'},
keep_images_without_gt=False)
# Get the number of samples in the training and validations datasets.
train_dataset_size = train_dataset.get_dataset_size()
val_dataset_size = val_dataset.get_dataset_size()
print("Number of images in the training dataset:\t{:>6}".format(train_dataset_size))
print("Number of images in the validation dataset:\t{:>6}".format(val_dataset_size))
# Define a learning rate schedule.
def lr_schedule(epoch):
if epoch < 80:
return 0.001
elif epoch < 100:
return 0.0001
else:
return 0.00001
learning_rate_scheduler = LearningRateScheduler(schedule=lr_schedule,
verbose=1)
terminate_on_nan = TerminateOnNaN()
callbacks = [learning_rate_scheduler,
terminate_on_nan]
# If you're resuming a previous training, set `initial_epoch` and `final_epoch` accordingly.
initial_epoch = 0
final_epoch = 120
steps_per_epoch = 500
history = model.fit_generator(generator=train_generator,
steps_per_epoch=steps_per_epoch,
epochs=final_epoch,
callbacks=callbacks,
validation_data=val_generator,
validation_steps=ceil(val_dataset_size/batch_size),
initial_epoch=initial_epoch)
model_name = "vgg19BNReLUmodel.h5"
model.save(model_name)
with file_io.FileIO(model_name, mode='rb') as input_f:
with file_io.FileIO("gs://deeplearningteam11/" + model_name, mode='w+') as output_f:
output_f.write(input_f.read())
##Running the app
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Input Arguments
parser.add_argument(
'--job-dir',
help='GCS location to write checkpoints and export models',
required=True
)
args = parser.parse_args()
arguments = args.__dict__
main(**arguments)
| [
"tensorflow.python.lib.io.file_io.FileIO",
"tensorflow.device",
"tensorflow.python.client.device_lib.list_local_devices"
] | train_ssd.py | [(37, 'keras.backend.tensorflow_backend._get_available_gpus', 'K.tensorflow_backend._get_available_gpus', ([], {}), True, 'from keras import backend as K\n'), (36, 'tensorflow.python.client.device_lib.list_local_devices', 'device_lib.list_local_devices', ([], {}), False, 'from tensorflow.python.client import device_lib\n'), (266, 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {}), False, 'import argparse\n'), (13, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (71, 'tensorflow.device', 'tf.device', (['"""/device:GPU:0"""'], {}), True, 'import tensorflow as tf\n'), (73, 'keras.backend.clear_session', 'K.clear_session', ([], {}), True, 'from keras import backend as K\n'), (74, 'models.keras_ssd300.ssd_300', 'ssd_300', ([], {'image_size': '(img_height, img_width, img_channels)', 'n_classes': 'n_classes', 'mode': '"""training"""', 'l2_regularization': '(0.0005)', 'scales': 'scales', 'aspect_ratios_per_layer': 'aspect_ratios', 'two_boxes_for_ar1': 'two_boxes_for_ar1', 'steps': 'steps', 'offsets': 'offsets', 'clip_boxes': 'clip_boxes', 'variances': 'variances', 'normalize_coords': 'normalize_coords', 'subtract_mean': 'mean_color', 'swap_channels': 'swap_channels'}), False, 'from models.keras_ssd300 import ssd_300\n'), (89, 'keras.optimizers.Adam', 'Adam', ([], {'lr': '(0.001)', 'beta_1': '(0.9)', 'beta_2': '(0.999)', 'epsilon': '(1e-08)', 'decay': '(0.0)'}), False, 'from keras.optimizers import Adam, SGD\n'), (90, 'keras_loss_function.keras_ssd_loss.SSDLoss', 'SSDLoss', ([], {'neg_pos_ratio': '(3)', 'alpha': '(1.0)'}), False, 'from keras_loss_function.keras_ssd_loss import SSDLoss\n'), (96, 'data_generator.object_detection_2d_data_generator.DataGenerator', 'DataGenerator', ([], {'load_images_into_memory': '(True)', 'hdf5_dataset_path': 'None'}), False, 'from data_generator.object_detection_2d_data_generator import DataGenerator\n'), (97, 'data_generator.object_detection_2d_data_generator.DataGenerator', 'DataGenerator', ([], {'load_images_into_memory': '(True)', 'hdf5_dataset_path': 'None'}), False, 'from data_generator.object_detection_2d_data_generator import DataGenerator\n'), (164, 'data_generator.data_augmentation_chain_original_ssd.SSDDataAugmentation', 'SSDDataAugmentation', ([], {'img_height': 'img_height', 'img_width': 'img_width', 'background': 'mean_color'}), False, 'from data_generator.data_augmentation_chain_original_ssd import SSDDataAugmentation\n'), (169, 'data_generator.object_detection_2d_photometric_ops.ConvertTo3Channels', 'ConvertTo3Channels', ([], {}), False, 'from data_generator.object_detection_2d_photometric_ops import ConvertTo3Channels\n'), (170, 'data_generator.object_detection_2d_geometric_ops.Resize', 'Resize', ([], {'height': 'img_height', 'width': 'img_width'}), False, 'from data_generator.object_detection_2d_geometric_ops import Resize\n'), (182, 'ssd_encoder_decoder.ssd_input_encoder.SSDInputEncoder', 'SSDInputEncoder', ([], {'img_height': 'img_height', 'img_width': 'img_width', 'n_classes': 'n_classes', 'predictor_sizes': 'predictor_sizes', 'scales': 'scales', 'aspect_ratios_per_layer': 'aspect_ratios', 'two_boxes_for_ar1': 'two_boxes_for_ar1', 'steps': 'steps', 'offsets': 'offsets', 'clip_boxes': 'clip_boxes', 'variances': 'variances', 'matching_type': '"""multi"""', 'pos_iou_threshold': '(0.5)', 'neg_iou_limit': '(0.5)', 'normalize_coords': 'normalize_coords'}), False, 'from ssd_encoder_decoder.ssd_input_encoder import SSDInputEncoder\n'), (234, 'keras.callbacks.LearningRateScheduler', 'LearningRateScheduler', ([], {'schedule': 'lr_schedule', 'verbose': '(1)'}), False, 'from keras.callbacks import ModelCheckpoint, LearningRateScheduler, TerminateOnNaN, CSVLogger\n'), (237, 'keras.callbacks.TerminateOnNaN', 'TerminateOnNaN', ([], {}), False, 'from keras.callbacks import ModelCheckpoint, LearningRateScheduler, TerminateOnNaN, CSVLogger\n'), (66, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (67, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (258, 'tensorflow.python.lib.io.file_io.FileIO', 'file_io.FileIO', (['model_name'], {'mode': '"""rb"""'}), False, 'from tensorflow.python.lib.io import file_io\n'), (68, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (112, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (113, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (115, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (116, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (118, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (119, 'os.path.dirname', 'os.path.dirname', (['__file__'], {}), False, 'import os\n'), (253, 'math.ceil', 'ceil', (['(val_dataset_size / batch_size)'], {}), False, 'from math import ceil\n'), (259, 'tensorflow.python.lib.io.file_io.FileIO', 'file_io.FileIO', (["('gs://deeplearningteam11/' + model_name)"], {'mode': '"""w+"""'}), False, 'from tensorflow.python.lib.io import file_io\n')] |
elentail/Serving | 5aad0d310420bae31ab06972e4837b8309fda057 | import os
import numpy as np
import tensorflow as tf
# fixed folder
saved_model_dir = "tf_cnn_model/1/"
target_dir = "tflite_cnn_model"
def convert_tflite():
if not os.path.exists(target_dir):
os.makedirs(target_dir)
converter = tf.lite.TFLiteConverter.from_saved_model(saved_model_dir)
#converter.optimizations = [tf.lite.Optimize.DEFAULT]
converter.optimizations = [tf.lite.Optimize.OPTIMIZE_FOR_LATENCY]
tflite_model = converter.convert()
with open(f"{target_dir}/tflite_model.tflite", "wb") as f:
f.write(tflite_model)
def validation():
(x_train, y_train), (x_test, y_test) = tf.keras.datasets.mnist.load_data()
images = tf.convert_to_tensor(np.expand_dims(x_test/255.0, -1),dtype=tf.float32)
# Load the TFLite model in TFLite Interpreter
interpreter = tf.lite.Interpreter(f"{target_dir}/tflite_model.tflite")
# Model has single input.
in_node = interpreter.get_input_details()[0]
in_shape = in_node['shape']
# Model has single output.
out_node = interpreter.get_output_details()[0]
out_shape = out_node['shape']
# Resize Tensor (batch size)
interpreter.resize_tensor_input(in_node['index'],[len(images), in_shape[1], in_shape[2], in_shape[3]])
interpreter.resize_tensor_input(out_node['index'],[len(images), out_shape[1]])
# Needed before execution!
interpreter.allocate_tensors()
interpreter.set_tensor(in_node['index'], images)
interpreter.invoke()
prediction = interpreter.get_tensor(out_node['index'])
result = tf.argmax( prediction ,axis=1).numpy()
print('accuracy={:.4f}'.format(np.sum(result == y_test)/y_test.shape[0]))
if __name__ == '__main__':
convert_tflite()
validation() | [
"numpy.expand_dims",
"tensorflow.lite.Interpreter",
"tensorflow.keras.datasets.mnist.load_data",
"tensorflow.lite.TFLiteConverter.from_saved_model",
"tensorflow.argmax",
"numpy.sum"
] | convert_tflite.py | [(14, 'tensorflow.lite.TFLiteConverter.from_saved_model', 'tf.lite.TFLiteConverter.from_saved_model', (['saved_model_dir'], {}), True, 'import tensorflow as tf\n'), (25, 'tensorflow.keras.datasets.mnist.load_data', 'tf.keras.datasets.mnist.load_data', ([], {}), True, 'import tensorflow as tf\n'), (29, 'tensorflow.lite.Interpreter', 'tf.lite.Interpreter', (['f"""{target_dir}/tflite_model.tflite"""'], {}), True, 'import tensorflow as tf\n'), (11, 'os.path.exists', 'os.path.exists', (['target_dir'], {}), False, 'import os\n'), (12, 'os.makedirs', 'os.makedirs', (['target_dir'], {}), False, 'import os\n'), (26, 'numpy.expand_dims', 'np.expand_dims', (['(x_test / 255.0)', '(-1)'], {}), True, 'import numpy as np\n'), (49, 'tensorflow.argmax', 'tf.argmax', (['prediction'], {'axis': '(1)'}), True, 'import tensorflow as tf\n'), (50, 'numpy.sum', 'np.sum', (['(result == y_test)'], {}), True, 'import numpy as np\n')] |
reachlin/machinelearning | eb8ba02aa0da86ccf9991fa609afa84d8c180a21 | """
Modified from: https://github.com/tensorflow/models/blob/master/tutorials/rnn/ptb/ptb_word_lm.py
RNN with LSTM cells
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import time
import numpy as np
import tensorflow as tf
import reader
import util
from tensorflow.python.client import device_lib
flags = tf.flags
logging = tf.logging
flags.DEFINE_string(
"model", "small",
"A type of model. Possible options are: small, medium, large.")
flags.DEFINE_string("data_path", None,
"Where the training/test data is stored.")
flags.DEFINE_string("save_path", None,
"Model output directory.")
flags.DEFINE_bool("use_fp16", False,
"Train using 16-bit floats instead of 32bit floats")
flags.DEFINE_integer("num_gpus", 1,
"If larger than 1, Grappler AutoParallel optimizer "
"will create multiple training replicas with each GPU "
"running one replica.")
flags.DEFINE_string("rnn_mode", None,
"The low level implementation of lstm cell: one of CUDNN, "
"BASIC, and BLOCK, representing cudnn_lstm, basic_lstm, "
"and lstm_block_cell classes.")
FLAGS = flags.FLAGS
BASIC = "basic"
CUDNN = "cudnn"
BLOCK = "block"
def data_type():
return tf.float16 if FLAGS.use_fp16 else tf.float32
class PTBInput(object):
"""The input data."""
def __init__(self, config, data, name=None):
self.batch_size = batch_size = config.batch_size
self.num_steps = num_steps = config.num_steps
self.epoch_size = ((len(data) // batch_size) - 1) // num_steps
self.input_data, self.targets = reader.ptb_producer(
data, batch_size, num_steps, name=name)
class PTBModel(object):
"""The PTB model."""
def __init__(self, is_training, config, input_):
self._is_training = is_training
self._input = input_
self._rnn_params = None
self._cell = None
self.batch_size = input_.batch_size
self.num_steps = input_.num_steps
size = config.hidden_size
vocab_size = config.vocab_size
with tf.device("/cpu:0"):
embedding = tf.get_variable(
"embedding", [vocab_size, size], dtype=data_type())
inputs = tf.nn.embedding_lookup(embedding, input_.input_data)
if is_training and config.keep_prob < 1:
inputs = tf.nn.dropout(inputs, config.keep_prob)
output, state = self._build_rnn_graph(inputs, config, is_training)
softmax_w = tf.get_variable(
"softmax_w", [size, vocab_size], dtype=data_type())
softmax_b = tf.get_variable("softmax_b", [vocab_size], dtype=data_type())
logits = tf.nn.xw_plus_b(output, softmax_w, softmax_b)
# Reshape logits to be a 3-D tensor for sequence loss
logits = tf.reshape(logits, [self.batch_size, self.num_steps, vocab_size])
# Use the contrib sequence loss and average over the batches
loss = tf.contrib.seq2seq.sequence_loss(
logits,
input_.targets,
tf.ones([self.batch_size, self.num_steps], dtype=data_type()),
average_across_timesteps=False,
average_across_batch=True)
# Update the cost
self._cost = tf.reduce_sum(loss)
self._final_state = state
if not is_training:
return
self._lr = tf.Variable(0.0, trainable=False)
tvars = tf.trainable_variables()
grads, _ = tf.clip_by_global_norm(tf.gradients(self._cost, tvars),
config.max_grad_norm)
optimizer = tf.train.GradientDescentOptimizer(self._lr)
self._train_op = optimizer.apply_gradients(
zip(grads, tvars),
global_step=tf.contrib.framework.get_or_create_global_step())
self._new_lr = tf.placeholder(
tf.float32, shape=[], name="new_learning_rate")
self._lr_update = tf.assign(self._lr, self._new_lr)
def _build_rnn_graph(self, inputs, config, is_training):
if config.rnn_mode == CUDNN:
return self._build_rnn_graph_cudnn(inputs, config, is_training)
else:
return self._build_rnn_graph_lstm(inputs, config, is_training)
def _build_rnn_graph_cudnn(self, inputs, config, is_training):
"""Build the inference graph using CUDNN cell."""
inputs = tf.transpose(inputs, [1, 0, 2])
self._cell = tf.contrib.cudnn_rnn.CudnnLSTM(
num_layers=config.num_layers,
num_units=config.hidden_size,
input_size=config.hidden_size,
dropout=1 - config.keep_prob if is_training else 0)
params_size_t = self._cell.params_size()
self._rnn_params = tf.get_variable(
"lstm_params",
initializer=tf.random_uniform(
[params_size_t], -config.init_scale, config.init_scale),
validate_shape=False)
c = tf.zeros([config.num_layers, self.batch_size, config.hidden_size],
tf.float32)
h = tf.zeros([config.num_layers, self.batch_size, config.hidden_size],
tf.float32)
self._initial_state = (tf.contrib.rnn.LSTMStateTuple(h=h, c=c),)
outputs, h, c = self._cell(inputs, h, c, self._rnn_params, is_training)
outputs = tf.transpose(outputs, [1, 0, 2])
outputs = tf.reshape(outputs, [-1, config.hidden_size])
return outputs, (tf.contrib.rnn.LSTMStateTuple(h=h, c=c),)
def _get_lstm_cell(self, config, is_training):
if config.rnn_mode == BASIC:
return tf.contrib.rnn.BasicLSTMCell(
config.hidden_size, forget_bias=0.0, state_is_tuple=True,
reuse=not is_training)
if config.rnn_mode == BLOCK:
return tf.contrib.rnn.LSTMBlockCell(
config.hidden_size, forget_bias=0.0)
raise ValueError("rnn_mode %s not supported" % config.rnn_mode)
def _build_rnn_graph_lstm(self, inputs, config, is_training):
"""Build the inference graph using canonical LSTM cells."""
# Slightly better results can be obtained with forget gate biases
# initialized to 1 but the hyperparameters of the model would need to be
# different than reported in the paper.
cell = self._get_lstm_cell(config, is_training)
if is_training and config.keep_prob < 1:
cell = tf.contrib.rnn.DropoutWrapper(
cell, output_keep_prob=config.keep_prob)
cell = tf.contrib.rnn.MultiRNNCell(
[cell for _ in range(config.num_layers)], state_is_tuple=True)
self._initial_state = cell.zero_state(config.batch_size, data_type())
state = self._initial_state
# Simplified version of tensorflow_models/tutorials/rnn/rnn.py's rnn().
# This builds an unrolled LSTM for tutorial purposes only.
# In general, use the rnn() or state_saving_rnn() from rnn.py.
#
# The alternative version of the code below is:
#
# inputs = tf.unstack(inputs, num=num_steps, axis=1)
# outputs, state = tf.contrib.rnn.static_rnn(cell, inputs,
# initial_state=self._initial_state)
outputs = []
with tf.variable_scope("RNN"):
for time_step in range(self.num_steps):
if time_step > 0: tf.get_variable_scope().reuse_variables()
(cell_output, state) = cell(inputs[:, time_step, :], state)
outputs.append(cell_output)
output = tf.reshape(tf.concat(outputs, 1), [-1, config.hidden_size])
return output, state
def assign_lr(self, session, lr_value):
session.run(self._lr_update, feed_dict={self._new_lr: lr_value})
def export_ops(self, name):
"""Exports ops to collections."""
self._name = name
ops = {util.with_prefix(self._name, "cost"): self._cost}
if self._is_training:
ops.update(lr=self._lr, new_lr=self._new_lr, lr_update=self._lr_update)
if self._rnn_params:
ops.update(rnn_params=self._rnn_params)
for name, op in ops.iteritems():
tf.add_to_collection(name, op)
self._initial_state_name = util.with_prefix(self._name, "initial")
self._final_state_name = util.with_prefix(self._name, "final")
util.export_state_tuples(self._initial_state, self._initial_state_name)
util.export_state_tuples(self._final_state, self._final_state_name)
def import_ops(self):
"""Imports ops from collections."""
if self._is_training:
self._train_op = tf.get_collection_ref("train_op")[0]
self._lr = tf.get_collection_ref("lr")[0]
self._new_lr = tf.get_collection_ref("new_lr")[0]
self._lr_update = tf.get_collection_ref("lr_update")[0]
rnn_params = tf.get_collection_ref("rnn_params")
if self._cell and rnn_params:
params_saveable = tf.contrib.cudnn_rnn.RNNParamsSaveable(
self._cell,
self._cell.params_to_canonical,
self._cell.canonical_to_params,
rnn_params,
base_variable_scope="Model/RNN")
tf.add_to_collection(tf.GraphKeys.SAVEABLE_OBJECTS, params_saveable)
self._cost = tf.get_collection_ref(util.with_prefix(self._name, "cost"))[0]
num_replicas = FLAGS.num_gpus if self._name == "Train" else 1
self._initial_state = util.import_state_tuples(
self._initial_state, self._initial_state_name, num_replicas)
self._final_state = util.import_state_tuples(
self._final_state, self._final_state_name, num_replicas)
@property
def input(self):
return self._input
@property
def initial_state(self):
return self._initial_state
@property
def cost(self):
return self._cost
@property
def final_state(self):
return self._final_state
@property
def lr(self):
return self._lr
@property
def train_op(self):
return self._train_op
@property
def initial_state_name(self):
return self._initial_state_name
@property
def final_state_name(self):
return self._final_state_name
class SmallConfig(object):
"""Small config."""
init_scale = 0.1
learning_rate = 1.0
max_grad_norm = 5
num_layers = 2
num_steps = 20
hidden_size = 200
max_epoch = 4
max_max_epoch = 13
keep_prob = 1.0
lr_decay = 0.5
batch_size = 20
vocab_size = 10000
rnn_mode = CUDNN
class MediumConfig(object):
"""Medium config."""
init_scale = 0.05
learning_rate = 1.0
max_grad_norm = 5
num_layers = 2
num_steps = 35
hidden_size = 650
max_epoch = 6
max_max_epoch = 39
keep_prob = 0.5
lr_decay = 0.8
batch_size = 20
vocab_size = 10000
rnn_mode = BLOCK
class LargeConfig(object):
"""Large config."""
init_scale = 0.04
learning_rate = 1.0
max_grad_norm = 10
num_layers = 2
num_steps = 35
hidden_size = 1500
max_epoch = 14
max_max_epoch = 55
keep_prob = 0.35
lr_decay = 1 / 1.15
batch_size = 20
vocab_size = 10000
rnn_mode = BLOCK
class TestConfig(object):
"""Tiny config, for testing."""
init_scale = 0.1
learning_rate = 1.0
max_grad_norm = 1
num_layers = 1
num_steps = 2
hidden_size = 2
max_epoch = 1
max_max_epoch = 1
keep_prob = 1.0
lr_decay = 0.5
batch_size = 20
vocab_size = 10000
rnn_mode = BLOCK
def run_epoch(session, model, eval_op=None, verbose=False):
"""Runs the model on the given data."""
start_time = time.time()
costs = 0.0
iters = 0
state = session.run(model.initial_state)
fetches = {
"cost": model.cost,
"final_state": model.final_state,
}
if eval_op is not None:
fetches["eval_op"] = eval_op
for step in range(model.input.epoch_size):
feed_dict = {}
for i, (c, h) in enumerate(model.initial_state):
feed_dict[c] = state[i].c
feed_dict[h] = state[i].h
vals = session.run(fetches, feed_dict)
cost = vals["cost"]
state = vals["final_state"]
costs += cost
iters += model.input.num_steps
if verbose and step % (model.input.epoch_size // 10) == 10:
print("%.3f perplexity: %.3f speed: %.0f wps" %
(step * 1.0 / model.input.epoch_size, np.exp(costs / iters),
iters * model.input.batch_size * max(1, FLAGS.num_gpus) /
(time.time() - start_time)))
return np.exp(costs / iters)
def get_config():
"""Get model config."""
config = None
if FLAGS.model == "small":
config = SmallConfig()
elif FLAGS.model == "medium":
config = MediumConfig()
elif FLAGS.model == "large":
config = LargeConfig()
elif FLAGS.model == "test":
config = TestConfig()
else:
raise ValueError("Invalid model: %s", FLAGS.model)
if FLAGS.rnn_mode:
config.rnn_mode = FLAGS.rnn_mode
if FLAGS.num_gpus != 1 or tf.__version__ < "1.3.0" :
config.rnn_mode = BASIC
return config
def main(_):
if not FLAGS.data_path:
raise ValueError("Must set --data_path to PTB data directory")
gpus = [
x.name for x in device_lib.list_local_devices() if x.device_type == "GPU"
]
if FLAGS.num_gpus > len(gpus):
raise ValueError(
"Your machine has only %d gpus "
"which is less than the requested --num_gpus=%d."
% (len(gpus), FLAGS.num_gpus))
raw_data = reader.ptb_raw_data(FLAGS.data_path)
train_data, valid_data, test_data, _ = raw_data
config = get_config()
eval_config = get_config()
eval_config.batch_size = 1
eval_config.num_steps = 1
with tf.Graph().as_default():
initializer = tf.random_uniform_initializer(-config.init_scale,
config.init_scale)
with tf.name_scope("Train"):
train_input = PTBInput(config=config, data=train_data, name="TrainInput")
with tf.variable_scope("Model", reuse=None, initializer=initializer):
m = PTBModel(is_training=True, config=config, input_=train_input)
tf.summary.scalar("Training Loss", m.cost)
tf.summary.scalar("Learning Rate", m.lr)
with tf.name_scope("Valid"):
valid_input = PTBInput(config=config, data=valid_data, name="ValidInput")
with tf.variable_scope("Model", reuse=True, initializer=initializer):
mvalid = PTBModel(is_training=False, config=config, input_=valid_input)
tf.summary.scalar("Validation Loss", mvalid.cost)
with tf.name_scope("Test"):
test_input = PTBInput(
config=eval_config, data=test_data, name="TestInput")
with tf.variable_scope("Model", reuse=True, initializer=initializer):
mtest = PTBModel(is_training=False, config=eval_config,
input_=test_input)
models = {"Train": m, "Valid": mvalid, "Test": mtest}
for name, model in models.iteritems():
model.export_ops(name)
metagraph = tf.train.export_meta_graph()
if tf.__version__ < "1.1.0" and FLAGS.num_gpus > 1:
raise ValueError("num_gpus > 1 is not supported for TensorFlow versions "
"below 1.1.0")
soft_placement = False
if FLAGS.num_gpus > 1:
soft_placement = True
util.auto_parallel(metagraph, m)
with tf.Graph().as_default():
tf.train.import_meta_graph(metagraph)
for model in models.values():
model.import_ops()
sv = tf.train.Supervisor(logdir=FLAGS.save_path)
config_proto = tf.ConfigProto(allow_soft_placement=soft_placement)
with sv.managed_session(config=config_proto) as session:
for i in range(config.max_max_epoch):
lr_decay = config.lr_decay ** max(i + 1 - config.max_epoch, 0.0)
m.assign_lr(session, config.learning_rate * lr_decay)
print("Epoch: %d Learning rate: %.3f" % (i + 1, session.run(m.lr)))
train_perplexity = run_epoch(session, m, eval_op=m.train_op,
verbose=True)
print("Epoch: %d Train Perplexity: %.3f" % (i + 1, train_perplexity))
valid_perplexity = run_epoch(session, mvalid)
print("Epoch: %d Valid Perplexity: %.3f" % (i + 1, valid_perplexity))
test_perplexity = run_epoch(session, mtest)
print("Test Perplexity: %.3f" % test_perplexity)
if FLAGS.save_path:
print("Saving model to %s." % FLAGS.save_path)
sv.saver.save(session, FLAGS.save_path, global_step=sv.global_step)
if __name__ == "__main__":
tf.app.run() | [
"tensorflow.device",
"tensorflow.concat",
"tensorflow.python.client.device_lib.list_local_devices",
"tensorflow.zeros",
"tensorflow.reduce_sum",
"tensorflow.contrib.rnn.LSTMBlockCell",
"numpy.exp",
"tensorflow.summary.scalar",
"tensorflow.Graph",
"tensorflow.Variable",
"tensorflow.random_uniform_initializer",
"tensorflow.train.export_meta_graph",
"tensorflow.gradients",
"tensorflow.train.import_meta_graph",
"tensorflow.ConfigProto",
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"tensorflow.trainable_variables",
"tensorflow.app.run",
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"tensorflow.train.GradientDescentOptimizer",
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"tensorflow.nn.embedding_lookup",
"tensorflow.transpose",
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"tensorflow.contrib.rnn.BasicLSTMCell",
"tensorflow.get_collection_ref",
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"tensorflow.variable_scope",
"tensorflow.contrib.framework.get_or_create_global_step",
"tensorflow.get_variable_scope",
"tensorflow.random_uniform"
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chisyliu/RotationDetection | 4249720ea4dacdd60e696901df8034e5cd0a1843 | # -*- coding:utf-8 -*-
# Author: Xue Yang <[email protected]>, <[email protected]>
# License: Apache-2.0 license
# Copyright (c) SJTU. ALL rights reserved.
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os
import sys
import numpy as np
import tensorflow as tf
import tensorflow.contrib.slim as slim
sys.path.append("../../")
from tools.train_base import Train
from configs import cfgs
from alpharotate.libs.models.detectors.r3det_dcl import build_whole_network
from alpharotate.libs.utils.coordinate_convert import backward_convert, get_horizen_minAreaRectangle
from alpharotate.utils.densely_coded_label import angle_label_encode
from alpharotate.libs.utils.coordinate_convert import coordinate_present_convert
from alpharotate.utils.pretrain_zoo import PretrainModelZoo
os.environ["CUDA_VISIBLE_DEVICES"] = cfgs.GPU_GROUP
class TrainR3DetDCL(Train):
def get_gtboxes_and_label(self, gtboxes_and_label_h, gtboxes_and_label_r, num_objects):
return gtboxes_and_label_h[:int(num_objects), :].astype(np.float32), \
gtboxes_and_label_r[:int(num_objects), :].astype(np.float32)
def main(self):
with tf.Graph().as_default() as graph, tf.device('/cpu:0'):
num_gpu = len(cfgs.GPU_GROUP.strip().split(','))
global_step = slim.get_or_create_global_step()
lr = self.warmup_lr(cfgs.LR, global_step, cfgs.WARM_SETP, num_gpu)
tf.summary.scalar('lr', lr)
optimizer = tf.train.MomentumOptimizer(lr, momentum=cfgs.MOMENTUM)
r3det_dcl = build_whole_network.DetectionNetworkR3DetDCL(cfgs=self.cfgs,
is_training=True)
with tf.name_scope('get_batch'):
if cfgs.IMAGE_PYRAMID:
shortside_len_list = tf.constant(cfgs.IMG_SHORT_SIDE_LEN)
shortside_len = tf.random_shuffle(shortside_len_list)[0]
else:
shortside_len = cfgs.IMG_SHORT_SIDE_LEN
img_name_batch, img_batch, gtboxes_and_label_batch, num_objects_batch, img_h_batch, img_w_batch = \
self.reader.next_batch(dataset_name=cfgs.DATASET_NAME,
batch_size=cfgs.BATCH_SIZE * num_gpu,
shortside_len=shortside_len,
is_training=True)
# data processing
inputs_list = []
for i in range(num_gpu):
img = tf.expand_dims(img_batch[i], axis=0)
pretrain_zoo = PretrainModelZoo()
if self.cfgs.NET_NAME in pretrain_zoo.pth_zoo or self.cfgs.NET_NAME in pretrain_zoo.mxnet_zoo:
img = img / tf.constant([cfgs.PIXEL_STD])
gtboxes_and_label_r = tf.py_func(backward_convert,
inp=[gtboxes_and_label_batch[i]],
Tout=tf.float32)
gtboxes_and_label_r = tf.reshape(gtboxes_and_label_r, [-1, 6])
gtboxes_and_label_h = get_horizen_minAreaRectangle(gtboxes_and_label_batch[i])
gtboxes_and_label_h = tf.reshape(gtboxes_and_label_h, [-1, 5])
num_objects = num_objects_batch[i]
num_objects = tf.cast(tf.reshape(num_objects, [-1, ]), tf.float32)
img_h = img_h_batch[i]
img_w = img_w_batch[i]
inputs_list.append([img, gtboxes_and_label_h, gtboxes_and_label_r, num_objects, img_h, img_w])
tower_grads = []
biases_regularizer = tf.no_regularizer
weights_regularizer = tf.contrib.layers.l2_regularizer(cfgs.WEIGHT_DECAY)
with tf.variable_scope(tf.get_variable_scope()):
for i in range(num_gpu):
with tf.device('/gpu:%d' % i):
with tf.name_scope('tower_%d' % i):
with slim.arg_scope(
[slim.model_variable, slim.variable],
device='/device:CPU:0'):
with slim.arg_scope([slim.conv2d, slim.conv2d_in_plane,
slim.conv2d_transpose, slim.separable_conv2d,
slim.fully_connected],
weights_regularizer=weights_regularizer,
biases_regularizer=biases_regularizer,
biases_initializer=tf.constant_initializer(0.0)):
gtboxes_and_label_h, gtboxes_and_label_r = tf.py_func(self.get_gtboxes_and_label,
inp=[inputs_list[i][1],
inputs_list[i][2],
inputs_list[i][3]],
Tout=[tf.float32, tf.float32])
gtboxes_and_label_h = tf.reshape(gtboxes_and_label_h, [-1, 5])
gtboxes_and_label_r = tf.reshape(gtboxes_and_label_r, [-1, 6])
if cfgs.ANGLE_RANGE == 180:
gtboxes_and_label_r_ = tf.py_func(coordinate_present_convert,
inp=[gtboxes_and_label_r, -1],
Tout=tf.float32)
gtboxes_and_label_r_ = tf.reshape(gtboxes_and_label_r_, [-1, 6])
gt_encode_label = tf.py_func(angle_label_encode,
inp=[gtboxes_and_label_r_[:, -2], cfgs.ANGLE_RANGE,
cfgs.OMEGA, cfgs.ANGLE_MODE],
Tout=tf.float32)
else:
gt_encode_label = tf.py_func(angle_label_encode,
inp=[gtboxes_and_label_r[:, -2], cfgs.ANGLE_RANGE,
cfgs.OMEGA, cfgs.ANGLE_MODE],
Tout=tf.float32)
img = inputs_list[i][0]
img_shape = inputs_list[i][-2:]
img = tf.image.crop_to_bounding_box(image=img,
offset_height=0,
offset_width=0,
target_height=tf.cast(img_shape[0], tf.int32),
target_width=tf.cast(img_shape[1], tf.int32))
outputs = r3det_dcl.build_whole_detection_network(input_img_batch=img,
gtboxes_batch_h=gtboxes_and_label_h,
gtboxes_batch_r=gtboxes_and_label_r,
gt_encode_label=gt_encode_label,
gpu_id=i)
gtboxes_in_img_h = self.drawer.draw_boxes_with_categories(img_batch=img,
boxes=gtboxes_and_label_h[
:, :-1],
labels=gtboxes_and_label_h[
:, -1],
method=0)
gtboxes_in_img_r = self.drawer.draw_boxes_with_categories(img_batch=img,
boxes=gtboxes_and_label_r[
:, :-1],
labels=gtboxes_and_label_r[
:, -1],
method=1,
is_csl=True)
tf.summary.image('Compare/gtboxes_h_gpu:%d' % i, gtboxes_in_img_h)
tf.summary.image('Compare/gtboxes_r_gpu:%d' % i, gtboxes_in_img_r)
if cfgs.ADD_BOX_IN_TENSORBOARD:
detections_in_img = self.drawer.draw_boxes_with_categories_and_scores(
img_batch=img,
boxes=outputs[0],
scores=outputs[1],
labels=outputs[2],
method=1,
is_csl=True)
tf.summary.image('Compare/final_detection_gpu:%d' % i, detections_in_img)
loss_dict = outputs[-1]
total_loss_dict, total_losses = self.loss_dict(loss_dict, num_gpu)
if i == num_gpu - 1:
regularization_losses = tf.get_collection(
tf.GraphKeys.REGULARIZATION_LOSSES)
# weight_decay_loss = tf.add_n(slim.losses.get_regularization_losses())
total_losses = total_losses + tf.add_n(regularization_losses)
tf.get_variable_scope().reuse_variables()
grads = optimizer.compute_gradients(total_losses)
if cfgs.GRADIENT_CLIPPING_BY_NORM is not None:
grads = slim.learning.clip_gradient_norms(grads, cfgs.GRADIENT_CLIPPING_BY_NORM)
tower_grads.append(grads)
self.log_printer(r3det_dcl, optimizer, global_step, tower_grads, total_loss_dict, num_gpu, graph)
if __name__ == '__main__':
trainer = TrainR3DetDCL(cfgs)
trainer.main() | [
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"tensorflow.random_shuffle",
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"tensorflow.contrib.layers.l2_regularizer",
"tensorflow.get_variable_scope"
] | tools/r3det_dcl/train.py | [(17, 'sys.path.append', 'sys.path.append', (['"""../../"""'], {}), False, 'import sys\n'), (37, 'tensorflow.device', 'tf.device', (['"""/cpu:0"""'], {}), True, 'import tensorflow as tf\n'), (40, 'tensorflow.contrib.slim.get_or_create_global_step', 'slim.get_or_create_global_step', ([], {}), True, 'import tensorflow.contrib.slim as slim\n'), (42, 'tensorflow.summary.scalar', 'tf.summary.scalar', (['"""lr"""', 'lr'], {}), True, 'import tensorflow as tf\n'), (44, 'tensorflow.train.MomentumOptimizer', 'tf.train.MomentumOptimizer', (['lr'], {'momentum': 'cfgs.MOMENTUM'}), True, 'import tensorflow as tf\n'), (45, 'alpharotate.libs.models.detectors.r3det_dcl.build_whole_network.DetectionNetworkR3DetDCL', 'build_whole_network.DetectionNetworkR3DetDCL', ([], {'cfgs': 'self.cfgs', 'is_training': '(True)'}), False, 'from alpharotate.libs.models.detectors.r3det_dcl import build_whole_network\n'), (88, 'tensorflow.contrib.layers.l2_regularizer', 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backward_convert, get_horizen_minAreaRectangle\n'), (76, 'tensorflow.reshape', 'tf.reshape', (['gtboxes_and_label_h', '[-1, 5]'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.Graph', 'tf.Graph', ([], {}), True, 'import tensorflow as tf\n'), (50, 'tensorflow.constant', 'tf.constant', (['cfgs.IMG_SHORT_SIDE_LEN'], {}), True, 'import tensorflow as tf\n'), (79, 'tensorflow.reshape', 'tf.reshape', (['num_objects', '[-1]'], {}), True, 'import tensorflow as tf\n'), (90, 'tensorflow.get_variable_scope', 'tf.get_variable_scope', ([], {}), True, 'import tensorflow as tf\n'), (39, 'configs.cfgs.GPU_GROUP.strip', 'cfgs.GPU_GROUP.strip', ([], {}), False, 'from configs import cfgs\n'), (51, 'tensorflow.random_shuffle', 'tf.random_shuffle', (['shortside_len_list'], {}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.constant', 'tf.constant', (['[cfgs.PIXEL_STD]'], {}), True, 'import tensorflow as tf\n'), (92, 'tensorflow.device', 'tf.device', (["('/gpu:%d' % i)"], {}), True, 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'tensorflow.summary.image', 'tf.summary.image', (["('Compare/gtboxes_h_gpu:%d' % i)", 'gtboxes_in_img_h'], {}), True, 'import tensorflow as tf\n'), (155, 'tensorflow.summary.image', 'tf.summary.image', (["('Compare/gtboxes_r_gpu:%d' % i)", 'gtboxes_in_img_r'], {}), True, 'import tensorflow as tf\n'), (176, 'tensorflow.get_variable_scope', 'tf.get_variable_scope', ([], {}), True, 'import tensorflow as tf\n'), (113, 'tensorflow.py_func', 'tf.py_func', (['coordinate_present_convert'], {'inp': '[gtboxes_and_label_r, -1]', 'Tout': 'tf.float32'}), True, 'import tensorflow as tf\n'), (116, 'tensorflow.reshape', 'tf.reshape', (['gtboxes_and_label_r_', '[-1, 6]'], {}), True, 'import tensorflow as tf\n'), (118, 'tensorflow.py_func', 'tf.py_func', (['angle_label_encode'], {'inp': '[gtboxes_and_label_r_[:, (-2)], cfgs.ANGLE_RANGE, cfgs.OMEGA, cfgs.ANGLE_MODE]', 'Tout': 'tf.float32'}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.py_func', 'tf.py_func', (['angle_label_encode'], {'inp': '[gtboxes_and_label_r[:, (-2)], cfgs.ANGLE_RANGE, cfgs.OMEGA, cfgs.ANGLE_MODE]', 'Tout': 'tf.float32'}), True, 'import tensorflow as tf\n'), (165, 'tensorflow.summary.image', 'tf.summary.image', (["('Compare/final_detection_gpu:%d' % i)", 'detections_in_img'], {}), True, 'import tensorflow as tf\n'), (171, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.REGULARIZATION_LOSSES'], {}), True, 'import tensorflow as tf\n'), (102, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(0.0)'], {}), True, 'import tensorflow as tf\n'), (133, 'tensorflow.cast', 'tf.cast', (['img_shape[0]', 'tf.int32'], {}), True, 'import tensorflow as tf\n'), (134, 'tensorflow.cast', 'tf.cast', (['img_shape[1]', 'tf.int32'], {}), True, 'import tensorflow as tf\n'), (174, 'tensorflow.add_n', 'tf.add_n', (['regularization_losses'], {}), True, 'import tensorflow as tf\n')] |
nikhilsu/Mixed-modal-learning | 4e18877cd010665324d46885530e81226cfc1821 | import tensorflow as tf
import numpy as np
import time
from tensorflow.contrib.rnn import GRUCell
from util.infolog import log
def prenet(inputs, is_training, layer_sizes, scope=None):
x = inputs
drop_rate = 0.5 if is_training else 0.0
with tf.variable_scope(scope or 'prenet'):
for i, size in enumerate(layer_sizes):
dense = tf.layers.dense(x, units=size, activation=tf.nn.relu, name='dense_%d' % (i + 1))
x = tf.layers.dropout(dense, rate=drop_rate, training=is_training, name='dropout_%d' % (i + 1))
return x
def encoder_cbhg(inputs, input_lengths, is_training, depth):
input_channels = inputs.get_shape()[2]
return cbhg(
inputs,
input_lengths,
is_training,
scope='encoder_cbhg',
K=16,
projections=[128, input_channels],
depth=depth)
def post_cbhg(inputs, input_dim, is_training, depth):
return cbhg(
inputs,
None,
is_training,
scope='post_cbhg',
K=8,
projections=[256, input_dim],
depth=depth)
def cbhg(inputs, input_lengths, is_training, scope, K, projections, depth):
with tf.variable_scope(scope):
with tf.variable_scope('conv_bank'):
# Convolution bank: concatenate on the last axis to stack channels from all convolutions
conv_outputs = tf.concat(
[conv1d(inputs, k, 128, tf.nn.relu, is_training, 'conv1d_%d' % k) for k in range(1, K + 1)],
axis=-1
)
# Maxpooling:
maxpool_output = tf.layers.max_pooling1d(
conv_outputs,
pool_size=2,
strides=1,
padding='same')
# Two projection layers:
proj1_output = conv1d(maxpool_output, 3, projections[0], tf.nn.relu, is_training, 'proj_1')
proj2_output = conv1d(proj1_output, 3, projections[1], None, is_training, 'proj_2')
# Residual connection:
highway_input = proj2_output + inputs
half_depth = depth // 2
assert half_depth * 2 == depth, 'encoder and postnet depths must be even.'
# Handle dimensionality mismatch:
if highway_input.shape[2] != half_depth:
highway_input = tf.layers.dense(highway_input, half_depth)
# 4-layer HighwayNet:
for i in range(4):
highway_input = highwaynet(highway_input, 'highway_%d' % (i + 1), half_depth)
rnn_input = highway_input
# Bidirectional RNN
outputs, states = tf.nn.bidirectional_dynamic_rnn(
GRUCell(half_depth),
GRUCell(half_depth),
rnn_input,
sequence_length=input_lengths,
dtype=tf.float32)
return tf.concat(outputs, axis=2) # Concat forward and backward
def highwaynet(inputs, scope, depth):
with tf.variable_scope(scope):
H = tf.layers.dense(
inputs,
units=depth,
activation=tf.nn.relu,
name='H')
T = tf.layers.dense(
inputs,
units=depth,
activation=tf.nn.sigmoid,
name='T',
bias_initializer=tf.constant_initializer(-1.0))
return H * T + inputs * (1.0 - T)
def conv1d(inputs, kernel_size, channels, activation, is_training, scope):
with tf.variable_scope(scope):
conv1d_output = tf.layers.conv1d(
inputs,
filters=channels,
kernel_size=kernel_size,
activation=activation,
padding='same')
return tf.layers.batch_normalization(conv1d_output, training=is_training)
VGG_MEAN = [103.939, 116.779, 123.68]
# noinspection PyMethodMayBeStatic
class Vgg19:
def __init__(self, vgg19_npy_path):
self.data_dict = np.load(vgg19_npy_path, encoding='latin1').item()
def build(self, rgb):
"""
load variable from npy to build the VGG
:param rgb: rgb image [batch, height, width, 3] values scaled [0, 1]
"""
start_time = time.time()
log('Building VGG19. Started at: %ds' % start_time)
rgb_scaled = rgb * 255.0
# Convert RGB to BGR
red, green, blue = tf.split(axis=3, num_or_size_splits=3, value=rgb_scaled)
assert red.get_shape().as_list()[1:] == [224, 224, 1]
assert green.get_shape().as_list()[1:] == [224, 224, 1]
assert blue.get_shape().as_list()[1:] == [224, 224, 1]
bgr = tf.concat(axis=3, values=[
blue - VGG_MEAN[0],
green - VGG_MEAN[1],
red - VGG_MEAN[2],
])
assert bgr.get_shape().as_list()[1:] == [224, 224, 3]
self.conv1_1 = self.conv_layer(bgr, "conv1_1")
self.conv1_2 = self.conv_layer(self.conv1_1, "conv1_2")
self.pool1 = self.max_pool(self.conv1_2, 'pool1')
self.conv2_1 = self.conv_layer(self.pool1, "conv2_1")
self.conv2_2 = self.conv_layer(self.conv2_1, "conv2_2")
self.pool2 = self.max_pool(self.conv2_2, 'pool2')
self.conv3_1 = self.conv_layer(self.pool2, "conv3_1")
self.conv3_2 = self.conv_layer(self.conv3_1, "conv3_2")
self.conv3_3 = self.conv_layer(self.conv3_2, "conv3_3")
self.conv3_4 = self.conv_layer(self.conv3_3, "conv3_4")
self.pool3 = self.max_pool(self.conv3_4, 'pool3')
self.conv4_1 = self.conv_layer(self.pool3, "conv4_1")
self.conv4_2 = self.conv_layer(self.conv4_1, "conv4_2")
self.conv4_3 = self.conv_layer(self.conv4_2, "conv4_3")
self.conv4_4 = self.conv_layer(self.conv4_3, "conv4_4")
self.pool4 = self.max_pool(self.conv4_4, 'pool4')
self.conv5_1 = self.conv_layer(self.pool4, "conv5_1")
self.conv5_2 = self.conv_layer(self.conv5_1, "conv5_2")
self.conv5_3 = self.conv_layer(self.conv5_2, "conv5_3")
self.conv5_4 = self.conv_layer(self.conv5_3, "conv5_4")
self.pool5 = self.max_pool(self.conv5_4, 'pool5')
self.fc6 = self.fc_layer(self.pool5, "fc6")
assert self.fc6.get_shape().as_list()[1:] == [4096]
self.relu6 = tf.nn.relu(self.fc6)
self.fc7 = self.fc_layer(self.relu6, "fc7")
self.relu7 = tf.nn.relu(self.fc7)
self.fc8 = self.fc_layer(self.relu7, "fc8")
log("finished building VGG19 in %ds" % (time.time() - start_time))
return self.fc8
def avg_pool(self, bottom, name):
return tf.nn.avg_pool(bottom, ksize=[1, 2, 2, 1], strides=[1, 2, 2, 1], padding='SAME', name=name)
def max_pool(self, bottom, name):
return tf.nn.max_pool(bottom, ksize=[1, 2, 2, 1], strides=[1, 2, 2, 1], padding='SAME', name=name)
def conv_layer(self, bottom, name):
with tf.variable_scope(name):
filt = self.get_conv_filter(name)
conv = tf.nn.conv2d(bottom, filt, [1, 1, 1, 1], padding='SAME')
conv_biases = self.get_bias(name)
bias = tf.nn.bias_add(conv, conv_biases)
relu = tf.nn.relu(bias)
return relu
def fc_layer(self, bottom, name):
with tf.variable_scope(name):
shape = bottom.get_shape().as_list()
dim = 1
for d in shape[1:]:
dim *= d
x = tf.reshape(bottom, [-1, dim])
weights = self.get_fc_weight(name)
biases = self.get_bias(name)
# Fully connected layer. Note that the '+' operation automatically
# broadcasts the biases.
fc = tf.nn.bias_add(tf.matmul(x, weights), biases)
return fc
def get_conv_filter(self, name):
return tf.constant(self.data_dict[name][0], name="filter")
def get_bias(self, name):
return tf.constant(self.data_dict[name][1], name="biases")
def get_fc_weight(self, name):
return tf.constant(self.data_dict[name][0], name="weights")
def vgg19_pretrained_last_fc(rgb_input, model_path):
return Vgg19(model_path).build(rgb_input)
| [
"tensorflow.layers.conv1d",
"tensorflow.concat",
"tensorflow.contrib.rnn.GRUCell",
"tensorflow.nn.max_pool",
"tensorflow.layers.dropout",
"tensorflow.nn.conv2d",
"tensorflow.layers.max_pooling1d",
"tensorflow.layers.batch_normalization",
"tensorflow.layers.dense",
"numpy.load",
"tensorflow.matmul",
"tensorflow.nn.avg_pool",
"tensorflow.split",
"tensorflow.nn.bias_add",
"tensorflow.nn.relu",
"tensorflow.constant",
"tensorflow.reshape",
"tensorflow.constant_initializer",
"tensorflow.variable_scope"
] | models/modules.py | [(12, 'tensorflow.variable_scope', 'tf.variable_scope', (["(scope or 'prenet')"], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.variable_scope', 'tf.variable_scope', (['scope'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.layers.max_pooling1d', 'tf.layers.max_pooling1d', (['conv_outputs'], {'pool_size': '(2)', 'strides': '(1)', 'padding': '"""same"""'}), True, 'import tensorflow as tf\n'), (84, 'tensorflow.concat', 'tf.concat', (['outputs'], {'axis': '(2)'}), True, 'import tensorflow as tf\n'), (88, 'tensorflow.variable_scope', 'tf.variable_scope', (['scope'], {}), True, 'import tensorflow as tf\n'), (89, 'tensorflow.layers.dense', 'tf.layers.dense', (['inputs'], {'units': 'depth', 'activation': 'tf.nn.relu', 'name': '"""H"""'}), True, 'import tensorflow as tf\n'), (104, 'tensorflow.variable_scope', 'tf.variable_scope', (['scope'], {}), True, 'import tensorflow as tf\n'), (105, 'tensorflow.layers.conv1d', 'tf.layers.conv1d', (['inputs'], {'filters': 'channels', 'kernel_size': 'kernel_size', 'activation': 'activation', 'padding': '"""same"""'}), True, 'import tensorflow as tf\n'), (111, 'tensorflow.layers.batch_normalization', 'tf.layers.batch_normalization', (['conv1d_output'], {'training': 'is_training'}), True, 'import tensorflow as tf\n'), (128, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (129, 'util.infolog.log', 'log', (["('Building VGG19. Started at: %ds' % start_time)"], {}), False, 'from util.infolog import log\n'), (133, 'tensorflow.split', 'tf.split', ([], {'axis': '(3)', 'num_or_size_splits': '(3)', 'value': 'rgb_scaled'}), True, 'import tensorflow as tf\n'), (137, 'tensorflow.concat', 'tf.concat', ([], {'axis': '(3)', 'values': '[blue - VGG_MEAN[0], green - VGG_MEAN[1], red - VGG_MEAN[2]]'}), True, 'import tensorflow as tf\n'), (172, 'tensorflow.nn.relu', 'tf.nn.relu', (['self.fc6'], {}), True, 'import tensorflow as tf\n'), (175, 'tensorflow.nn.relu', 'tf.nn.relu', (['self.fc7'], {}), True, 'import tensorflow as tf\n'), (184, 'tensorflow.nn.avg_pool', 'tf.nn.avg_pool', (['bottom'], {'ksize': '[1, 2, 2, 1]', 'strides': '[1, 2, 2, 1]', 'padding': '"""SAME"""', 'name': 'name'}), True, 'import tensorflow as tf\n'), (187, 'tensorflow.nn.max_pool', 'tf.nn.max_pool', (['bottom'], {'ksize': '[1, 2, 2, 1]', 'strides': '[1, 2, 2, 1]', 'padding': '"""SAME"""', 'name': 'name'}), True, 'import tensorflow as tf\n'), (219, 'tensorflow.constant', 'tf.constant', (['self.data_dict[name][0]'], {'name': '"""filter"""'}), True, 'import tensorflow as tf\n'), (222, 'tensorflow.constant', 'tf.constant', (['self.data_dict[name][1]'], {'name': '"""biases"""'}), True, 'import tensorflow as tf\n'), (225, 'tensorflow.constant', 'tf.constant', (['self.data_dict[name][0]'], {'name': '"""weights"""'}), True, 'import tensorflow as tf\n'), (14, 'tensorflow.layers.dense', 'tf.layers.dense', (['x'], {'units': 'size', 'activation': 'tf.nn.relu', 'name': "('dense_%d' % (i + 1))"}), True, 'import tensorflow as tf\n'), (15, 'tensorflow.layers.dropout', 'tf.layers.dropout', (['dense'], {'rate': 'drop_rate', 'training': 'is_training', 'name': "('dropout_%d' % (i + 1))"}), True, 'import tensorflow as tf\n'), (44, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""conv_bank"""'], {}), True, 'import tensorflow as tf\n'), (70, 'tensorflow.layers.dense', 'tf.layers.dense', (['highway_input', 'half_depth'], {}), True, 'import tensorflow as tf\n'), (79, 'tensorflow.contrib.rnn.GRUCell', 'GRUCell', (['half_depth'], {}), False, 'from tensorflow.contrib.rnn import GRUCell\n'), (80, 'tensorflow.contrib.rnn.GRUCell', 'GRUCell', (['half_depth'], {}), False, 'from tensorflow.contrib.rnn import GRUCell\n'), (190, 'tensorflow.variable_scope', 'tf.variable_scope', (['name'], {}), True, 'import tensorflow as tf\n'), (193, 'tensorflow.nn.conv2d', 'tf.nn.conv2d', (['bottom', 'filt', '[1, 1, 1, 1]'], {'padding': '"""SAME"""'}), True, 'import tensorflow as tf\n'), (196, 'tensorflow.nn.bias_add', 'tf.nn.bias_add', (['conv', 'conv_biases'], {}), True, 'import tensorflow as tf\n'), (198, 'tensorflow.nn.relu', 'tf.nn.relu', (['bias'], {}), True, 'import tensorflow as tf\n'), (202, 'tensorflow.variable_scope', 'tf.variable_scope', (['name'], {}), True, 'import tensorflow as tf\n'), (207, 'tensorflow.reshape', 'tf.reshape', (['bottom', '[-1, dim]'], {}), True, 'import tensorflow as tf\n'), (99, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(-1.0)'], {}), True, 'import tensorflow as tf\n'), (120, 'numpy.load', 'np.load', (['vgg19_npy_path'], {'encoding': '"""latin1"""'}), True, 'import numpy as np\n'), (214, 'tensorflow.matmul', 'tf.matmul', (['x', 'weights'], {}), True, 'import tensorflow as tf\n'), (179, 'time.time', 'time.time', ([], {}), False, 'import time\n')] |
jtraviesor/alfred-tf-trainer | 9747d24bef418415a31abfe0c9982d2f1d9d8298 | from tensorflow.python.platform import gfile
from tensorflow.contrib.learn.python.learn.preprocessing.text import CategoricalVocabulary
import re
import numpy as np
try:
import cPickle as pickle
except ImportError:
import pickle
TOKENIZER_RE = re.compile(r"[A-Z]{2,}(?![a-z])|[A-Z][a-z]+(?=[A-Z])|[\'\w\-]+",
re.UNICODE)
def tokenizer(iterator):
"""Tokenizer generator.
Args:
iterator: Input iterator with strings.
Yields:
array of tokens per each value in the input.
"""
for value in iterator:
yield TOKENIZER_RE.findall(value)
class VocabularyProcessor(object):
"""Maps documents to sequences of word ids."""
def __init__(self,
min_frequency=0,
vocabulary=None,
tokenizer_fn=None):
"""Initializes a VocabularyProcessor instance.
Args:
max_document_length: Maximum length of documents.
if documents are longer, they will be trimmed, if shorter - padded.
min_frequency: Minimum frequency of words in the vocabulary.
vocabulary: CategoricalVocabulary object.
Attributes:
vocabulary_: CategoricalVocabulary object.
"""
self.min_frequency = min_frequency
if vocabulary:
self.vocabulary_ = vocabulary
else:
self.vocabulary_ = CategoricalVocabulary(support_reverse=True)
if tokenizer_fn:
self._tokenizer = tokenizer_fn
else:
self._tokenizer = tokenizer
def fit(self, raw_documents, unused_y=None):
"""Learn a vocabulary dictionary of all tokens in the raw documents.
Args:
raw_documents: An iterable which yield either str or unicode.
unused_y: to match fit format signature of estimators.
Returns:
self
"""
for tokens in self._tokenizer(raw_documents):
for token in tokens:
self.vocabulary_.add(token)
if self.min_frequency > 0:
self.vocabulary_.trim(self.min_frequency)
self.vocabulary_.freeze()
return self
def fit_transform(self, raw_documents, unused_y=None):
"""Learn the vocabulary dictionary and return indexies of words.
Args:
raw_documents: An iterable which yield either str or unicode.
unused_y: to match fit_transform signature of estimators.
Returns:
x: iterable, [n_samples, max_document_length]. Word-id matrix.
"""
self.fit(raw_documents)
return self.transform(raw_documents)
def transform(self, raw_documents):
"""Transform documents to word-id matrix.
Convert words to ids with vocabulary fitted with fit or the one
provided in the constructor.
Args:
raw_documents: An iterable which yield either str or unicode.
Yields:
x: iterable, [n_samples, max_document_length]. Word-id matrix.
"""
for tokens in self._tokenizer(raw_documents):
word_ids = np.zeros(len(tokens), np.int64)
for idx, token in enumerate(tokens):
word_ids[idx] = self.vocabulary_.get(token)
yield word_ids
def reverse(self, documents):
"""Reverses output of vocabulary mapping to words.
Args:
documents: iterable, list of class ids.
Yields:
Iterator over mapped in words documents.
"""
for item in documents:
output = []
for class_id in item:
output.append(self.vocabulary_.reverse(class_id))
yield ' '.join(output)
def save(self, filename):
"""Saves vocabulary processor into given file.
Args:
filename: Path to output file.
"""
with gfile.Open(filename, 'wb') as f:
f.write(pickle.dumps(self))
@classmethod
def restore(cls, filename):
"""Restores vocabulary processor from given file.
Args:
filename: Path to file to load from.
Returns:
VocabularyProcessor object.
"""
with gfile.Open(filename, 'rb') as f:
return pickle.loads(f.read()) | [
"tensorflow.contrib.learn.python.learn.preprocessing.text.CategoricalVocabulary",
"tensorflow.python.platform.gfile.Open"
] | similarity/preprocessing.py | [(12, 're.compile', 're.compile', (['"""[A-Z]{2,}(?![a-z])|[A-Z][a-z]+(?=[A-Z])|[\\\\\'\\\\w\\\\-]+"""', 're.UNICODE'], {}), False, 'import re\n'), (45, 'tensorflow.contrib.learn.python.learn.preprocessing.text.CategoricalVocabulary', 'CategoricalVocabulary', ([], {'support_reverse': '(True)'}), False, 'from tensorflow.contrib.learn.python.learn.preprocessing.text import CategoricalVocabulary\n'), (111, 'tensorflow.python.platform.gfile.Open', 'gfile.Open', (['filename', '"""wb"""'], {}), False, 'from tensorflow.python.platform import gfile\n'), (122, 'tensorflow.python.platform.gfile.Open', 'gfile.Open', (['filename', '"""rb"""'], {}), False, 'from tensorflow.python.platform import gfile\n'), (112, 'pickle.dumps', 'pickle.dumps', (['self'], {}), False, 'import pickle\n')] |
subex/Tefla | 34f8fd0e2f2ee02aa73c6289753e08a95cc41880 | # -------------------------------------------------------------------#
# Written by Mrinal Haloi
# Contact: [email protected]
# Copyright 2017, Mrinal Haloi
# -------------------------------------------------------------------#
from __future__ import division, print_function, absolute_import
import os
import time
import cv2
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import control_flow_ops
from . import logger as log
from . import summary as summary
from .base import Base
from ..utils import util
TRAINING_BATCH_SUMMARIES = 'training_batch_summaries'
TRAINING_EPOCH_SUMMARIES = 'training_epoch_summaries'
VALIDATION_BATCH_SUMMARIES = 'validation_batch_summaries'
VALIDATION_EPOCH_SUMMARIES = 'validation_epoch_summaries'
class SemiSupervisedTrainer(Base):
"""Semi Supervised Trainer.
Args:
model: model definition
cnf: dict, training configs
training_iterator: iterator to use for training data access, processing and augmentations
validation_iterator: iterator to use for validation data access, processing and augmentations
start_epoch: int, training start epoch; for resuming training provide the last
epoch number to resume training from, its a required parameter for training data balancing
resume_lr: float, learning rate to use for new training
classification: bool, classificattion or regression
clip_norm: bool, to clip gradient using gradient norm, stabilizes the training
n_iters_per_epoch: int, number of iteratiosn for each epoch;
e.g: total_training_samples/batch_size
gpu_memory_fraction: amount of gpu memory to use
is_summary: bool, to write summary or not
"""
def __init__(self, model, cnf, clip_by_global_norm=False, **kwargs):
self.clip_by_global_norm = clip_by_global_norm
super(SemiSupervisedTrainer, self).__init__(model, cnf, **kwargs)
def fit(self,
data_set,
num_classes=6,
weights_from=None,
start_epoch=1,
summary_every=199,
model_name='multiclass_ss',
weights_dir='weights'):
"""Train the model on the specified dataset.
Args:
data_set: dataset instance to use to access data for training/validation
weights_from: str, if not None, initializes model from exisiting weights
start_epoch: int, epoch number to start training from
e.g. for retarining set the epoch number you want to resume training from
summary_every: int, epoch interval to write summary; higher value means lower frequency
of summary writing
"""
with tf.Graph().as_default(), tf.device('/gpu:0'):
self._setup_model_loss(num_classes=num_classes)
if self.is_summary:
self._setup_summaries(self.capped_d_grads, self.capped_g_grads)
self._setup_misc()
self._print_info(data_set)
self._train_semi_supervised(data_set, start_epoch, weights_from, summary_every, model_name,
weights_dir)
def _train_semi_supervised(self, dataset, start_epoch, weights_from, summary_every, model_name,
weights_dir):
training_X, training_y, validation_X, validation_y = \
dataset.training_X, dataset.training_y, dataset.validation_X, dataset.validation_y
if not os.path.exists(weights_dir):
os.mkdir(weights_dir)
if not os.path.exists(weights_dir + '/best_models'):
os.mkdir(weights_dir + '/best_models')
# Create a saver.
saver = tf.train.Saver(max_to_keep=None)
if self.is_summary:
training_batch_summary_op = tf.merge_all_summaries(key=TRAINING_BATCH_SUMMARIES)
training_epoch_summary_op = tf.merge_all_summaries(key=TRAINING_EPOCH_SUMMARIES)
validation_batch_summary_op = tf.merge_all_summaries(key=VALIDATION_BATCH_SUMMARIES)
validation_epoch_summary_op = tf.merge_all_summaries(key=VALIDATION_EPOCH_SUMMARIES)
# Build an initialization operation to run below.
init = tf.global_variables_initializer()
gpu_options = tf.GPUOptions(
per_process_gpu_memory_fraction=self.cnf.get('gpu_memory_fraction', 0.9))
sess = tf.Session(config=tf.ConfigProto(allow_soft_placement=True, gpu_options=gpu_options))
sess.run(init)
if start_epoch > 1:
weights_from = "weights/model-epoch-%d.ckpt" % (start_epoch - 1)
if weights_from:
self._load_weights(sess, saver, weights_from)
learning_rate_value = self.lr_policy.initial_lr
log.info("Initial learning rate: %f " % learning_rate_value)
if self.is_summary:
train_writer, validation_writer = summary.create_summary_writer(
self.cnf.get('summary_dir', '/tmp/tefla-summary'), sess)
# keep track of maximum accuracy and auroc and save corresponding
# weights
training_history = []
seed_delta = 100
batch_iter_idx = 1
n_iters_per_epoch = len(dataset.training_X) // self.training_iterator.batch_size
self.lr_policy.n_iters_per_epoch = n_iters_per_epoch
for epoch in range(start_epoch, self.cnf.get('mum_epochs', 550) + 1):
np.random.seed(epoch + seed_delta)
tf.set_random_seed(epoch + seed_delta)
tic = time.time()
d_train_losses = []
g_train_losses = []
batch_train_sizes = []
for batch_num, (Xb, yb) in enumerate(self.training_iterator(training_X, training_y)):
if Xb.shape[0] < self.cnf['batch_size_train']:
continue
feed_dict_train = {
self.inputs: Xb,
self.labels: yb,
self.learning_rate_d: learning_rate_value,
self.learning_rate_g: learning_rate_value
}
log.debug('1. Loading batch %d data done.' % batch_num)
if epoch % summary_every == 0 and self.is_summary:
log.debug('2. Running training steps with summary...')
_, _d_loss_real, _d_loss_fake, _d_loss_class, summary_str_train = sess.run(
[
self.train_op_d, self.d_loss_real, self.d_loss_fake, self.d_loss_class,
training_batch_summary_op
],
feed_dict=feed_dict_train)
_, _g_loss = sess.run([self.train_op_g, self.g_losses[0]], feed_dict=feed_dict_train)
train_writer.add_summary(summary_str_train, epoch)
train_writer.flush()
log.debug('2. Running training steps with summary done.')
log.info("Epoch %d, Batch %d D_loss_real: %s, D_loss_fake: %s,D_loss_class: %s, G_loss: %s"
% (epoch, batch_num, _d_loss_real, _d_loss_fake, _d_loss_class, _g_loss))
else:
log.debug('2. Running training steps without summary...')
_, _d_loss_real, _d_loss_fake, _d_loss_class = sess.run(
[self.train_op_d, self.d_loss_real, self.d_loss_fake, self.d_loss_class],
feed_dict=feed_dict_train)
_, _g_loss = sess.run([self.train_op_g, self.g_losses[0]], feed_dict=feed_dict_train)
log.debug('2. Running training steps without summary done.')
d_train_losses.append(_d_loss_real + _d_loss_fake + _d_loss_class)
g_train_losses.append(_g_loss)
batch_train_sizes.append(len(Xb))
learning_rate_value = self.lr_policy.batch_update(learning_rate_value, batch_iter_idx)
batch_iter_idx += 1
log.debug('4. Training batch %d done.' % batch_num)
d_avg_loss = np.average(d_train_losses, weights=batch_train_sizes)
g_avg_loss = np.average(g_train_losses, weights=batch_train_sizes)
log.info("Epoch %d, D_avg_loss: %s, G_avg_loss %s" % (epoch, d_avg_loss, g_avg_loss))
# Plot training loss every epoch
log.debug('5. Writing epoch summary...')
if self.is_summary:
summary_str_train = sess.run(
training_epoch_summary_op,
feed_dict={
self.epoch_loss: d_avg_loss,
self.epoch_loss_g: g_avg_loss,
self.learning_rate_d: learning_rate_value,
self.learning_rate_g: learning_rate_value
})
train_writer.add_summary(summary_str_train, epoch)
train_writer.flush()
log.debug('5. Writing epoch summary done.')
# Validation prediction and metrics
validation_losses = []
batch_validation_metrics = [[] for _, _ in self.validation_metrics_def]
epoch_validation_metrics = []
batch_validation_sizes = []
for batch_num, (validation_Xb, validation_y_true) in enumerate(
self.validation_iterator(validation_X, validation_y)):
feed_dict_val = {self.inputs: validation_Xb, self.labels: validation_y_true}
log.debug('6. Loading batch %d validation data done.' % batch_num)
if (epoch - 1) % summary_every == 0 and self.is_summary:
log.debug('7. Running validation steps with summary...')
validation_y_pred, _val_loss, summary_str_validation = sess.run(
[self.predictions, self.test_loss, validation_batch_summary_op],
feed_dict=feed_dict_val)
validation_writer.add_summary(summary_str_validation, epoch)
validation_writer.flush()
log.debug('7. Running validation steps with summary done.')
log.debug("Epoch %d, Batch %d validation loss: %s" % (epoch, batch_num, _val_loss))
log.debug("Epoch %d, Batch %d validation predictions: %s" % (epoch, batch_num,
validation_y_pred))
else:
log.debug('7. Running validation steps without summary...')
validation_y_pred, _val_loss = sess.run([self.predictions, self.test_loss],
feed_dict=feed_dict_val)
log.debug('7. Running validation steps without summary done.')
validation_losses.append(_val_loss)
batch_validation_sizes.append(len(validation_Xb))
for i, (_, metric_function) in enumerate(self.validation_metrics_def):
metric_score = metric_function(validation_y_true, validation_y_pred)
batch_validation_metrics[i].append(metric_score)
log.debug('8. Validation batch %d done' % batch_num)
epoch_validation_loss = np.average(validation_losses, weights=batch_validation_sizes)
for i, (_, _) in enumerate(self.validation_metrics_def):
epoch_validation_metrics.append(
np.average(batch_validation_metrics[i], weights=batch_validation_sizes))
log.debug('9. Writing epoch validation summary...')
if self.is_summary:
summary_str_validate = sess.run(
validation_epoch_summary_op,
feed_dict={
self.epoch_loss: epoch_validation_loss,
self.validation_metric_placeholders: epoch_validation_metrics
})
validation_writer.add_summary(summary_str_validate, epoch)
validation_writer.flush()
log.debug('9. Writing epoch validation summary done.')
custom_metrics_string = [
', %s: %.3f' % (name, epoch_validation_metrics[i])
for i, (name, _) in enumerate(self.validation_metrics_def)
]
custom_metrics_string = ''.join(custom_metrics_string)
log.info("Epoch %d [(%s, %s) images, %6.1fs]: t-loss: %.3f, v-loss: %.3f%s" %
(epoch, np.sum(batch_train_sizes), np.sum(batch_validation_sizes), time.time() - tic,
d_avg_loss, epoch_validation_loss, custom_metrics_string))
epoch_info = dict(epoch=epoch, training_loss=d_avg_loss, validation_loss=epoch_validation_loss)
training_history.append(epoch_info)
saver.save(sess, "%s/model-epoch-%d.ckpt" % (weights_dir, epoch))
learning_rate_value = self.lr_policy.epoch_update(learning_rate_value, training_history)
log.info("Current learning rate: %f " % learning_rate_value)
end_points_G_val = self.model.generator([self.cnf['batch_size_test'], 100],
False,
True,
batch_size=self.cnf['batch_size_test'])
util.save_images(
'generated_images.jpg', sess.run(end_points_G_val['softmax']), width=128, height=128)
G = sess.run(end_points_G_val['softmax'])
cv2.imwrite('generated_image.jpg', G[0, :, :, :] * 50 + 128)
if self.is_summary:
train_writer.close()
validation_writer.close()
def _feature_matching_loss(self, real_data_features, fake_data_features):
real_data_mean = tf.reduce_mean(real_data_features, axis=0)
fake_data_mean = tf.reduce_mean(fake_data_features, axis=0)
feature_loss = tf.reduce_mean(tf.abs(tf.subtract(real_data_mean, fake_data_mean)))
return feature_loss
def _tower_loss_semi_supervised(self, inputs, targets, gpu_idx=0, num_classes=11,
is_fm_loss=False):
with tf.variable_scope("train_specific"):
avg_error_rate = tf.get_variable(
'avg_error_rate', [], initializer=tf.constant_initializer(0.), trainable=False)
num_error_rate = tf.get_variable(
'num_error_rate', [], initializer=tf.constant_initializer(0.), trainable=False)
batch_size_train = self.cnf['batch_size_train']
batch_size_val = self.cnf['batch_size_test']
self.end_points_G = self.model.generator([batch_size_train, 100], True, None, batch_size_val)
if gpu_idx == 0:
G_means = tf.reduce_mean(self.end_points_G['softmax'], 0, keep_dims=True)
G_vars = tf.reduce_mean(tf.square(self.end_points_G['softmax'] - G_means), 0, keep_dims=True)
G = tf.Print(
self.end_points_G['softmax'],
[tf.reduce_mean(G_means), tf.reduce_mean(G_vars)],
"generator mean and average var",
first_n=1)
inputs_means = tf.reduce_mean(inputs, 0, keep_dims=True)
inputs_vars = tf.reduce_mean(tf.square(inputs - inputs_means), 0, keep_dims=True)
inputs = tf.Print(
inputs,
[tf.reduce_mean(inputs_means), tf.reduce_mean(inputs_vars)],
"image mean and average var",
first_n=1)
joint = tf.concat([inputs, G], 0)
log.info('Input size of unlabelled and generated %s' % (joint.get_shape()))
self.end_points_D = self.model.discriminator(
joint, True, None, num_classes=num_classes, batch_size=batch_size_train)
self.end_points_D_val = self.model.discriminator(
inputs, False, True, num_classes=num_classes, batch_size=batch_size_val)
# For printing layers shape
self.training_end_points = self.end_points_D
self.training_end_points.update(self.end_points_G)
tf.summary.histogram("d", self.end_points_D['D_on_data'])
tf.summary.histogram("d_", self.end_points_D['D_on_G'])
tf.summary.image("G", G)
d_label_smooth = self.cnf['d_label_smooth'] # 0.25
self.d_loss_real = self._sigmoid_kl_with_logits(self.end_points_D['D_on_data_logits'],
1. - d_label_smooth)
class_loss_weight = 1.
self.d_loss_class = class_loss_weight * tf.nn.sparse_softmax_cross_entropy_with_logits(
logits=self.end_points_D['class_logits'], labels=tf.to_int64(targets))
self.test_loss = 1. - \
tf.reduce_mean(tf.to_float(tf.nn.in_top_k(
self.end_points_D_val['logits'], targets, 1)))
self.error_rate = 1. - \
tf.reduce_mean(tf.to_float(tf.nn.in_top_k(
self.end_points_D['class_logits'], targets, 1)))
if gpu_idx == 0:
update = tf.assign(num_error_rate, num_error_rate + 1.)
with tf.control_dependencies([update]):
tc = tf.maximum(.01, 1. / num_error_rate)
update = tf.assign(avg_error_rate, (1. - tc) * avg_error_rate + tc * self.error_rate)
with tf.control_dependencies([update]):
self.d_loss_class = tf.identity(self.d_loss_class)
self.d_loss_fake = tf.nn.sigmoid_cross_entropy_with_logits(
logits=self.end_points_D['D_on_G_logits'],
labels=tf.zeros_like(self.end_points_D['D_on_G_logits']))
self.d_loss_class = tf.reduce_mean(self.d_loss_class)
self.d_loss_real = tf.reduce_mean(self.d_loss_real)
self.d_loss_fake = tf.reduce_mean(self.d_loss_fake)
if is_fm_loss:
global_pool_head = self.end_points_D['global_pool']
real_data_features = tf.slice(global_pool_head, [0, 0], [batch_size_train, num_classes])
fake_data_features = tf.slice(global_pool_head, [batch_size_train, 0],
[batch_size_train, num_classes])
self.g_loss = self._feature_matching_loss(real_data_features, fake_data_features)
else:
generator_target_prob = self.cnf['generator_target_prob'] # 0.75 / 2.0
self.g_loss = self._sigmoid_kl_with_logits(self.end_points_D['D_on_G_logits'],
generator_target_prob)
self.g_loss = tf.reduce_mean(self.g_loss)
if gpu_idx == 0:
self.g_losses = []
self.g_losses.append(self.g_loss)
self.d_loss = self.d_loss_real + self.d_loss_fake + self.d_loss_class
if gpu_idx == 0:
self.d_loss_reals = []
self.d_loss_fakes = []
self.d_loss_classes = []
self.d_losses = []
self.d_loss_reals.append(self.d_loss_real)
self.d_loss_fakes.append(self.d_loss_fake)
self.d_loss_classes.append(self.d_loss_class)
self.d_losses.append(self.d_loss)
self.predictions = self.end_points_D_val['predictions']
def _get_vars_semi_supervised(self):
t_vars = tf.trainable_variables()
d_vars = [var for var in t_vars if var.name.startswith('d_')]
g_vars = [var for var in t_vars if var.name.startswith('g_')]
for x in d_vars:
assert x not in g_vars
for x in g_vars:
assert x not in d_vars
for x in t_vars:
assert x in g_vars or x in d_vars
return {'d_vars': d_vars, 'g_vars': g_vars}
def sigmoid_kl_with_logits(self, logits, targets):
""" Sigmoid cross entropy with smooth labels
Args:
logits: logits
targets: smooth targets
Returns:
cross entropy loss
"""
assert isinstance(targets, float)
if targets in [0., 1.]:
entropy = 0.
else:
entropy = - targets * np.log(targets) - \
(1. - targets) * np.log(1. - targets)
return tf.nn.sigmoid_cross_entropy_with_logits(
labels=tf.ones_like(logits) * targets, logits=logits) - entropy
def _setup_model_loss(self, update_ops=None, num_classes=6):
self.learning_rate_d = tf.placeholder(tf.float32, shape=[], name="learning_rate_placeholder")
self.learning_rate_g = tf.placeholder(tf.float32, shape=[], name="learning_rate_placeholder")
d_optimizer = self._optimizer(
self.learning_rate_d,
optname=self.cnf.get('optname', 'momentum'),
**self.cnf.get('opt_kwargs', {'decay': 0.9}))
g_optimizer = self._optimizer(
self.learning_rate_g,
optname=self.cnf.get('optname', 'momentum'),
**self.cnf.get('opt_kwargs', {'decay': 0.9}))
# Get images and labels for ImageNet and split the batch across GPUs.
assert self.cnf['batch_size_train'] % self.cnf.get('num_gpus', 1) == 0, (
'Batch size must be divisible by number of GPUs')
self.inputs = tf.placeholder(
tf.float32,
shape=(None, self.model.image_size[0], self.model.image_size[0], 3),
name="input")
self.labels = tf.placeholder(tf.int32, shape=(None,))
self._tower_loss_semi_supervised(
self.inputs, self.labels, num_classes=num_classes, is_fm_loss=True)
global_update_ops = tf.get_collection(tf.GraphKeys.UPDATE_OPS)
if update_ops is None:
update_ops = global_update_ops
else:
update_ops = set(update_ops)
# Make sure update_ops are computed before total_loss.
if update_ops:
with tf.control_dependencies(update_ops):
barrier = tf.no_op(name='update_barrier')
self.d_losses[-1] = control_flow_ops.with_dependencies([barrier], self.d_losses[-1])
self.g_losses[-1] = control_flow_ops.with_dependencies([barrier], self.g_losses[-1])
self.d_loss_real = control_flow_ops.with_dependencies([barrier], self.d_loss_real)
self.d_loss_fake = control_flow_ops.with_dependencies([barrier], self.d_loss_fake)
self.d_loss_class = control_flow_ops.with_dependencies([barrier], self.d_loss_class)
t_vars = self._get_vars_semi_supervised()
if self.clip_by_global_norm:
self.capped_d_grads = self._clip_grad_global_norms(
t_vars['d_vars'], self.d_losses[-1], d_optimizer, gradient_noise_scale=0.0)
self.capped_g_grads = self._clip_grad_global_norms(
t_vars['g_vars'], self.g_losses[-1], g_optimizer, gradient_noise_scale=0.0)
else:
self.capped_d_grads = self._clip_grad_norms(
d_optimizer.compute_gradients(self.d_losses[-1], t_vars['d_vars']))
self.capped_g_grads = self._clip_grad_norms(
g_optimizer.compute_gradients(self.g_losses[-1], t_vars['g_vars']))
global_step = tf.get_variable(
'global_step', [], initializer=tf.constant_initializer(0), trainable=False)
if self.gradient_multipliers is not None:
with tf.name_scope('multiply_grads'):
self.capped_d_grads = self._multiply_gradients(self.capped_d_grads,
self.gradient_multipliers)
apply_d_gradient_op = d_optimizer.apply_gradients(self.capped_d_grads, global_step=global_step)
apply_g_gradient_op = g_optimizer.apply_gradients(self.capped_g_grads, global_step=global_step)
self.train_op_d = control_flow_ops.with_dependencies([apply_d_gradient_op], self.d_losses[-1])
self.train_op_g = control_flow_ops.with_dependencies([apply_g_gradient_op], self.g_losses[-1])
| [
"tensorflow.device",
"tensorflow.concat",
"tensorflow.control_dependencies",
"tensorflow.to_int64",
"tensorflow.Graph",
"tensorflow.python.ops.control_flow_ops.with_dependencies",
"tensorflow.get_collection",
"tensorflow.summary.image",
"tensorflow.merge_all_summaries",
"tensorflow.subtract",
"tensorflow.ConfigProto",
"tensorflow.name_scope",
"tensorflow.square",
"tensorflow.trainable_variables",
"tensorflow.train.Saver",
"tensorflow.nn.in_top_k",
"numpy.log",
"tensorflow.identity",
"tensorflow.placeholder",
"tensorflow.global_variables_initializer",
"tensorflow.zeros_like",
"tensorflow.no_op",
"tensorflow.set_random_seed",
"numpy.sum",
"tensorflow.summary.histogram",
"numpy.random.seed",
"tensorflow.reduce_mean",
"tensorflow.slice",
"tensorflow.maximum",
"tensorflow.assign",
"tensorflow.ones_like",
"tensorflow.constant_initializer",
"tensorflow.variable_scope",
"numpy.average"
] | tefla/core/learning_ss.py | [(87, 'tensorflow.train.Saver', 'tf.train.Saver', ([], {'max_to_keep': 'None'}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (263, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['real_data_features'], {'axis': '(0)'}), True, 'import tensorflow as tf\n'), (264, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['fake_data_features'], {'axis': '(0)'}), True, 'import tensorflow as tf\n'), (297, 'tensorflow.concat', 'tf.concat', (['[inputs, G]', '(0)'], {}), True, 'import tensorflow as tf\n'), (308, 'tensorflow.summary.histogram', 'tf.summary.histogram', (['"""d"""', "self.end_points_D['D_on_data']"], {}), True, 'import tensorflow as tf\n'), (309, 'tensorflow.summary.histogram', 'tf.summary.histogram', (['"""d_"""', "self.end_points_D['D_on_G']"], {}), True, 'import tensorflow as tf\n'), (310, 'tensorflow.summary.image', 'tf.summary.image', 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oplatek/ndm | d32bd9d685902d9da52b7e7abd286fb5d9c7274a | #!/usr/bin/env python3
import tensorflow as tf
from tfx.bricks import embedding, dense_to_one_hot, linear, dropout, reduce_max, batch_norm_lin, conv2d_bn, \
pow_1, softmax_2d
from model import ModelW2TArgs
class Model(ModelW2TArgs):
def __init__(self, data, FLAGS):
super(Model, self).__init__(data, FLAGS)
conv_mul = 2
histories_embedding_size = 16
histories_vocabulary_length = len(data.idx2word_history)
history_length = data.train_set['histories'].shape[1]
action_templates_vocabulary_length = len(data.idx2word_action_template)
action_templates_embedding_size = 8
num_actions_arguments = data.batch_actions_arguments.shape[2]
actions_arguments_vocabulary_length = len(data.idx2word_action_arguments)
with tf.name_scope('data'):
batch_histories = tf.Variable(data.batch_histories, name='histories',
trainable=False)
batch_actions_template = tf.Variable(data.batch_actions_template, name='actions',
trainable=False)
batch_action_arguments = tf.Variable(data.batch_actions_arguments, name='actions_arguments',
trainable=False)
histories = tf.gather(batch_histories, self.batch_idx)
actions_template = tf.gather(batch_actions_template, self.batch_idx)
actions_arguments = tf.gather(batch_action_arguments, self.batch_idx)
with tf.name_scope('model'):
encoder_embedding = embedding(
input=histories,
length=histories_vocabulary_length,
size=histories_embedding_size,
name='encoder_embedding'
)
with tf.name_scope("UtterancesEncoder"):
conv3 = encoder_embedding
# conv3 = dropout(conv3, pow_1(self.dropout_keep_prob, 2))
conv3 = conv2d_bn(
input=conv3,
filter=[1, 3, conv3.size, conv3.size * conv_mul],
phase_train=self.phase_train,
name='conv_utt_size_3_layer_1'
)
encoded_utterances = reduce_max(conv3, [2], keep_dims=True)
with tf.name_scope("HistoryEncoder"):
conv3 = encoded_utterances
conv3 = dropout(conv3, pow_1(self.dropout_keep_prob, 2))
conv3 = conv2d_bn(
input=conv3,
filter=[3, 1, conv3.size, conv3.size * conv_mul],
phase_train=self.phase_train,
name='conv_hist_size_3_layer_1'
)
conv3 = dropout(conv3, pow_1(self.dropout_keep_prob, 2))
conv3 = conv2d_bn(
input=conv3,
filter=[3, 1, conv3.size, conv3.size * conv_mul],
phase_train=self.phase_train,
name='conv_hist_size_3_layer_2'
)
encoded_history = reduce_max(conv3, [1, 2])
with tf.name_scope("Decoder"):
second_to_last_user_utterance = encoded_utterances[:, history_length - 3, 0, :]
last_system_utterance = encoded_utterances[:, history_length - 2, 0, :]
last_user_utterance = encoded_utterances[:, history_length - 1, 0, :]
dialogue_state = tf.concat(
1,
[
encoded_history,
last_user_utterance,
last_system_utterance,
second_to_last_user_utterance,
],
name='dialogue_state'
)
dialogue_state_size = conv3.size + \
3 * histories_embedding_size * conv_mul
dialogue_state = tf.nn.relu(dialogue_state)
dialogue_state = dropout(dialogue_state, self.dropout_keep_prob)
# action prediction
projection = linear(
input=dialogue_state,
input_size=dialogue_state_size,
output_size=dialogue_state_size,
name='linear_projection_1'
)
projection = batch_norm_lin(projection, dialogue_state_size, self.phase_train,
name='linear_projection_1_bn')
activation = tf.nn.relu(projection)
activation = dropout(activation, self.dropout_keep_prob)
projection = linear(
input=activation,
input_size=dialogue_state_size,
output_size=dialogue_state_size,
name='linear_projection_2'
)
projection = batch_norm_lin(projection, dialogue_state_size, self.phase_train,
name='linear_projection_2_bn')
activation = tf.nn.relu(projection)
activation = dropout(activation, self.dropout_keep_prob)
projection = linear(
input=activation,
input_size=dialogue_state_size,
output_size=action_templates_vocabulary_length,
name='linear_projection_3_predictions_action'
)
self.predictions_action = tf.nn.softmax(projection, name="softmax_output_prediction_action")
# argument prediction
# first encode decoded action template and teh true action template
choice = tf.floor(tf.random_uniform([1], self.use_inputs_prob, 1 + self.use_inputs_prob, tf.float32))
prediction_action_argmax = tf.stop_gradient(tf.argmax(self.predictions_action, 1))
predicted_action_templates_embedding = embedding(
input=prediction_action_argmax,
length=action_templates_vocabulary_length,
size=action_templates_embedding_size,
name='action_templates_embedding'
)
true_action_template_embedding = tf.gather(predicted_action_templates_embedding.embedding_table, actions_template)
predicted_action_templates_embedding = tf.stop_gradient(predicted_action_templates_embedding)
action_templates_embedding = choice * true_action_template_embedding + (1.0 - choice) * predicted_action_templates_embedding
dialogue_state_action_template = tf.concat(
1,
[
dialogue_state,
action_templates_embedding
],
name='dialogue_state_action_template'
)
dialogue_state_action_template_size = (
dialogue_state_size +
action_templates_embedding_size
)
# condition on the dialogue state and the decoded template
projection = linear(
input=dialogue_state_action_template,
input_size=dialogue_state_action_template_size,
output_size=dialogue_state_action_template_size,
name='linear_projection_1_predictions_arguments'
)
projection = batch_norm_lin(projection, dialogue_state_action_template_size, self.phase_train,
name='linear_projection_1_predictions_arguments_bn')
activation = tf.nn.relu(projection)
activation = dropout(activation, self.dropout_keep_prob)
projection = linear(
input=activation,
input_size=dialogue_state_action_template_size,
output_size=dialogue_state_action_template_size,
name='linear_projection_2_predictions_arguments'
)
projection = batch_norm_lin(projection, dialogue_state_action_template_size, self.phase_train,
name='linear_projection_2_predictions_arguments_bn')
activation = tf.nn.relu(projection)
activation = dropout(activation, self.dropout_keep_prob)
projection = linear(
input=activation,
input_size=dialogue_state_action_template_size,
output_size=num_actions_arguments * actions_arguments_vocabulary_length,
name='linear_projection_3_predictions_arguments'
)
self.predictions_arguments = softmax_2d(
input=projection,
n_classifiers=num_actions_arguments,
n_classes=actions_arguments_vocabulary_length,
name="softmax_2d_predictions_arguments")
if FLAGS.print_variables:
for v in tf.trainable_variables():
print(v.name)
with tf.name_scope('loss'):
one_hot_labels_action = dense_to_one_hot(actions_template, action_templates_vocabulary_length)
one_hot_labels_arguments = dense_to_one_hot(actions_arguments, actions_arguments_vocabulary_length)
loss_action = tf.reduce_mean(
- one_hot_labels_action * tf.log(tf.clip_by_value(self.predictions_action, 1e-10, 1.0)),
name='loss'
)
loss_arguments = tf.reduce_mean(
- one_hot_labels_arguments * tf.log(tf.clip_by_value(self.predictions_arguments, 1e-10, 1.0)),
name='loss'
)
self.loss = loss_action + loss_arguments
tf.scalar_summary('loss', self.loss)
with tf.name_scope('accuracy'):
correct_prediction_action = tf.equal(
tf.argmax(one_hot_labels_action, 1),
tf.argmax(self.predictions_action, 1)
)
self.accuracy_action = tf.reduce_mean(tf.cast(correct_prediction_action, 'float'))
tf.scalar_summary('accuracy_action', self.accuracy_action)
correct_prediction_arguments = tf.equal(tf.argmax(one_hot_labels_arguments, 2),
tf.argmax(self.predictions_arguments, 2))
self.accuracy_arguments = tf.reduce_mean(tf.cast(correct_prediction_arguments, 'float'))
tf.scalar_summary('accuracy_arguments', self.accuracy_arguments)
| [
"tensorflow.clip_by_value",
"tensorflow.nn.relu",
"tensorflow.nn.softmax",
"tensorflow.concat",
"tensorflow.Variable",
"tensorflow.scalar_summary",
"tensorflow.cast",
"tensorflow.stop_gradient",
"tensorflow.gather",
"tensorflow.name_scope",
"tensorflow.trainable_variables",
"tensorflow.argmax",
"tensorflow.random_uniform"
] | ndm/model_cnn12_bn_w2targs.py | [(26, 'tensorflow.name_scope', 'tf.name_scope', (['"""data"""'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.Variable', 'tf.Variable', (['data.batch_histories'], {'name': '"""histories"""', 'trainable': '(False)'}), True, 'import tensorflow as tf\n'), (29, 'tensorflow.Variable', 'tf.Variable', (['data.batch_actions_template'], {'name': '"""actions"""', 'trainable': '(False)'}), True, 'import tensorflow as tf\n'), (31, 'tensorflow.Variable', 'tf.Variable', (['data.batch_actions_arguments'], {'name': '"""actions_arguments"""', 'trainable': '(False)'}), True, 'import tensorflow as tf\n'), (34, 'tensorflow.gather', 'tf.gather', (['batch_histories', 'self.batch_idx'], {}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.gather', 'tf.gather', (['batch_actions_template', 'self.batch_idx'], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.gather', 'tf.gather', (['batch_action_arguments', 'self.batch_idx'], {}), True, 'import 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floregol/gae | d5db3f32a8d26001a9b44f7a863a75a61807461f |
import time
import os
# Train on CPU (hide GPU) due to memory constraints
os.environ['CUDA_VISIBLE_DEVICES'] = ""
import tensorflow as tf
import numpy as np
import scipy.sparse as sp
from sklearn.metrics import roc_auc_score
from sklearn.metrics import average_precision_score
from optimizer import OptimizerAE, OptimizerVAE
from input_data import load_data
from model import GCNModelAE, GCNModelVAE
from preprocessing import preprocess_graph, construct_feed_dict, sparse_to_tuple, mask_test_edges
# Settings
flags = tf.app.flags
FLAGS = flags.FLAGS
flags.DEFINE_float('learning_rate', 0.01, 'Initial learning rate.')
flags.DEFINE_integer('epochs', 200, 'Number of epochs to train.')
flags.DEFINE_integer('hidden1', 32, 'Number of units in hidden layer 1.')
flags.DEFINE_integer('hidden2', 16, 'Number of units in hidden layer 2.')
flags.DEFINE_float('weight_decay', 0., 'Weight for L2 loss on embedding matrix.')
flags.DEFINE_float('dropout', 0., 'Dropout rate (1 - keep probability).')
flags.DEFINE_string('model', 'gcn_vae', 'Model string.')
flags.DEFINE_string('dataset', 'cora', 'Dataset string.')
flags.DEFINE_integer('features', 1, 'Whether to use features (1) or not (0).')
model_str = FLAGS.model
dataset_str = FLAGS.dataset
# Load data
adj, features = load_data(dataset_str)
# Store original adjacency matrix (without diagonal entries) for later
adj_orig = adj
adj_orig = adj_orig - sp.dia_matrix((adj_orig.diagonal()[np.newaxis, :], [0]), shape=adj_orig.shape)
adj_orig.eliminate_zeros()
adj_train, train_edges, val_edges, val_edges_false, test_edges, test_edges_false = mask_test_edges(adj)
adj = adj_train
if FLAGS.features == 0:
features = sp.identity(features.shape[0]) # featureless
# Some preprocessing
adj_norm = preprocess_graph(adj)
# Define placeholders
placeholders = {
'features': tf.sparse_placeholder(tf.float32),
'adj': tf.sparse_placeholder(tf.float32),
'adj_orig': tf.sparse_placeholder(tf.float32),
'dropout': tf.placeholder_with_default(0., shape=())
}
num_nodes = adj.shape[0]
features = sparse_to_tuple(features.tocoo())
num_features = features[2][1]
features_nonzero = features[1].shape[0]
# Create model
model = None
if model_str == 'gcn_ae':
model = GCNModelAE(placeholders, num_features, features_nonzero)
elif model_str == 'gcn_vae':
model = GCNModelVAE(placeholders, num_features, num_nodes, features_nonzero)
pos_weight = float(adj.shape[0] * adj.shape[0] - adj.sum()) / adj.sum()
norm = adj.shape[0] * adj.shape[0] / float((adj.shape[0] * adj.shape[0] - adj.sum()) * 2)
# Optimizer
with tf.name_scope('optimizer'):
if model_str == 'gcn_ae':
opt = OptimizerAE(preds=model.reconstructions,
labels=tf.reshape(tf.sparse_tensor_to_dense(placeholders['adj_orig'],
validate_indices=False), [-1]),
pos_weight=pos_weight,
norm=norm)
elif model_str == 'gcn_vae':
opt = OptimizerVAE(preds=model.reconstructions,
labels=tf.reshape(tf.sparse_tensor_to_dense(placeholders['adj_orig'],
validate_indices=False), [-1]),
model=model, num_nodes=num_nodes,
pos_weight=pos_weight,
norm=norm)
# Initialize session
sess = tf.Session()
sess.run(tf.global_variables_initializer())
cost_val = []
acc_val = []
def get_roc_score(edges_pos, edges_neg, emb=None):
if emb is None:
feed_dict.update({placeholders['dropout']: 0})
emb = sess.run(model.z_mean, feed_dict=feed_dict)
def sigmoid(x):
return 1 / (1 + np.exp(-x))
# Predict on test set of edges
adj_rec = np.dot(emb, emb.T)
preds = []
pos = []
for e in edges_pos:
preds.append(sigmoid(adj_rec[e[0], e[1]]))
pos.append(adj_orig[e[0], e[1]])
preds_neg = []
neg = []
for e in edges_neg:
preds_neg.append(sigmoid(adj_rec[e[0], e[1]]))
neg.append(adj_orig[e[0], e[1]])
preds_all = np.hstack([preds, preds_neg])
labels_all = np.hstack([np.ones(len(preds)), np.zeros(len(preds))])
roc_score = roc_auc_score(labels_all, preds_all)
ap_score = average_precision_score(labels_all, preds_all)
return roc_score, ap_score
cost_val = []
acc_val = []
val_roc_score = []
adj_label = adj_train + sp.eye(adj_train.shape[0])
adj_label = sparse_to_tuple(adj_label)
# Train model
for epoch in range(FLAGS.epochs):
t = time.time()
# Construct feed dictionary
feed_dict = construct_feed_dict(adj_norm, adj_label, features, placeholders)
feed_dict.update({placeholders['dropout']: FLAGS.dropout})
# Run single weight update
outs = sess.run([opt.opt_op, opt.cost, opt.accuracy, opt.z], feed_dict=feed_dict)
# Compute average loss
avg_cost = outs[1]
avg_accuracy = outs[2]
z = outs[3]
roc_curr, ap_curr = get_roc_score(val_edges, val_edges_false)
val_roc_score.append(roc_curr)
print(("Epoch:", '%04d' % (epoch + 1), "train_loss=", "{:.5f}".format(avg_cost),
"train_acc=", "{:.5f}".format(avg_accuracy), "val_roc=", "{:.5f}".format(val_roc_score[-1]),
"val_ap=", "{:.5f}".format(ap_curr),
"time=", "{:.5f}".format(time.time() - t)))
print("z matrix")
print(z)
print("---------------")
print("Optimization Finished!")
roc_score, ap_score = get_roc_score(test_edges, test_edges_false)
print(('Test ROC score: ' + str(roc_score)))
print(('Test AP score: ' + str(ap_score)))
| [
"numpy.dot",
"numpy.hstack",
"tensorflow.sparse_placeholder",
"sklearn.metrics.roc_auc_score",
"scipy.sparse.eye",
"tensorflow.placeholder_with_default",
"tensorflow.sparse_tensor_to_dense",
"tensorflow.global_variables_initializer",
"scipy.sparse.identity",
"tensorflow.name_scope",
"tensorflow.Session",
"sklearn.metrics.average_precision_score",
"numpy.exp"
] | gae/train.py | [(40, 'input_data.load_data', 'load_data', (['dataset_str'], {}), False, 'from input_data import load_data\n'), (47, 'preprocessing.mask_test_edges', 'mask_test_edges', (['adj'], {}), False, 'from preprocessing import preprocess_graph, construct_feed_dict, sparse_to_tuple, mask_test_edges\n'), (54, 'preprocessing.preprocess_graph', 'preprocess_graph', (['adj'], {}), False, 'from preprocessing import preprocess_graph, construct_feed_dict, sparse_to_tuple, mask_test_edges\n'), (97, 'tensorflow.Session', 'tf.Session', ([], {}), True, 'import tensorflow as tf\n'), (139, 'preprocessing.sparse_to_tuple', 'sparse_to_tuple', (['adj_label'], {}), False, 'from preprocessing import preprocess_graph, construct_feed_dict, sparse_to_tuple, mask_test_edges\n'), (51, 'scipy.sparse.identity', 'sp.identity', (['features.shape[0]'], {}), True, 'import scipy.sparse as sp\n'), (58, 'tensorflow.sparse_placeholder', 'tf.sparse_placeholder', (['tf.float32'], {}), True, 'import tensorflow as tf\n'), (59, 'tensorflow.sparse_placeholder', 'tf.sparse_placeholder', (['tf.float32'], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.sparse_placeholder', 'tf.sparse_placeholder', (['tf.float32'], {}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.placeholder_with_default', 'tf.placeholder_with_default', (['(0.0)'], {'shape': '()'}), True, 'import tensorflow as tf\n'), (73, 'model.GCNModelAE', 'GCNModelAE', (['placeholders', 'num_features', 'features_nonzero'], {}), False, 'from model import GCNModelAE, GCNModelVAE\n'), (81, 'tensorflow.name_scope', 'tf.name_scope', (['"""optimizer"""'], {}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (113, 'numpy.dot', 'np.dot', (['emb', 'emb.T'], {}), True, 'import numpy as np\n'), (126, 'numpy.hstack', 'np.hstack', (['[preds, preds_neg]'], {}), True, 'import numpy as np\n'), (128, 'sklearn.metrics.roc_auc_score', 'roc_auc_score', (['labels_all', 'preds_all'], {}), False, 'from sklearn.metrics import roc_auc_score\n'), (129, 'sklearn.metrics.average_precision_score', 'average_precision_score', (['labels_all', 'preds_all'], {}), False, 'from sklearn.metrics import average_precision_score\n'), (138, 'scipy.sparse.eye', 'sp.eye', (['adj_train.shape[0]'], {}), True, 'import scipy.sparse as sp\n'), (144, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (146, 'preprocessing.construct_feed_dict', 'construct_feed_dict', (['adj_norm', 'adj_label', 'features', 'placeholders'], {}), False, 'from preprocessing import preprocess_graph, construct_feed_dict, sparse_to_tuple, mask_test_edges\n'), (75, 'model.GCNModelVAE', 'GCNModelVAE', (['placeholders', 'num_features', 'num_nodes', 'features_nonzero'], {}), False, 'from model import GCNModelAE, GCNModelVAE\n'), (110, 'numpy.exp', 'np.exp', (['(-x)'], {}), True, 'import numpy as np\n'), (84, 'tensorflow.sparse_tensor_to_dense', 'tf.sparse_tensor_to_dense', (["placeholders['adj_orig']"], {'validate_indices': '(False)'}), True, 'import tensorflow as tf\n'), (161, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (90, 'tensorflow.sparse_tensor_to_dense', 'tf.sparse_tensor_to_dense', (["placeholders['adj_orig']"], {'validate_indices': '(False)'}), True, 'import tensorflow as tf\n')] |
scorelab/Elphas | be3e3906fa1f69155dc3f61f5c0bf21568e712c9 | # Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""Tests for object_detection.trainer."""
import tensorflow as tf
from google.protobuf import text_format
from object_detection import trainer
from object_detection.core import losses
from object_detection.core import model
from object_detection.core import standard_fields as fields
from object_detection.protos import train_pb2
NUMBER_OF_CLASSES = 2
def get_input_function():
"""A function to get test inputs. Returns an image with one box."""
image = tf.random_uniform([32, 32, 3], dtype=tf.float32)
key = tf.constant('image_000000')
class_label = tf.random_uniform(
[1], minval=0, maxval=NUMBER_OF_CLASSES, dtype=tf.int32)
box_label = tf.random_uniform(
[1, 4], minval=0.4, maxval=0.6, dtype=tf.float32)
return {
fields.InputDataFields.image: image,
fields.InputDataFields.key: key,
fields.InputDataFields.groundtruth_classes: class_label,
fields.InputDataFields.groundtruth_boxes: box_label
}
class FakeDetectionModel(model.DetectionModel):
"""A simple (and poor) DetectionModel for use in test."""
def __init__(self):
super(FakeDetectionModel, self).__init__(num_classes=NUMBER_OF_CLASSES)
self._classification_loss = losses.WeightedSigmoidClassificationLoss()
self._localization_loss = losses.WeightedSmoothL1LocalizationLoss()
def preprocess(self, inputs):
"""Input preprocessing, resizes images to 28x28.
Args:
inputs: a [batch, height_in, width_in, channels] float32 tensor
representing a batch of images with values between 0 and 255.0.
Returns:
preprocessed_inputs: a [batch, 28, 28, channels] float32 tensor.
true_image_shapes: int32 tensor of shape [batch, 3] where each row is
of the form [height, width, channels] indicating the shapes
of true images in the resized images, as resized images can be padded
with zeros.
"""
true_image_shapes = [inputs.shape[:-1].as_list()
for _ in range(inputs.shape[-1])]
return tf.image.resize_images(inputs, [28, 28]), true_image_shapes
def predict(self, preprocessed_inputs, true_image_shapes):
"""Prediction tensors from inputs tensor.
Args:
preprocessed_inputs: a [batch, 28, 28, channels] float32 tensor.
true_image_shapes: int32 tensor of shape [batch, 3] where each row is
of the form [height, width, channels] indicating the shapes
of true images in the resized images, as resized images can be padded
with zeros.
Returns:
prediction_dict: a dictionary holding prediction tensors to be
passed to the Loss or Postprocess functions.
"""
flattened_inputs = tf.contrib.layers.flatten(preprocessed_inputs)
class_prediction = tf.contrib.layers.fully_connected(
flattened_inputs, self._num_classes)
box_prediction = tf.contrib.layers.fully_connected(flattened_inputs, 4)
return {
'class_predictions_with_background': tf.reshape(
class_prediction, [-1, 1, self._num_classes]),
'box_encodings': tf.reshape(box_prediction, [-1, 1, 4])
}
def postprocess(self, prediction_dict, true_image_shapes, **params):
"""Convert predicted output tensors to final detections. Unused.
Args:
prediction_dict: a dictionary holding prediction tensors.
true_image_shapes: int32 tensor of shape [batch, 3] where each row is
of the form [height, width, channels] indicating the shapes
of true images in the resized images, as resized images can be padded
with zeros.
**params: Additional keyword arguments for specific implementations of
DetectionModel.
Returns:
detections: a dictionary with empty fields.
"""
return {
'detection_boxes': None,
'detection_scores': None,
'detection_classes': None,
'num_detections': None
}
def loss(self, prediction_dict, true_image_shapes):
"""Compute scalar loss tensors with respect to provided groundtruth.
Calling this function requires that groundtruth tensors have been
provided via the provide_groundtruth function.
Args:
prediction_dict: a dictionary holding predicted tensors
true_image_shapes: int32 tensor of shape [batch, 3] where each row is
of the form [height, width, channels] indicating the shapes
of true images in the resized images, as resized images can be padded
with zeros.
Returns:
a dictionary mapping strings (loss names) to scalar tensors representing
loss values.
"""
batch_reg_targets = tf.stack(
self.groundtruth_lists(fields.BoxListFields.boxes))
batch_cls_targets = tf.stack(
self.groundtruth_lists(fields.BoxListFields.classes))
weights = tf.constant(
1.0, dtype=tf.float32,
shape=[len(self.groundtruth_lists(fields.BoxListFields.boxes)), 1])
location_losses = self._localization_loss(
prediction_dict['box_encodings'], batch_reg_targets,
weights=weights)
cls_losses = self._classification_loss(
prediction_dict['class_predictions_with_background'], batch_cls_targets,
weights=weights)
loss_dict = {
'localization_loss': tf.reduce_sum(location_losses),
'classification_loss': tf.reduce_sum(cls_losses),
}
return loss_dict
def restore_map(self, from_detection_checkpoint=True):
"""Returns a map of variables to load from a foreign checkpoint.
Args:
from_detection_checkpoint: whether to restore from a full detection
checkpoint (with compatible variable names) or to restore from a
classification checkpoint for initialization prior to training.
Returns:
A dict mapping variable names to variables.
"""
return {var.op.name: var for var in tf.global_variables()}
class TrainerTest(tf.test.TestCase):
def test_configure_trainer_and_train_two_steps(self):
train_config_text_proto = """
optimizer {
adam_optimizer {
learning_rate {
constant_learning_rate {
learning_rate: 0.01
}
}
}
}
data_augmentation_options {
random_adjust_brightness {
max_delta: 0.2
}
}
data_augmentation_options {
random_adjust_contrast {
min_delta: 0.7
max_delta: 1.1
}
}
num_steps: 2
"""
train_config = train_pb2.TrainConfig()
text_format.Merge(train_config_text_proto, train_config)
train_dir = self.get_temp_dir()
trainer.train(create_tensor_dict_fn=get_input_function,
create_model_fn=FakeDetectionModel,
train_config=train_config,
master='',
task=0,
num_clones=1,
worker_replicas=1,
clone_on_cpu=True,
ps_tasks=0,
worker_job_name='worker',
is_chief=True,
train_dir=train_dir)
if __name__ == '__main__':
tf.test.main()
| [
"tensorflow.constant",
"tensorflow.image.resize_images",
"tensorflow.reduce_sum",
"tensorflow.reshape",
"tensorflow.global_variables",
"tensorflow.test.main",
"tensorflow.contrib.layers.fully_connected",
"tensorflow.contrib.layers.flatten",
"tensorflow.random_uniform"
] | back-end/object_detection/trainer_test.py | [(34, 'tensorflow.random_uniform', 'tf.random_uniform', (['[32, 32, 3]'], {'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.constant', 'tf.constant', (['"""image_000000"""'], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.random_uniform', 'tf.random_uniform', (['[1]'], {'minval': '(0)', 'maxval': 'NUMBER_OF_CLASSES', 'dtype': 'tf.int32'}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.random_uniform', 'tf.random_uniform', (['[1, 4]'], {'minval': '(0.4)', 'maxval': '(0.6)', 'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (220, 'tensorflow.test.main', 'tf.test.main', ([], {}), True, 'import tensorflow as tf\n'), (54, 'object_detection.core.losses.WeightedSigmoidClassificationLoss', 'losses.WeightedSigmoidClassificationLoss', ([], {}), False, 'from object_detection.core import losses\n'), (55, 'object_detection.core.losses.WeightedSmoothL1LocalizationLoss', 'losses.WeightedSmoothL1LocalizationLoss', ([], {}), False, 'from object_detection.core import losses\n'), (89, 'tensorflow.contrib.layers.flatten', 'tf.contrib.layers.flatten', (['preprocessed_inputs'], {}), True, 'import tensorflow as tf\n'), (90, 'tensorflow.contrib.layers.fully_connected', 'tf.contrib.layers.fully_connected', (['flattened_inputs', 'self._num_classes'], {}), True, 'import tensorflow as tf\n'), (92, 'tensorflow.contrib.layers.fully_connected', 'tf.contrib.layers.fully_connected', (['flattened_inputs', '(4)'], {}), True, 'import tensorflow as tf\n'), (200, 'object_detection.protos.train_pb2.TrainConfig', 'train_pb2.TrainConfig', ([], {}), False, 'from object_detection.protos import train_pb2\n'), (201, 'google.protobuf.text_format.Merge', 'text_format.Merge', (['train_config_text_proto', 'train_config'], {}), False, 'from google.protobuf import text_format\n'), (205, 'object_detection.trainer.train', 'trainer.train', ([], {'create_tensor_dict_fn': 'get_input_function', 'create_model_fn': 'FakeDetectionModel', 'train_config': 'train_config', 'master': '""""""', 'task': '(0)', 'num_clones': '(1)', 'worker_replicas': '(1)', 'clone_on_cpu': '(True)', 'ps_tasks': '(0)', 'worker_job_name': '"""worker"""', 'is_chief': '(True)', 'train_dir': 'train_dir'}), False, 'from object_detection import trainer\n'), (73, 'tensorflow.image.resize_images', 'tf.image.resize_images', (['inputs', '[28, 28]'], {}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.reshape', 'tf.reshape', (['class_prediction', '[-1, 1, self._num_classes]'], {}), True, 'import tensorflow as tf\n'), (97, 'tensorflow.reshape', 'tf.reshape', (['box_prediction', '[-1, 1, 4]'], {}), True, 'import tensorflow as tf\n'), (155, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['location_losses'], {}), True, 'import tensorflow as tf\n'), (156, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['cls_losses'], {}), True, 'import tensorflow as tf\n'), (171, 'tensorflow.global_variables', 'tf.global_variables', ([], {}), True, 'import tensorflow as tf\n')] |
yangw1234/models-1 | 7e7f484f4f22c760f9a5af836f57a3602b4fa7a6 | #
# -*- coding: utf-8 -*-
#
# Copyright (c) 2018 Intel Corporation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
#
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import argparse
import sys
import os
import time
import numpy as np
from google.protobuf import text_format
import tensorflow as tf
import preprocessing
import datasets
NUM_TEST_IMAGES = 50000
def load_graph(model_file):
graph = tf.Graph()
graph_def = tf.compat.v1.GraphDef()
import os
file_ext = os.path.splitext(model_file)[1]
with open(model_file, "rb") as f:
if file_ext == '.pbtxt':
text_format.Merge(f.read(), graph_def)
else:
graph_def.ParseFromString(f.read())
with graph.as_default():
tf.import_graph_def(graph_def, name='')
tf.io.write_graph(graph_def, '/tmp/', 'optimized_graph.pb',as_text=False)
return graph
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--input_graph", default=None,
help="graph/model to be executed")
parser.add_argument("--data_location", default=None,
help="full path to the validation data")
parser.add_argument("--input_height", default=None,
type=int, help="input height")
parser.add_argument("--input_width", default=None,
type=int, help="input width")
parser.add_argument("--batch_size", default=32,
type=int, help="batch size")
parser.add_argument("--input_layer", default="input",
help="name of input layer")
parser.add_argument("--output_layer", default="resnet_v1_101/SpatialSqueeze",
help="name of output layer")
parser.add_argument(
'--num_inter_threads',
help='number threads across operators',
type=int, default=1)
parser.add_argument(
'--num_intra_threads',
help='number threads for an operator',
type=int, default=1)
args = parser.parse_args()
if args.input_graph:
model_file = args.input_graph
else:
sys.exit("Please provide a graph file.")
if args.input_height:
input_height = args.input_height
else:
input_height = 224
if args.input_width:
input_width = args.input_width
else:
input_width = 224
batch_size = args.batch_size
input_layer = args.input_layer
output_layer = args.output_layer
num_inter_threads = args.num_inter_threads
num_intra_threads = args.num_intra_threads
data_location = args.data_location
dataset = datasets.ImagenetData(data_location)
preprocessor = preprocessing.ImagePreprocessor(
input_height, input_width, batch_size,
1, # device count
tf.float32, # data_type for input fed to the graph
train=False, # doing inference
resize_method='crop')
images, labels = preprocessor.minibatch(dataset, subset='train')
graph = load_graph(model_file)
input_tensor = graph.get_tensor_by_name(input_layer + ":0")
output_tensor = graph.get_tensor_by_name(output_layer + ":0")
config = tf.compat.v1.ConfigProto()
config.inter_op_parallelism_threads = num_inter_threads
config.intra_op_parallelism_threads = num_intra_threads
total_accuracy1, total_accuracy5 = (0.0, 0.0)
num_processed_images = 0
num_remaining_images = 5000
top1 = 0
with tf.compat.v1.Session() as sess:
sess_graph = tf.compat.v1.Session(graph=graph, config=config)
while num_remaining_images >= batch_size:
# Reads and preprocess data
np_images, np_labels = sess.run([images[0], labels[0]])
np_labels -= 1
#print(np_labels.shape)
num_processed_images += batch_size
num_remaining_images -= batch_size
# Compute inference on the preprocessed data
predictions1 = sess_graph.run(output_tensor,
{input_tensor: np_images})
#predictions = predictions +1
#print(predictions1)
predictions2 = tf.argmax(input=predictions1, axis=1)
predictions = sess.run(predictions2)
top1 += batch_size - (np.count_nonzero(predictions - np_labels))
#print(top1/num_processed_images)
#print(num_processed_images)
#print(predictions)
#accuracy1 = tf.reduce_sum(
# tf.nn.in_top_k(tf.cast(tf.Variable(predictions2), tf.float32),
# tf.cast((tf.constant(np_labels), 1), tf.float32)))
accuracy1 = tf.reduce_sum(
input_tensor=tf.cast(tf.nn.in_top_k(predictions=tf.constant(predictions1),
targets=tf.constant(np_labels), k=1), tf.float32))
accuracy5 = tf.reduce_sum(
input_tensor=tf.cast(tf.nn.in_top_k(predictions=tf.constant(predictions1),
targets=tf.constant(np_labels), k=5), tf.float32))
np_accuracy1, np_accuracy5 = sess.run([accuracy1, accuracy5])
##print(labels)
total_accuracy1 += np_accuracy1
total_accuracy5 += np_accuracy5
print("Processed %d images. (Top1 accuracy, Top5 accuracy) = (%0.4f, %0.4f)" \
% (num_processed_images, total_accuracy1/num_processed_images,
total_accuracy5/num_processed_images))
| [
"tensorflow.Graph",
"tensorflow.import_graph_def",
"tensorflow.compat.v1.ConfigProto",
"tensorflow.constant",
"tensorflow.io.write_graph",
"tensorflow.compat.v1.Session",
"numpy.count_nonzero",
"tensorflow.compat.v1.GraphDef",
"tensorflow.argmax"
] | models/image_recognition/tensorflow/resnet101/int8/calibration.py | [(55, 'tensorflow.Graph', 'tf.Graph', ([], {}), True, 'import tensorflow as tf\n'), (56, 'tensorflow.compat.v1.GraphDef', 'tf.compat.v1.GraphDef', ([], {}), True, 'import tensorflow as tf\n'), (73, 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {}), False, 'import argparse\n'), (116, 'datasets.ImagenetData', 'datasets.ImagenetData', (['data_location'], {}), False, 'import datasets\n'), (117, 'preprocessing.ImagePreprocessor', 'preprocessing.ImagePreprocessor', (['input_height', 'input_width', 'batch_size', '(1)', 'tf.float32'], {'train': '(False)', 'resize_method': '"""crop"""'}), False, 'import preprocessing\n'), (128, 'tensorflow.compat.v1.ConfigProto', 'tf.compat.v1.ConfigProto', ([], {}), True, 'import tensorflow as tf\n'), (59, 'os.path.splitext', 'os.path.splitext', (['model_file'], {}), False, 'import os\n'), (67, 'tensorflow.import_graph_def', 'tf.import_graph_def', (['graph_def'], {'name': '""""""'}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.io.write_graph', 'tf.io.write_graph', (['graph_def', '"""/tmp/"""', '"""optimized_graph.pb"""'], {'as_text': '(False)'}), True, 'import tensorflow as tf\n'), (101, 'sys.exit', 'sys.exit', (['"""Please provide a graph file."""'], {}), False, 'import sys\n'), (136, 'tensorflow.compat.v1.Session', 'tf.compat.v1.Session', ([], {}), True, 'import tensorflow as tf\n'), (137, 'tensorflow.compat.v1.Session', 'tf.compat.v1.Session', ([], {'graph': 'graph', 'config': 'config'}), True, 'import tensorflow as tf\n'), (151, 'tensorflow.argmax', 'tf.argmax', ([], {'input': 'predictions1', 'axis': '(1)'}), True, 'import tensorflow as tf\n'), (153, 'numpy.count_nonzero', 'np.count_nonzero', (['(predictions - np_labels)'], {}), True, 'import numpy as np\n'), (161, 'tensorflow.constant', 'tf.constant', (['predictions1'], {}), True, 'import tensorflow as tf\n'), (162, 'tensorflow.constant', 'tf.constant', (['np_labels'], {}), True, 'import tensorflow as tf\n'), (165, 'tensorflow.constant', 'tf.constant', (['predictions1'], {}), True, 'import tensorflow as tf\n'), (166, 'tensorflow.constant', 'tf.constant', (['np_labels'], {}), True, 'import tensorflow as tf\n')] |
VirgiAgl/GPflow | 95e77a5f2fe1514a30f87b5ed03ad72bbce8dead | # Copyright 2017 the GPflow authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.from __future__ import print_function
# -*- coding: utf-8 -*-
import numpy as np
import tensorflow as tf
import gpflow
from gpflow.kullback_leiblers import gauss_kl
from numpy.testing import assert_almost_equal
import pytest
from gpflow import settings
from gpflow.test_util import session_tf
def squareT(A):
"""
Returns (A Aᵀ)
"""
return A.dot(A.T)
def make_sqrt_data(rng, N, M):
return np.array([np.tril(rng.randn(M, M)) for _ in range(N)]) # N x M x M
def make_K_batch_data(rng, N, M):
K_np = rng.randn(N, M, M)
beye = np.array([np.eye(M) for _ in range(N)])
return .1 * (K_np + np.transpose(K_np, (0, 2, 1))) + beye
class Datum:
M, N = 5, 4
rng = np.random.RandomState(0)
mu_data = rng.randn(M, N) # M x N
K_data = squareT(rng.randn(M, M)) + 1e-6 * np.eye(M) # M x M
I = np.eye(M) # M x M
sqrt_data = make_sqrt_data(rng, N, M) # N x M x M
sqrt_diag_data = rng.randn(M, N) # M x N
K_batch_data = make_K_batch_data(rng, N, M)
@pytest.fixture
def mu(session_tf):
return tf.convert_to_tensor(Datum.mu_data)
@pytest.fixture
def sqrt_diag(session_tf):
return tf.convert_to_tensor(Datum.sqrt_diag_data)
@pytest.fixture
def K(session_tf):
return tf.convert_to_tensor(Datum.K_data)
@pytest.fixture
def K_batch(session_tf):
return tf.convert_to_tensor(Datum.K_batch_data)
@pytest.fixture
def sqrt(session_tf):
return tf.convert_to_tensor(Datum.sqrt_data)
@pytest.fixture()
def I(session_tf):
return tf.convert_to_tensor(Datum.I)
@pytest.mark.parametrize('white', [True, False])
def test_diags(session_tf, white, mu, sqrt_diag, K):
"""
The covariance of q(x) can be Cholesky matrices or diagonal matrices.
Here we make sure the behaviours overlap.
"""
# the chols are diagonal matrices, with the same entries as the diag representation.
chol_from_diag = tf.stack([tf.diag(sqrt_diag[:, i]) for i in range(Datum.N)]) # N x M x M
# run
kl_diag = gauss_kl(mu, sqrt_diag, K if white else None)
kl_dense = gauss_kl(mu, chol_from_diag, K if white else None)
np.testing.assert_allclose(kl_diag.eval(), kl_dense.eval())
@pytest.mark.parametrize('diag', [True, False])
def test_whitened(session_tf, diag, mu, sqrt_diag, I):
"""
Check that K=Identity and K=None give same answer
"""
chol_from_diag = tf.stack([tf.diag(sqrt_diag[:, i]) for i in range(Datum.N)]) # N x M x M
s = sqrt_diag if diag else chol_from_diag
kl_white = gauss_kl(mu, s)
kl_nonwhite = gauss_kl(mu, s, I)
np.testing.assert_allclose(kl_white.eval(), kl_nonwhite.eval())
@pytest.mark.parametrize('shared_k', [True, False])
@pytest.mark.parametrize('diag', [True, False])
def test_sumkl_equals_batchkl(session_tf, shared_k, diag, mu,
sqrt, sqrt_diag, K_batch, K):
"""
gauss_kl implicitely performs a sum of KL divergences
This test checks that doing the sum outside of the function is equivalent
For q(X)=prod q(x_l) and p(X)=prod p(x_l), check that sum KL(q(x_l)||p(x_l)) = KL(q(X)||p(X))
Here, q(X) has covariance L x M x M
p(X) has covariance L x M x M ( or M x M )
Here, q(x_i) has covariance 1 x M x M
p(x_i) has covariance M x M
"""
s = sqrt_diag if diag else sqrt
kl_batch = gauss_kl(mu,s,K if shared_k else K_batch)
kl_sum = []
for n in range(Datum.N):
kl_sum.append(gauss_kl(mu[:, n][:,None], # M x 1
sqrt_diag[:, n][:, None] if diag else sqrt[n, :, :][None, :, :], # 1 x M x M or M x 1
K if shared_k else K_batch[n, :, :][None,:,:])) # 1 x M x M or M x M
kl_sum =tf.reduce_sum(kl_sum)
assert_almost_equal(kl_sum.eval(), kl_batch.eval())
def tf_kl_1d(q_mu, q_sigma, p_var=1.0):
p_var = tf.ones_like(q_sigma) if p_var is None else p_var
q_var = tf.square(q_sigma)
kl = 0.5 * (q_var / p_var + tf.square(q_mu) / p_var - 1 + tf.log(p_var / q_var))
return tf.reduce_sum(kl)
@pytest.mark.parametrize('white', [True, False])
def test_oned(session_tf, white, mu, sqrt, K_batch):
"""
Check that the KL divergence matches a 1D by-hand calculation.
"""
m = 0
mu1d = mu[m,:][None,:] # 1 x N
s1d = sqrt[:,m,m][:,None,None] # N x 1 x 1
K1d = K_batch[:,m,m][:,None,None] # N x 1 x 1
kl = gauss_kl(mu1d,s1d,K1d if not white else None)
kl_tf = tf_kl_1d(tf.reshape(mu1d,(-1,)), # N
tf.reshape(s1d,(-1,)), # N
None if white else tf.reshape(K1d,(-1,))) # N
np.testing.assert_allclose(kl.eval(), kl_tf.eval())
if __name__ == "__main__":
tf.test.main()
| [
"tensorflow.convert_to_tensor",
"tensorflow.reduce_sum",
"numpy.eye",
"tensorflow.reshape",
"tensorflow.ones_like",
"tensorflow.test.main",
"tensorflow.diag",
"tensorflow.log",
"tensorflow.square",
"numpy.transpose",
"numpy.random.RandomState"
] | tests/test_kldiv.py | [(71, 'pytest.fixture', 'pytest.fixture', ([], {}), False, 'import pytest\n'), (75, 'pytest.mark.parametrize', 'pytest.mark.parametrize', (['"""white"""', '[True, False]'], {}), False, 'import pytest\n'), (89, 'pytest.mark.parametrize', 'pytest.mark.parametrize', (['"""diag"""', '[True, False]'], {}), False, 'import pytest\n'), (102, 'pytest.mark.parametrize', 'pytest.mark.parametrize', (['"""shared_k"""', '[True, False]'], {}), False, 'import pytest\n'), (103, 'pytest.mark.parametrize', 'pytest.mark.parametrize', (['"""diag"""', '[True, False]'], {}), False, 'import pytest\n'), (131, 'pytest.mark.parametrize', 'pytest.mark.parametrize', (['"""white"""', '[True, False]'], {}), False, 'import pytest\n'), (43, 'numpy.random.RandomState', 'np.random.RandomState', (['(0)'], {}), True, 'import numpy as np\n'), (46, 'numpy.eye', 'np.eye', (['M'], {}), True, 'import numpy as np\n'), (53, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['Datum.mu_data'], {}), True, 'import tensorflow as tf\n'), (57, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['Datum.sqrt_diag_data'], {}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['Datum.K_data'], {}), True, 'import tensorflow as tf\n'), (65, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['Datum.K_batch_data'], {}), True, 'import tensorflow as tf\n'), (69, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['Datum.sqrt_data'], {}), True, 'import tensorflow as tf\n'), (73, 'tensorflow.convert_to_tensor', 'tf.convert_to_tensor', (['Datum.I'], {}), True, 'import tensorflow as tf\n'), (84, 'gpflow.kullback_leiblers.gauss_kl', 'gauss_kl', (['mu', 'sqrt_diag', '(K if white else None)'], {}), False, 'from gpflow.kullback_leiblers import gauss_kl\n'), (85, 'gpflow.kullback_leiblers.gauss_kl', 'gauss_kl', (['mu', 'chol_from_diag', '(K if white else None)'], {}), False, 'from gpflow.kullback_leiblers import gauss_kl\n'), (97, 'gpflow.kullback_leiblers.gauss_kl', 'gauss_kl', (['mu', 's'], {}), False, 'from gpflow.kullback_leiblers import gauss_kl\n'), (98, 'gpflow.kullback_leiblers.gauss_kl', 'gauss_kl', (['mu', 's', 'I'], {}), False, 'from gpflow.kullback_leiblers import gauss_kl\n'), (116, 'gpflow.kullback_leiblers.gauss_kl', 'gauss_kl', (['mu', 's', '(K if shared_k else K_batch)'], {}), False, 'from gpflow.kullback_leiblers import gauss_kl\n'), (122, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['kl_sum'], {}), True, 'import tensorflow as tf\n'), (127, 'tensorflow.square', 'tf.square', (['q_sigma'], {}), True, 'import tensorflow as tf\n'), (129, 'tensorflow.reduce_sum', 'tf.reduce_sum', (['kl'], {}), True, 'import tensorflow as tf\n'), (141, 'gpflow.kullback_leiblers.gauss_kl', 'gauss_kl', (['mu1d', 's1d', '(K1d if not white else None)'], {}), False, 'from gpflow.kullback_leiblers import gauss_kl\n'), (149, 'tensorflow.test.main', 'tf.test.main', ([], {}), True, 'import tensorflow as tf\n'), (126, 'tensorflow.ones_like', 'tf.ones_like', (['q_sigma'], {}), True, 'import tensorflow as tf\n'), (142, 'tensorflow.reshape', 'tf.reshape', (['mu1d', '(-1,)'], {}), True, 'import tensorflow as tf\n'), (143, 'tensorflow.reshape', 'tf.reshape', (['s1d', '(-1,)'], {}), True, 'import tensorflow as tf\n'), (38, 'numpy.eye', 'np.eye', (['M'], {}), True, 'import numpy as np\n'), (45, 'numpy.eye', 'np.eye', (['M'], {}), True, 'import numpy as np\n'), (82, 'tensorflow.diag', 'tf.diag', (['sqrt_diag[:, (i)]'], {}), True, 'import tensorflow as tf\n'), (94, 'tensorflow.diag', 'tf.diag', (['sqrt_diag[:, (i)]'], {}), True, 'import tensorflow as tf\n'), (119, 'gpflow.kullback_leiblers.gauss_kl', 'gauss_kl', (['mu[:, (n)][:, (None)]', '(sqrt_diag[:, (n)][:, (None)] if diag else sqrt[(n), :, :][(None), :, :])', '(K if shared_k else K_batch[(n), :, :][(None), :, :])'], {}), False, 'from gpflow.kullback_leiblers import gauss_kl\n'), (128, 'tensorflow.log', 'tf.log', (['(p_var / q_var)'], {}), True, 'import tensorflow as tf\n'), (144, 'tensorflow.reshape', 'tf.reshape', (['K1d', '(-1,)'], {}), True, 'import tensorflow as tf\n'), (39, 'numpy.transpose', 'np.transpose', (['K_np', '(0, 2, 1)'], {}), True, 'import numpy as np\n'), (128, 'tensorflow.square', 'tf.square', (['q_mu'], {}), True, 'import tensorflow as tf\n')] |
DanielDimanov/tpu | 883065e163e4f7745a60aa726b426cdca35d38aa | # Copyright 2019 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""An executor class for running model on TPUs."""
import collections
import os
import numpy as np
import tensorflow as tf
from evaluation import factory
def write_summary(logs, summary_writer, current_step):
"""Write out summaries of current training step for the checkpoint."""
with tf.Graph().as_default():
summaries = [tf.Summary.Value(tag=tag, simple_value=value)
for tag, value in logs.items()]
tf_summary = tf.Summary(value=summaries)
summary_writer.add_summary(tf_summary, current_step)
class TpuExecutor(object):
"""An executor class for running jobs on TPUs."""
def __init__(self, model_fn, params):
self._model_dir = params.model_dir
# Sets up evaluator.
self._evaluator = factory.evaluator_generator(params.eval)
input_partition_dims = None
num_cores_per_replica = None
if params.use_tpu:
tpu_cluster_resolver = tf.contrib.cluster_resolver.TPUClusterResolver(
params.platform.tpu,
zone=params.platform.tpu_zone,
project=params.platform.gcp_project)
tpu_grpc_url = tpu_cluster_resolver.get_master()
tf.Session.reset(tpu_grpc_url)
# If the input image is transposed (from NHWC to HWCN), the partition
# dimensions also need to be transposed the same way.
def _maybe_transpose(input_partition_dims):
if input_partition_dims and params.train.transpose_input:
return [input_partition_dims[i] for i in [1, 2, 3, 0]]
else:
return input_partition_dims
if params.train.input_partition_dims is not None:
num_cores_per_replica = params.train.num_cores_per_replica
input_partition_dims = params.train.input_partition_dims
# Parse 'None' into None.
input_partition_dims = [
None if x == 'None' else _maybe_transpose(x)
for x in input_partition_dims
]
else:
tpu_cluster_resolver = None
# Sets up config for TPUEstimator.
tpu_config = tf.contrib.tpu.TPUConfig(
params.train.iterations_per_loop,
num_cores_per_replica=num_cores_per_replica,
input_partition_dims=input_partition_dims,
per_host_input_for_training=tf.contrib.tpu.InputPipelineConfig.PER_HOST_V2 # pylint: disable=line-too-long
)
run_config = tf.contrib.tpu.RunConfig(
cluster=tpu_cluster_resolver,
evaluation_master=params.platform.eval_master,
model_dir=params.model_dir,
log_step_count_steps=params.train.iterations_per_loop,
tpu_config=tpu_config,
)
self._estimator = tf.contrib.tpu.TPUEstimator(
model_fn=model_fn,
use_tpu=params.use_tpu,
train_batch_size=params.train.train_batch_size,
eval_batch_size=params.eval.eval_batch_size,
predict_batch_size=params.predict.predict_batch_size,
config=run_config,
params=params.as_dict())
def train(self, input_fn, steps):
"""Training the model with training data and labels in input_fn."""
self._estimator.train(input_fn=input_fn, max_steps=steps)
def evaluate(self, input_fn, eval_steps, checkpoint_path=None):
"""Evaluating the model with data and labels in input_fn.
Args:
input_fn: Eval `input function` for tf.Estimator.
eval_steps: Int - the number of steps to evaluate.
checkpoint_path: String - the checkpoint path to evaluate. If it is None,
the latest checkpoint will be inferred from `model_dir` of `Estimator`.
Returns:
A dictionary as evaluation metrics.
"""
if not checkpoint_path:
checkpoint_path = self._estimator.latest_checkpoint()
current_step = int(os.path.basename(checkpoint_path).split('-')[1])
predictor = self._estimator.predict(
input_fn=input_fn,
checkpoint_path=checkpoint_path,
yield_single_examples=False)
losses = collections.defaultdict(lambda: 0.0)
for _ in range(eval_steps):
outputs = predictor.next()
predictions = {}
groundtruths = {}
for key, val in outputs.items():
if key[0:5] == 'pred_':
predictions[key[5::]] = val
if key[0:3] == 'gt_':
groundtruths[key[3::]] = val
if key[0:5] == 'loss_':
losses[key[5::]] += (np.mean(val) / eval_steps)
self._evaluator.update(predictions, groundtruths)
metrics = self._evaluator.evaluate()
# Summary writer writes out eval metrics.
output_dir = os.path.join(self._model_dir, 'eval')
tf.gfile.MakeDirs(output_dir)
summary_writer = tf.summary.FileWriter(output_dir)
write_summary(metrics, summary_writer, current_step)
write_summary(losses, summary_writer, current_step)
summary_writer.close()
return metrics
def predict(self, input_fn):
return self._estimator.predict(input_fn=input_fn)
| [
"tensorflow.contrib.cluster_resolver.TPUClusterResolver",
"tensorflow.Graph",
"tensorflow.summary.FileWriter",
"tensorflow.contrib.tpu.RunConfig",
"tensorflow.gfile.MakeDirs",
"tensorflow.Summary.Value",
"numpy.mean",
"tensorflow.contrib.tpu.TPUConfig",
"tensorflow.Summary",
"tensorflow.Session.reset"
] | models/official/detection/executor/tpu_executor.py | [(31, 'tensorflow.Summary', 'tf.Summary', ([], {'value': 'summaries'}), True, 'import tensorflow as tf\n'), (41, 'evaluation.factory.evaluator_generator', 'factory.evaluator_generator', (['params.eval'], {}), False, 'from evaluation import factory\n'), (74, 'tensorflow.contrib.tpu.TPUConfig', 'tf.contrib.tpu.TPUConfig', (['params.train.iterations_per_loop'], {'num_cores_per_replica': 'num_cores_per_replica', 'input_partition_dims': 'input_partition_dims', 'per_host_input_for_training': 'tf.contrib.tpu.InputPipelineConfig.PER_HOST_V2'}), True, 'import tensorflow as tf\n'), (81, 'tensorflow.contrib.tpu.RunConfig', 'tf.contrib.tpu.RunConfig', ([], {'cluster': 'tpu_cluster_resolver', 'evaluation_master': 'params.platform.eval_master', 'model_dir': 'params.model_dir', 'log_step_count_steps': 'params.train.iterations_per_loop', 'tpu_config': 'tpu_config'}), True, 'import tensorflow as tf\n'), (121, 'collections.defaultdict', 'collections.defaultdict', (['(lambda : 0.0)'], {}), False, 'import collections\n'), (137, 'os.path.join', 'os.path.join', (['self._model_dir', '"""eval"""'], {}), False, 'import os\n'), (138, 'tensorflow.gfile.MakeDirs', 'tf.gfile.MakeDirs', (['output_dir'], {}), True, 'import tensorflow as tf\n'), (139, 'tensorflow.summary.FileWriter', 'tf.summary.FileWriter', (['output_dir'], {}), True, 'import tensorflow as tf\n'), (29, 'tensorflow.Summary.Value', 'tf.Summary.Value', ([], {'tag': 'tag', 'simple_value': 'value'}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.contrib.cluster_resolver.TPUClusterResolver', 'tf.contrib.cluster_resolver.TPUClusterResolver', (['params.platform.tpu'], {'zone': 'params.platform.tpu_zone', 'project': 'params.platform.gcp_project'}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.Session.reset', 'tf.Session.reset', (['tpu_grpc_url'], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.Graph', 'tf.Graph', ([], {}), True, 'import tensorflow as tf\n'), (116, 'os.path.basename', 'os.path.basename', (['checkpoint_path'], {}), False, 'import os\n'), (132, 'numpy.mean', 'np.mean', (['val'], {}), True, 'import numpy as np\n')] |
trisct/ldif | 3dfa33c88b15178eebac3c7d93e5de1ca2682d23 | # Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Lint as: python3
"""A local tf.Dataset wrapper for LDIF."""
import os
import sys
import time
import tensorflow as tf
# LDIF is an internal package, should be imported last.
# pylint: disable=g-bad-import-order
from ldif.inference import example
from ldif.util.file_util import log
# pylint: enable=g-bad-import-order
def load_example_dict(example_directory, log_level=None):
"""Loads an example from disk and makes a str:numpy dictionary out of it."""
if log_level:
log.set_level(log_level)
entry_t = time.time()
start_t = entry_t # Keep the function entry time around for a cumulative print.
e = example.InferenceExample.from_directory(example_directory, verbose=False)
end_t = time.time()
log.verbose(f'Make example: {end_t - start_t}')
start_t = end_t
# The from_directory method should probably optionally take in a synset.
bounding_box_samples = e.uniform_samples
end_t = time.time()
log.verbose(f'Bounding box: {end_t - start_t}')
start_t = end_t
# TODO(kgenova) There is a pitfall here where the depth is divided by 1000,
# after this. So if some other depth images are provided, they would either
# need to also be stored in the GAPS format or be artificially multiplied
# by 1000.
depth_renders = e.depth_images # [20, 224, 224, 1]. 1 or 1000? trailing 1?
assert depth_renders.shape[0] == 1
depth_renders = depth_renders[0, ...]
end_t = time.time()
log.verbose(f'Depth renders: {end_t - start_t}')
start_t = end_t
mesh_name = e.mesh_name
end_t = time.time()
log.verbose(f'Mesh name: {end_t - start_t}')
start_t = end_t
log.verbose(f'Loading {mesh_name} from split {e.split}')
near_surface_samples = e.near_surface_samples
end_t = time.time()
log.verbose(f'NSS: {end_t - start_t}')
start_t = end_t
grid = e.grid
end_t = time.time()
log.verbose(f'Grid: {end_t - start_t}')
start_t = end_t
world2grid = e.world2grid
end_t = time.time()
log.verbose(f'world2grid: {end_t - start_t}')
start_t = end_t
surface_point_samples = e.precomputed_surface_samples_from_dodeca
end_t = time.time()
log.verbose(f'surface points: {end_t - start_t}')
log.verbose(f'load_example_dict total time: {end_t - entry_t}')
return {
'bounding_box_samples': bounding_box_samples,
'depth_renders': depth_renders,
'mesh_name': mesh_name,
'near_surface_samples': near_surface_samples,
'grid': grid,
'world2grid': world2grid,
'surface_point_samples': surface_point_samples,
}
def _float_feature(value):
return tf.train.Feature(float_list=tf.train.FloatList(value=value.flatten()))
def _bytes_feature(value):
if isinstance(value, str):
value = value.encode('utf-8')
return tf.train.Feature(bytes_list=tf.train.BytesList(value=[value]))
def make_tf_example(d):
feature = {
'bounding_box_samples': _float_feature(d['bounding_box_samples']),
'depth_renders': _float_feature(d['depth_renders']),
'mesh_name': _bytes_feature(d['mesh_name']),
'near_surface_samples': _float_feature(d['near_surface_samples']),
'grid': _float_feature(d['grid']),
'world2grid': _float_feature(d['world2grid']),
'surface_point_samples': _float_feature(d['surface_point_samples'])
}
example_proto = tf.train.Example(features=tf.train.Features(feature=feature))
return example_proto.SerializeToString()
def full_featurespec():
return {
'bounding_box_samples': tf.io.FixedLenFeature([100000, 4], tf.float32),
'depth_renders': tf.io.FixedLenFeature([20, 224, 224, 1], tf.float32),
'mesh_name': tf.io.FixedLenFeature([], tf.string),
'near_surface_samples': tf.io.FixedLenFeature([100000, 4], tf.float32),
'grid': tf.io.FixedLenFeature([32, 32, 32], tf.float32),
'world2grid': tf.io.FixedLenFeature([4, 4], tf.float32),
'surface_point_samples': tf.io.FixedLenFeature([10000, 6], tf.float32)
}
def parse_tf_example(example_proto):
d = tf.io.parse_single_example(example_proto, full_featurespec())
return (d['bounding_box_samples'], d['depth_renders'], d['mesh_name'],
d['near_surface_samples'], d['grid'], d['world2grid'],
d['surface_point_samples'])
def _example_dict_tf_func_wrapper(mesh_orig_path):
mesh_orig_path = mesh_orig_path.decode(sys.getdefaultencoding())
assert '/mesh_orig.ply' in mesh_orig_path
example_directory = mesh_orig_path.replace('/mesh_orig.ply', '')
d = load_example_dict(example_directory)
return (d['bounding_box_samples'], d['depth_renders'], d['mesh_name'],
d['near_surface_samples'], d['grid'], d['world2grid'],
d['surface_point_samples'])
def parse_example(filename):
"""A tensorflow function to return a dataset element when mapped"""
return tf.py_func(_example_dict_tf_func_wrapper, [filename], [
tf.float32, tf.float32, tf.string, tf.float32, tf.float32, tf.float32,
tf.float32])
| [
"tensorflow.io.FixedLenFeature",
"tensorflow.train.Features",
"tensorflow.train.BytesList",
"tensorflow.py_func"
] | ldif/datasets/process_element.py | [(34, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (36, 'ldif.inference.example.InferenceExample.from_directory', 'example.InferenceExample.from_directory', (['example_directory'], {'verbose': '(False)'}), False, 'from ldif.inference import example\n'), (37, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (38, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""Make example: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (43, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (44, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""Bounding box: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (53, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (54, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""Depth renders: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (58, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (59, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""Mesh name: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (62, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""Loading {mesh_name} from split {e.split}"""'], {}), False, 'from ldif.util.file_util import log\n'), (64, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (65, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""NSS: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (69, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (70, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""Grid: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (74, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (75, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""world2grid: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (79, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (80, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""surface points: {end_t - start_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (81, 'ldif.util.file_util.log.verbose', 'log.verbose', (['f"""load_example_dict total time: {end_t - entry_t}"""'], {}), False, 'from ldif.util.file_util import log\n'), (148, 'tensorflow.py_func', 'tf.py_func', (['_example_dict_tf_func_wrapper', '[filename]', '[tf.float32, tf.float32, tf.string, tf.float32, tf.float32, tf.float32, tf.\n float32]'], {}), True, 'import tensorflow as tf\n'), (33, 'ldif.util.file_util.log.set_level', 'log.set_level', (['log_level'], {}), False, 'from ldif.util.file_util import log\n'), (119, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[100000, 4]', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (120, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[20, 224, 224, 1]', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (121, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[]', 'tf.string'], {}), True, 'import tensorflow as tf\n'), (122, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[100000, 4]', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[32, 32, 32]', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (124, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[4, 4]', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (125, 'tensorflow.io.FixedLenFeature', 'tf.io.FixedLenFeature', (['[10000, 6]', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (137, 'sys.getdefaultencoding', 'sys.getdefaultencoding', ([], {}), False, 'import sys\n'), (100, 'tensorflow.train.BytesList', 'tf.train.BytesList', ([], {'value': '[value]'}), True, 'import tensorflow as tf\n'), (113, 'tensorflow.train.Features', 'tf.train.Features', ([], {'feature': 'feature'}), True, 'import tensorflow as tf\n')] |
StanislavParovoy/tf_multispeakerTTS_fc | 8663a9b6aad39d4e30e83668ff9525ead1aa01e1 | from synthesizer.utils.symbols import symbols
from synthesizer.utils.text import sequence_to_text
from synthesizer.hparams import hparams_debug_string
from synthesizer.feeder import Feeder
from synthesizer.models import create_model
from synthesizer.utils import ValueWindow, plot
from synthesizer import infolog, audio
from datetime import datetime
from tqdm import tqdm
import tensorflow as tf
import numpy as np
import traceback
import time
import os
log = infolog.log
def add_embedding_stats(summary_writer, embedding_names, paths_to_meta, checkpoint_path):
# Create tensorboard projector
config = tf.contrib.tensorboard.plugins.projector.ProjectorConfig()
config.model_checkpoint_path = checkpoint_path
for embedding_name, path_to_meta in zip(embedding_names, paths_to_meta):
# Initialize config
embedding = config.embeddings.add()
# Specifiy the embedding variable and the metadata
embedding.tensor_name = embedding_name
embedding.metadata_path = path_to_meta
# Project the embeddings to space dimensions for visualization
tf.contrib.tensorboard.plugins.projector.visualize_embeddings(summary_writer, config)
def add_train_stats(model, hparams):
with tf.variable_scope("stats") as scope:
for i in range(hparams.tacotron_num_gpus):
tf.summary.histogram("mel_outputs %d" % i, model.tower_mel_outputs[i])
tf.summary.histogram("mel_targets %d" % i, model.tower_mel_targets[i])
tf.summary.scalar("before_loss", model.before_loss)
tf.summary.scalar("after_loss", model.after_loss)
if hparams.predict_linear:
tf.summary.scalar("linear_loss", model.linear_loss)
for i in range(hparams.tacotron_num_gpus):
tf.summary.histogram("mel_outputs %d" % i, model.tower_linear_outputs[i])
tf.summary.histogram("mel_targets %d" % i, model.tower_linear_targets[i])
tf.summary.scalar("regularization_loss", model.regularization_loss)
tf.summary.scalar("stop_token_loss", model.stop_token_loss)
tf.summary.scalar("loss", model.loss)
tf.summary.scalar("learning_rate", model.learning_rate) # Control learning rate decay speed
if hparams.tacotron_teacher_forcing_mode == "scheduled":
tf.summary.scalar("teacher_forcing_ratio", model.ratio) # Control teacher forcing
# ratio decay when mode = "scheduled"
gradient_norms = [tf.norm(grad) for grad in model.gradients]
tf.summary.histogram("gradient_norm", gradient_norms)
tf.summary.scalar("max_gradient_norm", tf.reduce_max(gradient_norms)) # visualize
# gradients (in case of explosion)
return tf.summary.merge_all()
def add_eval_stats(summary_writer, step, linear_loss, before_loss, after_loss, stop_token_loss,
loss):
values = [
tf.Summary.Value(tag="Tacotron_eval_model/eval_stats/eval_before_loss",
simple_value=before_loss),
tf.Summary.Value(tag="Tacotron_eval_model/eval_stats/eval_after_loss",
simple_value=after_loss),
tf.Summary.Value(tag="Tacotron_eval_model/eval_stats/stop_token_loss",
simple_value=stop_token_loss),
tf.Summary.Value(tag="Tacotron_eval_model/eval_stats/eval_loss", simple_value=loss),
]
if linear_loss is not None:
values.append(tf.Summary.Value(tag="Tacotron_eval_model/eval_stats/eval_linear_loss",
simple_value=linear_loss))
test_summary = tf.Summary(value=values)
summary_writer.add_summary(test_summary, step)
def time_string():
return datetime.now().strftime("%Y-%m-%d %H:%M")
def model_train_mode(args, feeder, hparams, global_step):
with tf.variable_scope("Tacotron_model", reuse=tf.AUTO_REUSE) as scope:
model = create_model("Tacotron", hparams)
model.initialize(feeder.inputs, feeder.input_lengths, feeder.speaker_embeddings,
feeder.mel_targets, feeder.token_targets,
targets_lengths=feeder.targets_lengths, global_step=global_step,
is_training=True, split_infos=feeder.split_infos)
model.add_loss()
model.add_optimizer(global_step)
stats = add_train_stats(model, hparams)
return model, stats
def model_test_mode(args, feeder, hparams, global_step):
with tf.variable_scope("Tacotron_model", reuse=tf.AUTO_REUSE) as scope:
model = create_model("Tacotron", hparams)
model.initialize(feeder.eval_inputs, feeder.eval_input_lengths,
feeder.eval_speaker_embeddings, feeder.eval_mel_targets,
feeder.eval_token_targets, targets_lengths=feeder.eval_targets_lengths,
global_step=global_step, is_training=False, is_evaluating=True,
split_infos=feeder.eval_split_infos)
model.add_loss()
return model
def train(log_dir, args, hparams):
save_dir = os.path.join(log_dir, "taco_pretrained")
plot_dir = os.path.join(log_dir, "plots")
wav_dir = os.path.join(log_dir, "wavs")
mel_dir = os.path.join(log_dir, "mel-spectrograms")
eval_dir = os.path.join(log_dir, "eval-dir")
eval_plot_dir = os.path.join(eval_dir, "plots")
eval_wav_dir = os.path.join(eval_dir, "wavs")
tensorboard_dir = os.path.join(log_dir, "tacotron_events")
meta_folder = os.path.join(log_dir, "metas")
os.makedirs(save_dir, exist_ok=True)
os.makedirs(plot_dir, exist_ok=True)
os.makedirs(wav_dir, exist_ok=True)
os.makedirs(mel_dir, exist_ok=True)
os.makedirs(eval_dir, exist_ok=True)
os.makedirs(eval_plot_dir, exist_ok=True)
os.makedirs(eval_wav_dir, exist_ok=True)
os.makedirs(tensorboard_dir, exist_ok=True)
os.makedirs(meta_folder, exist_ok=True)
checkpoint_fpath = os.path.join(save_dir, "tacotron_model.ckpt")
metadat_fpath = os.path.join(args.synthesizer_root, "train.txt")
log("Checkpoint path: {}".format(checkpoint_fpath))
log("Loading training data from: {}".format(metadat_fpath))
log("Using model: Tacotron")
log(hparams_debug_string())
# Start by setting a seed for repeatability
tf.set_random_seed(hparams.tacotron_random_seed)
# Set up data feeder
coord = tf.train.Coordinator()
with tf.variable_scope("datafeeder") as scope:
feeder = Feeder(coord, metadat_fpath, hparams)
# Set up model:
global_step = tf.Variable(0, name="global_step", trainable=False)
model, stats = model_train_mode(args, feeder, hparams, global_step)
eval_model = model_test_mode(args, feeder, hparams, global_step)
# Embeddings metadata
char_embedding_meta = os.path.join(meta_folder, "CharacterEmbeddings.tsv")
if not os.path.isfile(char_embedding_meta):
with open(char_embedding_meta, "w", encoding="utf-8") as f:
for symbol in symbols:
if symbol == " ":
symbol = "\\s" # For visual purposes, swap space with \s
f.write("{}\n".format(symbol))
char_embedding_meta = char_embedding_meta.replace(log_dir, "..")
# Book keeping
step = 0
time_window = ValueWindow(100)
loss_window = ValueWindow(100)
saver = tf.train.Saver(max_to_keep=5)
log("Tacotron training set to a maximum of {} steps".format(args.tacotron_train_steps))
# Memory allocation on the GPU as needed
config = tf.ConfigProto()
config.gpu_options.allow_growth = True
config.allow_soft_placement = True
# Train
with tf.Session(config=config) as sess:
try:
summary_writer = tf.summary.FileWriter(tensorboard_dir, sess.graph)
sess.run(tf.global_variables_initializer())
# saved model restoring
if args.restore:
# Restore saved model if the user requested it, default = True
try:
checkpoint_state = tf.train.get_checkpoint_state(save_dir)
if checkpoint_state and checkpoint_state.model_checkpoint_path:
log("Loading checkpoint {}".format(checkpoint_state.model_checkpoint_path),
slack=True)
saver.restore(sess, checkpoint_state.model_checkpoint_path)
else:
log("No model to load at {}".format(save_dir), slack=True)
saver.save(sess, checkpoint_fpath, global_step=global_step)
except tf.errors.OutOfRangeError as e:
log("Cannot restore checkpoint: {}".format(e), slack=True)
else:
log("Starting new training!", slack=True)
saver.save(sess, checkpoint_fpath, global_step=global_step)
# initializing feeder
feeder.start_threads(sess)
# Training loop
while not coord.should_stop() and step < args.tacotron_train_steps:
start_time = time.time()
step, loss, opt = sess.run([global_step, model.loss, model.optimize])
time_window.append(time.time() - start_time)
loss_window.append(loss)
message = "Step {:7d} [{:.3f} sec/step, loss={:.5f}, avg_loss={:.5f}]".format(
step, time_window.average, loss, loss_window.average)
log(message, end="\r", slack=(step % args.checkpoint_interval == 0))
#print(message)
if loss > 100 or np.isnan(loss):
log("Loss exploded to {:.5f} at step {}".format(loss, step))
raise Exception("Loss exploded")
if step % args.summary_interval == 0:
log("\nWriting summary at step {}".format(step))
summary_writer.add_summary(sess.run(stats), step)
if step % args.eval_interval == 0:
# Run eval and save eval stats
log("\nRunning evaluation at step {}".format(step))
eval_losses = []
before_losses = []
after_losses = []
stop_token_losses = []
linear_losses = []
linear_loss = None
if hparams.predict_linear:
for i in tqdm(range(feeder.test_steps)):
eloss, before_loss, after_loss, stop_token_loss, linear_loss, mel_p, \
mel_t, t_len, align, lin_p, lin_t = sess.run(
[
eval_model.tower_loss[0], eval_model.tower_before_loss[0],
eval_model.tower_after_loss[0],
eval_model.tower_stop_token_loss[0],
eval_model.tower_linear_loss[0],
eval_model.tower_mel_outputs[0][0],
eval_model.tower_mel_targets[0][0],
eval_model.tower_targets_lengths[0][0],
eval_model.tower_alignments[0][0],
eval_model.tower_linear_outputs[0][0],
eval_model.tower_linear_targets[0][0],
])
eval_losses.append(eloss)
before_losses.append(before_loss)
after_losses.append(after_loss)
stop_token_losses.append(stop_token_loss)
linear_losses.append(linear_loss)
linear_loss = sum(linear_losses) / len(linear_losses)
wav = audio.inv_linear_spectrogram(lin_p.T, hparams)
audio.save_wav(wav, os.path.join(eval_wav_dir,
"step-{}-eval-wave-from-linear.wav".format(
step)), sr=hparams.sample_rate)
else:
for i in tqdm(range(feeder.test_steps)):
eloss, before_loss, after_loss, stop_token_loss, mel_p, mel_t, t_len,\
align = sess.run(
[
eval_model.tower_loss[0], eval_model.tower_before_loss[0],
eval_model.tower_after_loss[0],
eval_model.tower_stop_token_loss[0],
eval_model.tower_mel_outputs[0][0],
eval_model.tower_mel_targets[0][0],
eval_model.tower_targets_lengths[0][0],
eval_model.tower_alignments[0][0]
])
eval_losses.append(eloss)
before_losses.append(before_loss)
after_losses.append(after_loss)
stop_token_losses.append(stop_token_loss)
eval_loss = sum(eval_losses) / len(eval_losses)
before_loss = sum(before_losses) / len(before_losses)
after_loss = sum(after_losses) / len(after_losses)
stop_token_loss = sum(stop_token_losses) / len(stop_token_losses)
log("Saving eval log to {}..".format(eval_dir))
# Save some log to monitor model improvement on same unseen sequence
wav = audio.inv_mel_spectrogram(mel_p.T, hparams)
audio.save_wav(wav, os.path.join(eval_wav_dir,
"step-{}-eval-wave-from-mel.wav".format(step)),
sr=hparams.sample_rate)
plot.plot_alignment(align, os.path.join(eval_plot_dir,
"step-{}-eval-align.png".format(step)),
title="{}, {}, step={}, loss={:.5f}".format("Tacotron",
time_string(),
step,
eval_loss),
max_len=t_len // hparams.outputs_per_step)
plot.plot_spectrogram(mel_p, os.path.join(eval_plot_dir,
"step-{"
"}-eval-mel-spectrogram.png".format(
step)),
title="{}, {}, step={}, loss={:.5f}".format("Tacotron",
time_string(),
step,
eval_loss),
target_spectrogram=mel_t,
max_len=t_len)
if hparams.predict_linear:
plot.plot_spectrogram(lin_p, os.path.join(eval_plot_dir,
"step-{}-eval-linear-spectrogram.png".format(
step)),
title="{}, {}, step={}, loss={:.5f}".format(
"Tacotron", time_string(), step, eval_loss),
target_spectrogram=lin_t,
max_len=t_len, auto_aspect=True)
log("Eval loss for global step {}: {:.3f}".format(step, eval_loss))
log("Writing eval summary!")
add_eval_stats(summary_writer, step, linear_loss, before_loss, after_loss,
stop_token_loss, eval_loss)
if step % args.checkpoint_interval == 0 or step == args.tacotron_train_steps or \
step == 300:
# Save model and current global step
saver.save(sess, checkpoint_fpath, global_step=global_step)
log("\nSaving alignment, Mel-Spectrograms and griffin-lim inverted waveform..")
input_seq, mel_prediction, alignment, target, target_length = sess.run([
model.tower_inputs[0][0],
model.tower_mel_outputs[0][0],
model.tower_alignments[0][0],
model.tower_mel_targets[0][0],
model.tower_targets_lengths[0][0],
])
# save predicted mel spectrogram to disk (debug)
mel_filename = "mel-prediction-step-{}.npy".format(step)
np.save(os.path.join(mel_dir, mel_filename), mel_prediction.T,
allow_pickle=False)
# save griffin lim inverted wav for debug (mel -> wav)
wav = audio.inv_mel_spectrogram(mel_prediction.T, hparams)
audio.save_wav(wav,
os.path.join(wav_dir, "step-{}-wave-from-mel.wav".format(step)),
sr=hparams.sample_rate)
# save alignment plot to disk (control purposes)
plot.plot_alignment(alignment,
os.path.join(plot_dir, "step-{}-align.png".format(step)),
title="{}, {}, step={}, loss={:.5f}".format("Tacotron",
time_string(),
step, loss),
max_len=target_length // hparams.outputs_per_step)
# save real and predicted mel-spectrogram plot to disk (control purposes)
plot.plot_spectrogram(mel_prediction, os.path.join(plot_dir,
"step-{}-mel-spectrogram.png".format(
step)),
title="{}, {}, step={}, loss={:.5f}".format("Tacotron",
time_string(),
step, loss),
target_spectrogram=target,
max_len=target_length)
log("Input at step {}: {}".format(step, sequence_to_text(input_seq)))
if step % args.embedding_interval == 0 or step == args.tacotron_train_steps or step == 1:
# Get current checkpoint state
checkpoint_state = tf.train.get_checkpoint_state(save_dir)
# Update Projector
log("\nSaving Model Character Embeddings visualization..")
add_embedding_stats(summary_writer, [model.embedding_table.name],
[char_embedding_meta],
checkpoint_state.model_checkpoint_path)
log("Tacotron Character embeddings have been updated on tensorboard!")
log("Tacotron training complete after {} global steps!".format(
args.tacotron_train_steps), slack=True)
return save_dir
except Exception as e:
log("Exiting due to exception: {}".format(e), slack=True)
traceback.print_exc()
coord.request_stop(e)
def tacotron_train(args, log_dir, hparams):
return train(log_dir, args, hparams)
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dvbvr/batch-ppo | ab0688eef8622a512b27206dfd4da095d7ddeb39 | # Copyright 2017 The TensorFlow Agents Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Batch of environments inside the TensorFlow graph."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import gym
import tensorflow as tf
class InGraphBatchEnv(object):
"""Batch of environments inside the TensorFlow graph.
The batch of environments will be stepped and reset inside of the graph using
a tf.py_func(). The current batch of observations, actions, rewards, and done
flags are held in according variables.
"""
def __init__(self, batch_env):
"""Batch of environments inside the TensorFlow graph.
Args:
batch_env: Batch environment.
"""
self._batch_env = batch_env
batch_dims = (len(self._batch_env),)
print('*~*' * 60)
observ_shape = self._parse_shape(self._batch_env.observation_space)
print(observ_shape)
observ_dtype = self._parse_dtype(self._batch_env.observation_space)
print(observ_dtype)
action_shape = self._parse_shape(self._batch_env.action_space)
print(action_shape)
action_dtype = self._parse_dtype(self._batch_env.action_space)
print(action_dtype)
with tf.variable_scope('env_temporary'):
self._observ = tf.Variable(
lambda: tf.zeros(batch_dims + observ_shape, observ_dtype),
name='observ', trainable=False)
self._action = tf.Variable(
lambda: tf.zeros(batch_dims + action_shape, action_dtype),
name='action', trainable=False)
self._reward = tf.Variable(
lambda: tf.zeros(batch_dims, tf.float32),
name='reward', trainable=False)
self._done = tf.Variable(
lambda: tf.cast(tf.ones(batch_dims), tf.bool),
name='done', trainable=False)
def __getattr__(self, name):
"""Forward unimplemented attributes to one of the original environments.
Args:
name: Attribute that was accessed.
Returns:
Value behind the attribute name in one of the original environments.
"""
return getattr(self._batch_env, name)
def __len__(self):
"""Number of combined environments."""
return len(self._batch_env)
def __getitem__(self, index):
"""Access an underlying environment by index."""
return self._batch_env[index]
def simulate(self, action):
"""Step the batch of environments.
The results of the step can be accessed from the variables defined below.
Args:
action: Tensor holding the batch of actions to apply.
Returns:
Operation.
"""
with tf.name_scope('environment/simulate'):
if action.dtype in (tf.float16, tf.float32, tf.float64):
action = tf.check_numerics(action, 'action')
observ_dtype = self._parse_dtype(self._batch_env.observation_space)
observ, reward, done = tf.py_func(
lambda a: self._batch_env.step(a)[:3], [action],
[observ_dtype, tf.float32, tf.bool], name='step')
observ = tf.check_numerics(observ, 'observ')
reward = tf.check_numerics(reward, 'reward')
return tf.group(
self._observ.assign(observ),
self._action.assign(action),
self._reward.assign(reward),
self._done.assign(done))
def reset(self, indices=None):
"""Reset the batch of environments.
Args:
indices: The batch indices of the environments to reset; defaults to all.
Returns:
Batch tensor of the new observations.
"""
if indices is None:
indices = tf.range(len(self._batch_env))
observ_dtype = self._parse_dtype(self._batch_env.observation_space)
observ = tf.py_func(
self._batch_env.reset, [indices], observ_dtype, name='reset')
observ = tf.check_numerics(observ, 'observ')
reward = tf.zeros_like(indices, tf.float32)
done = tf.zeros_like(indices, tf.bool)
with tf.control_dependencies([
tf.scatter_update(self._observ, indices, observ),
tf.scatter_update(self._reward, indices, reward),
tf.scatter_update(self._done, indices, done)]):
return tf.identity(observ)
@property
def observ(self):
"""Access the variable holding the current observation."""
return self._observ
@property
def action(self):
"""Access the variable holding the last received action."""
return self._action
@property
def reward(self):
"""Access the variable holding the current reward."""
return self._reward
@property
def done(self):
"""Access the variable indicating whether the episode is done."""
return self._done
def close(self):
"""Send close messages to the external process and join them."""
self._batch_env.close()
def _parse_shape(self, space):
"""Get a tensor shape from a OpenAI Gym space.
Args:
space: Gym space.
Raises:
NotImplementedError: For spaces other than Box and Discrete.
Returns:
Shape tuple.
"""
if isinstance(space, gym.spaces.Discrete):
return ()
if isinstance(space, gym.spaces.Box):
return space.shape
raise NotImplementedError()
def _parse_dtype(self, space):
"""Get a tensor dtype from a OpenAI Gym space.
Args:
space: Gym space.
Raises:
NotImplementedError: For spaces other than Box and Discrete.
Returns:
TensorFlow data type.
"""
if isinstance(space, gym.spaces.Discrete):
return tf.int32
if isinstance(space, gym.spaces.Box):
return tf.float32
raise NotImplementedError()
| [
"tensorflow.scatter_update",
"tensorflow.zeros",
"tensorflow.check_numerics",
"tensorflow.identity",
"tensorflow.ones",
"tensorflow.zeros_like",
"tensorflow.name_scope",
"tensorflow.variable_scope",
"tensorflow.py_func"
] | agents/tools/in_graph_batch_env.py | [(121, 'tensorflow.py_func', 'tf.py_func', (['self._batch_env.reset', '[indices]', 'observ_dtype'], {'name': '"""reset"""'}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.check_numerics', 'tf.check_numerics', (['observ', '"""observ"""'], {}), True, 'import tensorflow as tf\n'), (124, 'tensorflow.zeros_like', 'tf.zeros_like', (['indices', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (125, 'tensorflow.zeros_like', 'tf.zeros_like', (['indices', 'tf.bool'], {}), True, 'import tensorflow as tf\n'), (50, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""env_temporary"""'], {}), True, 'import tensorflow as tf\n'), (94, 'tensorflow.name_scope', 'tf.name_scope', (['"""environment/simulate"""'], {}), True, 'import tensorflow as tf\n'), (101, 'tensorflow.check_numerics', 'tf.check_numerics', (['observ', '"""observ"""'], {}), True, 'import tensorflow as tf\n'), (102, 'tensorflow.check_numerics', 'tf.check_numerics', (['reward', '"""reward"""'], {}), True, 'import tensorflow as tf\n'), (130, 'tensorflow.identity', 'tf.identity', (['observ'], {}), True, 'import tensorflow as tf\n'), (96, 'tensorflow.check_numerics', 'tf.check_numerics', (['action', '"""action"""'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.zeros', 'tf.zeros', (['(batch_dims + observ_shape)', 'observ_dtype'], {}), True, 'import tensorflow as tf\n'), (55, 'tensorflow.zeros', 'tf.zeros', (['(batch_dims + action_shape)', 'action_dtype'], {}), True, 'import tensorflow as tf\n'), (58, 'tensorflow.zeros', 'tf.zeros', (['batch_dims', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (127, 'tensorflow.scatter_update', 'tf.scatter_update', (['self._observ', 'indices', 'observ'], {}), True, 'import tensorflow as tf\n'), (128, 'tensorflow.scatter_update', 'tf.scatter_update', (['self._reward', 'indices', 'reward'], {}), True, 'import tensorflow as tf\n'), (129, 'tensorflow.scatter_update', 'tf.scatter_update', (['self._done', 'indices', 'done'], {}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.ones', 'tf.ones', (['batch_dims'], {}), True, 'import tensorflow as tf\n')] |
takanobu-watanabe/bert-japanese | c4ccf65c01f515b6de9ddece7b04c8bd61a4a262 | # coding=utf-8
# This file is based on https://github.com/google-research/bert/blob/master/run_classifier.py.
# It is changed to use SentencePiece tokenizer and https://www.rondhuit.com/download/ldcc-20140209.tar.gz.
"""BERT finetuning runner."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import collections
import configparser
import csv
import json
import os
import sys
import tempfile
import tokenization_sentencepiece as tokenization
import tensorflow as tf
import utils
CURDIR = os.path.dirname(os.path.abspath(__file__))
CONFIGPATH = os.path.join(CURDIR, os.pardir, 'config.ini')
config = configparser.ConfigParser()
config.read(CONFIGPATH)
bert_config_file = tempfile.NamedTemporaryFile(mode='w+t', encoding='utf-8', suffix='.json')
bert_config_file.write(json.dumps({k:utils.str_to_value(v) for k,v in config['BERT-CONFIG'].items()}))
bert_config_file.seek(0)
sys.path.append(os.path.join(CURDIR, os.pardir, 'bert'))
import modeling
import optimization
flags = tf.flags
FLAGS = flags.FLAGS
# Required parameters
flags.DEFINE_string(
"data_dir", None,
"The input data dir. Should contain the .tsv files (or other data files) "
"for the task.")
flags.DEFINE_string(
"bert_config_file", None,
"The config json file corresponding to the pre-trained BERT model. "
"This specifies the model architecture.")
flags.DEFINE_string("task_name", None, "The name of the task to train.")
flags.DEFINE_string("model_file", None,
"The model file that the SentencePiece model was trained on.")
flags.DEFINE_string("vocab_file", None,
"The vocabulary file that the BERT model was trained on.")
flags.DEFINE_string(
"output_dir", None,
"The output directory where the model checkpoints will be written.")
# Other parameters
flags.DEFINE_string(
"init_checkpoint", None,
"Initial checkpoint (usually from a pre-trained BERT model).")
flags.DEFINE_bool(
"do_lower_case", True,
"Whether to lower case the input text. Should be True for uncased "
"models and False for cased models.")
flags.DEFINE_integer(
"max_seq_length", 128,
"The maximum total input sequence length after WordPiece tokenization. "
"Sequences longer than this will be truncated, and sequences shorter "
"than this will be padded.")
flags.DEFINE_bool("do_train", False, "Whether to run training.")
flags.DEFINE_bool("do_eval", False, "Whether to run eval on the dev set.")
flags.DEFINE_bool(
"do_predict", False,
"Whether to run the model in inference mode on the test set.")
flags.DEFINE_integer("train_batch_size", 32, "Total batch size for training.")
flags.DEFINE_integer("eval_batch_size", 8, "Total batch size for eval.")
flags.DEFINE_integer("predict_batch_size", 8, "Total batch size for predict.")
flags.DEFINE_float("learning_rate", 5e-5, "The initial learning rate for Adam.")
flags.DEFINE_float("num_train_epochs", 3.0,
"Total number of training epochs to perform.")
flags.DEFINE_float(
"warmup_proportion", 0.1,
"Proportion of training to perform linear learning rate warmup for. "
"E.g., 0.1 = 10% of training.")
flags.DEFINE_integer("save_checkpoints_steps", 1000,
"How often to save the model checkpoint.")
flags.DEFINE_integer("iterations_per_loop", 1000,
"How many steps to make in each estimator call.")
flags.DEFINE_bool("use_tpu", False, "Whether to use TPU or GPU/CPU.")
tf.flags.DEFINE_string(
"tpu_name", None,
"The Cloud TPU to use for training. This should be either the name "
"used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 "
"url.")
tf.flags.DEFINE_string(
"tpu_zone", None,
"[Optional] GCE zone where the Cloud TPU is located in. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string(
"gcp_project", None,
"[Optional] Project name for the Cloud TPU-enabled project. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string("master", None, "[Optional] TensorFlow master URL.")
flags.DEFINE_integer(
"num_tpu_cores", 8,
"Only used if `use_tpu` is True. Total number of TPU cores to use.")
class InputExample(object):
"""A single training/test example for simple sequence classification."""
def __init__(self, guid, text_a, text_b=None, label=None):
"""Constructs a InputExample.
Args:
guid: Unique id for the example.
text_a: string. The untokenized text of the first sequence. For single
sequence tasks, only this sequence must be specified.
text_b: (Optional) string. The untokenized text of the second sequence.
Only must be specified for sequence pair tasks.
label: (Optional) string. The label of the example. This should be
specified for train and dev examples, but not for test examples.
"""
self.guid = guid
self.text_a = text_a
self.text_b = text_b
self.label = label
class PaddingInputExample(object):
"""Fake example so the num input examples is a multiple of the batch size.
When running eval/predict on the TPU, we need to pad the number of examples
to be a multiple of the batch size, because the TPU requires a fixed batch
size. The alternative is to drop the last batch, which is bad because it means
the entire output data won't be generated.
We use this class instead of `None` because treating `None` as padding
battches could cause silent errors.
"""
class InputFeatures(object):
"""A single set of features of data."""
def __init__(self,
input_ids,
input_mask,
segment_ids,
label_id,
is_real_example=True):
self.input_ids = input_ids
self.input_mask = input_mask
self.segment_ids = segment_ids
self.label_id = label_id
self.is_real_example = is_real_example
class DataProcessor(object):
"""Base class for data converters for sequence classification data sets."""
def get_train_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the train set."""
raise NotImplementedError()
def get_dev_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the dev set."""
raise NotImplementedError()
def get_test_examples(self, data_dir):
"""Gets a collection of `InputExample`s for prediction."""
raise NotImplementedError()
def get_labels(self):
"""Gets the list of labels for this data set."""
raise NotImplementedError()
@classmethod
def _read_tsv(cls, input_file, quotechar=None):
"""Reads a tab separated value file."""
with tf.gfile.Open(input_file, "r") as f:
reader = csv.reader(f, delimiter="\t", quotechar=quotechar)
lines = []
for line in reader:
lines.append(line)
return lines
@classmethod
def _read_csv(cls, input_file, quotechar=None):
"""Reads a tab separated value file."""
with tf.gfile.Open(input_file, "r") as f:
reader = csv.reader(f, delimiter=",")
lines = []
for line in reader:
lines.append(line)
return lines
class FAQProcessor(DataProcessor):
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_csv(os.path.join(data_dir, "train.csv")), "train")
def get_ev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_csv(os.path.join(data_dir, "dev.csv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_csv(os.path.join(data_dir, "test.csv")), "test")
def get_labels(self):
"""See base class."""
return ['0', '1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17', '18', '19', '20', '21', '22', '23', '24', '25', '26', '27', '28', '29', '30', '31', '32', '33', '34', '35', '36', '37', '38', '39', '40', '41', '42', '43', '44', '45', '46', '47', '48', '49', '50', '51', '52', '53', '54', '55', '56', '57', '58', '59', '60', '61', '62', '63', '64', '65', '66', '67', '68', '69', '70', '71', '72', '73', '74', '75', '76', '77', '78', '79', '80', '81', '82', '83', '84', '85', '86', '87', '88', '89', '90', '91', '92', '93', '94', '95', '96', '97', '98', '99', '100', '101', '102', '103', '104', '105', '106', '107', '108', '109', '110', '111', '112', '113', '114', '115', '116', '117', '118', '119', '120', '121', '122', '123', '124', '125', '126', '127', '128', '129', '130', '131', '132', '133', '134', '135', '136', '137', '138', '139', '140', '141', '142', '143', '144', '145', '146', '147', '148', '149', '150', '151', '152', '153', '154', '155', '156', '157', '158', '159', '160', '161', '162', '163', '164', '165', '166', '167', '168', '169', '170', '171', '172', '173', '174', '175', '176', '177', '178', '179', '180', '181', '182', '183', '184', '185', '186', '187', '188', '189', '190', '191', '192', '193', '194', '195', '196', '197', '198', '199', '200', '201', '202', '203', '204', '205', '206', '207', '208', '209', '210', '211', '212', '213', '214', '215', '216', '217', '218', '219', '220', '221', '222', '223', '224', '225', '226', '227', '228', '229', '230', '231', '232', '233', '234', '235', '236', '237', '238', '239', '240', '241', '242', '243', '244', '245', '246', '247', '248', '249', '250', '251', '252', '253', '254', '255', '256', '257', '258', '259', '260', '261', '262', '263', '264', '265', '266', '267', '268', '269', '270', '271', '272', '273', '274', '275', '276', '277', '278', '279', '280', '281', '282', '283', '284', '285', '286', '287', '288', '289', '290', '291', '292', '293', '294', '295', '296', '297', '298', '299', '300', '301', '302', '303', '304', '305', '306', '307', '308', '309', '310', '311', '312', '313', '314', '315', '316', '317', '318', '319', '320', '321', '322', '323', '324', '325', '326', '327', '328', '329', '330', '331', '332', '333', '334', '335', '336', '337', '338', '339', '340', '341', '342', '343', '344', '345', '346', '347', '348', '349', '350', '351', '352', '353', '354', '355', '356', '357', '358', '359', '360', '361', '362', '363', '364', '365', '366', '367', '368', '369', '370', '371', '372', '373', '374', '375', '376', '377', '378', '379', '380', '381', '382', '383', '384', '385', '386', '387', '388', '389', '390', '391', '392', '393', '394', '395', '396', '397', '398', '399', '400', '401', '402', '403', '404', '405', '406', '407', '408', '409', '410', '411', '412', '413', '414', '415', '416', '417', '418', '419', '420', '421', '422', '423', '424', '425', '426', '427', '428', '429', '430', '431', '432', '433', '434', '435', '436', '437', '438', '439', '440', '441', '442', '443', '444', '445', '446', '447', '448', '449', '450', '451', '452', '453', '454', '455', '456', '457', '458', '459', '460', '461', '462', '463', '464', '465', '466', '467', '468', '469', '470', '471', '472', '473', '474', '475', '476', '477', '478', '479', '480', '481', '482', '483', '484', '485', '486', '487', '488', '489', '490', '491', '492', '493', '494', '495', '496', '497', '498', '499', '500', '501', '502', '503', '504', '505', '506', '507', '508', '509', '510', '511', '512', '513', '514', '515', '516', '517', '518', '519', '520', '521', '522', '523', '524', '525', '526', '527', '528', '529', '530', '531', '532', '533', '534', '535', '536', '537', '538', '539', '540', '541', '542', '543', '544', '545', '546', '547', '548', '549', '550', '551', '552', '553', '554', '555', '556', '557', '558', '559', '560', '561', '562', '563', '564', '565', '566', '567', '568', '569', '570', '571', '572', '573', '574', '575', '576', '577', '578', '579', '580', '581', '582', '583', '584', '585', '586', '587', '588', '589', '590', '591', '592', '593', '594', '595', '596', '597', '598', '599', '600', '601', '602', '603', '604', '605', '606', '607', '608', '609', '610', '611', '612', '613', '614', '615', '616', '617', '618', '619', '620', '621', '622', '623', '624', '625', '626', '627', '628', '629', '630', '631', '632', '633', '634', '635', '636', '637', '638', '639', '640', '641', '642', '643', '644', '645', '646', '647', '648', '649', '650', '651', '652', '653', '654', '655', '656', '657', '658', '659', '660', '661', '662', '663', '664', '665', '666', '667', '668', '669', '670', '671', '672', '673', '674', '675', '676', '677', '678', '679', '680', '681', '682', '683', '684', '685', '686', '687', '688', '689', '690', '691', '692', '693', '694', '695', '696', '697', '698', '699', '700', '701', '702', '703', '704', '705', '706', '707', '708', '709', '710', '711', '712', '713', '714', '715', '716', '717', '718', '719', '720', '721', '722', '723', '724', '725', '726', '727', '728', '729', '730', '731', '732', '733', '734', '735', '736', '737', '738', '739', '740', '741', '742', '743', '744', '745', '746', '747', '748', '749', '750', '751', '752', '753', '754', '755', '756', '757', '758', '759', '760', '761', '762', '763', '764', '765', '766', '767', '768', '769', '770', '771', '772', '773', '774', '775', '776', '777', '778', '779', '780', '781', '782', '783', '784', '785', '786', '787', '788', '789', '790', '791', '792', '793', '794', '795', '796', '797', '798', '799', '800', '801', '802', '803', '804', '805', '806', '807', '808', '809', '810', '811', '812', '813', '814', '815', '816', '817', '818', '819', '820', '821', '822', '823', '824', '825', '826', '827', '828', '829', '830', '831', '832', '833', '834', '835', '836', '837', '838', '839', '840', '841', '842', '843', '844', '845', '846', '847', '848', '849', '850', '851', '852', '853', '854', '855', '856', '857', '858', '859', '860', '861', '862', '863', '864', '865', '866', '867', '868', '869', '870', '871', '872', '873', '874', '875', '876', '877', '878', '879', '880', '881', '882', '883', '884', '885', '886', '887', '888', '889', '890', '891', '892', '893', '894', '895', '896', '897', '898', '899', '900', '901', '902', '903', '904', '905', '906', '907', '908', '909', '910', '911', '912', '913', '914', '915', '916', '917', '918', '919', '920', '921', '922', '923', '924', '925', '926', '927', '928', '929', '930', '931', '932', '933', '934', '935', '936', '937', '938', '939', '940', '941', '942', '943', '944', '945', '946', '947', '948', '949', '950', '951', '952', '953', '954', '955', '956', '957', '958', '959', '960', '961', '962', '963', '964', '965', '966', '967', '968', '969', '970', '971', '972', '973', '974', '975', '976', '977', '978', '979', '980', '981', '982', '983', '984', '985', '986', '987', '988', '989', '990', '991', '992', '993', '994', '995', '996', '997', '998', '999', '1000', '1001', '1002', '1003', '1004', '1005', '1006', '1007', '1008', '1009', '1010', '1011', '1012', '1013', '1014', '1015', '1016', '1017', '1018', '1019', '1020', '1021', '1022', '1023', '1024', '1025', '1026', '1027', '1028', '1029', '1030', '1031', '1032', '1033', '1034', '1035', '1036', '1037', '1038', '1039', '1040', '1041', '1042', '1043', '1044', '1045', '1046', '1047', '1048', '1049', '1050', '1051', '1052', '1053', '1054', '1055', '1056', '1057', '1058', '1059', '1060', '1061', '1062', '1063', '1064', '1065', '1066', '1067', '1068', '1069', '1070', '1071', '1072', '1073', '1074', '1075', '1076', '1077', '1078', '1079', '1080', '1081', '1082', '1083', '1084', '1085', '1086', '1087', '1088', '1089', '1090', '1091', '1092', '1093', '1094', '1095', '1096', '1097', '1098', '1099', '1100', '1101', '1102', '1103', '1104', '1105', '1106', '1107', '1108', '1109', '1110', '1111', '1112', '1113', '1114', '1115', '1116', '1117', '1118', '1119', '1120', '1121', '1122', '1123', '1124', '1125', '1126', '1127', '1128', '1129', '1130', '1131', '1132', '1133', '1134', '1135', '1136', '1137', '1138', '1139', '1140', '1141', '1142', '1143', '1144', '1145', '1146', '1147', '1148', '1149', '1150', '1151', '1152', '1153', '1154', '1155', '1156', '1157', '1158', '1159', '1160', '1161', '1162', '1163', '1164', '1165', '1166', '1167', '1168', '1169', '1170', '1171', '1172', '1173', '1174', '1175', '1176', '1177', '1178', '1179', '1180', '1181', '1182', '1183', '1184', '1185', '1186', '1187', '1188', '1189', '1190', '1191', '1192', '1193', '1194', '1195', '1196', '1197', '1198', '1199', '1200', '1201', '1202', '1203', '1204', '1205', '1206', '1207', '1208', '1209', '1210', '1211', '1212', '1213', '1214', '1215', '1216', '1217', '1218', '1219', '1220', '1221', '1222', '1223', '1224', '1225', '1226', '1227', '1228', '1229', '1230', '1231', '1232', '1233', '1234', '1235', '1236', '1237', '1238', '1239', '1240', '1241', '1242', '1243', '1244', '1245', '1246', '1247', '1248', '1249', '1250', '1251', '1252', '1253', '1254', '1255', '1256', '1257', '1258', '1259', '1260', '1261', '1262', '1263', '1264', '1265', '1266', '1267', '1268', '1269', '1270', '1271', '1272', '1273', '1274', '1275', '1276', '1277', '1278', '1279', '1280', '1281', '1282', '1283', '1284', '1285', '1286', '1287', '1288', '1289', '1290', '1291', '1292', '1293', '1294', '1295', '1296', '1297', '1298', '1299', '1300', '1301', '1302', '1303', '1304', '1305', '1306', '1307', '1308', '1309', '1310', '1311', '1312', '1313', '1314', '1315', '1316', '1317', '1318', '1319', '1320', '1321', '1322', '1323', '1324', '1325', '1326', '1327', '1328', '1329', '1330', '1331', '1332', '1333', '1334', '1335', '1336', '1337', '1338', '1339', '1340', '1341', '1342', '1343', '1344', '1345', '1346', '1347', '1348', '1349', '1350', '1351', '1352', '1353', '1354', '1355', '1356', '1357', '1358', '1359', '1360', '1361', '1362', '1363', '1364', '1365', '1366', '1367', '1368', '1369', '1370', '1371', '1372', '1373', '1374', '1375', '1376', '1377', '1378', '1379', '1380', '1381', '1382', '1383', '1384', '1385', '1386', '1387', '1388', '1389', '1390', '1391', '1392', '1393', '1394', '1395', '1396', '1397', '1398', '1399', '1400', '1401', '1402', '1403', '1404', '1405', '1406', '1407', '1408', '1409', '1410', '1411', '1412', '1413', '1414', '1415', '1416', '1417', '1418', '1419', '1420', '1421', '1422', '1423', '1424', '1425', '1426', '1427', '1428', '1429', '1430', '1431', '1432', '1433', '1434', '1435', '1436', '1437', '1438', '1439', '1440', '1441', '1442', '1443', '1444', '1445', '1446', '1447', '1448', '1449', '1450', '1451', '1452', '1453', '1454', '1455', '1456', '1457', '1458', '1459', '1460', '1461', '1462', '1463', '1464', '1465', '1466', '1467', '1468', '1469', '1470', '1471', '1472', '1473', '1474', '1475', '1476', '1477', '1478', '1479', '1480', '1481', '1482', '1483', '1484', '1485', '1486', '1487', '1488', '1489', '1490', '1491', '1492', '1493', '1494', '1495', '1496', '1497', '1498', '1499', '1500', '1501', '1502', '1503', '1504', '1505', '1506', '1507', '1508', '1509', '1510', '1511', '1512', '1513', '1514', '1515', '1516', '1517', '1518', '1519', '1520', '1521', '1522', '1523', '1524', '1525', '1526', '1527', '1528', '1529', '1530', '1531', '1532', '1533', '1534', '1535', '1536', '1537', '1538', '1539', '1540', '1541', '1542', '1543', '1544', '1545', '1546', '1547', '1548', '1549', '1550', '1551', '1552', '1553', '1554', '1555', '1556', '1557', '1558', '1559', '1560', '1561', '1562', '1563', '1564', '1565', '1566', '1567', '1568', '1569', '1570', '1571', '1572', '1573', '1574', '1575', '1576', '1577', '1578', '1579', '1580', '1581', '1582', '1583', '1584', '1585', '1586', '1587', '1588', '1589', '1590', '1591', '1592', '1593', '1594', '1595', '1596', '1597', '1598', '1599', '1600', '1601', '1602', '1603', '1604', '1605', '1606', '1607', '1608', '1609', '1610', '1611', '1612', '1613', '1614', '1615', '1616', '1617', '1618', '1619', '1620', '1621', '1622', '1623', '1624', '1625', '1626', '1627', '1628', '1629', '1630', '1631', '1632', '1633', '1634', '1635', '1636', '1637', '1638', '1639', '1640', '1641', '1642', '1643', '1644', '1645', '1646', '1647', '1648', '1649', '1650', '1651', '1652', '1653', '1654', '1655', '1656', '1657', '1658', '1659', '1660', '1661', '1662', '1663', '1664', '1665', '1666', '1667', '1668', '1669', '1670', '1671', '1672', '1673', '1674', '1675', '1676', '1677', '1678', '1679', '1680', '1681', '1682', '1683', '1684', '1685', '1686', '1687', '1688', '1689', '1690', '1691', '1692', '1693', '1694', '1695', '1696', '1697', '1698', '1699', '1700', '1701', '1702', '1703', '1704', '1705', '1706', '1707', '1708', '1709', '1710', '1711', '1712', '1713', '1714', '1715', '1716', '1717', '1718', '1719', '1720', '1721', '1722', '1723', '1724', '1725', '1726', '1727', '1728', '1729', '1730', '1731', '1732', '1733', '1734', '1735', '1736', '1737', '1738', '1739', '1740', '1741', '1742', '1743', '1744', '1745', '1746', '1747', '1748', '1749', '1750', '1751', '1752', '1753', '1754', '1755', '1756', '1757', '1758', '1759', '1760', '1761', '1762', '1763', '1764', '1765', '1766', '1767', '1768', '1769', '1770', '1771', '1772', '1773', '1774', '1775', '1776', '1777', '1778', '1779', '1780', '1781', '1782', '1783', '1784', '1785']
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
if i == 0:
idx_text = line.index('text')
idx_label = line.index('label')
else:
guid = "%s-%s" % (set_type, i)
text_a = tokenization.convert_to_unicode(line[idx_text])
label = tokenization.convert_to_unicode(line[idx_label])
examples.append(
InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
return examples
class LivedoorProcessor(DataProcessor):
"""Processor for the livedoor data set (see https://www.rondhuit.com/download.html)."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")
def get_labels(self):
"""See base class."""
return ['dokujo-tsushin', 'it-life-hack', 'kaden-channel', 'livedoor-homme', 'movie-enter', 'peachy', 'smax', 'sports-watch', 'topic-news']
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
if i == 0:
idx_text = line.index('text')
idx_label = line.index('label')
else:
guid = "%s-%s" % (set_type, i)
text_a = tokenization.convert_to_unicode(line[idx_text])
label = tokenization.convert_to_unicode(line[idx_label])
examples.append(
InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
return examples
def convert_single_example(ex_index, example, label_list, max_seq_length,
tokenizer):
"""Converts a single `InputExample` into a single `InputFeatures`."""
if isinstance(example, PaddingInputExample):
return InputFeatures(
input_ids=[0] * max_seq_length,
input_mask=[0] * max_seq_length,
segment_ids=[0] * max_seq_length,
label_id=0,
is_real_example=False)
label_map = {}
for (i, label) in enumerate(label_list):
label_map[label] = i
tokens_a = tokenizer.tokenize(example.text_a)
tokens_b = None
if example.text_b:
tokens_b = tokenizer.tokenize(example.text_b)
if tokens_b:
# Modifies `tokens_a` and `tokens_b` in place so that the total
# length is less than the specified length.
# Account for [CLS], [SEP], [SEP] with "- 3"
_truncate_seq_pair(tokens_a, tokens_b, max_seq_length - 3)
else:
# Account for [CLS] and [SEP] with "- 2"
if len(tokens_a) > max_seq_length - 2:
tokens_a = tokens_a[0:(max_seq_length - 2)]
# The convention in BERT is:
# (a) For sequence pairs:
# tokens: [CLS] is this jack ##son ##ville ? [SEP] no it is not . [SEP]
# type_ids: 0 0 0 0 0 0 0 0 1 1 1 1 1 1
# (b) For single sequences:
# tokens: [CLS] the dog is hairy . [SEP]
# type_ids: 0 0 0 0 0 0 0
#
# Where "type_ids" are used to indicate whether this is the first
# sequence or the second sequence. The embedding vectors for `type=0` and
# `type=1` were learned during pre-training and are added to the wordpiece
# embedding vector (and position vector). This is not *strictly* necessary
# since the [SEP] token unambiguously separates the sequences, but it makes
# it easier for the model to learn the concept of sequences.
#
# For classification tasks, the first vector (corresponding to [CLS]) is
# used as the "sentence vector". Note that this only makes sense because
# the entire model is fine-tuned.
tokens = []
segment_ids = []
tokens.append("[CLS]")
segment_ids.append(0)
for token in tokens_a:
tokens.append(token)
segment_ids.append(0)
tokens.append("[SEP]")
segment_ids.append(0)
if tokens_b:
for token in tokens_b:
tokens.append(token)
segment_ids.append(1)
tokens.append("[SEP]")
segment_ids.append(1)
input_ids = tokenizer.convert_tokens_to_ids(tokens)
# The mask has 1 for real tokens and 0 for padding tokens. Only real
# tokens are attended to.
input_mask = [1] * len(input_ids)
# Zero-pad up to the sequence length.
while len(input_ids) < max_seq_length:
input_ids.append(0)
input_mask.append(0)
segment_ids.append(0)
assert len(input_ids) == max_seq_length
assert len(input_mask) == max_seq_length
assert len(segment_ids) == max_seq_length
label_id = label_map[example.label]
if ex_index < 5:
tf.logging.info("*** Example ***")
tf.logging.info("guid: %s" % (example.guid))
tf.logging.info("tokens: %s" % " ".join(
[tokenization.printable_text(x) for x in tokens]))
tf.logging.info("input_ids: %s" % " ".join([str(x) for x in input_ids]))
tf.logging.info("input_mask: %s" % " ".join([str(x) for x in input_mask]))
tf.logging.info("segment_ids: %s" % " ".join([str(x) for x in segment_ids]))
tf.logging.info("label: %s (id = %d)" % (example.label, label_id))
feature = InputFeatures(
input_ids=input_ids,
input_mask=input_mask,
segment_ids=segment_ids,
label_id=label_id,
is_real_example=True)
return feature
def file_based_convert_examples_to_features(
examples, label_list, max_seq_length, tokenizer, output_file):
"""Convert a set of `InputExample`s to a TFRecord file."""
writer = tf.python_io.TFRecordWriter(output_file)
for (ex_index, example) in enumerate(examples):
if ex_index % 10000 == 0:
tf.logging.info("Writing example %d of %d" % (ex_index, len(examples)))
feature = convert_single_example(ex_index, example, label_list,
max_seq_length, tokenizer)
def create_int_feature(values):
f = tf.train.Feature(int64_list=tf.train.Int64List(value=list(values)))
return f
features = collections.OrderedDict()
features["input_ids"] = create_int_feature(feature.input_ids)
features["input_mask"] = create_int_feature(feature.input_mask)
features["segment_ids"] = create_int_feature(feature.segment_ids)
features["label_ids"] = create_int_feature([feature.label_id])
features["is_real_example"] = create_int_feature(
[int(feature.is_real_example)])
tf_example = tf.train.Example(features=tf.train.Features(feature=features))
writer.write(tf_example.SerializeToString())
writer.close()
def file_based_input_fn_builder(input_file, seq_length, is_training,
drop_remainder):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
name_to_features = {
"input_ids": tf.FixedLenFeature([seq_length], tf.int64),
"input_mask": tf.FixedLenFeature([seq_length], tf.int64),
"segment_ids": tf.FixedLenFeature([seq_length], tf.int64),
"label_ids": tf.FixedLenFeature([], tf.int64),
"is_real_example": tf.FixedLenFeature([], tf.int64),
}
def _decode_record(record, name_to_features):
"""Decodes a record to a TensorFlow example."""
example = tf.parse_single_example(record, name_to_features)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name in list(example.keys()):
t = example[name]
if t.dtype == tf.int64:
t = tf.to_int32(t)
example[name] = t
return example
def input_fn(params):
"""The actual input function."""
batch_size = params["batch_size"]
# For training, we want a lot of parallel reading and shuffling.
# For eval, we want no shuffling and parallel reading doesn't matter.
d = tf.data.TFRecordDataset(input_file)
if is_training:
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.apply(
tf.contrib.data.map_and_batch(
lambda record: _decode_record(record, name_to_features),
batch_size=batch_size,
drop_remainder=drop_remainder))
return d
return input_fn
def _truncate_seq_pair(tokens_a, tokens_b, max_length):
"""Truncates a sequence pair in place to the maximum length."""
# This is a simple heuristic which will always truncate the longer sequence
# one token at a time. This makes more sense than truncating an equal percent
# of tokens from each, since if one sequence is very short then each token
# that's truncated likely contains more information than a longer sequence.
while True:
total_length = len(tokens_a) + len(tokens_b)
if total_length <= max_length:
break
if len(tokens_a) > len(tokens_b):
tokens_a.pop()
else:
tokens_b.pop()
def create_model(bert_config, is_training, input_ids, input_mask, segment_ids,
labels, num_labels, use_one_hot_embeddings):
"""Creates a classification model."""
model = modeling.BertModel(
config=bert_config,
is_training=is_training,
input_ids=input_ids,
input_mask=input_mask,
token_type_ids=segment_ids,
use_one_hot_embeddings=use_one_hot_embeddings)
# In the demo, we are doing a simple classification task on the entire
# segment.
#
# If you want to use the token-level output, use model.get_sequence_output()
# instead.
output_layer = model.get_pooled_output()
hidden_size = output_layer.shape[-1].value
output_weights = tf.get_variable(
"output_weights", [num_labels, hidden_size],
initializer=tf.truncated_normal_initializer(stddev=0.02))
output_bias = tf.get_variable(
"output_bias", [num_labels], initializer=tf.zeros_initializer())
with tf.variable_scope("loss"):
if is_training:
# I.e., 0.1 dropout
output_layer = tf.nn.dropout(output_layer, keep_prob=0.9)
logits = tf.matmul(output_layer, output_weights, transpose_b=True)
logits = tf.nn.bias_add(logits, output_bias)
probabilities = tf.nn.softmax(logits, axis=-1)
log_probs = tf.nn.log_softmax(logits, axis=-1)
one_hot_labels = tf.one_hot(labels, depth=num_labels, dtype=tf.float32)
per_example_loss = -tf.reduce_sum(one_hot_labels * log_probs, axis=-1)
loss = tf.reduce_mean(per_example_loss)
return (loss, per_example_loss, logits, probabilities)
def model_fn_builder(bert_config, num_labels, init_checkpoint, learning_rate,
num_train_steps, num_warmup_steps, use_tpu,
use_one_hot_embeddings):
"""Returns `model_fn` closure for TPUEstimator."""
def model_fn(features, labels, mode, params): # pylint: disable=unused-argument
"""The `model_fn` for TPUEstimator."""
tf.logging.info("*** Features ***")
for name in sorted(features.keys()):
tf.logging.info(" name = %s, shape = %s" % (name, features[name].shape))
input_ids = features["input_ids"]
input_mask = features["input_mask"]
segment_ids = features["segment_ids"]
label_ids = features["label_ids"]
is_real_example = None
if "is_real_example" in features:
is_real_example = tf.cast(features["is_real_example"], dtype=tf.float32)
else:
is_real_example = tf.ones(tf.shape(label_ids), dtype=tf.float32)
is_training = (mode == tf.estimator.ModeKeys.TRAIN)
(total_loss, per_example_loss, logits, probabilities) = create_model(
bert_config, is_training, input_ids, input_mask, segment_ids, label_ids,
num_labels, use_one_hot_embeddings)
tvars = tf.trainable_variables()
initialized_variable_names = {}
scaffold_fn = None
if init_checkpoint:
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
if use_tpu:
def tpu_scaffold():
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
return tf.train.Scaffold()
scaffold_fn = tpu_scaffold
else:
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
tf.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
tf.logging.info(" name = %s, shape = %s%s", var.name, var.shape,
init_string)
output_spec = None
if mode == tf.estimator.ModeKeys.TRAIN:
train_op = optimization.create_optimizer(
total_loss, learning_rate, num_train_steps, num_warmup_steps, use_tpu)
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
scaffold_fn=scaffold_fn)
elif mode == tf.estimator.ModeKeys.EVAL:
def metric_fn(per_example_loss, label_ids, logits, is_real_example):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
accuracy = tf.metrics.accuracy(
labels=label_ids, predictions=predictions, weights=is_real_example)
loss = tf.metrics.mean(values=per_example_loss, weights=is_real_example)
return {
"eval_accuracy": accuracy,
"eval_loss": loss,
}
eval_metrics = (metric_fn,
[per_example_loss, label_ids, logits, is_real_example])
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
eval_metrics=eval_metrics,
scaffold_fn=scaffold_fn)
else:
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
predictions={"probabilities": probabilities},
scaffold_fn=scaffold_fn)
return output_spec
return model_fn
# This function is not used by this file but is still used by the Colab and
# people who depend on it.
def input_fn_builder(features, seq_length, is_training, drop_remainder):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
all_input_ids = []
all_input_mask = []
all_segment_ids = []
all_label_ids = []
for feature in features:
all_input_ids.append(feature.input_ids)
all_input_mask.append(feature.input_mask)
all_segment_ids.append(feature.segment_ids)
all_label_ids.append(feature.label_id)
def input_fn(params):
"""The actual input function."""
batch_size = params["batch_size"]
num_examples = len(features)
# This is for demo purposes and does NOT scale to large data sets. We do
# not use Dataset.from_generator() because that uses tf.py_func which is
# not TPU compatible. The right way to load data is with TFRecordReader.
d = tf.data.Dataset.from_tensor_slices({
"input_ids":
tf.constant(
all_input_ids, shape=[num_examples, seq_length],
dtype=tf.int32),
"input_mask":
tf.constant(
all_input_mask,
shape=[num_examples, seq_length],
dtype=tf.int32),
"segment_ids":
tf.constant(
all_segment_ids,
shape=[num_examples, seq_length],
dtype=tf.int32),
"label_ids":
tf.constant(all_label_ids, shape=[num_examples], dtype=tf.int32),
})
if is_training:
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.batch(batch_size=batch_size, drop_remainder=drop_remainder)
return d
return input_fn
# This function is not used by this file but is still used by the Colab and
# people who depend on it.
def convert_examples_to_features(examples, label_list, max_seq_length,
tokenizer):
"""Convert a set of `InputExample`s to a list of `InputFeatures`."""
features = []
for (ex_index, example) in enumerate(examples):
if ex_index % 10000 == 0:
tf.logging.info("Writing example %d of %d" % (ex_index, len(examples)))
feature = convert_single_example(ex_index, example, label_list,
max_seq_length, tokenizer)
features.append(feature)
return features
def main(_):
tf.logging.set_verbosity(tf.logging.INFO)
processors = {
"faq": FAQProcessor,
}
tokenization.validate_case_matches_checkpoint(FLAGS.do_lower_case,
FLAGS.init_checkpoint)
if not FLAGS.do_train and not FLAGS.do_eval and not FLAGS.do_predict:
raise ValueError(
"At least one of `do_train`, `do_eval` or `do_predict' must be True.")
bert_config = modeling.BertConfig.from_json_file(bert_config_file.name)
if FLAGS.max_seq_length > bert_config.max_position_embeddings:
raise ValueError(
"Cannot use sequence length %d because the BERT model "
"was only trained up to sequence length %d" %
(FLAGS.max_seq_length, bert_config.max_position_embeddings))
tf.gfile.MakeDirs(FLAGS.output_dir)
task_name = FLAGS.task_name.lower()
if task_name not in processors:
raise ValueError("Task not found: %s" % (task_name))
processor = processors[task_name]()
label_list = processor.get_labels()
tokenizer = tokenization.FullTokenizer(
model_file=FLAGS.model_file, vocab_file=FLAGS.vocab_file,
do_lower_case=FLAGS.do_lower_case)
tpu_cluster_resolver = None
if FLAGS.use_tpu and FLAGS.tpu_name:
tpu_cluster_resolver = tf.contrib.cluster_resolver.TPUClusterResolver(
FLAGS.tpu_name, zone=FLAGS.tpu_zone, project=FLAGS.gcp_project)
is_per_host = tf.contrib.tpu.InputPipelineConfig.PER_HOST_V2
run_config = tf.contrib.tpu.RunConfig(
cluster=tpu_cluster_resolver,
master=FLAGS.master,
model_dir=FLAGS.output_dir,
save_checkpoints_steps=FLAGS.save_checkpoints_steps,
tpu_config=tf.contrib.tpu.TPUConfig(
iterations_per_loop=FLAGS.iterations_per_loop,
num_shards=FLAGS.num_tpu_cores,
per_host_input_for_training=is_per_host))
train_examples = None
num_train_steps = None
num_warmup_steps = None
if FLAGS.do_train:
train_examples = processor.get_train_examples(FLAGS.data_dir)
num_train_steps = int(
len(train_examples) / FLAGS.train_batch_size * FLAGS.num_train_epochs)
num_warmup_steps = int(num_train_steps * FLAGS.warmup_proportion)
model_fn = model_fn_builder(
bert_config=bert_config,
num_labels=len(label_list),
init_checkpoint=FLAGS.init_checkpoint,
learning_rate=FLAGS.learning_rate,
num_train_steps=num_train_steps,
num_warmup_steps=num_warmup_steps,
use_tpu=FLAGS.use_tpu,
use_one_hot_embeddings=FLAGS.use_tpu)
# If TPU is not available, this will fall back to normal Estimator on CPU
# or GPU.
estimator = tf.contrib.tpu.TPUEstimator(
use_tpu=FLAGS.use_tpu,
model_fn=model_fn,
config=run_config,
train_batch_size=FLAGS.train_batch_size,
eval_batch_size=FLAGS.eval_batch_size,
predict_batch_size=FLAGS.predict_batch_size)
if FLAGS.do_train:
train_file = os.path.join(FLAGS.output_dir, "train.tf_record")
file_based_convert_examples_to_features(
train_examples, label_list, FLAGS.max_seq_length, tokenizer, train_file)
tf.logging.info("***** Running training *****")
tf.logging.info(" Num examples = %d", len(train_examples))
tf.logging.info(" Batch size = %d", FLAGS.train_batch_size)
tf.logging.info(" Num steps = %d", num_train_steps)
train_input_fn = file_based_input_fn_builder(
input_file=train_file,
seq_length=FLAGS.max_seq_length,
is_training=True,
drop_remainder=True)
estimator.train(input_fn=train_input_fn, max_steps=num_train_steps)
if FLAGS.do_eval:
eval_examples = processor.get_dev_examples(FLAGS.data_dir)
num_actual_eval_examples = len(eval_examples)
if FLAGS.use_tpu:
# TPU requires a fixed batch size for all batches, therefore the number
# of examples must be a multiple of the batch size, or else examples
# will get dropped. So we pad with fake examples which are ignored
# later on. These do NOT count towards the metric (all tf.metrics
# support a per-instance weight, and these get a weight of 0.0).
while len(eval_examples) % FLAGS.eval_batch_size != 0:
eval_examples.append(PaddingInputExample())
eval_file = os.path.join(FLAGS.output_dir, "eval.tf_record")
file_based_convert_examples_to_features(
eval_examples, label_list, FLAGS.max_seq_length, tokenizer, eval_file)
tf.logging.info("***** Running evaluation *****")
tf.logging.info(" Num examples = %d (%d actual, %d padding)",
len(eval_examples), num_actual_eval_examples,
len(eval_examples) - num_actual_eval_examples)
tf.logging.info(" Batch size = %d", FLAGS.eval_batch_size)
# This tells the estimator to run through the entire set.
eval_steps = None
# However, if running eval on the TPU, you will need to specify the
# number of steps.
if FLAGS.use_tpu:
assert len(eval_examples) % FLAGS.eval_batch_size == 0
eval_steps = int(len(eval_examples) // FLAGS.eval_batch_size)
eval_drop_remainder = True if FLAGS.use_tpu else False
eval_input_fn = file_based_input_fn_builder(
input_file=eval_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=eval_drop_remainder)
result = estimator.evaluate(input_fn=eval_input_fn, steps=eval_steps)
output_eval_file = os.path.join(FLAGS.output_dir, "eval_results.txt")
with tf.gfile.GFile(output_eval_file, "w") as writer:
tf.logging.info("***** Eval results *****")
for key in sorted(result.keys()):
tf.logging.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
if FLAGS.do_predict:
predict_examples = processor.get_test_examples(FLAGS.data_dir)
num_actual_predict_examples = len(predict_examples)
if FLAGS.use_tpu:
# TPU requires a fixed batch size for all batches, therefore the number
# of examples must be a multiple of the batch size, or else examples
# will get dropped. So we pad with fake examples which are ignored
# later on.
while len(predict_examples) % FLAGS.predict_batch_size != 0:
predict_examples.append(PaddingInputExample())
predict_file = os.path.join(FLAGS.output_dir, "predict.tf_record")
file_based_convert_examples_to_features(predict_examples, label_list,
FLAGS.max_seq_length, tokenizer,
predict_file)
tf.logging.info("***** Running prediction*****")
tf.logging.info(" Num examples = %d (%d actual, %d padding)",
len(predict_examples), num_actual_predict_examples,
len(predict_examples) - num_actual_predict_examples)
tf.logging.info(" Batch size = %d", FLAGS.predict_batch_size)
predict_drop_remainder = True if FLAGS.use_tpu else False
predict_input_fn = file_based_input_fn_builder(
input_file=predict_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=predict_drop_remainder)
result = estimator.predict(input_fn=predict_input_fn)
output_predict_file = os.path.join(FLAGS.output_dir, "test_results.tsv")
with tf.gfile.GFile(output_predict_file, "w") as writer:
num_written_lines = 0
tf.logging.info("***** Predict results *****")
for (i, prediction) in enumerate(result):
probabilities = prediction["probabilities"]
if i >= num_actual_predict_examples:
break
output_line = "\t".join(
str(class_probability)
for class_probability in probabilities) + "\n"
writer.write(output_line)
num_written_lines += 1
assert num_written_lines == num_actual_predict_examples
if __name__ == "__main__":
flags.mark_flag_as_required("data_dir")
flags.mark_flag_as_required("task_name")
flags.mark_flag_as_required("model_file")
flags.mark_flag_as_required("vocab_file")
flags.mark_flag_as_required("output_dir")
tf.app.run()
| [
"tensorflow.contrib.cluster_resolver.TPUClusterResolver",
"tensorflow.metrics.accuracy",
"tensorflow.FixedLenFeature",
"tensorflow.nn.log_softmax",
"tensorflow.reduce_sum",
"tensorflow.gfile.GFile",
"tensorflow.cast",
"tensorflow.train.init_from_checkpoint",
"tensorflow.gfile.MakeDirs",
"tensorflow.to_int32",
"tensorflow.contrib.tpu.TPUEstimatorSpec",
"tensorflow.contrib.tpu.TPUEstimator",
"tensorflow.data.TFRecordDataset",
"tensorflow.truncated_normal_initializer",
"tensorflow.python_io.TFRecordWriter",
"tensorflow.logging.set_verbosity",
"tensorflow.trainable_variables",
"tensorflow.parse_single_example",
"tensorflow.argmax",
"tensorflow.app.run",
"tensorflow.nn.dropout",
"tensorflow.metrics.mean",
"tensorflow.matmul",
"tensorflow.gfile.Open",
"tensorflow.shape",
"tensorflow.zeros_initializer",
"tensorflow.logging.info",
"tensorflow.one_hot",
"tensorflow.contrib.tpu.TPUConfig",
"tensorflow.train.Features",
"tensorflow.nn.bias_add",
"tensorflow.nn.softmax",
"tensorflow.constant",
"tensorflow.train.Scaffold",
"tensorflow.reduce_mean",
"tensorflow.flags.DEFINE_string",
"tensorflow.variable_scope"
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prasys/embedding-as-service | b1691cbf1ea1df39c109ace18562c8dc332750ec | """doc."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os
import tensorflow as tf
from embedding_as_service.text.xlnet.models import modeling
import xlnet
def construct_scalar_host_call(
monitor_dict,
model_dir,
prefix="",
reduce_fn=None):
"""
Construct host calls to monitor training progress on TPUs.
"""
metric_names = list(monitor_dict.keys())
def host_call_fn(global_step, *args):
"""actual host call function."""
step = global_step[0]
with tf.contrib.summary.create_file_writer(
logdir=model_dir, filename_suffix=".host_call").as_default():
with tf.contrib.summary.always_record_summaries():
for i, name in enumerate(metric_names):
if reduce_fn is None:
scalar = args[i][0]
else:
scalar = reduce_fn(args[i])
with tf.contrib.summary.record_summaries_every_n_global_steps(
100, global_step=step):
tf.contrib.summary.scalar(prefix + name, scalar, step=step)
return tf.contrib.summary.all_summary_ops()
global_step_tensor = tf.reshape(tf.train.get_or_create_global_step(), [1])
other_tensors = [tf.reshape(monitor_dict[key], [1]) for key in metric_names]
return host_call_fn, [global_step_tensor] + other_tensors
def two_stream_loss(FLAGS, features, labels, mems, is_training):
"""Pretraining loss with two-stream attention Transformer-XL."""
#### Unpack input
mem_name = "mems"
mems = mems.get(mem_name, None)
inp_k = tf.transpose(features["input_k"], [1, 0])
inp_q = tf.transpose(features["input_q"], [1, 0])
seg_id = tf.transpose(features["seg_id"], [1, 0])
inp_mask = None
perm_mask = tf.transpose(features["perm_mask"], [1, 2, 0])
if FLAGS.num_predict is not None:
# [num_predict x tgt_len x bsz]
target_mapping = tf.transpose(features["target_mapping"], [1, 2, 0])
else:
target_mapping = None
# target for LM loss
tgt = tf.transpose(features["target"], [1, 0])
# target mask for LM loss
tgt_mask = tf.transpose(features["target_mask"], [1, 0])
# construct xlnet config and save to model_dir
xlnet_config = xlnet.XLNetConfig(FLAGS=FLAGS)
xlnet_config.to_json(os.path.join(FLAGS.model_dir, "config.json"))
# construct run config from FLAGS
run_config = xlnet.create_run_config(is_training, False, FLAGS)
xlnet_model = xlnet.XLNetModel(
xlnet_config=xlnet_config,
run_config=run_config,
input_ids=inp_k,
seg_ids=seg_id,
input_mask=inp_mask,
mems=mems,
perm_mask=perm_mask,
target_mapping=target_mapping,
inp_q=inp_q)
output = xlnet_model.get_sequence_output()
new_mems = {mem_name: xlnet_model.get_new_memory()}
lookup_table = xlnet_model.get_embedding_table()
initializer = xlnet_model.get_initializer()
with tf.variable_scope("model", reuse=tf.AUTO_REUSE):
# LM loss
lm_loss = modeling.lm_loss(
hidden=output,
target=tgt,
n_token=xlnet_config.n_token,
d_model=xlnet_config.d_model,
initializer=initializer,
lookup_table=lookup_table,
tie_weight=True,
bi_data=run_config.bi_data,
use_tpu=run_config.use_tpu)
#### Quantity to monitor
monitor_dict = {}
if FLAGS.use_bfloat16:
tgt_mask = tf.cast(tgt_mask, tf.float32)
lm_loss = tf.cast(lm_loss, tf.float32)
total_loss = tf.reduce_sum(lm_loss * tgt_mask) / tf.reduce_sum(tgt_mask)
monitor_dict["total_loss"] = total_loss
return total_loss, new_mems, monitor_dict
def get_loss(FLAGS, features, labels, mems, is_training):
"""Pretraining loss with two-stream attention Transformer-XL."""
if FLAGS.use_bfloat16:
with tf.tpu.bfloat16_scope():
return two_stream_loss(FLAGS, features, labels, mems, is_training)
else:
return two_stream_loss(FLAGS, features, labels, mems, is_training)
def get_classification_loss(
FLAGS, features, n_class, is_training):
"""Loss for downstream classification tasks."""
bsz_per_core = tf.shape(features["input_ids"])[0]
inp = tf.transpose(features["input_ids"], [1, 0])
seg_id = tf.transpose(features["segment_ids"], [1, 0])
inp_mask = tf.transpose(features["input_mask"], [1, 0])
label = tf.reshape(features["label_ids"], [bsz_per_core])
xlnet_config = xlnet.XLNetConfig(json_path=FLAGS.model_config_path)
run_config = xlnet.create_run_config(is_training, True, FLAGS)
xlnet_model = xlnet.XLNetModel(
xlnet_config=xlnet_config,
run_config=run_config,
input_ids=inp,
seg_ids=seg_id,
input_mask=inp_mask)
summary = xlnet_model.get_pooled_out(FLAGS.summary_type, FLAGS.use_summ_proj)
with tf.variable_scope("model", reuse=tf.AUTO_REUSE):
if FLAGS.cls_scope is not None and FLAGS.cls_scope:
cls_scope = "classification_{}".format(FLAGS.cls_scope)
else:
cls_scope = "classification_{}".format(FLAGS.task_name.lower())
per_example_loss, logits = modeling.classification_loss(
hidden=summary,
labels=label,
n_class=n_class,
initializer=xlnet_model.get_initializer(),
scope=cls_scope,
return_logits=True)
total_loss = tf.reduce_mean(per_example_loss)
return total_loss, per_example_loss, logits
def get_regression_loss(
FLAGS, features, is_training):
"""Loss for downstream regression tasks."""
bsz_per_core = tf.shape(features["input_ids"])[0]
inp = tf.transpose(features["input_ids"], [1, 0])
seg_id = tf.transpose(features["segment_ids"], [1, 0])
inp_mask = tf.transpose(features["input_mask"], [1, 0])
label = tf.reshape(features["label_ids"], [bsz_per_core])
xlnet_config = xlnet.XLNetConfig(json_path=FLAGS.model_config_path)
run_config = xlnet.create_run_config(is_training, True, FLAGS)
xlnet_model = xlnet.XLNetModel(
xlnet_config=xlnet_config,
run_config=run_config,
input_ids=inp,
seg_ids=seg_id,
input_mask=inp_mask)
summary = xlnet_model.get_pooled_out(FLAGS.summary_type, FLAGS.use_summ_proj)
with tf.variable_scope("model", reuse=tf.AUTO_REUSE):
per_example_loss, logits = modeling.regression_loss(
hidden=summary,
labels=label,
initializer=xlnet_model.get_initializer(),
scope="regression_{}".format(FLAGS.task_name.lower()),
return_logits=True)
total_loss = tf.reduce_mean(per_example_loss)
return total_loss, per_example_loss, logits
def get_qa_outputs(FLAGS, features, is_training):
"""Loss for downstream span-extraction QA tasks such as SQuAD."""
inp = tf.transpose(features["input_ids"], [1, 0])
seg_id = tf.transpose(features["segment_ids"], [1, 0])
inp_mask = tf.transpose(features["input_mask"], [1, 0])
cls_index = tf.reshape(features["cls_index"], [-1])
seq_len = tf.shape(inp)[0]
xlnet_config = xlnet.XLNetConfig(json_path=FLAGS.model_config_path)
run_config = xlnet.create_run_config(is_training, True, FLAGS)
xlnet_model = xlnet.XLNetModel(
xlnet_config=xlnet_config,
run_config=run_config,
input_ids=inp,
seg_ids=seg_id,
input_mask=inp_mask)
output = xlnet_model.get_sequence_output()
initializer = xlnet_model.get_initializer()
return_dict = {}
# invalid position mask such as query and special symbols (PAD, SEP, CLS)
p_mask = features["p_mask"]
# logit of the start position
with tf.variable_scope("start_logits"):
start_logits = tf.layers.dense(
output,
1,
kernel_initializer=initializer)
start_logits = tf.transpose(tf.squeeze(start_logits, -1), [1, 0])
start_logits_masked = start_logits * (1 - p_mask) - 1e30 * p_mask
start_log_probs = tf.nn.log_softmax(start_logits_masked, -1)
# logit of the end position
with tf.variable_scope("end_logits"):
if is_training:
# during training, compute the end logits based on the
# ground truth of the start position
start_positions = tf.reshape(features["start_positions"], [-1])
start_index = tf.one_hot(start_positions, depth=seq_len, axis=-1,
dtype=tf.float32)
start_features = tf.einsum("lbh,bl->bh", output, start_index)
start_features = tf.tile(start_features[None], [seq_len, 1, 1])
end_logits = tf.layers.dense(
tf.concat([output, start_features], axis=-1), xlnet_config.d_model,
kernel_initializer=initializer, activation=tf.tanh, name="dense_0")
end_logits = tf.contrib.layers.layer_norm(
end_logits, begin_norm_axis=-1)
end_logits = tf.layers.dense(
end_logits, 1,
kernel_initializer=initializer,
name="dense_1")
end_logits = tf.transpose(tf.squeeze(end_logits, -1), [1, 0])
end_logits_masked = end_logits * (1 - p_mask) - 1e30 * p_mask
end_log_probs = tf.nn.log_softmax(end_logits_masked, -1)
else:
# during inference, compute the end logits based on beam search
start_top_log_probs, start_top_index = tf.nn.top_k(
start_log_probs, k=FLAGS.start_n_top)
start_index = tf.one_hot(start_top_index,
depth=seq_len, axis=-1, dtype=tf.float32)
start_features = tf.einsum("lbh,bkl->bkh", output, start_index)
end_input = tf.tile(output[:, :, None],
[1, 1, FLAGS.start_n_top, 1])
start_features = tf.tile(start_features[None],
[seq_len, 1, 1, 1])
end_input = tf.concat([end_input, start_features], axis=-1)
end_logits = tf.layers.dense(
end_input,
xlnet_config.d_model,
kernel_initializer=initializer,
activation=tf.tanh,
name="dense_0")
end_logits = tf.contrib.layers.layer_norm(end_logits,
begin_norm_axis=-1)
end_logits = tf.layers.dense(
end_logits,
1,
kernel_initializer=initializer,
name="dense_1")
end_logits = tf.reshape(end_logits, [seq_len, -1, FLAGS.start_n_top])
end_logits = tf.transpose(end_logits, [1, 2, 0])
end_logits_masked = end_logits * (
1 - p_mask[:, None]) - 1e30 * p_mask[:, None]
end_log_probs = tf.nn.log_softmax(end_logits_masked, -1)
end_top_log_probs, end_top_index = tf.nn.top_k(
end_log_probs, k=FLAGS.end_n_top)
end_top_log_probs = tf.reshape(
end_top_log_probs,
[-1, FLAGS.start_n_top * FLAGS.end_n_top])
end_top_index = tf.reshape(
end_top_index,
[-1, FLAGS.start_n_top * FLAGS.end_n_top])
if is_training:
return_dict["start_log_probs"] = start_log_probs
return_dict["end_log_probs"] = end_log_probs
else:
return_dict["start_top_log_probs"] = start_top_log_probs
return_dict["start_top_index"] = start_top_index
return_dict["end_top_log_probs"] = end_top_log_probs
return_dict["end_top_index"] = end_top_index
# an additional layer to predict answerability
with tf.variable_scope("answer_class"):
# get the representation of CLS
cls_index = tf.one_hot(cls_index, seq_len, axis=-1, dtype=tf.float32)
cls_feature = tf.einsum("lbh,bl->bh", output, cls_index)
# get the representation of START
start_p = tf.nn.softmax(start_logits_masked, axis=-1,
name="softmax_start")
start_feature = tf.einsum("lbh,bl->bh", output, start_p)
# note(zhiliny): no dependency on end_feature so that we can obtain
# one single `cls_logits` for each sample
ans_feature = tf.concat([start_feature, cls_feature], -1)
ans_feature = tf.layers.dense(
ans_feature,
xlnet_config.d_model,
activation=tf.tanh,
kernel_initializer=initializer, name="dense_0")
ans_feature = tf.layers.dropout(ans_feature, FLAGS.dropout,
training=is_training)
cls_logits = tf.layers.dense(
ans_feature,
1,
kernel_initializer=initializer,
name="dense_1",
use_bias=False)
cls_logits = tf.squeeze(cls_logits, -1)
return_dict["cls_logits"] = cls_logits
return return_dict
def get_race_loss(FLAGS, features, is_training):
"""Loss for downstream multi-choice QA tasks such as RACE."""
bsz_per_core = tf.shape(features["input_ids"])[0]
def _transform_features(feature):
out = tf.reshape(feature, [bsz_per_core, 4, -1])
out = tf.transpose(out, [2, 0, 1])
out = tf.reshape(out, [-1, bsz_per_core * 4])
return out
inp = _transform_features(features["input_ids"])
seg_id = _transform_features(features["segment_ids"])
inp_mask = _transform_features(features["input_mask"])
label = tf.reshape(features["label_ids"], [bsz_per_core])
xlnet_config = xlnet.XLNetConfig(json_path=FLAGS.model_config_path)
run_config = xlnet.create_run_config(is_training, True, FLAGS)
xlnet_model = xlnet.XLNetModel(
xlnet_config=xlnet_config,
run_config=run_config,
input_ids=inp,
seg_ids=seg_id,
input_mask=inp_mask)
summary = xlnet_model.get_pooled_out(FLAGS.summary_type, FLAGS.use_summ_proj)
with tf.variable_scope("logits"):
logits = tf.layers.dense(summary, 1,
kernel_initializer=xlnet_model.get_initializer())
logits = tf.reshape(logits, [bsz_per_core, 4])
one_hot_target = tf.one_hot(label, 4)
per_example_loss = -tf.reduce_sum(
tf.nn.log_softmax(logits) * one_hot_target, -1)
total_loss = tf.reduce_mean(per_example_loss)
return total_loss, per_example_loss, logits
| [
"tensorflow.concat",
"tensorflow.nn.log_softmax",
"tensorflow.reduce_sum",
"tensorflow.layers.dropout",
"tensorflow.cast",
"tensorflow.contrib.summary.always_record_summaries",
"tensorflow.layers.dense",
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"tensorflow.reshape",
"tensorflow.einsum",
"tensorflow.contrib.layers.layer_norm",
"tensorflow.contrib.summary.scalar",
"tensorflow.variable_scope"
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returncode13/tensorflow | c5f94b10bbb30e525fa3ca313e7ccb173040c90a | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""TargetColumn abstract a single head in the model.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import inspect
import six
from tensorflow.contrib import losses
from tensorflow.contrib import metrics as metrics_lib
from tensorflow.python.framework import dtypes
from tensorflow.python.framework import ops
from tensorflow.python.ops import array_ops
from tensorflow.python.ops import logging_ops
from tensorflow.python.ops import math_ops
from tensorflow.python.ops import nn
def regression_target(label_name=None,
weight_column_name=None,
target_dimension=1):
"""Creates a _TargetColumn for linear regression.
Args:
label_name: String, name of the key in label dict. Can be null if label
is a tensor (single headed models).
weight_column_name: A string defining feature column name representing
weights. It is used to down weight or boost examples during training. It
will be multiplied by the loss of the example.
target_dimension: dimension of the target for multilabels.
Returns:
An instance of _TargetColumn
"""
return _RegressionTargetColumn(loss_fn=_mean_squared_loss,
label_name=label_name,
weight_column_name=weight_column_name,
target_dimension=target_dimension)
# TODO(zakaria): Add logistic_regression_target
def multi_class_target(n_classes, label_name=None, weight_column_name=None):
"""Creates a _TargetColumn for multi class single label classification.
The target column uses softmax cross entropy loss.
Args:
n_classes: Integer, number of classes, must be >= 2
label_name: String, name of the key in label dict. Can be null if label
is a tensor (single headed models).
weight_column_name: A string defining feature column name representing
weights. It is used to down weight or boost examples during training. It
will be multiplied by the loss of the example.
Returns:
An instance of _TargetColumn
Raises:
ValueError: if n_classes is < 2
"""
if n_classes < 2:
raise ValueError("n_classes must be > 1 for classification.")
if n_classes == 2:
loss_fn = _log_loss_with_two_classes
else:
loss_fn = _softmax_cross_entropy_loss
return _MultiClassTargetColumn(loss_fn=loss_fn,
n_classes=n_classes,
label_name=label_name,
weight_column_name=weight_column_name)
def binary_svm_target(label_name=None, weight_column_name=None):
"""Creates a _TargetColumn for binary classification with SVMs.
The target column uses binary hinge loss.
Args:
label_name: String, name of the key in label dict. Can be null if label
is a tensor (single headed models).
weight_column_name: A string defining feature column name representing
weights. It is used to down weight or boost examples during training. It
will be multiplied by the loss of the example.
Returns:
An instance of _TargetColumn.
"""
return _BinarySvmTargetColumn(label_name=label_name,
weight_column_name=weight_column_name)
class _TargetColumn(object):
"""_TargetColumn is the abstraction for a single head in a model.
Args:
loss_fn: a function that returns the loss tensor.
num_label_columns: Integer, number of label columns.
label_name: String, name of the key in label dict. Can be null if label
is a tensor (single headed models).
weight_column_name: A string defining feature column name representing
weights. It is used to down weight or boost examples during training. It
will be multiplied by the loss of the example.
Raises:
ValueError: if loss_fn or n_classes are missing.
"""
def __init__(self, loss_fn, num_label_columns, label_name,
weight_column_name):
if not loss_fn:
raise ValueError("loss_fn must be provided")
if num_label_columns is None: # n_classes can be 0
raise ValueError("num_label_columns must be provided")
self._loss_fn = loss_fn
self._num_label_columns = num_label_columns
self._label_name = label_name
self._weight_column_name = weight_column_name
def logits_to_predictions(self, logits, proba=False):
# Abstrat, Subclasses must implement.
raise NotImplementedError()
def get_eval_ops(self, features, logits, targets, metrics=None):
"""Returns eval op."""
raise NotImplementedError
@property
def label_name(self):
return self._label_name
@property
def weight_column_name(self):
return self._weight_column_name
@property
def num_label_columns(self):
return self._num_label_columns
def get_weight_tensor(self, features):
if not self._weight_column_name:
return None
else:
return array_ops.reshape(
math_ops.to_float(features[self._weight_column_name]),
shape=(-1,))
def loss(self, logits, target, features):
"""Returns loss tensor for this head.
Args:
logits: logits, a float tensor.
target: either a tensor for labels or in multihead case, a dict of string
to target tensor.
features: features dict.
Returns:
Loss tensor.
"""
target = target[self.name] if isinstance(target, dict) else target
loss_unweighted = self._loss_fn(logits, target)
weight_tensor = self.get_weight_tensor(features)
if weight_tensor is None:
return math_ops.reduce_mean(loss_unweighted, name="loss")
else:
loss_unweighted = array_ops.reshape(loss_unweighted, shape=(-1,))
loss_weighted = math_ops.mul(
loss_unweighted,
array_ops.reshape(weight_tensor, shape=(-1,)))
return math_ops.div(
math_ops.reduce_sum(loss_weighted),
math_ops.to_float(math_ops.reduce_sum(weight_tensor)),
name="loss")
class _RegressionTargetColumn(_TargetColumn):
"""_TargetColumn for regression."""
def __init__(self, loss_fn, label_name, weight_column_name, target_dimension):
super(_RegressionTargetColumn, self).__init__(
loss_fn=loss_fn,
num_label_columns=target_dimension,
label_name=label_name,
weight_column_name=weight_column_name)
def logits_to_predictions(self, logits, proba=False):
if self.num_label_columns == 1:
return array_ops.squeeze(logits, squeeze_dims=[1])
return logits
def get_eval_ops(self, features, logits, targets, metrics=None):
loss = self.loss(logits, targets, features)
result = {"loss": metrics_lib.streaming_mean(loss)}
if metrics:
predictions = self.logits_to_predictions(logits, proba=False)
result.update(_run_metrics(predictions, targets, metrics,
self.get_weight_tensor(features)))
return result
class _MultiClassTargetColumn(_TargetColumn):
"""_TargetColumn for classification."""
# TODO(zakaria): support multilabel.
def __init__(self, loss_fn, n_classes, label_name, weight_column_name):
if n_classes < 2:
raise ValueError("n_classes must be >= 2")
super(_MultiClassTargetColumn, self).__init__(
loss_fn=loss_fn,
num_label_columns=1 if n_classes == 2 else n_classes,
label_name=label_name,
weight_column_name=weight_column_name)
def logits_to_predictions(self, logits, proba=False):
if self.num_label_columns == 1:
logits = array_ops.concat(1, [array_ops.zeros_like(logits), logits])
if proba:
return nn.softmax(logits)
else:
return math_ops.argmax(logits, 1)
def _default_eval_metrics(self):
if self._num_label_columns == 1:
return _get_default_binary_metrics_for_eval(thresholds=[.5])
return {}
def get_eval_ops(self, features, logits, targets, metrics=None):
loss = self.loss(logits, targets, features)
result = {"loss": metrics_lib.streaming_mean(loss)}
# Adds default metrics.
if metrics is None:
# TODO(b/29366811): This currently results in both an "accuracy" and an
# "accuracy/threshold_0.500000_mean" metric for binary classification.
metrics = {("accuracy", "classes"): metrics_lib.streaming_accuracy}
predictions = math_ops.sigmoid(logits)
targets_float = math_ops.to_float(targets)
default_metrics = self._default_eval_metrics()
for metric_name, metric_op in default_metrics.items():
result[metric_name] = metric_op(predictions, targets_float)
class_metrics = {}
proba_metrics = {}
for name, metric_op in six.iteritems(metrics):
if isinstance(name, tuple):
if len(name) != 2:
raise ValueError("Ignoring metric {}. It returned a tuple with "
"len {}, expected 2.".format(name, len(name)))
else:
if name[1] not in ["classes", "probabilities"]:
raise ValueError("Ignoring metric {}. The 2nd element of its "
"name should be either 'classes' or "
"'probabilities'.".format(name))
elif name[1] == "classes":
class_metrics[name[0]] = metric_op
else:
proba_metrics[name[0]] = metric_op
elif isinstance(name, str):
class_metrics[name] = metric_op
else:
raise ValueError("Ignoring metric {}. Its name is not in the correct "
"form.".format(name))
if class_metrics:
class_predictions = self.logits_to_predictions(logits, proba=False)
result.update(_run_metrics(class_predictions, targets, class_metrics,
self.get_weight_tensor(features)))
if proba_metrics:
predictions = self.logits_to_predictions(logits, proba=True)
result.update(_run_metrics(predictions, targets, proba_metrics,
self.get_weight_tensor(features)))
return result
class _BinarySvmTargetColumn(_MultiClassTargetColumn):
"""_TargetColumn for binary classification using SVMs."""
def __init__(self, label_name, weight_column_name):
def loss_fn(logits, target):
check_shape_op = logging_ops.Assert(
math_ops.less_equal(array_ops.rank(target), 2),
["target's shape should be either [batch_size, 1] or [batch_size]"])
with ops.control_dependencies([check_shape_op]):
target = array_ops.reshape(
target, shape=[array_ops.shape(target)[0], 1])
return losses.hinge_loss(logits, target)
super(_BinarySvmTargetColumn, self).__init__(
loss_fn=loss_fn,
n_classes=2,
label_name=label_name,
weight_column_name=weight_column_name)
def logits_to_predictions(self, logits, proba=False):
if proba:
raise ValueError(
"logits to probabilities is not supported for _BinarySvmTargetColumn")
logits = array_ops.concat(1, [array_ops.zeros_like(logits), logits])
return math_ops.argmax(logits, 1)
# TODO(zakaria): use contrib losses.
def _mean_squared_loss(logits, target):
# To prevent broadcasting inside "-".
if len(target.get_shape()) == 1:
target = array_ops.expand_dims(target, dim=[1])
logits.get_shape().assert_is_compatible_with(target.get_shape())
return math_ops.square(logits - math_ops.to_float(target))
def _log_loss_with_two_classes(logits, target):
# sigmoid_cross_entropy_with_logits requires [batch_size, 1] target.
if len(target.get_shape()) == 1:
target = array_ops.expand_dims(target, dim=[1])
loss_vec = nn.sigmoid_cross_entropy_with_logits(logits,
math_ops.to_float(target))
return loss_vec
def _softmax_cross_entropy_loss(logits, target):
# sigmoid_cross_entropy_with_logits requires [batch_size, 1] target.
# Check that we got int32/int64 for classification.
if (not target.dtype.is_compatible_with(dtypes.int64) and
not target.dtype.is_compatible_with(dtypes.int32)):
raise ValueError("Target's dtype should be int32, int64 or compatible. "
"Instead got %s." % target.dtype)
# sparse_softmax_cross_entropy_with_logits requires [batch_size] target.
if len(target.get_shape()) == 2:
target = array_ops.squeeze(target, squeeze_dims=[1])
loss_vec = nn.sparse_softmax_cross_entropy_with_logits(logits, target)
return loss_vec
def _run_metrics(predictions, targets, metrics, weights):
result = {}
targets = math_ops.cast(targets, predictions.dtype)
for name, metric in six.iteritems(metrics or {}):
if "weights" in inspect.getargspec(metric)[0]:
result[name] = metric(predictions, targets, weights=weights)
else:
result[name] = metric(predictions, targets)
return result
def _get_default_binary_metrics_for_eval(thresholds):
"""Returns a dictionary of basic metrics for logistic regression.
Args:
thresholds: List of floating point thresholds to use for accuracy,
precision, and recall metrics. If None, defaults to [0.5].
Returns:
Dictionary mapping metrics string names to metrics functions.
"""
metrics = {}
metrics[_MetricKeys.PREDICTION_MEAN] = _predictions_streaming_mean
metrics[_MetricKeys.TARGET_MEAN] = _targets_streaming_mean
# Also include the streaming mean of the label as an accuracy baseline, as
# a reminder to users.
metrics[_MetricKeys.ACCURACY_BASELINE] = _targets_streaming_mean
metrics[_MetricKeys.AUC] = metrics_lib.streaming_auc
for threshold in thresholds:
metrics[_MetricKeys.ACCURACY_MEAN % threshold] = _streaming_with_threshold(
metrics_lib.streaming_accuracy, threshold)
# Precision for positive examples.
metrics[_MetricKeys.PRECISION_MEAN % threshold] = _streaming_with_threshold(
metrics_lib.streaming_precision, threshold)
# Recall for positive examples.
metrics[_MetricKeys.RECALL_MEAN % threshold] = _streaming_with_threshold(
metrics_lib.streaming_recall, threshold)
return metrics
# TODO(zakaria): support weights.
def _targets_streaming_mean(unused_predictions, targets):
return metrics_lib.streaming_mean(targets)
def _predictions_streaming_mean(predictions, unused_targets):
return metrics_lib.streaming_mean(predictions)
def _streaming_with_threshold(streaming_metrics_fn, threshold):
def _streaming_metrics(predictions, targets):
return streaming_metrics_fn(predictions=math_ops.to_float(
math_ops.greater_equal(predictions, threshold)),
labels=targets)
return _streaming_metrics
class _MetricKeys(object):
AUC = "auc"
PREDICTION_MEAN = "labels/prediction_mean"
TARGET_MEAN = "labels/actual_target_mean"
ACCURACY_BASELINE = "accuracy/baseline_target_mean"
ACCURACY_MEAN = "accuracy/threshold_%f_mean"
PRECISION_MEAN = "precision/positive_threshold_%f_mean"
RECALL_MEAN = "recall/positive_threshold_%f_mean"
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"tensorflow.python.ops.nn.softmax",
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"tensorflow.python.ops.array_ops.expand_dims",
"tensorflow.python.ops.nn.sparse_softmax_cross_entropy_with_logits",
"tensorflow.python.ops.math_ops.cast"
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RangK/models | a1ce90442e3205b82ffca3badd3c65408f4450cb | # Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""Model input function for tf-learn object detection model."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import functools
import tensorflow as tf
from object_detection.builders import dataset_builder
from object_detection.builders import image_resizer_builder
from object_detection.builders import model_builder
from object_detection.builders import preprocessor_builder
from object_detection.core import preprocessor
from object_detection.core import standard_fields as fields
from object_detection.data_decoders import tf_example_decoder
from object_detection.protos import eval_pb2
from object_detection.protos import input_reader_pb2
from object_detection.protos import model_pb2
from object_detection.protos import train_pb2
from object_detection.utils import config_util
from object_detection.utils import ops as util_ops
from object_detection.utils import shape_utils
HASH_KEY = 'hash'
HASH_BINS = 1 << 31
SERVING_FED_EXAMPLE_KEY = 'serialized_example'
# A map of names to methods that help build the input pipeline.
INPUT_BUILDER_UTIL_MAP = {
'dataset_build': dataset_builder.build,
'model_build': model_builder.build,
}
def transform_input_data(tensor_dict,
model_preprocess_fn,
image_resizer_fn,
num_classes,
data_augmentation_fn=None,
merge_multiple_boxes=False,
retain_original_image=False,
use_multiclass_scores=False,
use_bfloat16=False):
"""A single function that is responsible for all input data transformations.
Data transformation functions are applied in the following order.
1. If key fields.InputDataFields.image_additional_channels is present in
tensor_dict, the additional channels will be merged into
fields.InputDataFields.image.
2. data_augmentation_fn (optional): applied on tensor_dict.
3. model_preprocess_fn: applied only on image tensor in tensor_dict.
4. image_resizer_fn: applied on original image and instance mask tensor in
tensor_dict.
5. one_hot_encoding: applied to classes tensor in tensor_dict.
6. merge_multiple_boxes (optional): when groundtruth boxes are exactly the
same they can be merged into a single box with an associated k-hot class
label.
Args:
tensor_dict: dictionary containing input tensors keyed by
fields.InputDataFields.
model_preprocess_fn: model's preprocess function to apply on image tensor.
This function must take in a 4-D float tensor and return a 4-D preprocess
float tensor and a tensor containing the true image shape.
image_resizer_fn: image resizer function to apply on groundtruth instance
`masks. This function must take a 3-D float tensor of an image and a 3-D
tensor of instance masks and return a resized version of these along with
the true shapes.
num_classes: number of max classes to one-hot (or k-hot) encode the class
labels.
data_augmentation_fn: (optional) data augmentation function to apply on
input `tensor_dict`.
merge_multiple_boxes: (optional) whether to merge multiple groundtruth boxes
and classes for a given image if the boxes are exactly the same.
retain_original_image: (optional) whether to retain original image in the
output dictionary.
use_multiclass_scores: whether to use multiclass scores as
class targets instead of one-hot encoding of `groundtruth_classes`.
use_bfloat16: (optional) a bool, whether to use bfloat16 in training.
Returns:
A dictionary keyed by fields.InputDataFields containing the tensors obtained
after applying all the transformations.
"""
# Reshape flattened multiclass scores tensor into a 2D tensor of shape
# [num_boxes, num_classes].
if fields.InputDataFields.multiclass_scores in tensor_dict:
tensor_dict[fields.InputDataFields.multiclass_scores] = tf.reshape(
tensor_dict[fields.InputDataFields.multiclass_scores], [
tf.shape(tensor_dict[fields.InputDataFields.groundtruth_boxes])[0],
num_classes
])
if fields.InputDataFields.groundtruth_boxes in tensor_dict:
tensor_dict = util_ops.filter_groundtruth_with_nan_box_coordinates(
tensor_dict)
tensor_dict = util_ops.filter_unrecognized_classes(tensor_dict)
if retain_original_image:
tensor_dict[fields.InputDataFields.original_image] = tf.cast(
image_resizer_fn(tensor_dict[fields.InputDataFields.image], None)[0],
tf.uint8)
if fields.InputDataFields.image_additional_channels in tensor_dict:
channels = tensor_dict[fields.InputDataFields.image_additional_channels]
tensor_dict[fields.InputDataFields.image] = tf.concat(
[tensor_dict[fields.InputDataFields.image], channels], axis=2)
# Apply data augmentation ops.
if data_augmentation_fn is not None:
tensor_dict = data_augmentation_fn(tensor_dict)
# Apply model preprocessing ops and resize instance masks.
image = tensor_dict[fields.InputDataFields.image]
preprocessed_resized_image, true_image_shape = model_preprocess_fn(
tf.expand_dims(tf.cast(image, dtype=tf.float32), axis=0))
if use_bfloat16:
preprocessed_resized_image = tf.cast(
preprocessed_resized_image, tf.bfloat16)
tensor_dict[fields.InputDataFields.image] = tf.squeeze(
preprocessed_resized_image, axis=0)
tensor_dict[fields.InputDataFields.true_image_shape] = tf.squeeze(
true_image_shape, axis=0)
if fields.InputDataFields.groundtruth_instance_masks in tensor_dict:
masks = tensor_dict[fields.InputDataFields.groundtruth_instance_masks]
_, resized_masks, _ = image_resizer_fn(image, masks)
if use_bfloat16:
resized_masks = tf.cast(resized_masks, tf.bfloat16)
tensor_dict[fields.InputDataFields.
groundtruth_instance_masks] = resized_masks
# Transform groundtruth classes to one hot encodings.
label_offset = 1
zero_indexed_groundtruth_classes = tensor_dict[
fields.InputDataFields.groundtruth_classes] - label_offset
tensor_dict[fields.InputDataFields.groundtruth_classes] = tf.one_hot(
zero_indexed_groundtruth_classes, num_classes)
if use_multiclass_scores:
tensor_dict[fields.InputDataFields.groundtruth_classes] = tensor_dict[
fields.InputDataFields.multiclass_scores]
tensor_dict.pop(fields.InputDataFields.multiclass_scores, None)
if fields.InputDataFields.groundtruth_confidences in tensor_dict:
groundtruth_confidences = tensor_dict[
fields.InputDataFields.groundtruth_confidences]
# Map the confidences to the one-hot encoding of classes
tensor_dict[fields.InputDataFields.groundtruth_confidences] = (
tf.reshape(groundtruth_confidences, [-1, 1]) *
tensor_dict[fields.InputDataFields.groundtruth_classes])
else:
groundtruth_confidences = tf.ones_like(
zero_indexed_groundtruth_classes, dtype=tf.float32)
tensor_dict[fields.InputDataFields.groundtruth_confidences] = (
tensor_dict[fields.InputDataFields.groundtruth_classes])
if merge_multiple_boxes:
merged_boxes, merged_classes, merged_confidences, _ = (
util_ops.merge_boxes_with_multiple_labels(
tensor_dict[fields.InputDataFields.groundtruth_boxes],
zero_indexed_groundtruth_classes,
groundtruth_confidences,
num_classes))
merged_classes = tf.cast(merged_classes, tf.float32)
tensor_dict[fields.InputDataFields.groundtruth_boxes] = merged_boxes
tensor_dict[fields.InputDataFields.groundtruth_classes] = merged_classes
tensor_dict[fields.InputDataFields.groundtruth_confidences] = (
merged_confidences)
if fields.InputDataFields.groundtruth_boxes in tensor_dict:
tensor_dict[fields.InputDataFields.num_groundtruth_boxes] = tf.shape(
tensor_dict[fields.InputDataFields.groundtruth_boxes])[0]
return tensor_dict
def pad_input_data_to_static_shapes(tensor_dict, max_num_boxes, num_classes,
spatial_image_shape=None):
"""Pads input tensors to static shapes.
In case num_additional_channels > 0, we assume that the additional channels
have already been concatenated to the base image.
Args:
tensor_dict: Tensor dictionary of input data
max_num_boxes: Max number of groundtruth boxes needed to compute shapes for
padding.
num_classes: Number of classes in the dataset needed to compute shapes for
padding.
spatial_image_shape: A list of two integers of the form [height, width]
containing expected spatial shape of the image.
Returns:
A dictionary keyed by fields.InputDataFields containing padding shapes for
tensors in the dataset.
Raises:
ValueError: If groundtruth classes is neither rank 1 nor rank 2, or if we
detect that additional channels have not been concatenated yet.
"""
if not spatial_image_shape or spatial_image_shape == [-1, -1]:
height, width = None, None
else:
height, width = spatial_image_shape # pylint: disable=unpacking-non-sequence
num_additional_channels = 0
if fields.InputDataFields.image_additional_channels in tensor_dict:
num_additional_channels = shape_utils.get_dim_as_int(tensor_dict[
fields.InputDataFields.image_additional_channels].shape[2])
# We assume that if num_additional_channels > 0, then it has already been
# concatenated to the base image (but not the ground truth).
num_channels = 3
if fields.InputDataFields.image in tensor_dict:
num_channels = shape_utils.get_dim_as_int(
tensor_dict[fields.InputDataFields.image].shape[2])
if num_additional_channels:
if num_additional_channels >= num_channels:
raise ValueError(
'Image must be already concatenated with additional channels.')
if (fields.InputDataFields.original_image in tensor_dict and
shape_utils.get_dim_as_int(
tensor_dict[fields.InputDataFields.original_image].shape[2]) ==
num_channels):
raise ValueError(
'Image must be already concatenated with additional channels.')
padding_shapes = {
fields.InputDataFields.image: [
height, width, num_channels
],
fields.InputDataFields.original_image_spatial_shape: [2],
fields.InputDataFields.image_additional_channels: [
height, width, num_additional_channels
],
fields.InputDataFields.source_id: [],
fields.InputDataFields.filename: [],
fields.InputDataFields.key: [],
fields.InputDataFields.groundtruth_difficult: [max_num_boxes],
fields.InputDataFields.groundtruth_boxes: [max_num_boxes, 4],
fields.InputDataFields.groundtruth_classes: [max_num_boxes, num_classes],
fields.InputDataFields.groundtruth_instance_masks: [
max_num_boxes, height, width
],
fields.InputDataFields.groundtruth_is_crowd: [max_num_boxes],
fields.InputDataFields.groundtruth_group_of: [max_num_boxes],
fields.InputDataFields.groundtruth_area: [max_num_boxes],
fields.InputDataFields.groundtruth_weights: [max_num_boxes],
fields.InputDataFields.groundtruth_confidences: [
max_num_boxes, num_classes
],
fields.InputDataFields.num_groundtruth_boxes: [],
fields.InputDataFields.groundtruth_label_types: [max_num_boxes],
fields.InputDataFields.groundtruth_label_weights: [max_num_boxes],
fields.InputDataFields.true_image_shape: [3],
fields.InputDataFields.groundtruth_image_classes: [num_classes],
fields.InputDataFields.groundtruth_image_confidences: [num_classes],
}
if fields.InputDataFields.original_image in tensor_dict:
padding_shapes[fields.InputDataFields.original_image] = [
height, width,
shape_utils.get_dim_as_int(tensor_dict[fields.InputDataFields.
original_image].shape[2])
]
if fields.InputDataFields.groundtruth_keypoints in tensor_dict:
tensor_shape = (
tensor_dict[fields.InputDataFields.groundtruth_keypoints].shape)
padding_shape = [max_num_boxes,
shape_utils.get_dim_as_int(tensor_shape[1]),
shape_utils.get_dim_as_int(tensor_shape[2])]
padding_shapes[fields.InputDataFields.groundtruth_keypoints] = padding_shape
if fields.InputDataFields.groundtruth_keypoint_visibilities in tensor_dict:
tensor_shape = tensor_dict[fields.InputDataFields.
groundtruth_keypoint_visibilities].shape
padding_shape = [max_num_boxes, shape_utils.get_dim_as_int(tensor_shape[1])]
padding_shapes[fields.InputDataFields.
groundtruth_keypoint_visibilities] = padding_shape
padded_tensor_dict = {}
for tensor_name in tensor_dict:
padded_tensor_dict[tensor_name] = shape_utils.pad_or_clip_nd(
tensor_dict[tensor_name], padding_shapes[tensor_name])
# Make sure that the number of groundtruth boxes now reflects the
# padded/clipped tensors.
if fields.InputDataFields.num_groundtruth_boxes in padded_tensor_dict:
padded_tensor_dict[fields.InputDataFields.num_groundtruth_boxes] = (
tf.minimum(
padded_tensor_dict[fields.InputDataFields.num_groundtruth_boxes],
max_num_boxes))
return padded_tensor_dict
def augment_input_data(tensor_dict, data_augmentation_options):
"""Applies data augmentation ops to input tensors.
Args:
tensor_dict: A dictionary of input tensors keyed by fields.InputDataFields.
data_augmentation_options: A list of tuples, where each tuple contains a
function and a dictionary that contains arguments and their values.
Usually, this is the output of core/preprocessor.build.
Returns:
A dictionary of tensors obtained by applying data augmentation ops to the
input tensor dictionary.
"""
tensor_dict[fields.InputDataFields.image] = tf.expand_dims(
tf.cast(tensor_dict[fields.InputDataFields.image], dtype=tf.float32), 0)
include_instance_masks = (fields.InputDataFields.groundtruth_instance_masks
in tensor_dict)
include_keypoints = (fields.InputDataFields.groundtruth_keypoints
in tensor_dict)
include_label_weights = (fields.InputDataFields.groundtruth_weights
in tensor_dict)
include_label_confidences = (fields.InputDataFields.groundtruth_confidences
in tensor_dict)
include_multiclass_scores = (fields.InputDataFields.multiclass_scores in
tensor_dict)
tensor_dict = preprocessor.preprocess(
tensor_dict, data_augmentation_options,
func_arg_map=preprocessor.get_default_func_arg_map(
include_label_weights=include_label_weights,
include_label_confidences=include_label_confidences,
include_multiclass_scores=include_multiclass_scores,
include_instance_masks=include_instance_masks,
include_keypoints=include_keypoints))
tensor_dict[fields.InputDataFields.image] = tf.squeeze(
tensor_dict[fields.InputDataFields.image], axis=0)
return tensor_dict
def _get_labels_dict(input_dict):
"""Extracts labels dict from input dict."""
required_label_keys = [
fields.InputDataFields.num_groundtruth_boxes,
fields.InputDataFields.groundtruth_boxes,
fields.InputDataFields.groundtruth_classes,
fields.InputDataFields.groundtruth_weights,
]
labels_dict = {}
for key in required_label_keys:
labels_dict[key] = input_dict[key]
optional_label_keys = [
fields.InputDataFields.groundtruth_confidences,
fields.InputDataFields.groundtruth_keypoints,
fields.InputDataFields.groundtruth_instance_masks,
fields.InputDataFields.groundtruth_area,
fields.InputDataFields.groundtruth_is_crowd,
fields.InputDataFields.groundtruth_difficult
]
for key in optional_label_keys:
if key in input_dict:
labels_dict[key] = input_dict[key]
if fields.InputDataFields.groundtruth_difficult in labels_dict:
labels_dict[fields.InputDataFields.groundtruth_difficult] = tf.cast(
labels_dict[fields.InputDataFields.groundtruth_difficult], tf.int32)
return labels_dict
def _replace_empty_string_with_random_number(string_tensor):
"""Returns string unchanged if non-empty, and random string tensor otherwise.
The random string is an integer 0 and 2**63 - 1, casted as string.
Args:
string_tensor: A tf.tensor of dtype string.
Returns:
out_string: A tf.tensor of dtype string. If string_tensor contains the empty
string, out_string will contain a random integer casted to a string.
Otherwise string_tensor is returned unchanged.
"""
empty_string = tf.constant('', dtype=tf.string, name='EmptyString')
random_source_id = tf.as_string(
tf.random_uniform(shape=[], maxval=2 ** 63 - 1, dtype=tf.int64))
out_string = tf.cond(
tf.equal(string_tensor, empty_string),
true_fn=lambda: random_source_id,
false_fn=lambda: string_tensor)
return out_string
def _get_features_dict(input_dict):
"""Extracts features dict from input dict."""
source_id = _replace_empty_string_with_random_number(
input_dict[fields.InputDataFields.source_id])
hash_from_source_id = tf.string_to_hash_bucket_fast(source_id, HASH_BINS)
features = {
fields.InputDataFields.image:
input_dict[fields.InputDataFields.image],
HASH_KEY: tf.cast(hash_from_source_id, tf.int32),
fields.InputDataFields.true_image_shape:
input_dict[fields.InputDataFields.true_image_shape],
fields.InputDataFields.original_image_spatial_shape:
input_dict[fields.InputDataFields.original_image_spatial_shape]
}
if fields.InputDataFields.original_image in input_dict:
features[fields.InputDataFields.original_image] = input_dict[
fields.InputDataFields.original_image]
return features
def create_train_input_fn(train_config, train_input_config,
model_config):
"""Creates a train `input` function for `Estimator`.
Args:
train_config: A train_pb2.TrainConfig.
train_input_config: An input_reader_pb2.InputReader.
model_config: A model_pb2.DetectionModel.
Returns:
`input_fn` for `Estimator` in TRAIN mode.
"""
def _train_input_fn(params=None):
return train_input(train_config, train_input_config, model_config,
params=params)
return _train_input_fn
def train_input(train_config, train_input_config,
model_config, model=None, params=None):
"""Returns `features` and `labels` tensor dictionaries for training.
Args:
train_config: A train_pb2.TrainConfig.
train_input_config: An input_reader_pb2.InputReader.
model_config: A model_pb2.DetectionModel.
model: A pre-constructed Detection Model.
If None, one will be created from the config.
params: Parameter dictionary passed from the estimator.
Returns:
A tf.data.Dataset that holds (features, labels) tuple.
features: Dictionary of feature tensors.
features[fields.InputDataFields.image] is a [batch_size, H, W, C]
float32 tensor with preprocessed images.
features[HASH_KEY] is a [batch_size] int32 tensor representing unique
identifiers for the images.
features[fields.InputDataFields.true_image_shape] is a [batch_size, 3]
int32 tensor representing the true image shapes, as preprocessed
images could be padded.
features[fields.InputDataFields.original_image] (optional) is a
[batch_size, H, W, C] float32 tensor with original images.
labels: Dictionary of groundtruth tensors.
labels[fields.InputDataFields.num_groundtruth_boxes] is a [batch_size]
int32 tensor indicating the number of groundtruth boxes.
labels[fields.InputDataFields.groundtruth_boxes] is a
[batch_size, num_boxes, 4] float32 tensor containing the corners of
the groundtruth boxes.
labels[fields.InputDataFields.groundtruth_classes] is a
[batch_size, num_boxes, num_classes] float32 one-hot tensor of
classes.
labels[fields.InputDataFields.groundtruth_weights] is a
[batch_size, num_boxes] float32 tensor containing groundtruth weights
for the boxes.
-- Optional --
labels[fields.InputDataFields.groundtruth_instance_masks] is a
[batch_size, num_boxes, H, W] float32 tensor containing only binary
values, which represent instance masks for objects.
labels[fields.InputDataFields.groundtruth_keypoints] is a
[batch_size, num_boxes, num_keypoints, 2] float32 tensor containing
keypoints for each box.
Raises:
TypeError: if the `train_config`, `train_input_config` or `model_config`
are not of the correct type.
"""
if not isinstance(train_config, train_pb2.TrainConfig):
raise TypeError('For training mode, the `train_config` must be a '
'train_pb2.TrainConfig.')
if not isinstance(train_input_config, input_reader_pb2.InputReader):
raise TypeError('The `train_input_config` must be a '
'input_reader_pb2.InputReader.')
if not isinstance(model_config, model_pb2.DetectionModel):
raise TypeError('The `model_config` must be a '
'model_pb2.DetectionModel.')
if model is None:
model_preprocess_fn = INPUT_BUILDER_UTIL_MAP['model_build'](
model_config, is_training=True).preprocess
else:
model_preprocess_fn = model.preprocess
def transform_and_pad_input_data_fn(tensor_dict):
"""Combines transform and pad operation."""
data_augmentation_options = [
preprocessor_builder.build(step)
for step in train_config.data_augmentation_options
]
data_augmentation_fn = functools.partial(
augment_input_data,
data_augmentation_options=data_augmentation_options)
image_resizer_config = config_util.get_image_resizer_config(model_config)
image_resizer_fn = image_resizer_builder.build(image_resizer_config)
transform_data_fn = functools.partial(
transform_input_data, model_preprocess_fn=model_preprocess_fn,
image_resizer_fn=image_resizer_fn,
num_classes=config_util.get_number_of_classes(model_config),
data_augmentation_fn=data_augmentation_fn,
merge_multiple_boxes=train_config.merge_multiple_label_boxes,
retain_original_image=train_config.retain_original_images,
use_multiclass_scores=train_config.use_multiclass_scores,
use_bfloat16=train_config.use_bfloat16)
tensor_dict = pad_input_data_to_static_shapes(
tensor_dict=transform_data_fn(tensor_dict),
max_num_boxes=train_input_config.max_number_of_boxes,
num_classes=config_util.get_number_of_classes(model_config),
spatial_image_shape=config_util.get_spatial_image_size(
image_resizer_config))
return (_get_features_dict(tensor_dict), _get_labels_dict(tensor_dict))
dataset = INPUT_BUILDER_UTIL_MAP['dataset_build'](
train_input_config,
transform_input_data_fn=transform_and_pad_input_data_fn,
batch_size=params['batch_size'] if params else train_config.batch_size)
return dataset
def create_eval_input_fn(eval_config, eval_input_config, model_config):
"""Creates an eval `input` function for `Estimator`.
Args:
eval_config: An eval_pb2.EvalConfig.
eval_input_config: An input_reader_pb2.InputReader.
model_config: A model_pb2.DetectionModel.
Returns:
`input_fn` for `Estimator` in EVAL mode.
"""
def _eval_input_fn(params=None):
return eval_input(eval_config, eval_input_config, model_config,
params=params)
return _eval_input_fn
def eval_input(eval_config, eval_input_config, model_config,
model=None, params=None):
"""Returns `features` and `labels` tensor dictionaries for evaluation.
Args:
eval_config: An eval_pb2.EvalConfig.
eval_input_config: An input_reader_pb2.InputReader.
model_config: A model_pb2.DetectionModel.
model: A pre-constructed Detection Model.
If None, one will be created from the config.
params: Parameter dictionary passed from the estimator.
Returns:
A tf.data.Dataset that holds (features, labels) tuple.
features: Dictionary of feature tensors.
features[fields.InputDataFields.image] is a [1, H, W, C] float32 tensor
with preprocessed images.
features[HASH_KEY] is a [1] int32 tensor representing unique
identifiers for the images.
features[fields.InputDataFields.true_image_shape] is a [1, 3]
int32 tensor representing the true image shapes, as preprocessed
images could be padded.
features[fields.InputDataFields.original_image] is a [1, H', W', C]
float32 tensor with the original image.
labels: Dictionary of groundtruth tensors.
labels[fields.InputDataFields.groundtruth_boxes] is a [1, num_boxes, 4]
float32 tensor containing the corners of the groundtruth boxes.
labels[fields.InputDataFields.groundtruth_classes] is a
[num_boxes, num_classes] float32 one-hot tensor of classes.
labels[fields.InputDataFields.groundtruth_area] is a [1, num_boxes]
float32 tensor containing object areas.
labels[fields.InputDataFields.groundtruth_is_crowd] is a [1, num_boxes]
bool tensor indicating if the boxes enclose a crowd.
labels[fields.InputDataFields.groundtruth_difficult] is a [1, num_boxes]
int32 tensor indicating if the boxes represent difficult instances.
-- Optional --
labels[fields.InputDataFields.groundtruth_instance_masks] is a
[1, num_boxes, H, W] float32 tensor containing only binary values,
which represent instance masks for objects.
Raises:
TypeError: if the `eval_config`, `eval_input_config` or `model_config`
are not of the correct type.
"""
params = params or {}
if not isinstance(eval_config, eval_pb2.EvalConfig):
raise TypeError('For eval mode, the `eval_config` must be a '
'train_pb2.EvalConfig.')
if not isinstance(eval_input_config, input_reader_pb2.InputReader):
raise TypeError('The `eval_input_config` must be a '
'input_reader_pb2.InputReader.')
if not isinstance(model_config, model_pb2.DetectionModel):
raise TypeError('The `model_config` must be a '
'model_pb2.DetectionModel.')
if model is None:
model_preprocess_fn = INPUT_BUILDER_UTIL_MAP['model_build'](
model_config, is_training=False).preprocess
else:
model_preprocess_fn = model.preprocess
def transform_and_pad_input_data_fn(tensor_dict):
"""Combines transform and pad operation."""
num_classes = config_util.get_number_of_classes(model_config)
image_resizer_config = config_util.get_image_resizer_config(model_config)
image_resizer_fn = image_resizer_builder.build(image_resizer_config)
transform_data_fn = functools.partial(
transform_input_data, model_preprocess_fn=model_preprocess_fn,
image_resizer_fn=image_resizer_fn,
num_classes=num_classes,
data_augmentation_fn=None,
retain_original_image=eval_config.retain_original_images)
tensor_dict = pad_input_data_to_static_shapes(
tensor_dict=transform_data_fn(tensor_dict),
max_num_boxes=eval_input_config.max_number_of_boxes,
num_classes=config_util.get_number_of_classes(model_config),
spatial_image_shape=config_util.get_spatial_image_size(
image_resizer_config))
return (_get_features_dict(tensor_dict), _get_labels_dict(tensor_dict))
dataset = INPUT_BUILDER_UTIL_MAP['dataset_build'](
eval_input_config,
batch_size=params['batch_size'] if params else eval_config.batch_size,
transform_input_data_fn=transform_and_pad_input_data_fn)
return dataset
def create_predict_input_fn(model_config, predict_input_config):
"""Creates a predict `input` function for `Estimator`.
Args:
model_config: A model_pb2.DetectionModel.
predict_input_config: An input_reader_pb2.InputReader.
Returns:
`input_fn` for `Estimator` in PREDICT mode.
"""
def _predict_input_fn(params=None):
"""Decodes serialized tf.Examples and returns `ServingInputReceiver`.
Args:
params: Parameter dictionary passed from the estimator.
Returns:
`ServingInputReceiver`.
"""
del params
example = tf.placeholder(dtype=tf.string, shape=[], name='tf_example')
num_classes = config_util.get_number_of_classes(model_config)
model_preprocess_fn = INPUT_BUILDER_UTIL_MAP['model_build'](
model_config, is_training=False).preprocess
image_resizer_config = config_util.get_image_resizer_config(model_config)
image_resizer_fn = image_resizer_builder.build(image_resizer_config)
transform_fn = functools.partial(
transform_input_data, model_preprocess_fn=model_preprocess_fn,
image_resizer_fn=image_resizer_fn,
num_classes=num_classes,
data_augmentation_fn=None)
decoder = tf_example_decoder.TfExampleDecoder(
load_instance_masks=False,
num_additional_channels=predict_input_config.num_additional_channels)
input_dict = transform_fn(decoder.decode(example))
images = tf.cast(input_dict[fields.InputDataFields.image], dtype=tf.float32)
images = tf.expand_dims(images, axis=0)
true_image_shape = tf.expand_dims(
input_dict[fields.InputDataFields.true_image_shape], axis=0)
return tf.estimator.export.ServingInputReceiver(
features={
fields.InputDataFields.image: images,
fields.InputDataFields.true_image_shape: true_image_shape},
receiver_tensors={SERVING_FED_EXAMPLE_KEY: example})
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maxorange/surface-to-structure | b7227ea34a6ebc358d491eea70f0fa6cca400265 | import tensorflow as tf
import numpy as np
class Model(object):
def __init__(self, vars):
self.saver = tf.train.Saver(vars)
def session(self, sess):
if sess is not None:
self.sess = sess
else:
config_proto = tf.ConfigProto()
config_proto.gpu_options.allow_growth = True
self.sess = tf.Session(config=config_proto)
def initialize(self):
self.sess.run(tf.global_variables_initializer())
def save(self, path):
self.saver.save(self.sess, path)
def restore(self, path):
self.saver.restore(self.sess, path)
def close(self):
self.sess.close()
def create_log_file(self, filename):
self.log_file = filename
f = open(self.log_file, 'w')
f.close()
def weight_variable(shape):
return tf.get_variable('W', shape, initializer=tf.random_normal_initializer(0., 0.02))
def bias_variable(shape):
return tf.get_variable('b', shape, initializer=tf.constant_initializer(0.))
def keep_prob(dropout, train):
return tf.cond(train, lambda: tf.constant(dropout), lambda: tf.constant(1.))
def softmax_ce_with_logits(logits, labels):
return tf.nn.softmax_cross_entropy_with_logits(labels=labels, logits=logits)
def sigmoid_ce_with_logits(logits, labels):
return tf.nn.sigmoid_cross_entropy_with_logits(labels=labels, logits=logits)
def sigmoid_kl_with_logits(logits, targets):
assert isinstance(targets, float)
if targets in [0., 1.]:
entropy = 0.
else:
entropy = - targets*tf.log(targets) - (1. - targets)*tf.log(1. - targets)
return sigmoid_ce_with_logits(logits, tf.ones_like(logits)*targets) - entropy
def gradient_difference_loss(x, y):
x_h_diff = x[:, 1:] - x[:, :-1]
x_w_diff = x[:, :, 1:] - x[:, :, :-1]
y_h_diff = y[:, 1:] - y[:, :-1]
y_w_diff = y[:, :, 1:] - y[:, :, :-1]
h_diff = tf.abs(tf.abs(x_h_diff) - tf.abs(y_h_diff))
w_diff = tf.abs(tf.abs(x_w_diff) - tf.abs(y_w_diff))
return h_diff + tf.transpose(w_diff)
def leaky_relu(x, leak=0.2, name='leaky_relu'):
with tf.variable_scope(name):
f1 = 0.5 * (1 + leak)
f2 = 0.5 * (1 - leak)
return f1 * x + f2 * abs(x)
def linear(x, shape, name, bias=False):
with tf.variable_scope(name):
W = weight_variable(shape)
h = tf.matmul(x, W)
if bias:
b = bias_variable([shape[-1]])
h = h + b
return h
def conv2d(x, shape, name, bias=False, stride=2, padding='SAME'):
with tf.variable_scope(name):
W = weight_variable(shape)
h = tf.nn.conv2d(x, W, strides=[1, stride, stride, 1], padding=padding)
if bias:
b = bias_variable([shape[-1]])
h = h + b
return h
def deconv2d(x, shape, output_shape, name, bias=False, stride=2, padding='SAME'):
with tf.variable_scope(name):
W = weight_variable(shape)
h = tf.nn.conv2d_transpose(x, W, output_shape, strides=[1, stride, stride, 1], padding=padding)
if bias:
b = bias_variable([shape[-2]])
h = h + b
return h
def conv3d(x, shape, name, bias=False, stride=2, padding='SAME'):
with tf.variable_scope(name):
W = weight_variable(shape)
h = tf.nn.conv3d(x, W, strides=[1, stride, stride, stride, 1], padding=padding)
if bias:
b = bias_variable([shape[-1]])
h = h + b
return h
def deconv3d(x, shape, output_shape, name, bias=False, stride=2, padding='SAME'):
with tf.variable_scope(name):
W = weight_variable(shape)
h = tf.nn.conv3d_transpose(x, W, output_shape, strides=[1, stride, stride, stride, 1], padding=padding)
if bias:
b = bias_variable([shape[-2]])
h = h + b
return h
def phase_shift_3d(x, r):
batch_size, d, h, w, c = x.get_shape().as_list()
x = tf.reshape(x, (batch_size, d, h, w, r, r, r))
for ns in [d, h, w]:
x = tf.split(x, ns, 1)
x = tf.concat([tf.squeeze(v, 1) for v in x], 3)
return tf.reshape(x, (batch_size, d*r, h*r, w*r, 1))
def subpixel_conv3d(x, r, out_channels):
x = tf.split(x, out_channels, 4)
x = tf.concat([phase_shift_3d(v, r) for v in x], 4)
return x
def pixel_shuffler_3d(x, r, k, out_channels, name):
in_channels = x.get_shape.as_list()[4]
with tf.variable_scope(name):
u = conv3d(x, [k, k, k, in_channels, out_channels*pow(r, 3)], 'conv', bias=True, stride=1)
h = subpixel_conv3d(u, r, out_channels)
return h
def minibatch_discrimination(x, n_kernels, dim_per_kernel, name):
with tf.variable_scope(name):
batch_size, nf = x.get_shape().as_list()
h = linear(x, [nf, n_kernels*dim_per_kernel], 'h1')
activation = tf.reshape(h, (batch_size, n_kernels, dim_per_kernel))
big = tf.eye(batch_size)
big = tf.expand_dims(big, 1)
abs_dif = tf.reduce_sum(tf.abs(tf.expand_dims(activation, 3) - tf.expand_dims(tf.transpose(activation, [1, 2, 0]), 0)), 2)
mask = 1. - big
masked = tf.exp(-abs_dif) * mask
def half(tens, second):
m, n, _ = tens.get_shape().as_list()
return tf.slice(tens, [0, 0, second*(batch_size/2)], [m, n, batch_size/2])
f1 = tf.reduce_sum(half(masked, 0), 2) / tf.reduce_sum(half(mask, 0))
f2 = tf.reduce_sum(half(masked, 1), 2) / tf.reduce_sum(half(mask, 1))
return tf.concat([x, f1, f2], 1)
def batch_norm(x, train, name, decay=0.99, epsilon=1e-5):
shape = x.get_shape().as_list()
with tf.variable_scope(name):
beta = tf.get_variable('beta', [shape[-1]], initializer=tf.constant_initializer(0.))
gamma = tf.get_variable('gamma', [shape[-1]], initializer=tf.random_normal_initializer(1., 0.02))
pop_mean = tf.get_variable('pop_mean', [shape[-1]], initializer=tf.constant_initializer(0.), trainable=False)
pop_var = tf.get_variable('pop_var', [shape[-1]], initializer=tf.constant_initializer(1.), trainable=False)
if pop_mean not in tf.moving_average_variables():
tf.add_to_collection(tf.GraphKeys.MOVING_AVERAGE_VARIABLES, pop_mean)
tf.add_to_collection(tf.GraphKeys.MOVING_AVERAGE_VARIABLES, pop_var)
def func1():
# execute at training time
batch_mean, batch_var = tf.nn.moments(x, range(len(shape) - 1))
update_mean = tf.assign_sub(pop_mean, (1 - decay)*(pop_mean - batch_mean))
update_var = tf.assign_sub(pop_var, (1 - decay)*(pop_var - batch_var))
with tf.control_dependencies([update_mean, update_var]):
return tf.nn.batch_normalization(x, batch_mean, batch_var, beta, gamma, epsilon)
def func2():
# execute at test time
return tf.nn.batch_normalization(x, pop_mean, pop_var, beta, gamma, epsilon)
return tf.cond(train, func1, func2)
def average_gradients(tower_grads):
average_grads = []
for grad_and_vars in zip(*tower_grads):
grads = []
for g, _ in grad_and_vars:
expanded_g = tf.expand_dims(g, 0)
grads.append(expanded_g)
grad = tf.concat(grads, 0)
grad = tf.reduce_mean(grad, 0)
var = grad_and_vars[0][1]
grad_and_var = (grad, var)
average_grads.append(grad_and_var)
return average_grads
def binary_mask(shape, p=0.7):
samples = tf.random_uniform(shape, minval=0.0, maxval=1.0)
mask = tf.less_equal(samples, p)
return tf.cast(mask, tf.float32)
def weighted_arithmetic_mean(w, x):
numer = tf.reduce_sum(w*x)
denom = tf.reduce_sum(w)
return tf.div(numer, denom)
| [
"tensorflow.cond",
"tensorflow.nn.softmax_cross_entropy_with_logits",
"tensorflow.concat",
"tensorflow.control_dependencies",
"tensorflow.reduce_sum",
"tensorflow.cast",
"tensorflow.nn.conv2d_transpose",
"tensorflow.nn.sigmoid_cross_entropy_with_logits",
"tensorflow.moving_average_variables",
"tensorflow.nn.conv2d",
"tensorflow.squeeze",
"tensorflow.div",
"tensorflow.ConfigProto",
"tensorflow.Session",
"tensorflow.train.Saver",
"tensorflow.random_normal_initializer",
"tensorflow.nn.conv3d_transpose",
"tensorflow.matmul",
"tensorflow.nn.batch_normalization",
"tensorflow.less_equal",
"tensorflow.exp",
"tensorflow.global_variables_initializer",
"tensorflow.nn.conv3d",
"tensorflow.split",
"tensorflow.add_to_collection",
"tensorflow.transpose",
"tensorflow.constant",
"tensorflow.reduce_mean",
"tensorflow.slice",
"tensorflow.reshape",
"tensorflow.ones_like",
"tensorflow.eye",
"tensorflow.expand_dims",
"tensorflow.constant_initializer",
"tensorflow.log",
"tensorflow.assign_sub",
"tensorflow.variable_scope",
"tensorflow.random_uniform",
"tensorflow.abs"
] | ops.py | [(44, 'tensorflow.nn.softmax_cross_entropy_with_logits', 'tf.nn.softmax_cross_entropy_with_logits', ([], {'labels': 'labels', 'logits': 'logits'}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.nn.sigmoid_cross_entropy_with_logits', 'tf.nn.sigmoid_cross_entropy_with_logits', ([], {'labels': 'labels', 'logits': 'logits'}), True, 'import tensorflow as tf\n'), (119, 'tensorflow.reshape', 'tf.reshape', (['x', '(batch_size, d, h, w, r, r, r)'], {}), True, 'import tensorflow as tf\n'), (123, 'tensorflow.reshape', 'tf.reshape', (['x', '(batch_size, d * r, h * r, w * r, 1)'], {}), True, 'import tensorflow as tf\n'), (126, 'tensorflow.split', 'tf.split', (['x', 'out_channels', '(4)'], {}), True, 'import tensorflow as tf\n'), (199, 'tensorflow.random_uniform', 'tf.random_uniform', (['shape'], {'minval': '(0.0)', 'maxval': '(1.0)'}), True, 'import tensorflow as tf\n'), (200, 'tensorflow.less_equal', 'tf.less_equal', (['samples', 'p'], {}), True, 'import tensorflow as tf\n'), 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'tensorflow.transpose', 'tf.transpose', (['activation', '[1, 2, 0]'], {}), True, 'import tensorflow as tf\n')] |
YorkUCVIL/Wavelet-Flow | 8d6d63fa116ec44299c32f37e66817594510f644 | import tensorflow as tf
import os
from util import *
class Validation_data:
def __init__(self,batch_override=None,shuffle_repeat=True,partial_level=0):
with tf.variable_scope(None,default_name='validation_data'):
self.crop_factor = config.validation.partial_training_crops[partial_level]
datasetRoot = config.validation.data.root_path
data_list_path = os.path.join(datasetRoot,config.validation.data.path)
n_batch = batch_override or config.validation.n_batch[partial_level]
# read in datalist and create dataset
with open(data_list_path) as f:
data_path_list = [datasetRoot + x[:-1] for x in f.readlines()]
n_data = len(data_path_list)
dataset = tf.data.Dataset.from_tensor_slices(data_path_list)
if shuffle_repeat:
dataset = dataset.shuffle(n_data).repeat()
dataset = dataset.map(self.data_map)
# validation
validation_dataset = dataset.batch(n_batch).prefetch(4)
validation_iterator = validation_dataset.make_one_shot_iterator()
validation_batch = validation_iterator.get_next()
# post processing
im = self.post_process(validation_batch)
self.im = im
self.n_data = n_data
def data_map(self, img_path):
n_bits = config.model.data.n_bits
n_bins = 2**n_bits
rgb = tf.image.decode_png(tf.read_file(img_path), channels=3, dtype=tf.uint8)
h = config.model.data.dimensions.h
w = config.model.data.dimensions.w
c = config.model.data.dimensions.c
# rgb.set_shape([h,w,c]) # variable size per example
# crop for lsun 96
rgb = tf.image.random_crop(rgb,size=[h,w,c])
# crop for patch training
crop_h = h//self.crop_factor
crop_w = w//self.crop_factor
rgb = tf.image.random_crop(rgb,size=[crop_h,crop_w,c])
# cast, bit conversion, compress domain, center
rgb = tf.cast(rgb, tf.float32)
if n_bits < 8:
rgb = tf.floor(rgb/(2**(8-n_bits)))
rgb = rgb/(n_bins) - 0.5
return rgb
def post_process(self, rgb, add_dequantization_noise=True):
n_bits = config.model.data.n_bits
n_bins = 2**n_bits
rgb_out = rgb
# discretization noise
if add_dequantization_noise:
shape = tf.shape(rgb_out)
rgb_out += tf.random_uniform(shape=shape)*(1/n_bins)
return rgb_out
| [
"tensorflow.read_file",
"tensorflow.shape",
"tensorflow.data.Dataset.from_tensor_slices",
"tensorflow.cast",
"tensorflow.floor",
"tensorflow.image.random_crop",
"tensorflow.variable_scope",
"tensorflow.random_uniform"
] | src/models/lsun_bedroom_64_haar/Validation_data.py | [(44, 'tensorflow.image.random_crop', 'tf.image.random_crop', (['rgb'], {'size': '[h, w, c]'}), True, 'import tensorflow as tf\n'), (49, 'tensorflow.image.random_crop', 'tf.image.random_crop', (['rgb'], {'size': '[crop_h, crop_w, c]'}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.cast', 'tf.cast', (['rgb', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (7, 'tensorflow.variable_scope', 'tf.variable_scope', (['None'], {'default_name': '"""validation_data"""'}), True, 'import tensorflow as tf\n'), (10, 'os.path.join', 'os.path.join', (['datasetRoot', 'config.validation.data.path'], {}), False, 'import os\n'), (17, 'tensorflow.data.Dataset.from_tensor_slices', 'tf.data.Dataset.from_tensor_slices', (['data_path_list'], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.read_file', 'tf.read_file', (['img_path'], {}), True, 'import tensorflow as tf\n'), (54, 'tensorflow.floor', 'tf.floor', (['(rgb / 2 ** (8 - n_bits))'], {}), True, 'import tensorflow as tf\n'), (67, 'tensorflow.shape', 'tf.shape', (['rgb_out'], {}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.random_uniform', 'tf.random_uniform', ([], {'shape': 'shape'}), True, 'import tensorflow as tf\n')] |
YorkUCVIL/Wavelet-Flow | 8d6d63fa116ec44299c32f37e66817594510f644 | import tensorflow as tf
import os
from util import *
class Training_data:
def __init__(self,partial_level=0):
with tf.variable_scope(None,default_name='training_data'):
self.crop_factor = config.training.partial_training_crops[partial_level]
datasetRoot = config.training.data.root_path
data_list_path = os.path.join(datasetRoot,config.training.data.path)
n_batch = config.training.n_batch[partial_level]
n_ddi_batch = config.training.n_ddi_batch[partial_level]
# read in datalist and create dataset
with open(data_list_path) as f:
data_path_list = [datasetRoot + x[:-1] for x in f.readlines()]
n_data = len(data_path_list)
dataset = tf.data.Dataset.from_tensor_slices(data_path_list)
dataset = dataset.shuffle(n_data).repeat()
dataset = dataset.map(self.data_map,num_parallel_calls=8)
# training
training_dataset = dataset.batch(n_batch).prefetch(64)
training_iterator = training_dataset.make_one_shot_iterator()
training_batch = training_iterator.get_next()
# ddi
ddi_dataset = dataset.batch(n_ddi_batch)
ddi_batch = ddi_dataset.make_one_shot_iterator().get_next()
# post processing
im = self.post_process(training_batch)
ddi_im = self.post_process(ddi_batch)
self.im = im
self.ddi_im = ddi_im
def data_map(self, img_path):
n_bits = config.model.data.n_bits
n_bins = 2**n_bits
rgb = tf.image.decode_png(tf.read_file(img_path), channels=3, dtype=tf.uint8)
h = config.model.data.dimensions.h
w = config.model.data.dimensions.w
c = config.model.data.dimensions.c
# rgb.set_shape([h,w,c]) # don't set because going to crop anyway
# crop for lsun 96, see realnvp and glow for specifics
rgb = tf.image.random_crop(rgb,size=[h,w,c])
# crop for patch training
crop_h = h//self.crop_factor
crop_w = w//self.crop_factor
rgb = tf.image.random_crop(rgb,size=[crop_h,crop_w,c])
# random left-right flops
rgb = tf.image.random_flip_left_right(rgb)
# cast, bit conversion, compress domain, center
rgb = tf.cast(rgb, tf.float32)
if n_bits < 8:
rgb = tf.floor(rgb/(2**(8-n_bits)))
rgb = rgb/(n_bins) - 0.5
return rgb
def post_process(self, rgb, add_dequantization_noise=True):
n_bits = config.model.data.n_bits
n_bins = 2**n_bits
rgb_out = rgb
# discretization noise
if add_dequantization_noise:
shape = tf.shape(rgb_out)
rgb_out += tf.random_uniform(shape=shape)*(1/n_bins)
return rgb_out
| [
"tensorflow.image.random_flip_left_right",
"tensorflow.read_file",
"tensorflow.shape",
"tensorflow.data.Dataset.from_tensor_slices",
"tensorflow.cast",
"tensorflow.floor",
"tensorflow.image.random_crop",
"tensorflow.variable_scope",
"tensorflow.random_uniform"
] | src/models/lsun_bedroom_64_haar/Training_data.py | [(49, 'tensorflow.image.random_crop', 'tf.image.random_crop', (['rgb'], {'size': '[h, w, c]'}), True, 'import tensorflow as tf\n'), (54, 'tensorflow.image.random_crop', 'tf.image.random_crop', (['rgb'], {'size': '[crop_h, crop_w, c]'}), True, 'import tensorflow as tf\n'), (57, 'tensorflow.image.random_flip_left_right', 'tf.image.random_flip_left_right', (['rgb'], {}), True, 'import tensorflow as tf\n'), (60, 'tensorflow.cast', 'tf.cast', (['rgb', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (7, 'tensorflow.variable_scope', 'tf.variable_scope', (['None'], {'default_name': '"""training_data"""'}), True, 'import tensorflow as tf\n'), (10, 'os.path.join', 'os.path.join', (['datasetRoot', 'config.training.data.path'], {}), False, 'import os\n'), (18, 'tensorflow.data.Dataset.from_tensor_slices', 'tf.data.Dataset.from_tensor_slices', (['data_path_list'], {}), True, 'import tensorflow as tf\n'), (41, 'tensorflow.read_file', 'tf.read_file', (['img_path'], {}), True, 'import tensorflow as tf\n'), (62, 'tensorflow.floor', 'tf.floor', (['(rgb / 2 ** (8 - n_bits))'], {}), True, 'import tensorflow as tf\n'), (75, 'tensorflow.shape', 'tf.shape', (['rgb_out'], {}), True, 'import tensorflow as tf\n'), (76, 'tensorflow.random_uniform', 'tf.random_uniform', ([], {'shape': 'shape'}), True, 'import tensorflow as tf\n')] |
ryanxjhan/AI-Space-Invader | 256365ca5e55af93fdf6db45d604d08aa4fad905 | """Common functions you may find useful in your implementation."""
import semver
import tensorflow as tf
from six.moves import cPickle
def get_uninitialized_variables(variables=None):
"""Return a list of uninitialized tf variables.
Parameters
----------
variables: tf.Variable, list(tf.Variable), optional
Filter variable list to only those that are uninitialized. If no
variables are specified the list of all variables in the graph
will be used.
Returns
-------
list(tf.Variable)
List of uninitialized tf variables.
"""
sess = tf.get_default_session()
if variables is None:
variables = tf.global_variables()
else:
variables = list(variables)
if len(variables) == 0:
return []
if semver.match(tf.__version__, '<1.0.0'):
init_flag = sess.run(
tf.pack([tf.is_variable_initialized(v) for v in variables]))
else:
init_flag = sess.run(
tf.stack([tf.is_variable_initialized(v) for v in variables]))
return [v for v, f in zip(variables, init_flag) if not f]
def get_hard_target_model_updates(target, source):
"""Return list of target model update ops.
These are hard target updates. The source weights are copied
directly to the target network.
Parameters
----------
target: keras.models.Model
The target model. Should have same architecture as source model.
source: keras.models.Model
The source model. Should have same architecture as target model.
Returns
-------
list(tf.Tensor)
List of tensor update ops.
"""
pass
def load_pk(filename):
fin = open(filename,"rb")
object = cPickle.load(fin)
fin.close()
return object
def save_as_pk(data, filename):
fout = open(filename,'wb')
cPickle.dump(data,fout,protocol=cPickle.HIGHEST_PROTOCOL)
fout.close()
| [
"tensorflow.get_default_session",
"tensorflow.global_variables",
"tensorflow.is_variable_initialized"
] | deeprl_p2/utils.py | [(23, 'tensorflow.get_default_session', 'tf.get_default_session', ([], {}), True, 'import tensorflow as tf\n'), (32, 'semver.match', 'semver.match', (['tf.__version__', '"""<1.0.0"""'], {}), False, 'import semver\n'), (64, 'six.moves.cPickle.load', 'cPickle.load', (['fin'], {}), False, 'from six.moves import cPickle\n'), (70, 'six.moves.cPickle.dump', 'cPickle.dump', (['data', 'fout'], {'protocol': 'cPickle.HIGHEST_PROTOCOL'}), False, 'from six.moves import cPickle\n'), (25, 'tensorflow.global_variables', 'tf.global_variables', ([], {}), True, 'import tensorflow as tf\n'), (34, 'tensorflow.is_variable_initialized', 'tf.is_variable_initialized', (['v'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.is_variable_initialized', 'tf.is_variable_initialized', (['v'], {}), True, 'import tensorflow as tf\n')] |
gyshi/intel-models | 4ead44aa254a84109ac8019f5d386e3adb75ac26 | """Validate a face recognizer on the "Labeled Faces in the Wild" dataset (http://vis-www.cs.umass.edu/lfw/).
Embeddings are calculated using the pairs from http://vis-www.cs.umass.edu/lfw/pairs.txt and the ROC curve
is calculated and plotted. Both the model metagraph and the model parameters need to exist
in the same directory, and the metagraph should have the extension '.meta'.
"""
#
# -*- coding: utf-8 -*-
#
# Copyright (c) 2019 Intel Corporation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# SPDX-License-Identifier: EPL-2.0
#
# MIT License
#
# Copyright (c) 2016 David Sandberg
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import tensorflow as tf
import numpy as np
import argparse
import facenet
import lfw
import os
import sys
from tensorflow.python.ops import data_flow_ops
from sklearn import metrics
from scipy.optimize import brentq
from scipy import interpolate
import time
def main(args):
with tf.Graph().as_default():
config = tf.ConfigProto(inter_op_parallelism_threads=args.num_inter_threads,
intra_op_parallelism_threads=args.num_intra_threads)
with tf.Session(config = config) as sess:
# Read the file containing the pairs used for testing
pairs = lfw.read_pairs(os.path.expanduser(args.lfw_pairs))
# Get the paths for the corresponding images
paths, actual_issame = lfw.get_paths(os.path.expanduser(args.lfw_dir), pairs)
image_paths_placeholder = tf.placeholder(tf.string, shape=(None,1), name='image_paths')
labels_placeholder = tf.placeholder(tf.int32, shape=(None,1), name='labels')
batch_size_placeholder = tf.placeholder(tf.int32, name='batch_size')
control_placeholder = tf.placeholder(tf.int32, shape=(None,1), name='control')
phase_train_placeholder = tf.placeholder(tf.bool, name='phase_train')
nrof_preprocess_threads = 4
image_size = (args.image_size, args.image_size)
eval_input_queue = data_flow_ops.FIFOQueue(capacity=2000000,
dtypes=[tf.string, tf.int32, tf.int32],
shapes=[(1,), (1,), (1,)],
shared_name=None, name=None)
eval_enqueue_op = eval_input_queue.enqueue_many([image_paths_placeholder, labels_placeholder, control_placeholder], name='eval_enqueue_op')
image_batch, label_batch = facenet.create_input_pipeline(eval_input_queue, image_size, nrof_preprocess_threads, batch_size_placeholder)
# Load the model
input_map = {'image_batch': image_batch, 'label_batch': label_batch, 'phase_train': phase_train_placeholder}
facenet.load_model(args.model, input_map=input_map)
# Get output tensor
embeddings = tf.get_default_graph().get_tensor_by_name("embeddings:0")
#
coord = tf.train.Coordinator()
tf.train.start_queue_runners(coord=coord, sess=sess)
evaluate(sess, eval_enqueue_op, image_paths_placeholder, labels_placeholder, phase_train_placeholder, batch_size_placeholder, control_placeholder,
embeddings, label_batch, paths, actual_issame, args.lfw_batch_size, args.lfw_nrof_folds, args.distance_metric, args.subtract_mean,
args.use_flipped_images, args.use_fixed_image_standardization, args.warmup_steps, args.max_steps)
def evaluate(sess, enqueue_op, image_paths_placeholder, labels_placeholder, phase_train_placeholder, batch_size_placeholder, control_placeholder,
embeddings, labels, image_paths, actual_issame, batch_size, nrof_folds, distance_metric, subtract_mean, use_flipped_images, use_fixed_image_standardization,
warmup_steps, max_steps):
# Run forward pass to calculate embeddings
print('Runnning forward pass on LFW images')
# Enqueue one epoch of image paths and labels
nrof_embeddings = len(actual_issame)*2 # nrof_pairs * nrof_images_per_pair
nrof_flips = 2 if use_flipped_images else 1
nrof_images = nrof_embeddings * nrof_flips
labels_array = np.expand_dims(np.arange(0,nrof_images),1)
image_paths_array = np.expand_dims(np.repeat(np.array(image_paths),nrof_flips),1)
control_array = np.zeros_like(labels_array, np.int32)
if use_fixed_image_standardization:
control_array += np.ones_like(labels_array)*facenet.FIXED_STANDARDIZATION
if use_flipped_images:
# Flip every second image
control_array += (labels_array % 2)*facenet.FLIP
sess.run(enqueue_op, {image_paths_placeholder: image_paths_array, labels_placeholder: labels_array, control_placeholder: control_array})
embedding_size = int(embeddings.get_shape()[1])
assert nrof_images % batch_size == 0, 'The number of LFW images must be an integer multiple of the LFW batch size'
nrof_batches = nrof_images // batch_size
emb_array = np.zeros((nrof_images, embedding_size))
lab_array = np.zeros((nrof_images,))
ttime = 0
for i in range(nrof_batches):
feed_dict = {phase_train_placeholder:False, batch_size_placeholder:batch_size}
stime = time.time()
emb, lab = sess.run([embeddings, labels], feed_dict=feed_dict)
etime = time.time()
if i >= warmup_steps:
ttime += etime - stime
lab_array[lab] = lab
emb_array[lab, :] = emb
if i % 10 == 9:
print("Batch {0} elapsed Time {1}".format(str(i), str(etime - stime)))
if i > max_steps:
print ("Batchsize: %d" % (batch_size))
print ("Time spent per BATCH: %.4f ms" % (ttime / (i - warmup_steps) * 1000))
print ("Total samples/sec: %.4f samples/s" % ((i - warmup_steps) * batch_size / ttime))
sys.stdout.flush()
return
embeddings = np.zeros((nrof_embeddings, embedding_size*nrof_flips))
if use_flipped_images:
# Concatenate embeddings for flipped and non flipped version of the images
embeddings[:,:embedding_size] = emb_array[0::2,:]
embeddings[:,embedding_size:] = emb_array[1::2,:]
else:
embeddings = emb_array
assert np.array_equal(lab_array, np.arange(nrof_images))==True, 'Wrong labels used for evaluation, possibly caused by training examples left in the input pipeline'
tpr, fpr, accuracy, val, val_std, far = lfw.evaluate(embeddings, actual_issame, nrof_folds=nrof_folds, distance_metric=distance_metric, subtract_mean=subtract_mean)
print ("Batchsize: %d" % (batch_size))
print ("Time spent per BATCH: %.4f ms" % (ttime / (nrof_batches - warmup_steps) * 1000))
print ("Total samples/sec: %.4f samples/s" % ((nrof_batches - warmup_steps) * batch_size / ttime))
print('Accuracy: %2.5f+-%2.5f' % (np.mean(accuracy), np.std(accuracy)))
print('Validation rate: %2.5f+-%2.5f @ FAR=%2.5f' % (val, val_std, far))
auc = metrics.auc(fpr, tpr)
print('Area Under Curve (AUC): %1.3f' % auc)
eer = brentq(lambda x: 1. - x - interpolate.interp1d(fpr, tpr)(x), 0., 1.)
print('Equal Error Rate (EER): %1.3f' % eer)
def parse_arguments(argv):
parser = argparse.ArgumentParser()
parser.add_argument('lfw_dir', type=str,
help='Path to the data directory containing aligned LFW face patches.')
parser.add_argument('--lfw_batch_size', type=int,
help='Number of images to process in a batch in the LFW test set.', default=100)
parser.add_argument('model', type=str,
help='Could be either a directory containing the meta_file and ckpt_file or a model protobuf (.pb) file')
parser.add_argument('--image_size', type=int,
help='Image size (height, width) in pixels.', default=160)
parser.add_argument('--lfw_pairs', type=str,
help='The file containing the pairs to use for validation.', default='data/pairs.txt')
parser.add_argument('--lfw_nrof_folds', type=int,
help='Number of folds to use for cross validation. Mainly used for testing.', default=10)
parser.add_argument('--distance_metric', type=int,
help='Distance metric 0:euclidian, 1:cosine similarity.', default=0)
parser.add_argument('--use_flipped_images',
help='Concatenates embeddings for the image and its horizontally flipped counterpart.', action='store_true')
parser.add_argument('--subtract_mean',
help='Subtract feature mean before calculating distance.', action='store_true')
parser.add_argument('--use_fixed_image_standardization',
help='Performs fixed standardization of images.', action='store_true')
parser.add_argument('--num_inter_threads', type=int,
help='Number of inter op threads', default=0)
parser.add_argument('--num_intra_threads', type=int,
help='Number of intra op thread pool', default=0)
parser.add_argument('--warmup_steps', type=int,
help='Number of warmup steps', default=40)
parser.add_argument('--max_steps', type=int,
help='Number of max steps', default=1000)
return parser.parse_args(argv)
if __name__ == '__main__':
main(parse_arguments(sys.argv[1:]))
| [
"tensorflow.Graph",
"tensorflow.get_default_graph",
"numpy.ones_like",
"numpy.arange",
"tensorflow.train.start_queue_runners",
"tensorflow.train.Coordinator",
"tensorflow.placeholder",
"tensorflow.ConfigProto",
"numpy.std",
"scipy.interpolate.interp1d",
"numpy.zeros_like",
"numpy.mean",
"tensorflow.Session",
"tensorflow.python.ops.data_flow_ops.FIFOQueue",
"sklearn.metrics.auc",
"numpy.array",
"numpy.zeros"
] | models/face_detection_and_alignment/tensorflow/facenet/fp32/validate_on_lfw.py | [(123, 'numpy.zeros_like', 'np.zeros_like', (['labels_array', 'np.int32'], {}), True, 'import numpy as np\n'), (134, 'numpy.zeros', 'np.zeros', (['(nrof_images, embedding_size)'], {}), True, 'import numpy as np\n'), (135, 'numpy.zeros', 'np.zeros', (['(nrof_images,)'], {}), True, 'import numpy as np\n'), (156, 'numpy.zeros', 'np.zeros', (['(nrof_embeddings, embedding_size * nrof_flips)'], {}), True, 'import numpy as np\n'), (165, 'lfw.evaluate', 'lfw.evaluate', (['embeddings', 'actual_issame'], {'nrof_folds': 'nrof_folds', 'distance_metric': 'distance_metric', 'subtract_mean': 'subtract_mean'}), False, 'import lfw\n'), (173, 'sklearn.metrics.auc', 'metrics.auc', (['fpr', 'tpr'], {}), False, 'from sklearn import metrics\n'), (179, 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {}), False, 'import argparse\n'), (70, 'tensorflow.ConfigProto', 'tf.ConfigProto', ([], {'inter_op_parallelism_threads': 'args.num_inter_threads', 'intra_op_parallelism_threads': 'args.num_intra_threads'}), True, 'import tensorflow as tf\n'), (121, 'numpy.arange', 'np.arange', (['(0)', 'nrof_images'], {}), True, 'import numpy as np\n'), (139, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (141, 'time.time', 'time.time', ([], {}), False, 'import time\n'), (73, 'tensorflow.Session', 'tf.Session', ([], {'config': 'config'}), True, 'import tensorflow as tf\n'), (81, 'tensorflow.placeholder', 'tf.placeholder', (['tf.string'], {'shape': '(None, 1)', 'name': '"""image_paths"""'}), True, 'import tensorflow as tf\n'), (82, 'tensorflow.placeholder', 'tf.placeholder', (['tf.int32'], {'shape': '(None, 1)', 'name': '"""labels"""'}), True, 'import tensorflow as tf\n'), (83, 'tensorflow.placeholder', 'tf.placeholder', (['tf.int32'], {'name': '"""batch_size"""'}), True, 'import tensorflow as tf\n'), (84, 'tensorflow.placeholder', 'tf.placeholder', (['tf.int32'], {'shape': '(None, 1)', 'name': '"""control"""'}), True, 'import tensorflow as tf\n'), (85, 'tensorflow.placeholder', 'tf.placeholder', (['tf.bool'], {'name': '"""phase_train"""'}), True, 'import tensorflow as tf\n'), (89, 'tensorflow.python.ops.data_flow_ops.FIFOQueue', 'data_flow_ops.FIFOQueue', ([], {'capacity': '(2000000)', 'dtypes': '[tf.string, tf.int32, tf.int32]', 'shapes': '[(1,), (1,), (1,)]', 'shared_name': 'None', 'name': 'None'}), False, 'from tensorflow.python.ops import data_flow_ops\n'), (94, 'facenet.create_input_pipeline', 'facenet.create_input_pipeline', (['eval_input_queue', 'image_size', 'nrof_preprocess_threads', 'batch_size_placeholder'], {}), False, 'import facenet\n'), (98, 'facenet.load_model', 'facenet.load_model', (['args.model'], {'input_map': 'input_map'}), False, 'import facenet\n'), (103, 'tensorflow.train.Coordinator', 'tf.train.Coordinator', ([], {}), True, 'import tensorflow as tf\n'), (104, 'tensorflow.train.start_queue_runners', 'tf.train.start_queue_runners', ([], {'coord': 'coord', 'sess': 'sess'}), True, 'import tensorflow as tf\n'), (122, 'numpy.array', 'np.array', (['image_paths'], {}), True, 'import numpy as np\n'), (125, 'numpy.ones_like', 'np.ones_like', (['labels_array'], {}), True, 'import numpy as np\n'), (153, 'sys.stdout.flush', 'sys.stdout.flush', ([], {}), False, 'import sys\n'), (164, 'numpy.arange', 'np.arange', (['nrof_images'], {}), True, 'import numpy as np\n'), (69, 'tensorflow.Graph', 'tf.Graph', ([], {}), True, 'import tensorflow as tf\n'), (76, 'os.path.expanduser', 'os.path.expanduser', (['args.lfw_pairs'], {}), False, 'import os\n'), (79, 'os.path.expanduser', 'os.path.expanduser', (['args.lfw_dir'], {}), False, 'import os\n'), (170, 'numpy.mean', 'np.mean', (['accuracy'], {}), True, 'import numpy as np\n'), (170, 'numpy.std', 'np.std', (['accuracy'], {}), True, 'import numpy as np\n'), (101, 'tensorflow.get_default_graph', 'tf.get_default_graph', ([], {}), True, 'import tensorflow as tf\n'), (175, 'scipy.interpolate.interp1d', 'interpolate.interp1d', (['fpr', 'tpr'], {}), False, 'from scipy import interpolate\n')] |
MaxInGaussian/ZS-VAFNN | d80846248eb244adf3c56560b15155d1682550cc | ''' SGPA_graph.py '''
import tensorflow as tf
## Computation graph for SGPA
def build_SGPA_graph(X, layers_width, n_samples, n_basis):
KL = 0
Z = tf.expand_dims(tf.tile(tf.expand_dims(X, 0), [n_samples, 1, 1]), 2)
for h, n_out in enumerate(layers_width[1:]):
# Hidden layer
if(h < len(layers_width)-2):
# Perform affine mapping at each layer of the neural network
Z = tf.layers.dense(Z, n_basis//2)
# Define variational parameters
alpha_mean = tf.get_variable('alpha_mean_layer'+str(h),
shape=[1, 1, n_basis, n_out],
initializer=tf.random_normal_initializer())
alpha_logstd = tf.get_variable('alpha_logstd_layer'+str(h),
shape=[1, 1, n_basis, n_out],
initializer=tf.random_normal_initializer())
alpha_std = tf.exp(alpha_logstd)
# Compute epsilon from {n_samples} standard Gaussian
# epsilon = tf.random_normal([n_samples, 1, n_out*2, n_out])
epsilon = tf.random_uniform([n_samples, 1, n_basis, n_out])
hyp_params = tf.get_variable('hyp_params_layer'+str(h),
shape=[2],
initializer=tf.random_normal_initializer())
l1, l2 = tf.nn.sigmoid(hyp_params[0]), tf.exp(hyp_params[1])
epsilon = tf.sinh(epsilon*l2)/tf.cosh(epsilon*l2)**l1/l2
# Compute A_{h+1}
A = tf.tile(alpha_mean+epsilon*alpha_std, [1, tf.shape(X)[0], 1, 1])
# Compute z_{h}A_{h+1}
Z1 = tf.matmul(Z, A[:,:,:n_basis//2,:])/tf.sqrt(n_basis*.5)
Z2 = tf.matmul(Z, A[:,:,n_basis//2:,:])/tf.sqrt(n_basis*.5)
# Compute u_{h+1} and v_{h+1}
U, V = tf.cos(Z1)+tf.cos(Z2), tf.sin(Z1)+tf.sin(Z2)
Z = tf.concat([U, V], 3)/tf.sqrt(n_out*1.)
KL += tf.reduce_mean(alpha_std**2+alpha_mean**2-2*alpha_logstd-1)/2.
# Output layer
else:
F = tf.squeeze(tf.layers.dense(Z, n_out), [2])
return F, KL | [
"tensorflow.matmul",
"tensorflow.sin",
"tensorflow.nn.sigmoid",
"tensorflow.concat",
"tensorflow.cos",
"tensorflow.reduce_mean",
"tensorflow.shape",
"tensorflow.layers.dense",
"tensorflow.exp",
"tensorflow.expand_dims",
"tensorflow.cosh",
"tensorflow.sinh",
"tensorflow.sqrt",
"tensorflow.random_normal_initializer",
"tensorflow.random_uniform"
] | demo/SGPA_graph.py | [(7, 'tensorflow.expand_dims', 'tf.expand_dims', (['X', '(0)'], {}), True, 'import tensorflow as tf\n'), (12, 'tensorflow.layers.dense', 'tf.layers.dense', (['Z', '(n_basis // 2)'], {}), True, 'import tensorflow as tf\n'), (20, 'tensorflow.exp', 'tf.exp', (['alpha_logstd'], {}), True, 'import tensorflow as tf\n'), (23, 'tensorflow.random_uniform', 'tf.random_uniform', (['[n_samples, 1, n_basis, n_out]'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.nn.sigmoid', 'tf.nn.sigmoid', (['hyp_params[0]'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.exp', 'tf.exp', (['hyp_params[1]'], {}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.matmul', 'tf.matmul', (['Z', 'A[:, :, :n_basis // 2, :]'], {}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.sqrt', 'tf.sqrt', (['(n_basis * 0.5)'], {}), True, 'import tensorflow as tf\n'), (33, 'tensorflow.matmul', 'tf.matmul', (['Z', 'A[:, :, n_basis // 2:, :]'], {}), True, 'import tensorflow as tf\n'), (33, 'tensorflow.sqrt', 'tf.sqrt', (['(n_basis * 0.5)'], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.concat', 'tf.concat', (['[U, V]', '(3)'], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.sqrt', 'tf.sqrt', (['(n_out * 1.0)'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['(alpha_std ** 2 + alpha_mean ** 2 - 2 * alpha_logstd - 1)'], {}), True, 'import tensorflow as tf\n'), (40, 'tensorflow.layers.dense', 'tf.layers.dense', (['Z', 'n_out'], {}), True, 'import tensorflow as tf\n'), (16, 'tensorflow.random_normal_initializer', 'tf.random_normal_initializer', ([], {}), True, 'import tensorflow as tf\n'), (19, 'tensorflow.random_normal_initializer', 'tf.random_normal_initializer', ([], {}), True, 'import tensorflow as tf\n'), (26, 'tensorflow.random_normal_initializer', 'tf.random_normal_initializer', ([], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.sinh', 'tf.sinh', (['(epsilon * l2)'], {}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.cos', 'tf.cos', (['Z1'], {}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.cos', 'tf.cos', (['Z2'], {}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.sin', 'tf.sin', (['Z1'], {}), True, 'import tensorflow as tf\n'), (35, 'tensorflow.sin', 'tf.sin', (['Z2'], {}), True, 'import tensorflow as tf\n'), (28, 'tensorflow.cosh', 'tf.cosh', (['(epsilon * l2)'], {}), True, 'import tensorflow as tf\n'), (30, 'tensorflow.shape', 'tf.shape', (['X'], {}), True, 'import tensorflow as tf\n')] |
xiaoshicae/Others | a5df75f1da527f94c1c79870a8f5ac7c9a7353c2 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""Deploy Slim models across multiple clones and replicas.
# TODO(sguada) docstring paragraph by (a) motivating the need for the file and
# (b) defining clones.
# TODO(sguada) describe the high-level components of model deployment.
# E.g. "each model deployment is composed of several parts: a DeploymentConfig,
# which captures A, B and C, an input_fn which loads data.. etc
To easily train a model on multiple GPUs or across multiple machines this
module provides a set of helper functions: `create_clones`,
`optimize_clones` and `deploy`.
Usage:
g = tf.Graph()
# Set up DeploymentConfig
config = model_deploy.DeploymentConfig(num_clones=2, clone_on_cpu=True)
# Create the global step on the device storing the variables.
with tf.device(config.variables_device()):
global_step = slim.create_global_step()
# Define the inputs
with tf.device(config.inputs_device()):
images, labels = LoadData(...)
inputs_queue = slim.data.prefetch_queue((images, labels))
# Define the optimizer.
with tf.device(config.optimizer_device()):
optimizer = tf.train.MomentumOptimizer(FLAGS.learning_rate, FLAGS.momentum)
# Define the model including the loss.
def model_fn(inputs_queue):
images, labels = inputs_queue.dequeue()
predictions = CreateNetwork(images)
slim.losses.log_loss(predictions, labels)
model_dp = model_deploy.deploy(config, model_fn, [inputs_queue],
optimizer=optimizer)
# Run training.
slim.learning.train(model_dp.train_op, my_log_dir,
summary_op=model_dp.summary_op)
The Clone namedtuple holds together the values associated with each call to
model_fn:
* outputs: The return values of the calls to `model_fn()`.
* scope: The scope used to create the clone.
* device: The device used to create the clone.
DeployedModel namedtuple, holds together the values needed to train multiple
clones:
* train_op: An operation that run the optimizer training op and include
all the update ops created by `model_fn`. Present only if an optimizer
was specified.
* summary_op: An operation that run the summaries created by `model_fn`
and process_gradients.
* total_loss: A `Tensor` that contains the sum of all losses created by
`model_fn` plus the regularization losses.
* clones: List of `Clone` tuples returned by `create_clones()`.
DeploymentConfig parameters:
* num_clones: Number of model clones to deploy in each replica.
* clone_on_cpu: True if clones should be placed on CPU.
* replica_id: Integer. Index of the replica for which the model is
deployed. Usually 0 for the chief replica.
* num_replicas: Number of replicas to use.
* num_ps_tasks: Number of tasks for the `ps` job. 0 to not use replicas.
* worker_job_name: A name for the worker job.
* ps_job_name: A name for the parameter server job.
TODO(sguada):
- describe side effect to the graph.
- what happens to summaries and update_ops.
- which graph collections are altered.
- write a tutorial on how to use this.
- analyze the possibility of calling deploy more than once.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import collections
import tensorflow as tf
from tensorflow.python.ops import control_flow_ops
slim = tf.contrib.slim
__all__ = ['create_clones',
'deploy',
'optimize_clones',
'DeployedModel',
'DeploymentConfig',
'Clone',
]
# Namedtuple used to represent a clone during deployment.
Clone = collections.namedtuple('Clone',
['outputs', # Whatever model_fn() returned.
'scope', # The scope used to create it.
'device', # The device used to create.
])
# Namedtuple used to represent a DeployedModel, returned by deploy().
DeployedModel = collections.namedtuple('DeployedModel',
['train_op', # The `train_op`
'summary_op', # The `summary_op`
'total_loss', # The loss `Tensor`
'clones', # A list of `Clones` tuples.
])
# Default parameters for DeploymentConfig
_deployment_params = {'num_clones': 1,
'clone_on_cpu': False,
'fake_multiple_gpus': False,
'replica_id': 0,
'num_replicas': 1,
'num_ps_tasks': 0,
'worker_job_name': 'worker',
'ps_job_name': 'ps'}
def create_clones(config, model_fn, args=None, kwargs=None):
"""Creates multiple clones according to config using a `model_fn`.
The returned values of `model_fn(*args, **kwargs)` are collected along with
the scope and device used to created it in a namedtuple
`Clone(outputs, scope, device)`
Note: it is assumed that any loss created by `model_fn` is collected at
the tf.GraphKeys.LOSSES collection.
To recover the losses, summaries or update_ops created by the clone use:
```python
losses = tf.get_collection(tf.GraphKeys.LOSSES, clone.scope)
summaries = tf.get_collection(tf.GraphKeys.SUMMARIES, clone.scope)
update_ops = tf.get_collection(tf.GraphKeys.UPDATE_OPS, clone.scope)
```
The deployment options are specified by the config object and support
deploying one or several clones on different GPUs and one or several replicas
of such clones.
The argument `model_fn` is called `config.num_clones` times to create the
model clones as `model_fn(*args, **kwargs)`.
If `config` specifies deployment on multiple replicas then the default
tensorflow device is set appropriatly for each call to `model_fn` and for the
slim variable creation functions: model and global variables will be created
on the `ps` device, the clone operations will be on the `worker` device.
Args:
config: A DeploymentConfig object.
model_fn: A callable. Called as `model_fn(*args, **kwargs)`
args: Optional list of arguments to pass to `model_fn`.
kwargs: Optional list of keyword arguments to pass to `model_fn`.
Returns:
A list of namedtuples `Clone`.
"""
clones = []
args = args or []
kwargs = kwargs or {}
with slim.arg_scope([slim.model_variable, slim.variable],
device=config.variables_device()):
# Create clones.
for i in range(0, config.num_clones):
with tf.name_scope(config.clone_scope(i)) as clone_scope:
clone_device = config.clone_device(i)
with tf.device(clone_device):
with tf.variable_scope(tf.get_variable_scope(),
reuse=True if i > 0 else None):
outputs = model_fn(*args, **kwargs)
clones.append(Clone(outputs, clone_scope, clone_device))
return clones
def _gather_clone_loss(clone, num_clones, regularization_losses):
"""Gather the loss for a single clone.
Args:
clone: A Clone namedtuple.
num_clones: The number of clones being deployed.
regularization_losses: Possibly empty list of regularization_losses
to add to the clone losses.
Returns:
A tensor for the total loss for the clone. Can be None.
"""
# The return value.
sum_loss = None
# Individual components of the loss that will need summaries.
clone_loss = None
regularization_loss = None
# Compute and aggregate losses on the clone device.
with tf.device(clone.device):
all_losses = []
clone_losses = tf.get_collection(tf.GraphKeys.LOSSES, clone.scope)
if clone_losses:
clone_loss = tf.add_n(clone_losses, name='clone_loss')
if num_clones > 1:
clone_loss = tf.div(clone_loss, 1.0 * num_clones,
name='scaled_clone_loss')
all_losses.append(clone_loss)
if regularization_losses:
regularization_loss = tf.add_n(regularization_losses,
name='regularization_loss')
all_losses.append(regularization_loss)
if all_losses:
sum_loss = tf.add_n(all_losses)
# Add the summaries out of the clone device block.
if clone_loss is not None:
tf.summary.scalar('clone_loss', clone_loss)
# tf.summary.scalar(clone.scope + '/clone_loss', clone_loss)
if regularization_loss is not None:
tf.summary.scalar('regularization_loss', regularization_loss)
return sum_loss
def _optimize_clone(optimizer, clone, num_clones, regularization_losses,
**kwargs):
"""Compute losses and gradients for a single clone.
Args:
optimizer: A tf.Optimizer object.
clone: A Clone namedtuple.
num_clones: The number of clones being deployed.
regularization_losses: Possibly empty list of regularization_losses
to add to the clone losses.
**kwargs: Dict of kwarg to pass to compute_gradients().
Returns:
A tuple (clone_loss, clone_grads_and_vars).
- clone_loss: A tensor for the total loss for the clone. Can be None.
- clone_grads_and_vars: List of (gradient, variable) for the clone.
Can be empty.
"""
sum_loss = _gather_clone_loss(clone, num_clones, regularization_losses)
clone_grad = None
if sum_loss is not None:
with tf.device(clone.device):
clone_grad = optimizer.compute_gradients(sum_loss, **kwargs)
return sum_loss, clone_grad
def optimize_clones(clones, optimizer,
regularization_losses=None,
**kwargs):
"""Compute clone losses and gradients for the given list of `Clones`.
Note: The regularization_losses are added to the first clone losses.
Args:
clones: List of `Clones` created by `create_clones()`.
optimizer: An `Optimizer` object.
regularization_losses: Optional list of regularization losses. If None it
will gather them from tf.GraphKeys.REGULARIZATION_LOSSES. Pass `[]` to
exclude them.
**kwargs: Optional list of keyword arguments to pass to `compute_gradients`.
Returns:
A tuple (total_loss, grads_and_vars).
- total_loss: A Tensor containing the average of the clone losses
including the regularization loss.
- grads_and_vars: A List of tuples (gradient, variable) containing the
sum of the gradients for each variable.
"""
grads_and_vars = []
clones_losses = []
num_clones = len(clones)
if regularization_losses is None:
regularization_losses = tf.get_collection(
tf.GraphKeys.REGULARIZATION_LOSSES)
for clone in clones:
with tf.name_scope(clone.scope):
clone_loss, clone_grad = _optimize_clone(
optimizer, clone, num_clones, regularization_losses, **kwargs)
if clone_loss is not None:
clones_losses.append(clone_loss)
grads_and_vars.append(clone_grad)
# Only use regularization_losses for the first clone
regularization_losses = None
# Compute the total_loss summing all the clones_losses.
total_loss = tf.add_n(clones_losses, name='total_loss')
# Sum the gradients accross clones.
grads_and_vars = _sum_clones_gradients(grads_and_vars)
return total_loss, grads_and_vars
def deploy(config,
model_fn,
args=None,
kwargs=None,
optimizer=None,
summarize_gradients=False):
"""Deploys a Slim-constructed model across multiple clones.
The deployment options are specified by the config object and support
deploying one or several clones on different GPUs and one or several replicas
of such clones.
The argument `model_fn` is called `config.num_clones` times to create the
model clones as `model_fn(*args, **kwargs)`.
The optional argument `optimizer` is an `Optimizer` object. If not `None`,
the deployed model is configured for training with that optimizer.
If `config` specifies deployment on multiple replicas then the default
tensorflow device is set appropriatly for each call to `model_fn` and for the
slim variable creation functions: model and global variables will be created
on the `ps` device, the clone operations will be on the `worker` device.
Args:
config: A `DeploymentConfig` object.
model_fn: A callable. Called as `model_fn(*args, **kwargs)`
args: Optional list of arguments to pass to `model_fn`.
kwargs: Optional list of keyword arguments to pass to `model_fn`.
optimizer: Optional `Optimizer` object. If passed the model is deployed
for training with that optimizer.
summarize_gradients: Whether or not add summaries to the gradients.
Returns:
A `DeployedModel` namedtuple.
"""
# Gather initial summaries.
summaries = set(tf.get_collection(tf.GraphKeys.SUMMARIES))
# Create Clones.
clones = create_clones(config, model_fn, args, kwargs)
first_clone = clones[0]
# Gather update_ops from the first clone. These contain, for example,
# the updates for the batch_norm variables created by model_fn.
update_ops = tf.get_collection(tf.GraphKeys.UPDATE_OPS, first_clone.scope)
train_op = None
total_loss = None
with tf.device(config.optimizer_device()):
if optimizer:
# Place the global step on the device storing the variables.
with tf.device(config.variables_device()):
global_step = slim.get_or_create_global_step()
# Compute the gradients for the clones.
total_loss, clones_gradients = optimize_clones(clones, optimizer)
if clones_gradients:
if summarize_gradients:
# Add summaries to the gradients.
summaries |= set(_add_gradients_summaries(clones_gradients))
# Create gradient updates.
grad_updates = optimizer.apply_gradients(clones_gradients,
global_step=global_step)
update_ops.append(grad_updates)
update_op = tf.group(*update_ops)
train_op = control_flow_ops.with_dependencies([update_op], total_loss,
name='train_op')
else:
clones_losses = []
regularization_losses = tf.get_collection(
tf.GraphKeys.REGULARIZATION_LOSSES)
for clone in clones:
with tf.name_scope(clone.scope):
clone_loss = _gather_clone_loss(clone, len(clones),
regularization_losses)
if clone_loss is not None:
clones_losses.append(clone_loss)
# Only use regularization_losses for the first clone
regularization_losses = None
if clones_losses:
total_loss = tf.add_n(clones_losses, name='total_loss')
# Add the summaries from the first clone. These contain the summaries
# created by model_fn and either optimize_clones() or _gather_clone_loss().
summaries |= set(tf.get_collection(tf.GraphKeys.SUMMARIES,
first_clone.scope))
if total_loss is not None:
# Add total_loss to summary.
summaries.add(tf.summary.scalar('total_loss', total_loss))
if summaries:
# Merge all summaries together.
summary_op = tf.merge_summary(list(summaries), name='summary_op')
else:
summary_op = None
return DeployedModel(train_op, summary_op, total_loss, clones)
def _sum_clones_gradients(clone_grads):
"""Calculate the sum gradient for each shared variable across all clones.
This function assumes that the clone_grads has been scaled appropriately by
1 / num_clones.
Args:
clone_grads: A List of List of tuples (gradient, variable), one list per
`Clone`.
Returns:
List of tuples of (gradient, variable) where the gradient has been summed
across all clones.
"""
sum_grads = []
for grad_and_vars in zip(*clone_grads):
# Note that each grad_and_vars looks like the following:
# ((grad_var0_clone0, var0), ... (grad_varN_cloneN, varN))
grads = []
var = grad_and_vars[0][1]
for g, v in grad_and_vars:
assert v == var
if g is not None:
grads.append(g)
if grads:
if len(grads) > 1:
sum_grad = tf.add_n(grads, name=var.op.name + '/sum_grads')
else:
sum_grad = grads[0]
sum_grads.append((sum_grad, var))
return sum_grads
def _add_gradients_summaries(grads_and_vars):
"""Add histogram summaries to gradients.
Note: The summaries are also added to the SUMMARIES collection.
Args:
grads_and_vars: A list of gradient to variable pairs (tuples).
Returns:
The _list_ of the added summaries for grads_and_vars.
"""
summaries = []
for grad, var in grads_and_vars:
if grad is not None:
if isinstance(grad, tf.IndexedSlices):
grad_values = grad.values
else:
grad_values = grad
summaries.append(tf.histogram_summary(var.op.name + ':gradient',
grad_values))
summaries.append(tf.histogram_summary(var.op.name + ':gradient_norm',
tf.global_norm([grad_values])))
else:
tf.logging.info('Var %s has no gradient', var.op.name)
return summaries
class DeploymentConfig(object):
"""Configuration for deploying a model with `deploy()`.
You can pass an instance of this class to `deploy()` to specify exactly
how to deploy the model to build. If you do not pass one, an instance built
from the default deployment_hparams will be used.
"""
def __init__(self,
num_clones=1,
clone_on_cpu=False,
fake_multiple_gpus=False,
replica_id=0,
num_replicas=1,
num_ps_tasks=0,
worker_job_name='worker',
ps_job_name='ps'):
"""Create a DeploymentConfig.
The config describes how to deploy a model across multiple clones and
replicas. The model will be replicated `num_clones` times in each replica.
If `clone_on_cpu` is True, each clone will placed on CPU.
If `fake_multiple_gpus` is True, the model will only be replicated once on
a single GPU. This trick enables larger batch sizes, necessary for training
deep networks such as InceptionV3/V4, on a single GPU.
If `num_replicas` is 1, the model is deployed via a single process. In that
case `worker_device`, `num_ps_tasks`, and `ps_device` are ignored.
If `num_replicas` is greater than 1, then `worker_device` and `ps_device`
must specify TensorFlow devices for the `worker` and `ps` jobs and
`num_ps_tasks` must be positive.
Args:
num_clones: Number of model clones to deploy in each replica.
clone_on_cpu: If True clones would be placed on CPU.
replica_id: Integer. Index of the replica for which the model is
deployed. Usually 0 for the chief replica.
num_replicas: Number of replicas to use.
num_ps_tasks: Number of tasks for the `ps` job. 0 to not use replicas.
worker_job_name: A name for the worker job.
ps_job_name: A name for the parameter server job.
Raises:
ValueError: If the arguments are invalid.
"""
if num_replicas > 1:
if num_ps_tasks < 1:
raise ValueError('When using replicas num_ps_tasks must be positive')
if num_replicas > 1 or num_ps_tasks > 0:
if not worker_job_name:
raise ValueError('Must specify worker_job_name when using replicas')
if not ps_job_name:
raise ValueError('Must specify ps_job_name when using parameter server')
if replica_id >= num_replicas:
raise ValueError('replica_id must be less than num_replicas')
self._num_clones = num_clones
self._clone_on_cpu = clone_on_cpu
self._fake_multiple_gpus = fake_multiple_gpus
self._replica_id = replica_id
self._num_replicas = num_replicas
self._num_ps_tasks = num_ps_tasks
self._ps_device = '/job:' + ps_job_name if num_ps_tasks > 0 else ''
self._worker_device = '/job:' + worker_job_name if num_ps_tasks > 0 else ''
@property
def num_clones(self):
return self._num_clones
@property
def clone_on_cpu(self):
return self._clone_on_cpu
@property
def fake_multiple_gpus(self):
return self._fake_multiple_gpus
@property
def replica_id(self):
return self._replica_id
@property
def num_replicas(self):
return self._num_replicas
@property
def num_ps_tasks(self):
return self._num_ps_tasks
@property
def ps_device(self):
return self._ps_device
@property
def worker_device(self):
return self._worker_device
def caching_device(self):
"""Returns the device to use for caching variables.
Variables are cached on the worker CPU when using replicas.
Returns:
A device string or None if the variables do not need to be cached.
"""
if self._num_ps_tasks > 0:
return lambda op: op.device
else:
return None
def clone_device(self, clone_index):
"""Device used to create the clone and all the ops inside the clone.
Args:
clone_index: Int, representing the clone_index.
Returns:
A value suitable for `tf.device()`.
Raises:
ValueError: if `clone_index` is greater or equal to the number of clones".
"""
if clone_index >= self._num_clones:
raise ValueError('clone_index must be less than num_clones')
device = ''
if self._num_ps_tasks > 0:
device += self._worker_device
if self._clone_on_cpu:
device += '/device:CPU:0'
else:
if self._num_clones > 1 and not self._fake_multiple_gpus:
device += '/device:GPU:%d' % clone_index
return device
def clone_scope(self, clone_index):
"""Name scope to create the clone.
Args:
clone_index: Int, representing the clone_index.
Returns:
A name_scope suitable for `tf.name_scope()`.
Raises:
ValueError: if `clone_index` is greater or equal to the number of clones".
"""
if clone_index >= self._num_clones:
raise ValueError('clone_index must be less than num_clones')
scope = ''
if self._num_clones > 1:
scope = 'clone_%d' % clone_index
return scope
def optimizer_device(self):
"""Device to use with the optimizer.
Returns:
A value suitable for `tf.device()`.
"""
if self._num_ps_tasks > 0 or self._num_clones > 0:
return self._worker_device + '/device:CPU:0'
else:
return ''
def inputs_device(self):
"""Device to use to build the inputs.
Returns:
A value suitable for `tf.device()`.
"""
device = ''
if self._num_ps_tasks > 0:
device += self._worker_device
device += '/device:CPU:0'
return device
def variables_device(self):
"""Returns the device to use for variables created inside the clone.
Returns:
A value suitable for `tf.device()`.
"""
device = ''
if self._num_ps_tasks > 0:
device += self._ps_device
device += '/device:CPU:0'
class _PSDeviceChooser(object):
"""Slim device chooser for variables when using PS."""
def __init__(self, device, tasks):
self._device = device
self._tasks = tasks
self._task = 0
def choose(self, op):
if op.device:
return op.device
node_def = op if isinstance(op, tf.NodeDef) else op.node_def
if node_def.op == 'Variable':
t = self._task
self._task = (self._task + 1) % self._tasks
d = '%s/task:%d' % (self._device, t)
return d
else:
return op.device
if not self._num_ps_tasks:
return device
else:
chooser = _PSDeviceChooser(device, self._num_ps_tasks)
return chooser.choose
| [
"tensorflow.device",
"tensorflow.summary.scalar",
"tensorflow.python.ops.control_flow_ops.with_dependencies",
"tensorflow.get_collection",
"tensorflow.get_variable_scope",
"tensorflow.div",
"tensorflow.logging.info",
"tensorflow.name_scope",
"tensorflow.histogram_summary",
"tensorflow.group",
"tensorflow.add_n",
"tensorflow.global_norm"
] | SSD/deployment/model_deploy.py | [(121, 'collections.namedtuple', 'collections.namedtuple', (['"""Clone"""', "['outputs', 'scope', 'device']"], {}), False, 'import collections\n'), (128, 'collections.namedtuple', 'collections.namedtuple', (['"""DeployedModel"""', "['train_op', 'summary_op', 'total_loss', 'clones']"], {}), False, 'import collections\n'), (308, 'tensorflow.add_n', 'tf.add_n', (['clones_losses'], {'name': '"""total_loss"""'}), True, 'import tensorflow as tf\n'), (359, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.UPDATE_OPS', 'first_clone.scope'], {}), True, 'import tensorflow as tf\n'), (219, 'tensorflow.device', 'tf.device', (['clone.device'], {}), True, 'import tensorflow as tf\n'), (221, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.LOSSES', 'clone.scope'], {}), True, 'import tensorflow as tf\n'), (236, 'tensorflow.summary.scalar', 'tf.summary.scalar', (['"""clone_loss"""', 'clone_loss'], {}), True, 'import tensorflow as tf\n'), (239, 'tensorflow.summary.scalar', 'tf.summary.scalar', (['"""regularization_loss"""', 'regularization_loss'], {}), True, 'import tensorflow as tf\n'), (296, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.REGULARIZATION_LOSSES'], {}), True, 'import tensorflow as tf\n'), (351, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.SUMMARIES'], {}), True, 'import tensorflow as tf\n'), (223, 'tensorflow.add_n', 'tf.add_n', (['clone_losses'], {'name': '"""clone_loss"""'}), True, 'import tensorflow as tf\n'), (229, 'tensorflow.add_n', 'tf.add_n', (['regularization_losses'], {'name': '"""regularization_loss"""'}), True, 'import tensorflow as tf\n'), (233, 'tensorflow.add_n', 'tf.add_n', (['all_losses'], {}), True, 'import tensorflow as tf\n'), (264, 'tensorflow.device', 'tf.device', (['clone.device'], {}), True, 'import tensorflow as tf\n'), (299, 'tensorflow.name_scope', 'tf.name_scope', (['clone.scope'], {}), True, 'import tensorflow as tf\n'), (387, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.REGULARIZATION_LOSSES'], {}), True, 'import tensorflow as tf\n'), (402, 'tensorflow.get_collection', 'tf.get_collection', (['tf.GraphKeys.SUMMARIES', 'first_clone.scope'], {}), True, 'import tensorflow as tf\n'), (474, 'tensorflow.logging.info', 'tf.logging.info', (['"""Var %s has no gradient"""', 'var.op.name'], {}), True, 'import tensorflow as tf\n'), (225, 'tensorflow.div', 'tf.div', (['clone_loss', '(1.0 * num_clones)'], {'name': '"""scaled_clone_loss"""'}), True, 'import tensorflow as tf\n'), (382, 'tensorflow.group', 'tf.group', (['*update_ops'], {}), True, 'import tensorflow as tf\n'), (383, 'tensorflow.python.ops.control_flow_ops.with_dependencies', 'control_flow_ops.with_dependencies', (['[update_op]', 'total_loss'], {'name': '"""train_op"""'}), False, 'from tensorflow.python.ops import control_flow_ops\n'), (398, 'tensorflow.add_n', 'tf.add_n', (['clones_losses'], {'name': '"""total_loss"""'}), True, 'import tensorflow as tf\n'), (407, 'tensorflow.summary.scalar', 'tf.summary.scalar', (['"""total_loss"""', 'total_loss'], {}), True, 'import tensorflow as tf\n'), (444, 'tensorflow.add_n', 'tf.add_n', (['grads'], {'name': "(var.op.name + '/sum_grads')"}), True, 'import tensorflow as tf\n'), (469, 'tensorflow.histogram_summary', 'tf.histogram_summary', (["(var.op.name + ':gradient')", 'grad_values'], {}), True, 'import tensorflow as tf\n'), (193, 'tensorflow.device', 'tf.device', (['clone_device'], {}), True, 'import tensorflow as tf\n'), (390, 'tensorflow.name_scope', 'tf.name_scope', (['clone.scope'], {}), True, 'import tensorflow as tf\n'), (472, 'tensorflow.global_norm', 'tf.global_norm', (['[grad_values]'], {}), True, 'import tensorflow as tf\n'), (194, 'tensorflow.get_variable_scope', 'tf.get_variable_scope', ([], {}), True, 'import tensorflow as tf\n')] |
LinghengMeng/spinningup | f52615a0081ac6c20aade7efd55c2a4a7047c968 | import numpy as np
import tensorflow as tf
class VariationalDense:
"""Variational Dense Layer Class"""
def __init__(self, n_in, n_out, dropout_mask_ph,
model_prob=0.9, model_lam=3e-4, activation=None, name="hidden"):
self.model_prob = model_prob # probability to keep units
self.model_lam = model_lam # l^2 / 2*tau: l=1e-2, tau=[0.1, 0.15, 0.2]
self.dropout_mask_ph = dropout_mask_ph # placeholder: p_s * i_s
self.p_s = tf.shape(self.dropout_mask_ph)[0] # post sample size
self.DM = tf.zeros(shape=[self.p_s, n_in, n_in]) # Dropout masks: p_s * i_s * i_s
self.DM = tf.linalg.set_diag(self.DM, self.dropout_mask_ph)
kernel_initializer = tf.initializers.truncated_normal(mean=0.0, stddev=0.01)
self.model_W = tf.get_variable("{}_W".format(name), initializer=kernel_initializer([n_in, n_out])) # variational parameters
self.model_b = tf.get_variable("{}_b".format(name), initializer=tf.zeros([n_out]))
self.model_DMW = tf.einsum('pij,jk->pik', self.DM, self.model_W) # Masked weight: p_s * i_s * o_s
self.model_tiled_b = tf.tile(tf.reshape(self.model_b, [1, n_out]), [self.p_s, 1])
if activation is None:
self.activation = tf.identity
else:
self.activation = activation
def __call__(self, X):
# X shape (p_s * b_s * i_s)
net_input = tf.einsum('pbi,pio->pbo', X, self.model_DMW) + self.model_tiled_b
output = self.activation(net_input) # output: p_s * b_s * o_s
return output
@property
def regularization(self):
return self.model_lam * (
self.model_prob * tf.reduce_sum(tf.square(self.model_W)) +
tf.reduce_sum(tf.square(self.model_b))
)
# def generate_dropout_mask_placeholders(x_dim, hidden_sizes=(32,)):
# dropout_mask_placeholders = []
# for l, size in enumerate((x_dim, *hidden_sizes)):
# dropout_mask_placeholders.append(tf.placeholder(dtype=tf.float32, shape=(size,),
# name='dropout_mask_{}'.format(l)))
# return dropout_mask_placeholders
class DropoutMaskGenerator:
"""Class used to generate dropout mask."""
def __init__(self,x_dim, hidden_sizes=(32,), model_prob=0.9):
self.x_dim = x_dim
self.hidden_sizes = hidden_sizes
self.model_prob = model_prob
def generate_dropout_mask_placeholders(self):
dropout_mask_placeholders = []
for l, size in enumerate((self.x_dim, *self.hidden_sizes)):
dropout_mask_placeholders.append(tf.placeholder(dtype=tf.float32, shape=(None, size),
name='dropout_mask_{}'.format(l)))
return dropout_mask_placeholders
def generate_dropout_mask(self, post_size):
# TODO: generate masks accroding to post_size
new_dropout_masks = []
for l, size in enumerate((self.x_dim, *self.hidden_sizes)):
new_dropout_masks.append(np.random.binomial(1, self.model_prob, (post_size, size)))
return new_dropout_masks
def placeholder(dim=None):
return tf.placeholder(dtype=tf.float32, shape=(None,dim) if dim else (None,))
def placeholders(*args):
return [placeholder(dim) for dim in args]
# TODO: add batch normalization
def mlp_variational(x, dropout_mask_phs, hidden_sizes=(32,),
activation=tf.tanh, output_activation=None, dropout_rate=0.1):
# layer_sizes = (input_size, h1, h2, ..., output_size)
layer_sizes = hidden_sizes.copy()
layer_sizes.insert(0, x.shape.as_list()[1])
# tile x from shape (b_s * i_s) to (p_s * b_s * i_s)
post_size = tf.shape(dropout_mask_phs[0])[0]
x = tf.tile(tf.reshape(x, [1, tf.shape(x)[0], tf.shape(x)[1]]), [post_size, 1, 1])
# TODO: no dropout on input
regularization = 0
# Create hidden layers
for layer_i in range(1,len(layer_sizes)-1):
hidden_layer = VariationalDense(n_in=layer_sizes[layer_i-1],
n_out=layer_sizes[layer_i],
dropout_mask_ph=dropout_mask_phs[layer_i-1],
model_prob=1.0 - dropout_rate,
model_lam=3e-4,
activation=activation,
name="h{}".format(layer_i + 1))
x = hidden_layer(x)
regularization += hidden_layer.regularization
# Output layer
out_layer = VariationalDense(n_in=layer_sizes[-2],
n_out=layer_sizes[-1],
dropout_mask_ph=dropout_mask_phs[-1],
model_prob=1.0-dropout_rate,
model_lam=3e-4,
activation=output_activation,
name="Out")
x = out_layer(x)
regularization += out_layer.regularization
return x, regularization
def mlp_dropout(x, hidden_sizes=(32,), activation=tf.tanh, output_activation=None, dropout_rate=0):
for h in hidden_sizes[:-1]:
x = tf.layers.dense(x, units=h, activation=activation)
x = tf.layers.dropout(x, rate=dropout_rate, training=True)
x = tf.layers.dropout(x, rate=dropout_rate, training=True)
return tf.layers.dense(x, units=hidden_sizes[-1], activation=output_activation)
def mlp(x, hidden_sizes=(32,), activation=tf.tanh, output_activation=None):
for h in hidden_sizes[:-1]:
x = tf.layers.dense(x, units=h, activation=activation)
return tf.layers.dense(x, units=hidden_sizes[-1], activation=output_activation)
def get_vars(scope):
return [x for x in tf.global_variables() if scope in x.name]
def count_vars(scope):
v = get_vars(scope)
return sum([np.prod(var.shape.as_list()) for var in v])
# """
# Random Network Distillation
# """
# def random_net_distill(x_ph, a_ph, hidden_sizes=(400,300), activation=tf.nn.relu,
# output_activation=tf.tanh, action_space=None):
# act_dim = a_ph.shape.as_list()[-1]
# act_limit = action_space.high[0]
# with tf.variable_scope('rnd_targ_act'):
# rnd_targ_act = act_limit * mlp(x_ph, list(hidden_sizes) + [act_dim], activation, output_activation)
# with tf.variable_scope('rnd_pred_act'):
# rnd_pred_act = act_limit * mlp(x_ph, list(hidden_sizes) + [act_dim], activation, output_activation)
# with tf.variable_scope('rnd_targ_cri'):
# rnd_targ_cri = tf.squeeze(mlp(tf.concat([x_ph, a_ph], axis=-1), list(hidden_sizes) + [1], activation, None), axis=1)
# with tf.variable_scope('rnd_pred_cri'):
# rnd_pred_cri = tf.squeeze(mlp(tf.concat([x_ph, a_ph], axis=-1), list(hidden_sizes) + [1], activation, None),
# axis=1)
# return rnd_targ_act, rnd_pred_act, rnd_targ_cri, rnd_pred_cri
"""
Random Network Distillation
"""
def random_net_distill(x_ph, a_ph, hidden_sizes=(400,300), activation=tf.nn.relu,
output_activation=tf.tanh, action_space=None, dropout_rate=0.1):
act_dim = a_ph.shape.as_list()[-1]
act_limit = action_space.high[0]
with tf.variable_scope('rnd_targ_act'):
rnd_targ_act = act_limit * mlp(x_ph, list(hidden_sizes) + [act_dim], activation, output_activation)
with tf.variable_scope('rnd_pred_act'):
# rnd_pred_act = act_limit * mlp(x_ph, list(hidden_sizes) + [act_dim], activation, output_activation)
rnd_pred_act_in_dim = x_ph.shape.as_list()[1]
rnd_pred_act_dropout_mask_generator = DropoutMaskGenerator(rnd_pred_act_in_dim,
hidden_sizes, model_prob=1.0 - dropout_rate)
rnd_pred_act_dropout_mask_phs = rnd_pred_act_dropout_mask_generator.generate_dropout_mask_placeholders()
rnd_pred_act, rnd_pred_act_reg = mlp_variational(x_ph, rnd_pred_act_dropout_mask_phs,
list(hidden_sizes) + [act_dim], activation,
output_activation, dropout_rate)
rnd_pred_act = act_limit * rnd_pred_act
with tf.variable_scope('rnd_targ_cri'):
rnd_targ_cri = tf.squeeze(mlp(tf.concat([x_ph, a_ph], axis=-1), list(hidden_sizes) + [1], activation, None), axis=1)
with tf.variable_scope('rnd_pred_cri'):
rnd_pred_cri = tf.squeeze(mlp(tf.concat([x_ph, a_ph], axis=-1), list(hidden_sizes) + [1], activation, None),
axis=1)
rnd_pred_cri_in_ph = tf.concat([x_ph, a_ph], axis=-1)
rnd_pred_cri_in_dim = rnd_pred_cri_in_ph.shape.as_list()[1]
rnd_pred_cri_dropout_mask_generator = DropoutMaskGenerator(rnd_pred_cri_in_dim,
hidden_sizes, model_prob=1.0 - dropout_rate)
rnd_pred_cri_dropout_mask_phs = rnd_pred_cri_dropout_mask_generator.generate_dropout_mask_placeholders()
rnd_pred_cri, rnd_pred_cri_reg = mlp_variational(rnd_pred_cri_in_ph, rnd_pred_cri_dropout_mask_phs,
list(hidden_sizes) + [1],
activation, None, dropout_rate)
rnd_pred_cri = tf.squeeze(rnd_pred_cri, axis=2)
return rnd_targ_act,\
rnd_pred_act, rnd_pred_act_reg, rnd_pred_act_dropout_mask_generator, rnd_pred_act_dropout_mask_phs,\
rnd_targ_cri,\
rnd_pred_cri, rnd_pred_cri_reg, rnd_pred_cri_dropout_mask_generator, rnd_pred_cri_dropout_mask_phs
"""
Actor-Critics
"""
def mlp_actor_critic(x, a, hidden_sizes=(400,300), activation=tf.nn.relu,
output_activation=tf.tanh, action_space=None,
dropout_rate=0, nn_type='mlp_variational'):
act_dim = a.shape.as_list()[-1]
act_limit = action_space.high[0]
if nn_type == 'mlp':
with tf.variable_scope('pi'):
pi = act_limit * mlp(x, list(hidden_sizes) + [act_dim], activation, output_activation)
with tf.variable_scope('q1'):
q1 = tf.squeeze(mlp(tf.concat([x, a], axis=-1), list(hidden_sizes) + [1], activation, None), axis=1)
with tf.variable_scope('q2'):
q2 = tf.squeeze(mlp(tf.concat([x, a], axis=-1), list(hidden_sizes) + [1], activation, None), axis=1)
with tf.variable_scope('q1', reuse=True):
q1_pi = tf.squeeze(mlp(tf.concat([x, pi], axis=-1), list(hidden_sizes) + [1], activation, None), axis=1)
elif nn_type == 'mlp_dropout':
with tf.variable_scope('pi'):
pi = act_limit * mlp_dropout(x, list(hidden_sizes)+[act_dim], activation, output_activation)
with tf.variable_scope('q'):
q = tf.squeeze(mlp_dropout(tf.concat([x,a], axis=-1), list(hidden_sizes)+[1], activation, None, dropout_rate), axis=1)
with tf.variable_scope('q', reuse=True):
q_pi = tf.squeeze(mlp_dropout(tf.concat([x,pi], axis=-1), list(hidden_sizes)+[1], activation, None, dropout_rate), axis=1)
elif nn_type == 'mlp_variational':
with tf.variable_scope('pi'):
pi_in_dim = x.shape.as_list()[1]
pi_dropout_mask_generator = DropoutMaskGenerator(pi_in_dim, hidden_sizes, model_prob=1.0 - dropout_rate)
pi_dropout_mask_phs = pi_dropout_mask_generator.generate_dropout_mask_placeholders()
pi, pi_reg = mlp_variational(x, pi_dropout_mask_phs, list(hidden_sizes) + [act_dim], activation, output_activation, dropout_rate)
pi = act_limit * pi
with tf.variable_scope('q1'):
q1_in_ph = tf.concat([x, a], axis=-1)
q1_in_dim = q1_in_ph.shape.as_list()[1]
q1_dropout_mask_generator = DropoutMaskGenerator(q1_in_dim, hidden_sizes, model_prob=1.0 - dropout_rate)
q1_dropout_mask_phs = q1_dropout_mask_generator.generate_dropout_mask_placeholders()
q1, q1_reg = mlp_variational(q1_in_ph, q1_dropout_mask_phs, list(hidden_sizes) + [1],
activation, None, dropout_rate)
q1 = tf.squeeze(q1, axis=2)
with tf.variable_scope('q1', reuse=True):
q1_pi, q1_pi_reg = mlp_variational(tf.concat([x, pi[0]], axis=-1), q1_dropout_mask_phs, list(hidden_sizes) + [1],
activation, None, dropout_rate)
q1_pi = tf.squeeze(q1_pi, axis=2)
with tf.variable_scope('q2'):
q2_in_ph = tf.concat([x, a], axis=-1)
q2_in_dim = q2_in_ph.shape.as_list()[1]
q2_dropout_mask_generator = DropoutMaskGenerator(q2_in_dim, hidden_sizes, model_prob=1.0 - dropout_rate)
q2_dropout_mask_phs = q2_dropout_mask_generator.generate_dropout_mask_placeholders()
q2, q2_reg = mlp_variational(q2_in_ph, q2_dropout_mask_phs, list(hidden_sizes) + [1],
activation, None, dropout_rate)
q2 = tf.squeeze(q2, axis=2)
else:
raise ValueError('Please choose a proper nn_type!')
return pi, pi_reg, pi_dropout_mask_generator, pi_dropout_mask_phs,\
q1, q1_reg, q1_dropout_mask_generator, q1_dropout_mask_phs, q1_pi, q1_pi_reg,\
q2, q2_reg, q2_dropout_mask_generator, q2_dropout_mask_phs
| [
"tensorflow.concat",
"tensorflow.zeros",
"tensorflow.shape",
"tensorflow.layers.dropout",
"tensorflow.reshape",
"tensorflow.global_variables",
"tensorflow.layers.dense",
"tensorflow.placeholder",
"tensorflow.initializers.truncated_normal",
"tensorflow.einsum",
"tensorflow.squeeze",
"numpy.random.binomial",
"tensorflow.linalg.set_diag",
"tensorflow.square",
"tensorflow.variable_scope"
] | spinup/algos/ude_td3_batchP/core.py | [(70, 'tensorflow.placeholder', 'tf.placeholder', ([], {'dtype': 'tf.float32', 'shape': '((None, dim) if dim else (None,))'}), True, 'import tensorflow as tf\n'), (116, 'tensorflow.layers.dropout', 'tf.layers.dropout', (['x'], {'rate': 'dropout_rate', 'training': '(True)'}), True, 'import tensorflow as tf\n'), (117, 'tensorflow.layers.dense', 'tf.layers.dense', (['x'], {'units': 'hidden_sizes[-1]', 'activation': 'output_activation'}), True, 'import tensorflow as tf\n'), (122, 'tensorflow.layers.dense', 'tf.layers.dense', (['x'], {'units': 'hidden_sizes[-1]', 'activation': 'output_activation'}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.zeros', 'tf.zeros', ([], {'shape': '[self.p_s, n_in, n_in]'}), True, 'import tensorflow as tf\n'), (14, 'tensorflow.linalg.set_diag', 'tf.linalg.set_diag', (['self.DM', 'self.dropout_mask_ph'], {}), True, 'import tensorflow as tf\n'), (16, 'tensorflow.initializers.truncated_normal', 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a]'], {'axis': '(-1)'}), True, 'import tensorflow as tf\n'), (212, 'tensorflow.concat', 'tf.concat', (['[x, pi]'], {'axis': '(-1)'}), True, 'import tensorflow as tf\n'), (231, 'tensorflow.concat', 'tf.concat', (['[x, pi[0]]'], {'axis': '(-1)'}), True, 'import tensorflow as tf\n')] |
yyht/PyCLUE_albert | 06f131241163a745747da33c5f563abe4413897b | # -*- coding: utf-8 -*-
# @Author: Liu Shaoweihua
# @Date: 2019-11-18
# Copyright 2018 The Google AI Language Team Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import re
import six
import copy
import json
import math
import collections
import tensorflow as tf
def get_shape_list(tensor, expected_rank=None, name=None):
"""Returns a list of the shape of tensor, preferring static dimensions.
Args:
tensor: A tf.Tensor object to find the shape of.
expected_rank: (optional) int. The expected rank of `tensor`. If this is
specified and the `tensor` has a different rank, and exception will be
thrown.
name: Optional name of the tensor for the error message.
Returns:
A list of dimensions of the shape of tensor. All static dimensions will
be returned as python integers, and dynamic dimensions will be returned
as tf.Tensor scalars.
"""
if name is None:
name = tensor.name
if expected_rank is not None:
assert_rank(tensor, expected_rank, name)
shape = tensor.shape.as_list()
non_static_indexes = []
for (index, dim) in enumerate(shape):
if dim is None:
non_static_indexes.append(index)
if not non_static_indexes:
return shape
dyn_shape = tf.shape(tensor)
for index in non_static_indexes:
shape[index] = dyn_shape[index]
return shape
def reshape_to_matrix(input_tensor):
"""Reshapes a >= rank 2 tensor to a rank 2 tensor (i.e., a matrix)."""
ndims = input_tensor.shape.ndims
if ndims < 2:
raise ValueError("Input tensor must have at least rank 2. Shape = %s" %
(input_tensor.shape))
if ndims == 2:
return input_tensor
width = input_tensor.shape[-1]
output_tensor = tf.reshape(input_tensor, [-1, width])
return output_tensor
def reshape_from_matrix(output_tensor, orig_shape_list):
"""Reshapes a rank 2 tensor back to its original rank >= 2 tensor."""
if len(orig_shape_list) == 2:
return output_tensor
output_shape = get_shape_list(output_tensor)
orig_dims = orig_shape_list[0:-1]
width = output_shape[-1]
return tf.reshape(output_tensor, orig_dims + [width])
def assert_rank(tensor, expected_rank, name=None):
"""Raises an exception if the tensor rank is not of the expected rank.
Args:
tensor: A tf.Tensor to check the rank of.
expected_rank: Python integer or list of integers, expected rank.
name: Optional name of the tensor for the error message.
Raises:
ValueError: If the expected shape doesn't match the actual shape.
"""
if name is None:
name = tensor.name
expected_rank_dict = {}
if isinstance(expected_rank, six.integer_types):
expected_rank_dict[expected_rank] = True
else:
for x in expected_rank:
expected_rank_dict[x] = True
actual_rank = tensor.shape.ndims
if actual_rank not in expected_rank_dict:
scope_name = tf.get_variable_scope().name
raise ValueError(
"For the tensor `%s` in scope `%s`, the actual rank "
"`%d` (shape = %s) is not equal to the expected rank `%s`" %
(name, scope_name, actual_rank, str(tensor.shape), str(expected_rank)))
def gather_indexes(sequence_tensor, positions):
"""Gathers the vectors at the specific positions over a minibatch."""
sequence_shape = get_shape_list(sequence_tensor, expected_rank=3)
batch_size = sequence_shape[0]
seq_length = sequence_shape[1]
width = sequence_shape[2]
flat_offsets = tf.reshape(
tf.range(0, batch_size, dtype=tf.int32) * seq_length, [-1, 1])
flat_positions = tf.reshape(positions + flat_offsets, [-1])
flat_sequence_tensor = tf.reshape(sequence_tensor,
[batch_size * seq_length, width])
output_tensor = tf.gather(flat_sequence_tensor, flat_positions)
return output_tensor
# add sequence mask for:
# 1. random shuffle lm modeling---xlnet with random shuffled input
# 2. left2right and right2left language modeling
# 3. conditional generation
def generate_seq2seq_mask(attention_mask, mask_sequence, seq_type, **kargs):
if seq_type == 'seq2seq':
if mask_sequence is not None:
seq_shape = get_shape_list(mask_sequence, expected_rank=2)
seq_len = seq_shape[1]
ones = tf.ones((1, seq_len, seq_len))
a_mask = tf.matrix_band_part(ones, -1, 0)
s_ex12 = tf.expand_dims(tf.expand_dims(mask_sequence, 1), 2)
s_ex13 = tf.expand_dims(tf.expand_dims(mask_sequence, 1), 3)
a_mask = (1 - s_ex13) * (1 - s_ex12) + s_ex13 * a_mask
# generate mask of batch x seq_len x seq_len
a_mask = tf.reshape(a_mask, (-1, seq_len, seq_len))
out_mask = attention_mask * a_mask
else:
ones = tf.ones_like(attention_mask[:1])
mask = (tf.matrix_band_part(ones, -1, 0))
out_mask = attention_mask * mask
else:
out_mask = attention_mask
return out_mask | [
"tensorflow.range",
"tensorflow.shape",
"tensorflow.matrix_band_part",
"tensorflow.reshape",
"tensorflow.ones_like",
"tensorflow.ones",
"tensorflow.expand_dims",
"tensorflow.gather",
"tensorflow.get_variable_scope"
] | PyCLUE/utils/utils/classifier_utils/bert_utils.py | [(65, 'tensorflow.shape', 'tf.shape', (['tensor'], {}), True, 'import tensorflow as tf\n'), (80, 'tensorflow.reshape', 'tf.reshape', (['input_tensor', '[-1, width]'], {}), True, 'import tensorflow as tf\n'), (93, 'tensorflow.reshape', 'tf.reshape', (['output_tensor', '(orig_dims + [width])'], {}), True, 'import tensorflow as tf\n'), (133, 'tensorflow.reshape', 'tf.reshape', (['(positions + flat_offsets)', '[-1]'], {}), True, 'import tensorflow as tf\n'), (134, 'tensorflow.reshape', 'tf.reshape', (['sequence_tensor', '[batch_size * seq_length, width]'], {}), True, 'import tensorflow as tf\n'), (136, 'tensorflow.gather', 'tf.gather', (['flat_sequence_tensor', 'flat_positions'], {}), True, 'import tensorflow as tf\n'), (118, 'tensorflow.get_variable_scope', 'tf.get_variable_scope', ([], {}), True, 'import tensorflow as tf\n'), (132, 'tensorflow.range', 'tf.range', (['(0)', 'batch_size'], {'dtype': 'tf.int32'}), True, 'import tensorflow as tf\n'), (148, 'tensorflow.ones', 'tf.ones', (['(1, seq_len, seq_len)'], {}), True, 'import tensorflow as tf\n'), (149, 'tensorflow.matrix_band_part', 'tf.matrix_band_part', (['ones', '(-1)', '(0)'], {}), True, 'import tensorflow as tf\n'), (154, 'tensorflow.reshape', 'tf.reshape', (['a_mask', '(-1, seq_len, seq_len)'], {}), True, 'import tensorflow as tf\n'), (157, 'tensorflow.ones_like', 'tf.ones_like', (['attention_mask[:1]'], {}), True, 'import tensorflow as tf\n'), (158, 'tensorflow.matrix_band_part', 'tf.matrix_band_part', (['ones', '(-1)', '(0)'], {}), True, 'import tensorflow as tf\n'), (150, 'tensorflow.expand_dims', 'tf.expand_dims', (['mask_sequence', '(1)'], {}), True, 'import tensorflow as tf\n'), (151, 'tensorflow.expand_dims', 'tf.expand_dims', (['mask_sequence', '(1)'], {}), True, 'import tensorflow as tf\n')] |
JJXiangJiaoJun/DQN_FlappyBird | 4d7b56427bf3e0c38f67298ac7e4bf6f5ae318db | #coding=utf-8
from __future__ import print_function
#导入一些必要的包
import tensorflow as tf
import cv2
import sys
sys.path.append("game/")
import wrapped_flappy_bird as game
import random
import numpy as np
from collections import deque
class Flappy_Bird(object):
def __init__(self):
self.GAME = 'bird' # 网络训练过程中保存文件夹的名字
self.ACTIONS = 2 # 一共有两种动作
self.GAMMA = 0.99 # Qlearning中 对Q值更新的权重
self.OBSERVE = 10000 # 训练之前需要探索OBSERVE步，之后再用minibatch对DQN进行训练
self.EXPLORE = 3000000 # 该步数之后停止随机探索
self.FINAL_EPSILON = 0.0001
self.INITIAL_EPSILON = 0.0001
self.epsilon = self.INITIAL_EPSILON
self.REPLAY_MEMORY = 50000 # 之前训练需要记忆的步数
self.BATCH = 32 # minibatch大小
self.FRAME_PER_ACTION = 1 # 每一帧的动作数量
self.time = 0
self.stored_memory =deque() #保存训练数据的队列
self.s,self.readout,self.fc1 = self.creat_network() #创建一个网络 其中s为输入状态，readout为网络输出表示输出的Q值
self.optimizer ,self.y,self.a = self.creat_optimizer(self.readout) #创建优化方案，使用ADAOPTIMIZAL优化器
self.game_state = game.GameState()
self.sess = tf.Session() # 创建类的TensorFlow会话
self.start = self.init_step() #对创建系统的初始状态
self.Saver = self.restore_param() #重新导入系统的参数
#初始化过程，进行第一次游戏等等，如读取已经保存的模型参数等
def init_step(self):
#获得游戏中的第一幅图像
do_nothing = np.zeros(self.ACTIONS)
do_nothing[0]=1
x_t,r_0,terminal =self.game_state.frame_step(do_nothing)
x_t = cv2.cvtColor(cv2.resize(x_t,(80,80)),cv2.COLOR_BGR2GRAY)
ret,x_t = cv2.threshold(x_t,1,255,cv2.THRESH_BINARY)
s_t = np.stack((x_t,x_t,x_t,x_t),axis=2)
return s_t
def restore_param(self):
Saver = tf.train.Saver()
self.sess.run(tf.global_variables_initializer())
checkpoint = tf.train.get_checkpoint_state("saved_networks")
if checkpoint and checkpoint.model_checkpoint_path:
Saver.restore(self.sess,checkpoint.model_checkpoint_path)
print("Successfully loaded",checkpoint.model_checkpoint_path)
else:
print("Could not find old network weights")
return Saver
# 定义一个weight，其中命名空间为name，形状为shape
def weight_variable(self,name, shape):
with tf.variable_scope(name) as scope:
weights = tf.get_variable('weights',
shape=shape,
dtype=tf.float32,
initializer=tf.truncated_normal_initializer(stddev=0.1, dtype=tf.float32))
return weights
def bias_variable(self,name, shape):
with tf.variable_scope(name) as scope:
biases = tf.get_variable('biaess',
shape=shape,
dtype=tf.float32,
initializer=tf.constant_initializer(0.01))
return biases
# 定义一个卷积层，命名空间为name，输入为x，卷积核为W，步长为stride,偏差为bias,激活函数默认为relu
def conv2d(self,name, x, W, stride, bias):
with tf.variable_scope(name) as scope:
conv = tf.nn.conv2d(x, W, [1, stride, stride, 1], padding='SAME')
pre_activation = tf.nn.bias_add(conv, bias)
output = tf.nn.relu(pre_activation, name=scope.name)
return output
# 定义一个池化层，默认为max_pooling
def max_pool_2x2(self,name, x):
with tf.variable_scope(name) as scope:
maxpool = tf.nn.max_pool(x, [1, 2, 2, 1], [1, 2, 2, 1], padding='SAME')
return maxpool
# 创建DQN
def creat_network(self):
# 网络的参数，权重
W_conv1 = self.weight_variable('W_conv1', [8, 8, 4, 32]) # 第一层卷积层为8x8的卷积核，输入通道为4，输出通道为32
b_conv1 = self.bias_variable('b_conv1', [32])
W_conv2 = self.weight_variable('W_conv2', [4, 4, 32, 64]) # 第二层卷积层为4x4的卷积核,输入通道为32，输出通道为64
b_conv2 = self.bias_variable('b_conv2', [64])
W_conv3 = self.weight_variable('W_conv3', [3, 3, 64, 64]) # 第三层卷积层为3x3的卷积核，输入通道为64，输出通道为64
b_conv3 = self.bias_variable('b_conv3', [64])
W_fc1 = self.weight_variable('W_fc1', [1600, 512])
b_fc1 = self.bias_variable('b_fc1', [512])
W_fc2 = self.weight_variable('W_fc2', [512, self.ACTIONS])
b_fc2 = self.bias_variable('b_fc2', [self.ACTIONS])
s = tf.placeholder("float", [None, 80, 80, 4]) # 输入层，输入图像为80x80的4通道图像
h_conv1 = self.conv2d('h_conv1', s, W_conv1, 4, b_conv1) # 构造第一个卷积层输出为conv1
h_pool1 = self.max_pool_2x2('h_pool1', h_conv1)
h_conv2 = self.conv2d('h_conv2', h_pool1, W_conv2, 2, b_conv2)
h_conv3 = self.conv2d('h_conv3', h_conv2, W_conv3, 1, b_conv3)
h_conv3_flat = tf.reshape(h_conv3, [-1, 1600], 'h_conv3_flat')
h_fc1 = tf.nn.relu(tf.add(tf.matmul(h_conv3_flat, W_fc1), b_fc1, 'h_fc1'))
readout = tf.add(tf.matmul(h_fc1, W_fc2), b_fc2, 'h_fc2')
return s, readout, h_fc1
def creat_optimizer(self,readout):
action = tf.placeholder(tf.float32,[None,self.ACTIONS])
y = tf.placeholder(tf.float32,[None])
readout_action = tf.reduce_sum(tf.multiply(readout,action),reduction_indices=1)
cost =tf.reduce_mean(tf.square(y-readout_action))
train_step = tf.train.AdamOptimizer(1e-6).minimize(cost)
return train_step,y,action
#输入一个初始状态s_t，时间为t，之后进行游戏
def process_game(self,s_t):
#通过CNN运算得到Q值向量
read_out_t = self.sess.run(self.readout,feed_dict={self.s:[s_t]})[0]
a_t =np.zeros([self.ACTIONS])
action_index =0
if self.time % self.FRAME_PER_ACTION == 0:
if random.random()<= self.epsilon: #随机选择动作
print("-----------随机选择动作--------------")
action_index = random.randrange(self.ACTIONS)
a_t[action_index]=1
else: #选择Q值最大的动作
action_index = np.argmax(read_out_t)
a_t[random.randrange(self.ACTIONS)] = 1
else:
a_t[0] = 1 #如果没有到当前帧，那么不做动作
#减少epsilon的值
if self.epsilon>self.FINAL_EPSILON and self.time>self.OBSERVE:
self.epsilon -= (self.INITIAL_EPSILON-self.FINAL_EPSILON)/self.EXPLORE
#运行刚刚选择的动作，获得下一个奖励和动作
x_t1_colored,r_t,terminal = self.game_state.frame_step(a_t)
x_t1 =cv2.cvtColor(cv2.resize(x_t1_colored,(80,80)),cv2.COLOR_BGR2GRAY)
ret,x_t1 = cv2.threshold(x_t1,1,255,cv2.THRESH_BINARY)
x_t1 = np.reshape(x_t1,(80,80,1))
#s_t1为下一帧的状态
s_t1 = np.append(x_t1,s_t[:,:,:3],axis=2)
#保存该状态为以后训练CNN准备 (原来状态+动作+奖励+下一次状态+游戏是否结束)
self.stored_memory.append([s_t,a_t,r_t,s_t1,terminal])
if(len(self.stored_memory)>self.REPLAY_MEMORY):
self.stored_memory.popleft()
if self.time>self.OBSERVE:
#如果大于探索步，那么进行CNN训练
self.train_network()
self.time+=1 #步数增加1
if self.time % 10000 == 0:
self.Saver.save(self.sess,'saved_networks/'+self.GAME+'-dqn',global_step=self.time)
#打印状态
if self.time <= self.OBSERVE:
state = "observe"
elif self.time>self.OBSERVE and self.time <= self.OBSERVE+self.EXPLORE:
state = "explore"
else:
state = "train"
print("TIMESTEP", self.time, "/ STATE", state,\
"/ EPSILON", self.epsilon, "/ ACTION", action_index, "/ REWARD", r_t,\
"/ Q_MAX %e" % np.max(read_out_t))
return s_t1
def train_network(self,):
minibatch =random.sample(self.stored_memory,self.BATCH) #队列中进行随机采样
s_j_batch = [d[0] for d in minibatch]
a_batch = [d[1] for d in minibatch]
r_batch = [d[2] for d in minibatch]
s_j1_batch = [d[3] for d in minibatch]
y_batch = []
readout_j1_batch = self.sess.run(self.readout,feed_dict={self.s:s_j1_batch} ) #进行一次前向运算，算出下一个状态的Q值
for i in range(0,len(minibatch)):
terminal = minibatch[i][4]
#如果游戏结束，那么只奖励当前分数
if terminal:
y_batch.append(r_batch[i])
#否则奖励总奖励
else:
y_batch.append(r_batch[i]+self.GAMMA*np.max(readout_j1_batch[i]))
#下面进行梯度下降
self.sess.run(self.optimizer,feed_dict={
self.y:y_batch,
self.a:a_batch,
self.s:s_j_batch
})
def playGame():
flappy_bird = Flappy_Bird()
train_sta = flappy_bird.init_step()
while "flappy_bird"!="angry_bird":
train_sta = flappy_bird.process_game(train_sta)
if __name__ == '__main__':
playGame()
| [
"tensorflow.nn.max_pool",
"numpy.max",
"tensorflow.train.AdamOptimizer",
"tensorflow.nn.conv2d",
"numpy.reshape",
"tensorflow.truncated_normal_initializer",
"numpy.stack",
"numpy.argmax",
"tensorflow.Session",
"tensorflow.square",
"tensorflow.train.Saver",
"numpy.zeros",
"tensorflow.matmul",
"tensorflow.placeholder",
"tensorflow.global_variables_initializer",
"numpy.append",
"tensorflow.train.get_checkpoint_state",
"tensorflow.nn.bias_add",
"tensorflow.nn.relu",
"tensorflow.multiply",
"tensorflow.reshape",
"tensorflow.constant_initializer",
"tensorflow.variable_scope"
] | DQN_FlappyBird.py | [(8, 'sys.path.append', 'sys.path.append', (['"""game/"""'], {}), False, 'import sys\n'), (30, 'collections.deque', 'deque', ([], {}), False, 'from collections import deque\n'), (33, 'wrapped_flappy_bird.GameState', 'game.GameState', ([], {}), True, 'import wrapped_flappy_bird as game\n'), (34, 'tensorflow.Session', 'tf.Session', ([], {}), True, 'import tensorflow as tf\n'), (41, 'numpy.zeros', 'np.zeros', (['self.ACTIONS'], {}), True, 'import numpy as np\n'), (45, 'cv2.threshold', 'cv2.threshold', (['x_t', '(1)', '(255)', 'cv2.THRESH_BINARY'], {}), False, 'import cv2\n'), (46, 'numpy.stack', 'np.stack', (['(x_t, x_t, x_t, x_t)'], {'axis': '(2)'}), True, 'import numpy as np\n'), (52, 'tensorflow.train.Saver', 'tf.train.Saver', ([], {}), True, 'import tensorflow as tf\n'), (54, 'tensorflow.train.get_checkpoint_state', 'tf.train.get_checkpoint_state', (['"""saved_networks"""'], {}), True, 'import tensorflow as tf\n'), (116, 'tensorflow.placeholder', 'tf.placeholder', (['"""float"""', '[None, 80, 80, 4]'], {}), True, 'import tensorflow as tf\n'), (125, 'tensorflow.reshape', 'tf.reshape', (['h_conv3', '[-1, 1600]', '"""h_conv3_flat"""'], {}), True, 'import tensorflow as tf\n'), (133, 'tensorflow.placeholder', 'tf.placeholder', (['tf.float32', '[None, self.ACTIONS]'], {}), True, 'import tensorflow as tf\n'), (134, 'tensorflow.placeholder', 'tf.placeholder', (['tf.float32', '[None]'], {}), True, 'import tensorflow as tf\n'), (143, 'numpy.zeros', 'np.zeros', (['[self.ACTIONS]'], {}), True, 'import numpy as np\n'), (163, 'cv2.threshold', 'cv2.threshold', (['x_t1', '(1)', '(255)', 'cv2.THRESH_BINARY'], {}), False, 'import cv2\n'), (164, 'numpy.reshape', 'np.reshape', (['x_t1', '(80, 80, 1)'], {}), True, 'import numpy as np\n'), (166, 'numpy.append', 'np.append', (['x_t1', 's_t[:, :, :3]'], {'axis': '(2)'}), True, 'import numpy as np\n'), (202, 'random.sample', 'random.sample', (['self.stored_memory', 'self.BATCH'], {}), False, 'import random\n'), (44, 'cv2.resize', 'cv2.resize', (['x_t', '(80, 80)'], {}), False, 'import cv2\n'), (53, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (66, 'tensorflow.variable_scope', 'tf.variable_scope', (['name'], {}), True, 'import tensorflow as tf\n'), (75, 'tensorflow.variable_scope', 'tf.variable_scope', (['name'], {}), True, 'import tensorflow as tf\n'), (85, 'tensorflow.variable_scope', 'tf.variable_scope', (['name'], {}), True, 'import tensorflow as tf\n'), (86, 'tensorflow.nn.conv2d', 'tf.nn.conv2d', (['x', 'W', '[1, stride, stride, 1]'], {'padding': '"""SAME"""'}), True, 'import tensorflow as tf\n'), (87, 'tensorflow.nn.bias_add', 'tf.nn.bias_add', (['conv', 'bias'], {}), True, 'import tensorflow as tf\n'), (88, 'tensorflow.nn.relu', 'tf.nn.relu', (['pre_activation'], {'name': 'scope.name'}), True, 'import tensorflow as tf\n'), (94, 'tensorflow.variable_scope', 'tf.variable_scope', (['name'], {}), True, 'import tensorflow as tf\n'), (95, 'tensorflow.nn.max_pool', 'tf.nn.max_pool', (['x', '[1, 2, 2, 1]', '[1, 2, 2, 1]'], {'padding': '"""SAME"""'}), True, 'import tensorflow as tf\n'), (128, 'tensorflow.matmul', 'tf.matmul', (['h_fc1', 'W_fc2'], {}), True, 'import tensorflow as tf\n'), (135, 'tensorflow.multiply', 'tf.multiply', (['readout', 'action'], {}), True, 'import tensorflow as tf\n'), (136, 'tensorflow.square', 'tf.square', (['(y - readout_action)'], {}), True, 'import tensorflow as tf\n'), (162, 'cv2.resize', 'cv2.resize', (['x_t1_colored', '(80, 80)'], {}), False, 'import cv2\n'), (126, 'tensorflow.matmul', 'tf.matmul', (['h_conv3_flat', 'W_fc1'], {}), True, 'import tensorflow as tf\n'), (137, 'tensorflow.train.AdamOptimizer', 'tf.train.AdamOptimizer', (['(1e-06)'], {}), True, 'import tensorflow as tf\n'), (146, 'random.random', 'random.random', ([], {}), False, 'import random\n'), (148, 'random.randrange', 'random.randrange', (['self.ACTIONS'], {}), False, 'import random\n'), (151, 'numpy.argmax', 'np.argmax', (['read_out_t'], {}), True, 'import numpy as np\n'), (194, 'numpy.max', 'np.max', (['read_out_t'], {}), True, 'import numpy as np\n'), (70, 'tensorflow.truncated_normal_initializer', 'tf.truncated_normal_initializer', ([], {'stddev': '(0.1)', 'dtype': 'tf.float32'}), True, 'import tensorflow as tf\n'), (79, 'tensorflow.constant_initializer', 'tf.constant_initializer', (['(0.01)'], {}), True, 'import tensorflow as tf\n'), (152, 'random.randrange', 'random.randrange', (['self.ACTIONS'], {}), False, 'import random\n'), (220, 'numpy.max', 'np.max', (['readout_j1_batch[i]'], {}), True, 'import numpy as np\n')] |
RitwickGhosh/retinaface-tf2 | 01ac9b4fe41dc11678034b4c5ffb14c51d52d809 | import tensorflow as tf
def _smooth_l1_loss(y_true, y_pred):
t = tf.abs(y_pred - y_true)
return tf.where(t < 1, 0.5 * t ** 2, t - 0.5)
def MultiBoxLoss(num_class=2, neg_pos_ratio=3):
"""multi-box loss"""
def multi_box_loss(y_true, y_pred):
num_batch = tf.shape(y_true)[0]
num_prior = tf.shape(y_true)[1]
loc_pred = tf.reshape(y_pred[0], [num_batch * num_prior, 4])
landm_pred = tf.reshape(y_pred[1], [num_batch * num_prior, 10])
class_pred = tf.reshape(y_pred[2], [num_batch * num_prior, num_class])
loc_true = tf.reshape(y_true[..., :4], [num_batch * num_prior, 4])
landm_true = tf.reshape(y_true[..., 4:14], [num_batch * num_prior, 10])
landm_valid = tf.reshape(y_true[..., 14], [num_batch * num_prior, 1])
class_true = tf.reshape(y_true[..., 15], [num_batch * num_prior, 1])
# define filter mask: class_true = 1 (pos), 0 (neg), -1 (ignore)
# landm_valid = 1 (w landm), 0 (w/o landm)
mask_pos = tf.equal(class_true, 1)
mask_neg = tf.equal(class_true, 0)
mask_landm = tf.logical_and(tf.equal(landm_valid, 1), mask_pos)
# landm loss (smooth L1)
mask_landm_b = tf.broadcast_to(mask_landm, tf.shape(landm_true))
loss_landm = _smooth_l1_loss(tf.boolean_mask(landm_true, mask_landm_b),
tf.boolean_mask(landm_pred, mask_landm_b))
loss_landm = tf.reduce_mean(loss_landm)
# localization loss (smooth L1)
mask_pos_b = tf.broadcast_to(mask_pos, tf.shape(loc_true))
loss_loc = _smooth_l1_loss(tf.boolean_mask(loc_true, mask_pos_b),
tf.boolean_mask(loc_pred, mask_pos_b))
loss_loc = tf.reduce_mean(loss_loc)
# classification loss (crossentropy)
# 1. compute max conf across batch for hard negative mining
loss_class = tf.where(mask_neg,
1 - class_pred[:, 0][..., tf.newaxis], 0)
# 2. hard negative mining
loss_class = tf.reshape(loss_class, [num_batch, num_prior])
loss_class_idx = tf.argsort(loss_class, axis=1, direction='DESCENDING')
loss_class_idx_rank = tf.argsort(loss_class_idx, axis=1)
mask_pos_per_batch = tf.reshape(mask_pos, [num_batch, num_prior])
num_pos_per_batch = tf.reduce_sum(
tf.cast(mask_pos_per_batch, tf.float32), 1, keepdims=True)
num_pos_per_batch = tf.maximum(num_pos_per_batch, 1)
num_neg_per_batch = tf.minimum(neg_pos_ratio * num_pos_per_batch,
tf.cast(num_prior, tf.float32) - 1)
mask_hard_neg = tf.reshape(
tf.cast(loss_class_idx_rank, tf.float32) < num_neg_per_batch,
[num_batch * num_prior, 1])
# 3. classification loss including positive and negative examples
loss_class_mask = tf.logical_or(mask_pos, mask_hard_neg)
loss_class_mask_b = tf.broadcast_to(loss_class_mask,
tf.shape(class_pred))
filter_class_true = tf.boolean_mask(tf.cast(mask_pos, tf.float32),
loss_class_mask)
filter_class_pred = tf.boolean_mask(class_pred, loss_class_mask_b)
filter_class_pred = tf.reshape(filter_class_pred, [-1, num_class])
loss_class = tf.keras.losses.sparse_categorical_crossentropy(
y_true=filter_class_true, y_pred=filter_class_pred)
loss_class = tf.reduce_mean(loss_class)
return loss_loc, loss_landm, loss_class
return multi_box_loss
| [
"tensorflow.boolean_mask",
"tensorflow.reduce_mean",
"tensorflow.logical_or",
"tensorflow.maximum",
"tensorflow.shape",
"tensorflow.reshape",
"tensorflow.equal",
"tensorflow.keras.losses.sparse_categorical_crossentropy",
"tensorflow.cast",
"tensorflow.argsort",
"tensorflow.where",
"tensorflow.abs"
] | modules/losses.py | [(5, 'tensorflow.abs', 'tf.abs', (['(y_pred - y_true)'], {}), True, 'import tensorflow as tf\n'), (6, 'tensorflow.where', 'tf.where', (['(t < 1)', '(0.5 * t ** 2)', '(t - 0.5)'], {}), True, 'import tensorflow as tf\n'), (15, 'tensorflow.reshape', 'tf.reshape', (['y_pred[0]', '[num_batch * num_prior, 4]'], {}), True, 'import tensorflow as tf\n'), (16, 'tensorflow.reshape', 'tf.reshape', (['y_pred[1]', '[num_batch * num_prior, 10]'], {}), True, 'import tensorflow as tf\n'), (17, 'tensorflow.reshape', 'tf.reshape', (['y_pred[2]', '[num_batch * num_prior, num_class]'], {}), True, 'import tensorflow as tf\n'), (18, 'tensorflow.reshape', 'tf.reshape', (['y_true[(...), :4]', '[num_batch * num_prior, 4]'], {}), True, 'import tensorflow as tf\n'), (19, 'tensorflow.reshape', 'tf.reshape', (['y_true[(...), 4:14]', '[num_batch * num_prior, 10]'], {}), True, 'import tensorflow as tf\n'), (20, 'tensorflow.reshape', 'tf.reshape', (['y_true[..., 14]', '[num_batch * num_prior, 1]'], {}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.reshape', 'tf.reshape', (['y_true[..., 15]', '[num_batch * num_prior, 1]'], {}), True, 'import tensorflow as tf\n'), (25, 'tensorflow.equal', 'tf.equal', (['class_true', '(1)'], {}), True, 'import tensorflow as tf\n'), (26, 'tensorflow.equal', 'tf.equal', (['class_true', '(0)'], {}), True, 'import tensorflow as tf\n'), (33, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['loss_landm'], {}), True, 'import tensorflow as tf\n'), (39, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['loss_loc'], {}), True, 'import tensorflow as tf\n'), (43, 'tensorflow.where', 'tf.where', (['mask_neg', '(1 - class_pred[:, (0)][..., tf.newaxis])', '(0)'], {}), True, 'import tensorflow as tf\n'), (47, 'tensorflow.reshape', 'tf.reshape', (['loss_class', '[num_batch, num_prior]'], {}), True, 'import tensorflow as tf\n'), (48, 'tensorflow.argsort', 'tf.argsort', (['loss_class'], {'axis': '(1)', 'direction': '"""DESCENDING"""'}), True, 'import tensorflow as tf\n'), (49, 'tensorflow.argsort', 'tf.argsort', (['loss_class_idx'], {'axis': '(1)'}), True, 'import tensorflow as tf\n'), (50, 'tensorflow.reshape', 'tf.reshape', (['mask_pos', '[num_batch, num_prior]'], {}), True, 'import tensorflow as tf\n'), (53, 'tensorflow.maximum', 'tf.maximum', (['num_pos_per_batch', '(1)'], {}), True, 'import tensorflow as tf\n'), (61, 'tensorflow.logical_or', 'tf.logical_or', (['mask_pos', 'mask_hard_neg'], {}), True, 'import tensorflow as tf\n'), (66, 'tensorflow.boolean_mask', 'tf.boolean_mask', (['class_pred', 'loss_class_mask_b'], {}), True, 'import tensorflow as tf\n'), (67, 'tensorflow.reshape', 'tf.reshape', (['filter_class_pred', '[-1, num_class]'], {}), True, 'import tensorflow as tf\n'), (68, 'tensorflow.keras.losses.sparse_categorical_crossentropy', 'tf.keras.losses.sparse_categorical_crossentropy', ([], {'y_true': 'filter_class_true', 'y_pred': 'filter_class_pred'}), True, 'import tensorflow as tf\n'), (70, 'tensorflow.reduce_mean', 'tf.reduce_mean', (['loss_class'], {}), True, 'import tensorflow as tf\n'), (12, 'tensorflow.shape', 'tf.shape', (['y_true'], {}), True, 'import tensorflow as tf\n'), (13, 'tensorflow.shape', 'tf.shape', (['y_true'], {}), True, 'import tensorflow as tf\n'), (27, 'tensorflow.equal', 'tf.equal', (['landm_valid', '(1)'], {}), True, 'import tensorflow as tf\n'), (30, 'tensorflow.shape', 'tf.shape', (['landm_true'], {}), True, 'import tensorflow as tf\n'), (31, 'tensorflow.boolean_mask', 'tf.boolean_mask', (['landm_true', 'mask_landm_b'], {}), True, 'import tensorflow as tf\n'), (32, 'tensorflow.boolean_mask', 'tf.boolean_mask', (['landm_pred', 'mask_landm_b'], {}), True, 'import tensorflow as tf\n'), (36, 'tensorflow.shape', 'tf.shape', (['loc_true'], {}), True, 'import tensorflow as tf\n'), (37, 'tensorflow.boolean_mask', 'tf.boolean_mask', (['loc_true', 'mask_pos_b'], {}), True, 'import tensorflow as tf\n'), (38, 'tensorflow.boolean_mask', 'tf.boolean_mask', (['loc_pred', 'mask_pos_b'], {}), True, 'import tensorflow as tf\n'), (52, 'tensorflow.cast', 'tf.cast', (['mask_pos_per_batch', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (63, 'tensorflow.shape', 'tf.shape', (['class_pred'], {}), True, 'import tensorflow as tf\n'), (64, 'tensorflow.cast', 'tf.cast', (['mask_pos', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (55, 'tensorflow.cast', 'tf.cast', (['num_prior', 'tf.float32'], {}), True, 'import tensorflow as tf\n'), (57, 'tensorflow.cast', 'tf.cast', (['loss_class_idx_rank', 'tf.float32'], {}), True, 'import tensorflow as tf\n')] |
krishpop/google-research | 3b5ac2325cb61920624859f7ac2faf2198e9c38d | # coding=utf-8
# Copyright 2019 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Lint as: python3
"""Miscellanious utils for loading TF-Agent objects and env visualization.
Convenience methods to enable lightweight usage of TF-Agents library, env
visualization, and related uses.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import datetime
import os.path as osp
import matplotlib.pyplot as plt
import tensorflow as tf
import gin
import numpy as np
import functools
from gym.wrappers import Monitor
from scipy.signal import butter, lfilter
from tf_agents.utils import common
# def construct_tf_agent(agent_class):
# if agent_class
AGENT_CLASS_BINDINGS = {
'sac-safe': 'safe_sac_agent.SafeSacAgent',
'sac-safe-online': 'safe_sac_agent.SafeSacAgentOnline',
'sac': 'sac_agent.SacAgent',
'sac-ensemble': 'ensemble_sac_agent.EnsembleSacAgent'
}
def butter_bandpass(lowcut=0.1, highcut=5.0, fs=50, order=1):
nyq = 0.5 * fs
low = lowcut / nyq
high = highcut / nyq
b, a = butter(order, [low, high], btype='band')
return b, a
def butter_bandpass_filter(data, lowcut=0.1, highcut=5.0, fs=50, order=1):
b, a = butter_bandpass(lowcut, highcut, fs, order=order)
y = lfilter(b, a, data)
return y[-1]
def load_rb_ckpt(ckpt_dir, replay_buffer, ckpt_step=None):
rb_checkpointer = common.Checkpointer(
ckpt_dir=ckpt_dir, max_to_keep=5, replay_buffer=replay_buffer)
if ckpt_step is None:
rb_checkpointer.initialize_or_restore().assert_existing_objects_matched()
else:
rb_checkpointer._checkpoint.restore( # pylint: disable=protected-access
osp.join(ckpt_dir, 'ckpt-{}'.format(ckpt_step)))
rb_checkpointer._load_status.assert_existing_objects_matched() # pylint: disable=protected-access
return replay_buffer
def load_agent_ckpt(ckpt_dir, tf_agent, global_step=None):
if global_step is None:
global_step = tf.compat.v1.train.get_or_create_global_step()
train_checkpointer = common.Checkpointer(
ckpt_dir=ckpt_dir, agent=tf_agent, global_step=global_step)
train_checkpointer.initialize_or_restore().assert_existing_objects_matched()
return tf_agent, global_step
def cleanup_checkpoints(checkpoint_dir):
checkpoint_state = tf.train.get_checkpoint_state(checkpoint_dir)
if checkpoint_state is None:
return
for checkpoint_path in checkpoint_state.all_model_checkpoint_paths:
tf.compat.v1.train.remove_checkpoint(checkpoint_path)
return
def copy_rb(rb_s, rb_t):
for x1, x2 in zip(rb_s.variables(), rb_t.variables()):
x2.assign(x1)
return rb_t
def load_pi_ckpt(ckpt_dir, agent):
train_checkpointer = common.Checkpointer(
ckpt_dir=ckpt_dir, max_to_keep=1, agent=agent)
train_checkpointer.initialize_or_restore().assert_existing_objects_matched()
return agent.policy
def load_policies(agent, base_path, independent_runs):
pi_loaded = []
for run in independent_runs:
pi_ckpt_path = osp.join(base_path, run, 'train/policies/')
pi_loaded.append(load_pi_ckpt(pi_ckpt_path, agent))
return pi_loaded
def create_default_writer_and_save_dir(root_dir):
"""Creates default directories."""
base_dir = osp.expanduser(root_dir)
if not tf.io.gfile.exists(base_dir):
tf.io.gfile.makedirs(base_dir)
tag = datetime.datetime.now().strftime('%Y-%m-%d-%H-%M-%S')
tb_logdir = osp.join(base_dir, tag, 'tb')
save_dir = osp.join(base_dir, tag, 'train')
tf.io.gfile.makedirs(tb_logdir)
tf.io.gfile.makedirs(save_dir)
writer = tf.contrib.summary.create_file_writer(tb_logdir)
writer.set_as_default()
return writer, save_dir
def record_point_mass_episode(tf_env, tf_policy, savepath=None):
"""Records summaries."""
time_step = tf_env.reset()
policy_state = tf_policy.get_initial_state()
states, actions = [], []
while not time_step.is_last():
action_step = tf_policy.action(time_step, policy_state)
a = action_step.action.numpy()[0]
actions.append(a)
s = time_step.observation['observation'].numpy()[0]
states.append(s)
policy_state = action_step.state
time_step = tf_env.step(action_step.action)
wall_mat = tf_env._env.envs[0].walls.copy() # pylint: disable=protected-access
gx, gy = tf_env._env.envs[0]._goal # pylint: disable=protected-access
wall_mat[gx, gy] = 3
w, h = wall_mat.shape
f, ax = plt.subplots(figsize=(w * .8, h * .8))
ax.matshow(wall_mat)
ax.plot(states, c='r')
ax.set_xticks([])
ax.set_yticks([])
if savepath:
f.savefig(savepath)
f.close()
def process_replay_buffer(replay_buffer, max_ep_len=500, k=1, as_tensor=True):
"""Process replay buffer to infer safety rewards with episode boundaries."""
rb_data = replay_buffer.gather_all()
rew = rb_data.reward
boundary_idx = np.where(rb_data.is_boundary().numpy())[1]
last_idx = 0
k_labels = []
for term_idx in boundary_idx:
# TODO(krshna): remove +1?
fail = 1 - int(term_idx - last_idx >= max_ep_len + 1)
ep_rew = tf.gather(rew, np.arange(last_idx, term_idx), axis=1)
labels = np.zeros(ep_rew.shape_as_list()) # ignore obs dim
labels[:, Ellipsis, -k:] = fail
k_labels.append(labels)
last_idx = term_idx
flat_labels = np.concatenate(k_labels, axis=-1).astype(np.float32)
n_flat_labels = flat_labels.shape[1]
n_rews = rb_data.reward.shape_as_list()[1]
safe_rew_labels = np.pad(
flat_labels, ((0, 0), (0, n_rews - n_flat_labels)), mode='constant')
if as_tensor:
return tf.to_float(safe_rew_labels)
return safe_rew_labels
# Pre-processor layers to remove observation from observation dict returned by
# goal-conditioned point-mass environment.
@gin.configurable
def extract_obs_merge_w_ac_layer():
def f(layer_input):
return tf.keras.layers.concatenate(
[layer_input[0]['observation'], layer_input[1]], axis=1)
return tf.keras.layers.Lambda(f)
# HACK: inputs to concatenate have to be in list (not tuple) format
# see "tensorflow_core/python/keras/layers/merge.py", line 378
@gin.configurable
def merge_obs_w_ac_layer():
def f(layer_input):
return tf.keras.layers.concatenate(list(layer_input), axis=-1)
return tf.keras.layers.Lambda(f)
@gin.configurable
def extract_observation_layer():
return tf.keras.layers.Lambda(lambda obs: obs['observation'])
@gin.configurable
def monitor_freq(freq=100, vid_dir='./videos'):
return functools.partial(Monitor, video_callable=lambda x: (x%freq) == 0,
directory=vid_dir)
| [
"tensorflow.train.get_checkpoint_state",
"numpy.pad",
"tensorflow.contrib.summary.create_file_writer",
"tensorflow.keras.layers.Lambda",
"tensorflow.io.gfile.exists",
"numpy.arange",
"tensorflow.compat.v1.train.remove_checkpoint",
"tensorflow.io.gfile.makedirs",
"matplotlib.pyplot.subplots",
"tensorflow.keras.layers.concatenate",
"tensorflow.compat.v1.train.get_or_create_global_step",
"numpy.concatenate",
"scipy.signal.butter",
"tensorflow.to_float",
"scipy.signal.lfilter"
] | safemrl/utils/misc.py | [(55, 'scipy.signal.butter', 'butter', (['order', '[low, high]'], {'btype': '"""band"""'}), False, 'from scipy.signal import butter, lfilter\n'), (61, 'scipy.signal.lfilter', 'lfilter', (['b', 'a', 'data'], {}), False, 'from scipy.signal import butter, lfilter\n'), (66, 'tf_agents.utils.common.Checkpointer', 'common.Checkpointer', ([], {'ckpt_dir': 'ckpt_dir', 'max_to_keep': '(5)', 'replay_buffer': 'replay_buffer'}), False, 'from tf_agents.utils import common\n'), (80, 'tf_agents.utils.common.Checkpointer', 'common.Checkpointer', ([], {'ckpt_dir': 'ckpt_dir', 'agent': 'tf_agent', 'global_step': 'global_step'}), False, 'from tf_agents.utils import common\n'), (87, 'tensorflow.train.get_checkpoint_state', 'tf.train.get_checkpoint_state', (['checkpoint_dir'], {}), True, 'import tensorflow as tf\n'), (102, 'tf_agents.utils.common.Checkpointer', 'common.Checkpointer', ([], {'ckpt_dir': 'ckpt_dir', 'max_to_keep': '(1)', 'agent': 'agent'}), False, 'from tf_agents.utils import common\n'), (118, 'os.path.expanduser', 'osp.expanduser', (['root_dir'], {}), True, 'import os.path as osp\n'), (122, 'os.path.join', 'osp.join', (['base_dir', 'tag', '"""tb"""'], {}), True, 'import os.path as osp\n'), (123, 'os.path.join', 'osp.join', (['base_dir', 'tag', '"""train"""'], {}), True, 'import os.path as osp\n'), (124, 'tensorflow.io.gfile.makedirs', 'tf.io.gfile.makedirs', (['tb_logdir'], {}), True, 'import tensorflow as tf\n'), (125, 'tensorflow.io.gfile.makedirs', 'tf.io.gfile.makedirs', (['save_dir'], {}), True, 'import tensorflow as tf\n'), (126, 'tensorflow.contrib.summary.create_file_writer', 'tf.contrib.summary.create_file_writer', (['tb_logdir'], {}), True, 'import tensorflow as tf\n'), (149, 'matplotlib.pyplot.subplots', 'plt.subplots', ([], {'figsize': '(w * 0.8, h * 0.8)'}), True, 'import matplotlib.pyplot as plt\n'), (181, 'numpy.pad', 'np.pad', (['flat_labels', '((0, 0), (0, n_rews - n_flat_labels))'], {'mode': '"""constant"""'}), True, 'import numpy as np\n'), (195, 'tensorflow.keras.layers.Lambda', 'tf.keras.layers.Lambda', (['f'], {}), True, 'import tensorflow as tf\n'), (204, 'tensorflow.keras.layers.Lambda', 'tf.keras.layers.Lambda', (['f'], {}), True, 'import tensorflow as tf\n'), (209, 'tensorflow.keras.layers.Lambda', 'tf.keras.layers.Lambda', (["(lambda obs: obs['observation'])"], {}), True, 'import tensorflow as tf\n'), (214, 'functools.partial', 'functools.partial', (['Monitor'], {'video_callable': '(lambda x: x % freq == 0)', 'directory': 'vid_dir'}), False, 'import functools\n'), (79, 'tensorflow.compat.v1.train.get_or_create_global_step', 'tf.compat.v1.train.get_or_create_global_step', ([], {}), True, 'import tensorflow as tf\n'), (91, 'tensorflow.compat.v1.train.remove_checkpoint', 'tf.compat.v1.train.remove_checkpoint', (['checkpoint_path'], {}), True, 'import tensorflow as tf\n'), (111, 'os.path.join', 'osp.join', (['base_path', 'run', '"""train/policies/"""'], {}), True, 'import os.path as osp\n'), (119, 'tensorflow.io.gfile.exists', 'tf.io.gfile.exists', (['base_dir'], {}), True, 'import tensorflow as tf\n'), (120, 'tensorflow.io.gfile.makedirs', 'tf.io.gfile.makedirs', (['base_dir'], {}), True, 'import tensorflow as tf\n'), (184, 'tensorflow.to_float', 'tf.to_float', (['safe_rew_labels'], {}), True, 'import tensorflow as tf\n'), (193, 'tensorflow.keras.layers.concatenate', 'tf.keras.layers.concatenate', (["[layer_input[0]['observation'], layer_input[1]]"], {'axis': '(1)'}), True, 'import tensorflow as tf\n'), (121, 'datetime.datetime.now', 'datetime.datetime.now', ([], {}), False, 'import datetime\n'), (172, 'numpy.arange', 'np.arange', (['last_idx', 'term_idx'], {}), True, 'import numpy as np\n'), (178, 'numpy.concatenate', 'np.concatenate', (['k_labels'], {'axis': '(-1)'}), True, 'import numpy as np\n')] |
DarkTheCross/rl_experiments | 3b448d946e18b8d8e40b45b71f4da2fba4e6eb66 | import argparse
import gym
from gym import wrappers
import os.path as osp
import random
import numpy as np
import tensorflow as tf
import tensorflow.contrib.layers as layers
import dqn
from dqn_utils import *
from atari_wrappers import *
def atari_model(img_in, num_actions, scope, reuse=False):
# as described in https://storage.googleapis.com/deepmind-data/assets/papers/DeepMindNature14236Paper.pdf
with tf.variable_scope(scope, reuse=reuse):
out = img_in
with tf.variable_scope("convnet"):
# original architecture
out = layers.convolution2d(out, num_outputs=32, kernel_size=8, stride=4, activation_fn=tf.nn.relu)
out = layers.convolution2d(out, num_outputs=64, kernel_size=4, stride=2, activation_fn=tf.nn.relu)
out = layers.convolution2d(out, num_outputs=64, kernel_size=3, stride=1, activation_fn=tf.nn.relu)
out = layers.flatten(out)
with tf.variable_scope("action_value"):
out = layers.fully_connected(out, num_outputs=512, activation_fn=tf.nn.relu)
out = layers.fully_connected(out, num_outputs=num_actions, activation_fn=None)
return out
def atari_learn(env,
session,
num_timesteps):
# This is just a rough estimate
num_iterations = float(num_timesteps) / 4.0
lr_multiplier = 1.0
lr_schedule = PiecewiseSchedule([
(0, 1e-4 * lr_multiplier),
(num_iterations / 10, 1e-4 * lr_multiplier),
(num_iterations / 2, 5e-5 * lr_multiplier),
],
outside_value=5e-5 * lr_multiplier)
optimizer = dqn.OptimizerSpec(
constructor=tf.train.AdamOptimizer,
kwargs=dict(epsilon=1e-4),
lr_schedule=lr_schedule
)
def stopping_criterion(env, t):
# notice that here t is the number of steps of the wrapped env,
# which is different from the number of steps in the underlying env
return get_wrapper_by_name(env, "Monitor").get_total_steps() >= num_timesteps*5
exploration_schedule = PiecewiseSchedule(
[
(0, 1.0),
(1e6, 0.1),
(num_iterations / 2, 0.01),
], outside_value=0.01
)
dqn.learn(
env,
q_func=atari_model,
optimizer_spec=optimizer,
session=session,
exploration=exploration_schedule,
stopping_criterion=stopping_criterion,
replay_buffer_size=1000000,
batch_size=32,
gamma=0.99,
learning_starts=50000,
learning_freq=4,
frame_history_len=4,
target_update_freq=10000,
grad_norm_clipping=10
)
env.close()
def get_available_gpus():
from tensorflow.python.client import device_lib
local_device_protos = device_lib.list_local_devices()
return [x.physical_device_desc for x in local_device_protos if x.device_type == 'GPU']
def set_global_seeds(i):
try:
import tensorflow as tf
except ImportError:
pass
else:
tf.set_random_seed(i)
np.random.seed(i)
random.seed(i)
def get_session():
tf.reset_default_graph()
tf_config = tf.ConfigProto(
inter_op_parallelism_threads=1,
intra_op_parallelism_threads=1)
session = tf.Session(config=tf_config)
print("AVAILABLE GPUS: ", get_available_gpus())
return session
def get_env(task, seed):
env_id = task.env_id
env = gym.make(env_id)
set_global_seeds(seed)
env.seed(seed)
expt_dir = '/tmp/hw3_vid_dir2/'
env = wrappers.Monitor(env, osp.join(expt_dir, "gym"), force=True)
env = wrap_deepmind(env)
return env
def main():
# Get Atari games.
benchmark = gym.benchmark_spec('Atari40M')
# Change the index to select a different game.
task = benchmark.tasks[3]
# Run training
seed = 0 # Use a seed of zero (you may want to randomize the seed!)
env = get_env(task, seed)
session = get_session()
atari_learn(env, session, num_timesteps=task.max_timesteps)
if __name__ == "__main__":
main()
| [
"tensorflow.contrib.layers.convolution2d",
"numpy.random.seed",
"tensorflow.python.client.device_lib.list_local_devices",
"tensorflow.set_random_seed",
"tensorflow.ConfigProto",
"tensorflow.contrib.layers.fully_connected",
"tensorflow.reset_default_graph",
"tensorflow.contrib.layers.flatten",
"tensorflow.Session",
"tensorflow.variable_scope"
] | pong/run_dqn_atari.py | [(63, 'dqn.learn', 'dqn.learn', (['env'], {'q_func': 'atari_model', 'optimizer_spec': 'optimizer', 'session': 'session', 'exploration': 'exploration_schedule', 'stopping_criterion': 'stopping_criterion', 'replay_buffer_size': '(1000000)', 'batch_size': '(32)', 'gamma': '(0.99)', 'learning_starts': '(50000)', 'learning_freq': '(4)', 'frame_history_len': '(4)', 'target_update_freq': '(10000)', 'grad_norm_clipping': '(10)'}), False, 'import dqn\n'), (83, 'tensorflow.python.client.device_lib.list_local_devices', 'device_lib.list_local_devices', ([], {}), False, 'from tensorflow.python.client import device_lib\n'), (93, 'numpy.random.seed', 'np.random.seed', (['i'], {}), True, 'import numpy as np\n'), (94, 'random.seed', 'random.seed', (['i'], {}), False, 'import random\n'), (97, 'tensorflow.reset_default_graph', 'tf.reset_default_graph', ([], {}), True, 'import tensorflow as tf\n'), (98, 'tensorflow.ConfigProto', 'tf.ConfigProto', ([], {'inter_op_parallelism_threads': '(1)', 'intra_op_parallelism_threads': '(1)'}), True, 'import tensorflow as tf\n'), (101, 'tensorflow.Session', 'tf.Session', ([], {'config': 'tf_config'}), True, 'import tensorflow as tf\n'), (108, 'gym.make', 'gym.make', (['env_id'], {}), False, 'import gym\n'), (121, 'gym.benchmark_spec', 'gym.benchmark_spec', (['"""Atari40M"""'], {}), False, 'import gym\n'), (17, 'tensorflow.variable_scope', 'tf.variable_scope', (['scope'], {'reuse': 'reuse'}), True, 'import tensorflow as tf\n'), (24, 'tensorflow.contrib.layers.flatten', 'layers.flatten', (['out'], {}), True, 'import tensorflow.contrib.layers as layers\n'), (92, 'tensorflow.set_random_seed', 'tf.set_random_seed', (['i'], {}), True, 'import tensorflow as tf\n'), (114, 'os.path.join', 'osp.join', (['expt_dir', '"""gym"""'], {}), True, 'import os.path as osp\n'), (19, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""convnet"""'], {}), True, 'import tensorflow as tf\n'), (21, 'tensorflow.contrib.layers.convolution2d', 'layers.convolution2d', (['out'], {'num_outputs': '(32)', 'kernel_size': '(8)', 'stride': '(4)', 'activation_fn': 'tf.nn.relu'}), True, 'import tensorflow.contrib.layers as layers\n'), (22, 'tensorflow.contrib.layers.convolution2d', 'layers.convolution2d', (['out'], {'num_outputs': '(64)', 'kernel_size': '(4)', 'stride': '(2)', 'activation_fn': 'tf.nn.relu'}), True, 'import tensorflow.contrib.layers as layers\n'), (23, 'tensorflow.contrib.layers.convolution2d', 'layers.convolution2d', (['out'], {'num_outputs': '(64)', 'kernel_size': '(3)', 'stride': '(1)', 'activation_fn': 'tf.nn.relu'}), True, 'import tensorflow.contrib.layers as layers\n'), (25, 'tensorflow.variable_scope', 'tf.variable_scope', (['"""action_value"""'], {}), True, 'import tensorflow as tf\n'), (26, 'tensorflow.contrib.layers.fully_connected', 'layers.fully_connected', (['out'], {'num_outputs': '(512)', 'activation_fn': 'tf.nn.relu'}), True, 'import tensorflow.contrib.layers as layers\n'), (27, 'tensorflow.contrib.layers.fully_connected', 'layers.fully_connected', (['out'], {'num_outputs': 'num_actions', 'activation_fn': 'None'}), True, 'import tensorflow.contrib.layers as layers\n')] |
TropComplique/single-shot-detector | 3714d411305f1a55bebb7e38ee58dfea70aa328d | import tensorflow as tf
from detector import SSD
from detector.anchor_generator import AnchorGenerator
from detector.box_predictor import RetinaNetBoxPredictor
from detector.feature_extractor import RetinaNetFeatureExtractor
from detector.backbones import mobilenet_v1, shufflenet_v2
from metrics import Evaluator
MOVING_AVERAGE_DECAY = 0.993
def model_fn(features, labels, mode, params):
"""
This is a function for creating a computational tensorflow graph.
The function is in format required by tf.estimator.
"""
is_training = mode == tf.estimator.ModeKeys.TRAIN
# the base network
def backbone(images, is_training):
if params['backbone'] == 'mobilenet':
return mobilenet_v1(
images, is_training,
depth_multiplier=params['depth_multiplier']
)
elif params['backbone'] == 'shufflenet':
return shufflenet_v2(
images, is_training,
depth_multiplier=str(params['depth_multiplier'])
)
# add additional layers to the base network
feature_extractor = RetinaNetFeatureExtractor(is_training, backbone)
# ssd anchor maker
anchor_generator = AnchorGenerator(
strides=[8, 16, 32, 64, 128],
scales=[32, 64, 128, 256, 512],
scale_multipliers=[1.0, 1.4142],
aspect_ratios=[1.0, 2.0, 0.5]
)
num_anchors_per_location = anchor_generator.num_anchors_per_location
# add layers that predict boxes and labels
box_predictor = RetinaNetBoxPredictor(is_training, params['num_classes'], num_anchors_per_location)
# collect everything on one place
ssd = SSD(
features['images'], feature_extractor,
anchor_generator, box_predictor,
params['num_classes']
)
# add nms to the graph
if not is_training:
predictions = ssd.get_predictions(
score_threshold=params['score_threshold'],
iou_threshold=params['iou_threshold'],
max_boxes_per_class=params['max_boxes_per_class']
)
if mode == tf.estimator.ModeKeys.PREDICT:
# because images are resized before
# feeding them to the network
box_scaler = features['box_scaler']
predictions['boxes'] /= box_scaler
export_outputs = tf.estimator.export.PredictOutput({
name: tf.identity(tensor, name)
for name, tensor in predictions.items()
})
return tf.estimator.EstimatorSpec(
mode, predictions=predictions,
export_outputs={'outputs': export_outputs}
)
# add l2 regularization
with tf.name_scope('weight_decay'):
add_weight_decay(params['weight_decay'])
regularization_loss = tf.losses.get_regularization_loss()
# create localization and classification losses
losses = ssd.loss(labels, params)
tf.losses.add_loss(params['localization_loss_weight'] * losses['localization_loss'])
tf.losses.add_loss(params['classification_loss_weight'] * losses['classification_loss'])
tf.summary.scalar('regularization_loss', regularization_loss)
tf.summary.scalar('localization_loss', losses['localization_loss'])
tf.summary.scalar('classification_loss', losses['classification_loss'])
total_loss = tf.losses.get_total_loss(add_regularization_losses=True)
if mode == tf.estimator.ModeKeys.EVAL:
batch_size = features['images'].shape[0].value
assert batch_size == 1
evaluator = Evaluator(num_classes=params['num_classes'])
eval_metric_ops = evaluator.get_metric_ops(labels, predictions)
return tf.estimator.EstimatorSpec(
mode, loss=total_loss,
eval_metric_ops=eval_metric_ops
)
assert mode == tf.estimator.ModeKeys.TRAIN
with tf.variable_scope('learning_rate'):
global_step = tf.train.get_global_step()
learning_rate = tf.train.cosine_decay(
params['initial_learning_rate'],
global_step, decay_steps=params['num_steps']
)
tf.summary.scalar('learning_rate', learning_rate)
update_ops = tf.get_collection(tf.GraphKeys.UPDATE_OPS)
with tf.control_dependencies(update_ops), tf.variable_scope('optimizer'):
optimizer = tf.train.AdamOptimizer(learning_rate)
grads_and_vars = optimizer.compute_gradients(total_loss)
train_op = optimizer.apply_gradients(grads_and_vars, global_step)
for g, v in grads_and_vars:
tf.summary.histogram(v.name[:-2] + '_hist', v)
tf.summary.histogram(v.name[:-2] + '_grad_hist', g)
with tf.control_dependencies([train_op]), tf.name_scope('ema'):
ema = tf.train.ExponentialMovingAverage(decay=MOVING_AVERAGE_DECAY, num_updates=global_step)
train_op = ema.apply(tf.trainable_variables())
return tf.estimator.EstimatorSpec(mode, loss=total_loss, train_op=train_op)
def add_weight_decay(weight_decay):
"""Add L2 regularization to all (or some) trainable kernel weights."""
weight_decay = tf.constant(
weight_decay, tf.float32,
[], 'weight_decay'
)
trainable_vars = tf.trainable_variables()
kernels = [
v for v in trainable_vars
if ('weights' in v.name or 'kernel' in v.name) and 'depthwise_weights' not in v.name
]
for K in kernels:
x = tf.multiply(weight_decay, tf.nn.l2_loss(K))
tf.add_to_collection(tf.GraphKeys.REGULARIZATION_LOSSES, x)
class RestoreMovingAverageHook(tf.train.SessionRunHook):
def __init__(self, model_dir):
super(RestoreMovingAverageHook, self).__init__()
self.model_dir = model_dir
def begin(self):
ema = tf.train.ExponentialMovingAverage(decay=MOVING_AVERAGE_DECAY)
variables_to_restore = ema.variables_to_restore()
self.load_ema = tf.contrib.framework.assign_from_checkpoint_fn(
tf.train.latest_checkpoint(self.model_dir), variables_to_restore
)
def after_create_session(self, sess, coord):
tf.logging.info('Loading EMA weights...')
self.load_ema(sess)
| [
"tensorflow.control_dependencies",
"tensorflow.train.ExponentialMovingAverage",
"tensorflow.nn.l2_loss",
"tensorflow.train.AdamOptimizer",
"tensorflow.summary.scalar",
"tensorflow.losses.get_total_loss",
"tensorflow.train.cosine_decay",
"tensorflow.get_collection",
"tensorflow.train.get_global_step",
"tensorflow.name_scope",
"tensorflow.trainable_variables",
"tensorflow.identity",
"tensorflow.logging.info",
"tensorflow.add_to_collection",
"tensorflow.losses.add_loss",
"tensorflow.summary.histogram",
"tensorflow.constant",
"tensorflow.train.latest_checkpoint",
"tensorflow.losses.get_regularization_loss",
"tensorflow.estimator.EstimatorSpec",
"tensorflow.variable_scope"
] | model.py | [(34, 'detector.feature_extractor.RetinaNetFeatureExtractor', 'RetinaNetFeatureExtractor', (['is_training', 'backbone'], {}), False, 'from detector.feature_extractor import RetinaNetFeatureExtractor\n'), (37, 'detector.anchor_generator.AnchorGenerator', 'AnchorGenerator', ([], {'strides': '[8, 16, 32, 64, 128]', 'scales': '[32, 64, 128, 256, 512]', 'scale_multipliers': '[1.0, 1.4142]', 'aspect_ratios': '[1.0, 2.0, 0.5]'}), False, 'from detector.anchor_generator import AnchorGenerator\n'), (46, 'detector.box_predictor.RetinaNetBoxPredictor', 'RetinaNetBoxPredictor', (['is_training', "params['num_classes']", 'num_anchors_per_location'], {}), False, 'from detector.box_predictor import RetinaNetBoxPredictor\n'), (49, 'detector.SSD', 'SSD', (["features['images']", 'feature_extractor', 'anchor_generator', 'box_predictor', "params['num_classes']"], {}), False, 'from detector import SSD\n'), (86, 'tensorflow.losses.add_loss', 'tf.losses.add_loss', 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|
digimatronics/Deepmind-Pythons-TF | 9b1c649e7a241ba8a70631378146dc92f742deec | # Copyright 2016 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""Batch normalization module for nn.
This contains the module BatchNorm, which performs batch normalization on
its inputs. It has an optional post-normalization scale and offset, and it
maintains moving averages of the statistics for use at test time.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import tensorflow as tf
from tensorflow.contrib.layers.python.layers import utils
from tensorflow.python.training import moving_averages
from nn import base
from nn import util
class BatchNorm(base.AbstractModule):
"""Batch normalization module, including optional affine transformation.
This module maintains exponential moving averages of the mean and
variance, used for calculating more accurate shifted statistics at training
time and optionally used to normalize at test time.
In order to update the moving averages, the user must run the
ops in the tf.GraphKeys.UPDATE_OPS TensorFlow collection. For example:
bn = BatchNorm()
train_net = bn(train_inputs, is_training=True)
test_net = bn(test_inputs, is_training=False, test_local_stats=False)
...
update_ops = tf.get_collection(tf.GraphKeys.UPDATE_OPS)
with tf.control_dependencies(update_ops):
train_op = tf.group(train_op)
Then, whenever `train_op` is run so also are the moving average update ops.
At training time, batch statistics (mean, variance) are not shared between
separate connections. The moving averages are shared between separate
connections. At both training and test time, the optional affine
transformations are shared between separate connections.
Local batch statistics are used by default at test time, but the moving
averages can be used by specifying a flag when connecting. One often wants
to use local batch statistics at test time to track the progress while the
model is trained as it would ensure that moving average updates do not affect
the training curves. Once the training is finished, it's often advantageous
to use moving average statistics, since it would make evaluation agnostic to
the batch size, and might even lead to small improvements over the local
batch statistics.
"""
GAMMA = "gamma"
BETA = "beta"
POSSIBLE_INITIALIZER_KEYS = {GAMMA, BETA}
def __init__(self, reduction_indices=None, offset=True, scale=False,
decay_rate=0.999, eps=1e-3, initializers=None,
use_legacy_moving_second_moment=False,
name="batch_norm"):
"""Constructs a BatchNorm module.
By default reduces over all input tensor dimensions apart from the final
dimension. This has the effect of treating pixels in 1D/2D/3D images as
additional elements of the minibatch.
If this is not the desired behaviour, the user can specify the tensor
indices to reduce over with `reduction_indices`.
Args:
reduction_indices: Optional indices of dimensions to reduce over.
offset: Optional boolean to specify whether or not to apply a trained
component-wise bias after the batch normalization and scaling.
scale: Optional boolean to specify whether or not to apply a trained
component-wise scale after the batch normalization.
decay_rate: Decay rate of the exponential moving averages of the mean
and variance.
eps: Small number to avoid dividing by zero when diving by the standard
deviation.
initializers: Optional dict containing ops to initialize the weights of
the affine transform (`gamma` and `beta`).
use_legacy_moving_second_moment: Keep a moving second moment, rather than
the moving variance. This is deprecated, but is kept for backwards
compatability with old checkpoints. By default `False`.
name: Name of the module.
Raises:
base.Error: If initializers contains any keys other
than `gamma` or `beta`.
ValueError: If `use_legacy_moving_second_moment` is not `True`.
"""
super(BatchNorm, self).__init__(name)
self._reduction_indices = reduction_indices
self._offset = offset
self._scale = scale
self._decay_rate = decay_rate
self._eps = eps
self._use_legacy_moving_second_moment = use_legacy_moving_second_moment
self._initializers = util.check_initializers(
initializers, self.POSSIBLE_INITIALIZER_KEYS)
def _set_default_initializer(self, var_name):
"""Sets up a default initializer for a variable if one doesn't exist.
For the offset (beta), a zeros initializer is used by default.
For the scale (gamma), a ones initializer is used by default.
Args:
var_name: name of variable as a string.
"""
if var_name not in self._initializers:
if var_name == self.GAMMA:
self._initializers[self.GAMMA] = tf.ones_initializer()
elif var_name == self.BETA:
self._initializers[self.BETA] = tf.zeros_initializer
def _build_statistics_variance(self, input_batch,
reduction_indices, use_batch_stats):
"""Builds the statistics part of the graph when using moving variance.
Args:
input_batch: Input batch Tensor.
reduction_indices: Indices of `input_batch` to reduce over.
use_batch_stats: Boolean to indicate if batch statistics should be
calculated, otherwise moving averages are returned.
Returns:
Tuple of (mean, variance).
"""
# Set up our moving statistics. When connecting in parallel, this is shared.
self._moving_mean = tf.get_variable(
"moving_mean",
shape=self._mean_shape,
collections=[tf.GraphKeys.MOVING_AVERAGE_VARIABLES,
tf.GraphKeys.VARIABLES],
initializer=tf.zeros_initializer,
trainable=False)
self._moving_variance = tf.get_variable(
"moving_variance",
shape=self._mean_shape,
collections=[tf.GraphKeys.MOVING_AVERAGE_VARIABLES,
tf.GraphKeys.VARIABLES],
initializer=tf.ones_initializer(),
trainable=False)
def build_batch_stats():
"""Builds the batch statistics calculation ops."""
# We use the moving mean as an estimate of the mean in order to perform
# a more numerically stable calculation of the batch mean.
# Copy for better stability.
shift = tf.add(self._moving_mean, 0)
counts, shifted_sum_x, shifted_sum_x2, _ = tf.nn.sufficient_statistics(
input_batch,
reduction_indices,
keep_dims=True,
shift=shift,
name="batch_norm_ss")
mean, variance = tf.nn.normalize_moments(counts,
shifted_sum_x,
shifted_sum_x2,
shift,
name="normalize_moments")
return mean, variance
def build_moving_stats():
return (
tf.identity(self._moving_mean),
tf.identity(self._moving_variance),
)
mean, variance = utils.smart_cond(
use_batch_stats,
build_batch_stats,
build_moving_stats,
)
return mean, variance
def _build_statistics_second_moment(self, input_batch,
reduction_indices, use_batch_stats):
"""Builds the statistics part of the graph when using moving second moment.
Args:
input_batch: Input batch Tensor.
reduction_indices: Indices of `input_batch` to reduce over.
use_batch_stats: Boolean to indicate if batch statistics should be
calculated, otherwise moving averages are returned.
Returns:
Tuple of (mean, variance, second_moment).
"""
# Set up our moving statistics. When connecting in parallel, this is shared.
self._moving_mean = tf.get_variable(
"moving_mean",
shape=self._mean_shape,
collections=[tf.GraphKeys.MOVING_AVERAGE_VARIABLES,
tf.GraphKeys.VARIABLES],
initializer=tf.zeros_initializer,
trainable=False)
self._moving_second_moment = tf.get_variable(
"moving_second_moment",
shape=self._mean_shape,
collections=[tf.GraphKeys.MOVING_AVERAGE_VARIABLES,
tf.GraphKeys.VARIABLES],
initializer=tf.ones_initializer(),
trainable=False)
self._moving_variance = tf.sub(self._moving_second_moment,
tf.square(self._moving_mean),
name="moving_variance")
def build_batch_stats():
"""Builds the batch statistics calculation ops."""
# Copy for better stability.
# We use the moving mean as an estimate of the mean in order to perform
# a more numerically stable calculation of the batch mean.
shift = tf.add(self._moving_mean, 0)
counts, shifted_sum_x, shifted_sum_x2, _ = tf.nn.sufficient_statistics(
input_batch,
reduction_indices,
keep_dims=True,
shift=shift,
name="batch_norm_ss")
mean, variance = tf.nn.normalize_moments(counts,
shifted_sum_x,
shifted_sum_x2,
shift,
name="normalize_moments")
second_moment = variance + tf.square(mean)
return mean, variance, second_moment
def build_moving_stats():
return (
tf.identity(self._moving_mean),
tf.identity(self._moving_variance),
tf.identity(self._moving_second_moment),
)
mean, variance, second_moment = utils.smart_cond(
use_batch_stats,
build_batch_stats,
build_moving_stats,
)
return mean, variance, second_moment
def _build_update_ops_variance(self, mean, variance, is_training):
"""Builds the moving average update ops when using moving variance.
Args:
mean: The mean value to update with.
variance: The variance value to update with.
is_training: Boolean Tensor to indicate if we're currently in
training mode.
"""
def build_update_ops():
"""Builds the exponential moving average update ops."""
update_mean_op = moving_averages.assign_moving_average(
variable=self._moving_mean,
value=mean,
decay=self._decay_rate,
name="update_moving_mean").op
update_variance_op = moving_averages.assign_moving_average(
variable=self._moving_variance,
value=variance,
decay=self._decay_rate,
name="update_moving_variance").op
return update_mean_op, update_variance_op
def build_no_ops():
return (tf.no_op(), tf.no_op())
# Only make the ops if we know that `is_training=True`, or the value of
# `is_training` is unknown.
is_training_const = utils.constant_value(is_training)
if is_training_const is None or is_training_const:
update_mean_op, update_variance_op = utils.smart_cond(
is_training,
build_update_ops,
build_no_ops,
)
# Every new connection creates a new op which adds its contribution
# to the running average when ran.
tf.add_to_collection(tf.GraphKeys.UPDATE_OPS, update_mean_op)
tf.add_to_collection(tf.GraphKeys.UPDATE_OPS, update_variance_op)
def _build_update_ops_second_moment(self, mean, second_moment, is_training):
"""Builds the moving average update ops when using the moving second moment.
Args:
mean: The mean value to update with.
second_moment: The second_moment value to update with.
is_training: Boolean Tensor to indicate if we're currently in
training mode.
"""
def build_update_ops():
"""Builds the exponential moving average update ops."""
update_mean_op = moving_averages.assign_moving_average(
variable=self._moving_mean,
value=mean,
decay=self._decay_rate,
name="update_moving_mean").op
update_second_moment_op = moving_averages.assign_moving_average(
variable=self._moving_second_moment,
value=second_moment,
decay=self._decay_rate,
name="update_moving_second_moment").op
return update_mean_op, update_second_moment_op
def build_no_ops():
return (tf.no_op(), tf.no_op())
# Only make the ops if we know that `is_training=True`, or the value of
# `is_training` is unknown.
is_training_const = utils.constant_value(is_training)
if is_training_const is None or is_training_const:
update_mean_op, update_second_moment_op = utils.smart_cond(
is_training,
build_update_ops,
build_no_ops,
)
# Every new connection creates a new op which adds its contribution
# to the running average when ran.
tf.add_to_collection(tf.GraphKeys.UPDATE_OPS, update_mean_op)
tf.add_to_collection(tf.GraphKeys.UPDATE_OPS, update_second_moment_op)
def _build(self, input_batch, is_training=True, test_local_stats=True):
"""Connects the BatchNorm module into the graph.
Args:
input_batch: A Tensor of arbitrary dimension. By default, the final
dimension is not reduced over when computing the minibatch statistics.
is_training: A boolean to indicate if the module should be connected in
training mode, meaning the moving averages are updated. By default
`True`. Can be a Tensor.
test_local_stats: A boolean to indicate if local batch statistics should
be used when `is_training=False`. If not, moving averages are used.
By default `True`. Can be a Tensor.
Returns:
A tensor with the same shape as `input_batch`.
Raises:
base.IncompatibleShapeError: If `reduction_indices` is not valid for the
input shape or has negative entries.
base.NotSupportedError: If `input_batch` has data type of `tf.float16`.
"""
input_shape = input_batch.get_shape()
if self._reduction_indices is not None:
if len(self._reduction_indices) > len(input_shape):
raise base.IncompatibleShapeError(
"Too many reduction indices specified.")
if max(self._reduction_indices) >= len(input_shape):
raise base.IncompatibleShapeError(
"Reduction index too large for input shape.")
if min(self._reduction_indices) < 0:
raise base.IncompatibleShapeError(
"Reduction indeces must be non-negative.")
reduction_indices = self._reduction_indices
else:
# Reduce over all dimensions except the last.
reduction_indices = range(len(input_shape))[:-1]
if input_batch.dtype == tf.float16:
raise base.NotSupportedError(
"BatchNorm does not support `tf.float16`, insufficient "
"precision for calculating sufficient statistics.")
self._mean_shape = input_batch.get_shape().as_list()
for index in reduction_indices:
self._mean_shape[index] = 1
use_batch_stats = is_training | test_local_stats
# Use the legacy moving second moment if the flag is set.
if self._use_legacy_moving_second_moment:
tf.logging.warning(
"nn.BatchNorm `use_legacy_second_moment=True` is deprecated.")
mean, variance, second_moment = self._build_statistics_second_moment(
input_batch,
reduction_indices,
use_batch_stats)
self._build_update_ops_second_moment(mean, second_moment, is_training)
else:
mean, variance = self._build_statistics_variance(
input_batch,
reduction_indices,
use_batch_stats)
self._build_update_ops_variance(mean, variance, is_training)
# Set up optional scale and offset factors.
if self._offset:
self._set_default_initializer(self.BETA)
self._beta = tf.get_variable(
self.BETA,
shape=self._mean_shape,
initializer=self._initializers[self.BETA])
else:
self._beta = None
if self._scale:
self._set_default_initializer(self.GAMMA)
self._gamma = tf.get_variable(
self.GAMMA,
shape=self._mean_shape,
initializer=self._initializers[self.GAMMA])
else:
self._gamma = None
out = tf.nn.batch_normalization(
input_batch,
mean,
variance,
self._beta,
self._gamma,
self._eps,
name="batch_norm")
return out
@property
def moving_mean(self):
self._ensure_is_connected()
return self._moving_mean
@property
def moving_second_moment(self):
self._ensure_is_connected()
return self._moving_second_moment
@property
def moving_variance(self):
self._ensure_is_connected()
return self._moving_variance
@property
def beta(self):
self._ensure_is_connected()
if self._beta is None:
raise base.Error(
"Batch normalization doesn't have an offset, so no beta")
else:
return self._beta
@property
def gamma(self):
self._ensure_is_connected()
if self._gamma is None:
raise base.Error(
"Batch normalization doesn't have a scale, so no gamma")
else:
return self._gamma
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"tensorflow.contrib.layers.python.layers.utils.constant_value",
"tensorflow.get_variable",
"tensorflow.nn.batch_normalization",
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"tensorflow.nn.sufficient_statistics",
"tensorflow.add",
"tensorflow.no_op",
"tensorflow.square",
"tensorflow.ones_initializer",
"tensorflow.add_to_collection"
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wangguizhu27/tensorflow1 | 3462966ac7d3884c2153b1655e8528a0f6bac0f4 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ==============================================================================
"""The Poisson distribution class."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from tensorflow.contrib.distributions.python.ops import distribution
from tensorflow.contrib.distributions.python.ops import distribution_util
from tensorflow.python.framework import constant_op
from tensorflow.python.framework import dtypes
from tensorflow.python.framework import ops
from tensorflow.python.framework import tensor_shape
from tensorflow.python.ops import array_ops
from tensorflow.python.ops import check_ops
from tensorflow.python.ops import control_flow_ops
from tensorflow.python.ops import math_ops
__all__ = [
"Poisson",
]
_poisson_sample_note = """
Note that the input value must be a non-negative floating point tensor with
dtype `dtype` and whose shape can be broadcast with `self.rate`. `x` is only
legal if it is non-negative and its components are equal to integer values.
"""
class Poisson(distribution.Distribution):
"""Poisson distribution.
The Poisson distribution is parameterized by an event `rate` parameter.
#### Mathematical Details
The probability mass function (pmf) is,
```none
pmf(k; lambda, k >= 0) = (lambda^k / k!) / Z
Z = exp(lambda).
```
where `rate = lambda` and `Z` is the normalizing constant.
"""
def __init__(self,
rate,
validate_args=False,
allow_nan_stats=True,
name="Poisson"):
"""Initialize a batch of Poisson distributions.
Args:
rate: Floating point tensor, the rate parameter of the
distribution(s). `rate` must be positive.
validate_args: Python `Boolean`, default `False`. When `True` distribution
parameters are checked for validity despite possibly degrading runtime
performance. When `False` invalid inputs may silently render incorrect
outputs.
allow_nan_stats: Python `Boolean`, default `True`. When `True`, statistics
(e.g., mean, mode, variance) use the value "`NaN`" to indicate the
result is undefined. When `False`, an exception is raised if one or
more of the statistic's batch members are undefined.
name: `String` name prefixed to Ops created by this class.
"""
parameters = locals()
with ops.name_scope(name, values=[rate]) as ns:
with ops.control_dependencies([check_ops.assert_positive(rate)] if
validate_args else []):
self._rate = array_ops.identity(rate, name="rate")
super(Poisson, self).__init__(
dtype=self._rate.dtype,
is_continuous=False,
reparameterization_type=distribution.NOT_REPARAMETERIZED,
validate_args=validate_args,
allow_nan_stats=allow_nan_stats,
parameters=parameters,
graph_parents=[self._rate],
name=ns)
@property
def rate(self):
"""Rate parameter."""
return self._rate
def _batch_shape_tensor(self):
return array_ops.shape(self.rate)
def _batch_shape(self):
return self.rate.get_shape()
def _event_shape_tensor(self):
return constant_op.constant([], dtype=dtypes.int32)
def _event_shape(self):
return tensor_shape.scalar()
@distribution_util.AppendDocstring(_poisson_sample_note)
def _log_prob(self, x):
return self._log_unnormalized_prob(x) - self._log_normalization()
@distribution_util.AppendDocstring(_poisson_sample_note)
def _prob(self, x):
return math_ops.exp(self._log_prob(x))
@distribution_util.AppendDocstring(_poisson_sample_note)
def _log_cdf(self, x):
return math_ops.log(self.cdf(x))
@distribution_util.AppendDocstring(_poisson_sample_note)
def _cdf(self, x):
x = self._assert_valid_sample(x, check_integer=False)
return math_ops.igammac(math_ops.floor(x + 1), self.rate)
def _log_normalization(self):
return self.rate
def _log_unnormalized_prob(self, x):
x = self._assert_valid_sample(x, check_integer=True)
return x * math_ops.log(self.rate) - math_ops.lgamma(x + 1)
def _mean(self):
return array_ops.identity(self.rate)
def _variance(self):
return array_ops.identity(self.rate)
@distribution_util.AppendDocstring(
"""Note: when `rate` is an integer, there are actually two modes: `rate`
and `rate - 1`. In this case we return the larger, i.e., `rate`.""")
def _mode(self):
return math_ops.floor(self.rate)
def _assert_valid_sample(self, x, check_integer=True):
if not self.validate_args:
return x
dependencies = [check_ops.assert_non_negative(x)]
if check_integer:
dependencies += [distribution_util.assert_integer_form(
x, message="x has non-integer components.")]
return control_flow_ops.with_dependencies(dependencies, x)
| [
"tensorflow.python.framework.tensor_shape.scalar",
"tensorflow.python.ops.math_ops.log",
"tensorflow.python.ops.array_ops.shape",
"tensorflow.contrib.distributions.python.ops.distribution_util.assert_integer_form",
"tensorflow.python.ops.control_flow_ops.with_dependencies",
"tensorflow.python.ops.check_ops.assert_positive",
"tensorflow.contrib.distributions.python.ops.distribution_util.AppendDocstring",
"tensorflow.python.framework.ops.name_scope",
"tensorflow.python.ops.math_ops.lgamma",
"tensorflow.python.ops.math_ops.floor",
"tensorflow.python.ops.array_ops.identity",
"tensorflow.python.ops.check_ops.assert_non_negative",
"tensorflow.python.framework.constant_op.constant"
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christopher-hsu/ray | abe84b596253411607a91b3a44c135f5e9ac6ac7 | from __future__ import division
import warnings
import keras.backend as K
from keras.models import Model
from keras.layers import Lambda, Input, Layer, Dense
from rl.core import Agent
from rl.policy import EpsGreedyQPolicy, GreedyQPolicy
from rl.util import *
import pdb
def mean_q(y_true, y_pred):
return K.mean(K.max(y_pred, axis=-1))
class AbstractDQNAgent(Agent):
"""Write me
"""
def __init__(self, nb_actions, memory, gamma=.99, batch_size=32, nb_steps_warmup=1000, no_ops = 0,
train_interval=1, memory_interval=1, target_model_update=10000,
delta_range=None, delta_clip=np.inf, custom_model_objects={}, **kwargs):
super(AbstractDQNAgent, self).__init__(**kwargs)
# Soft vs hard target model updates.
if target_model_update < 0:
raise ValueError('`target_model_update` must be >= 0.')
elif target_model_update >= 1:
# Hard update every `target_model_update` steps.
target_model_update = int(target_model_update)
else:
# Soft update with `(1 - target_model_update) * old + target_model_update * new`.
target_model_update = float(target_model_update)
if delta_range is not None:
warnings.warn('`delta_range` is deprecated. Please use `delta_clip` instead, which takes a single scalar. For now we\'re falling back to `delta_range[1] = {}`'.format(delta_range[1]))
delta_clip = delta_range[1]
# Parameters.
self.nb_actions = nb_actions
self.gamma = gamma
self.batch_size = batch_size
self.nb_steps_warmup = nb_steps_warmup
self.no_ops= no_ops
self.train_interval = train_interval
self.memory_interval = memory_interval
self.target_model_update = target_model_update
self.delta_clip = delta_clip
self.custom_model_objects = custom_model_objects
# Related objects.
self.memory = memory
# State.
self.compiled = False
def process_state_batch(self, batch):
batch = np.array(batch)
if self.processor is None:
return batch
return self.processor.process_state_batch(batch)
def compute_batch_q_values(self, state_batch):
batch = self.process_state_batch(state_batch)
q_values = self.model.predict_on_batch(batch)
assert q_values.shape == (len(state_batch), self.nb_actions)
return q_values
def compute_q_values(self, state):
q_values = self.compute_batch_q_values([state]).flatten()
assert q_values.shape == (self.nb_actions,)
return q_values
def get_config(self):
return {
'nb_actions': self.nb_actions,
'gamma': self.gamma,
'batch_size': self.batch_size,
'nb_steps_warmup': self.nb_steps_warmup,
'no_ops': self.no_ops,
'train_interval': self.train_interval,
'memory_interval': self.memory_interval,
'target_model_update': self.target_model_update,
'delta_clip': self.delta_clip,
'memory': get_object_config(self.memory),
}
# An implementation of the DQN agent as described in Mnih (2013) and Mnih (2015).
# http://arxiv.org/pdf/1312.5602.pdf
# http://arxiv.org/abs/1509.06461
class DQNAgent(AbstractDQNAgent):
"""Write me
"""
def __init__(self, model, policy=None, test_policy=None, enable_double_dqn=True, enable_dueling_network=False,
dueling_type='avg', *args, **kwargs):
super(DQNAgent, self).__init__(*args, **kwargs)
# Validate (important) input.
if hasattr(model.output, '__len__') and len(model.output) > 1:
raise ValueError('Model "{}" has more than one output. DQN expects a model that has a single output.'.format(model))
if model.output._keras_shape != (None, self.nb_actions):
raise ValueError('Model output "{}" has invalid shape. DQN expects a model that has one dimension for each action, in this case {}.'.format(model.output, self.nb_actions))
# Parameters.
self.enable_double_dqn = enable_double_dqn
self.enable_dueling_network = enable_dueling_network
self.dueling_type = dueling_type
if self.enable_dueling_network:
# get the second last layer of the model, abandon the last layer
layer = model.layers[-2]
nb_action = model.output._keras_shape[-1]
# layer y has a shape (nb_action+1,)
# y[:,0] represents V(s;theta)
# y[:,1:] represents A(s,a;theta)
y = Dense(nb_action + 1, activation='linear')(layer.output)
# caculate the Q(s,a;theta)
# dueling_type == 'avg'
# Q(s,a;theta) = V(s;theta) + (A(s,a;theta)-Avg_a(A(s,a;theta)))
# dueling_type == 'max'
# Q(s,a;theta) = V(s;theta) + (A(s,a;theta)-max_a(A(s,a;theta)))
# dueling_type == 'naive'
# Q(s,a;theta) = V(s;theta) + A(s,a;theta)
if self.dueling_type == 'avg':
outputlayer = Lambda(lambda a: K.expand_dims(a[:, 0], -1) + a[:, 1:] - K.mean(a[:, 1:], keepdims=True), output_shape=(nb_action,))(y)
elif self.dueling_type == 'max':
outputlayer = Lambda(lambda a: K.expand_dims(a[:, 0], -1) + a[:, 1:] - K.max(a[:, 1:], keepdims=True), output_shape=(nb_action,))(y)
elif self.dueling_type == 'naive':
outputlayer = Lambda(lambda a: K.expand_dims(a[:, 0], -1) + a[:, 1:], output_shape=(nb_action,))(y)
else:
assert False, "dueling_type must be one of {'avg','max','naive'}"
model = Model(inputs=model.input, outputs=outputlayer)
pdb.set_trace()
# Related objects.
self.model = model
if policy is None:
policy = EpsGreedyQPolicy()
if test_policy is None:
test_policy = GreedyQPolicy()
self.policy = policy
self.test_policy = test_policy
# State.
self.reset_states()
def get_config(self):
config = super(DQNAgent, self).get_config()
config['enable_double_dqn'] = self.enable_double_dqn
config['dueling_type'] = self.dueling_type
config['enable_dueling_network'] = self.enable_dueling_network
config['model'] = get_object_config(self.model)
config['policy'] = get_object_config(self.policy)
config['test_policy'] = get_object_config(self.test_policy)
if self.compiled:
config['target_model'] = get_object_config(self.target_model)
return config
def compile(self, optimizer, metrics=[]):
metrics += [mean_q] # register default metrics
# We never train the target model, hence we can set the optimizer and loss arbitrarily.
self.target_model = clone_model(self.model, self.custom_model_objects)
self.target_model.compile(optimizer='sgd', loss='mse')
self.model.compile(optimizer='sgd', loss='mse')
# Compile model.
if self.target_model_update < 1.:
# We use the `AdditionalUpdatesOptimizer` to efficiently soft-update the target model.
updates = get_soft_target_model_updates(self.target_model, self.model, self.target_model_update)
optimizer = AdditionalUpdatesOptimizer(optimizer, updates)
def clipped_masked_error(args):
y_true, y_pred, mask = args
loss = huber_loss(y_true, y_pred, self.delta_clip)
loss *= mask # apply element-wise mask
return K.sum(loss, axis=-1)
# Create trainable model. The problem is that we need to mask the output since we only
# ever want to update the Q values for a certain action. The way we achieve this is by
# using a custom Lambda layer that computes the loss. This gives us the necessary flexibility
# to mask out certain parameters by passing in multiple inputs to the Lambda layer.
y_pred = self.model.output
y_true = Input(name='y_true', shape=(self.nb_actions,))
mask = Input(name='mask', shape=(self.nb_actions,))
loss_out = Lambda(clipped_masked_error, output_shape=(1,), name='loss')([y_pred, y_true, mask])
ins = [self.model.input] if type(self.model.input) is not list else self.model.input
trainable_model = Model(inputs=ins + [y_true, mask], outputs=[loss_out, y_pred])
assert len(trainable_model.output_names) == 2
combined_metrics = {trainable_model.output_names[1]: metrics}
losses = [
lambda y_true, y_pred: y_pred, # loss is computed in Lambda layer
lambda y_true, y_pred: K.zeros_like(y_pred), # we only include this for the metrics
]
trainable_model.compile(optimizer=optimizer, loss=losses, metrics=combined_metrics)
self.trainable_model = trainable_model
self.compiled = True
def load_weights(self, filepath):
self.model.load_weights(filepath)
self.update_target_model_hard()
def save_weights(self, filepath, overwrite=False):
self.model.save_weights(filepath, overwrite=overwrite)
def reset_states(self):
self.recent_action = None
self.recent_observation = None
if self.compiled:
self.model.reset_states()
self.target_model.reset_states()
def update_target_model_hard(self):
self.target_model.set_weights(self.model.get_weights())
def forward(self, observation):
# Select an action.
state = self.memory.get_recent_state(observation)
q_values = self.compute_q_values(state)
if self.training:
action = self.policy.select_action(q_values=q_values)
else:
action = self.test_policy.select_action(q_values=q_values)
# Book-keeping.
self.recent_observation = observation
self.recent_action = action
return action
def backward(self, reward, terminal):
# Store most recent experience in memory.
if self.step % self.memory_interval == 0:
self.memory.append(self.recent_observation, self.recent_action, reward, terminal,
training=self.training)
metrics = [np.nan for _ in self.metrics_names]
if not self.training:
# We're done here. No need to update the experience memory since we only use the working
# memory to obtain the state over the most recent observations.
return metrics
# Train the network on a single stochastic batch.
if self.step > self.nb_steps_warmup and self.step % self.train_interval == 0:
experiences = self.memory.sample(self.batch_size)
assert len(experiences) == self.batch_size
# Start by extracting the necessary parameters (we use a vectorized implementation).
state0_batch = []
reward_batch = []
action_batch = []
terminal1_batch = []
state1_batch = []
for e in experiences:
state0_batch.append(e.state0)
state1_batch.append(e.state1)
reward_batch.append(e.reward)
action_batch.append(e.action)
terminal1_batch.append(0. if e.terminal1 else 1.)
# Prepare and validate parameters.
state0_batch = self.process_state_batch(state0_batch)
state1_batch = self.process_state_batch(state1_batch)
terminal1_batch = np.array(terminal1_batch)
reward_batch = np.array(reward_batch)
assert reward_batch.shape == (self.batch_size,)
assert terminal1_batch.shape == reward_batch.shape
assert len(action_batch) == len(reward_batch)
# Compute Q values for mini-batch update.
if self.enable_double_dqn:
# According to the paper "Deep Reinforcement Learning with Double Q-learning"
# (van Hasselt et al., 2015), in Double DQN, the online network predicts the actions
# while the target network is used to estimate the Q value.
q_values = self.model.predict_on_batch(state1_batch)
assert q_values.shape == (self.batch_size, self.nb_actions)
actions = np.argmax(q_values, axis=1)
assert actions.shape == (self.batch_size,)
# Now, estimate Q values using the target network but select the values with the
# highest Q value wrt to the online model (as computed above).
target_q_values = self.target_model.predict_on_batch(state1_batch)
assert target_q_values.shape == (self.batch_size, self.nb_actions)
q_batch = target_q_values[range(self.batch_size), actions]
else:
# Compute the q_values given state1, and extract the maximum for each sample in the batch.
# We perform this prediction on the target_model instead of the model for reasons
# outlined in Mnih (2015). In short: it makes the algorithm more stable.
target_q_values = self.target_model.predict_on_batch(state1_batch)
assert target_q_values.shape == (self.batch_size, self.nb_actions)
q_batch = np.max(target_q_values, axis=1).flatten()
assert q_batch.shape == (self.batch_size,)
targets = np.zeros((self.batch_size, self.nb_actions))
dummy_targets = np.zeros((self.batch_size,))
masks = np.zeros((self.batch_size, self.nb_actions))
# Compute r_t + gamma * max_a Q(s_t+1, a) and update the target targets accordingly,
# but only for the affected output units (as given by action_batch).
discounted_reward_batch = self.gamma * q_batch
# Set discounted reward to zero for all states that were terminal.
discounted_reward_batch *= terminal1_batch
assert discounted_reward_batch.shape == reward_batch.shape
Rs = reward_batch + discounted_reward_batch
for idx, (target, mask, R, action) in enumerate(zip(targets, masks, Rs, action_batch)):
target[action] = R # update action with estimated accumulated reward
dummy_targets[idx] = R
mask[action] = 1. # enable loss for this specific action
targets = np.array(targets).astype('float32')
masks = np.array(masks).astype('float32')
# Finally, perform a single update on the entire batch. We use a dummy target since
# the actual loss is computed in a Lambda layer that needs more complex input. However,
# it is still useful to know the actual target to compute metrics properly.
ins = [state0_batch] if type(self.model.input) is not list else state0_batch
metrics = self.trainable_model.train_on_batch(ins + [targets, masks], [dummy_targets, targets])
metrics = [metric for idx, metric in enumerate(metrics) if idx not in (1, 2)] # throw away individual losses
metrics += self.policy.metrics
if self.processor is not None:
metrics += self.processor.metrics
if self.target_model_update >= 1 and self.step % self.target_model_update == 0:
self.update_target_model_hard()
return metrics
@property
def layers(self):
return self.model.layers[:]
@property
def metrics_names(self):
# Throw away individual losses and replace output name since this is hidden from the user.
assert len(self.trainable_model.output_names) == 2
dummy_output_name = self.trainable_model.output_names[1]
model_metrics = [name for idx, name in enumerate(self.trainable_model.metrics_names) if idx not in (1, 2)]
model_metrics = [name.replace(dummy_output_name + '_', '') for name in model_metrics]
names = model_metrics + self.policy.metrics_names[:]
if self.processor is not None:
names += self.processor.metrics_names[:]
return names
@property
def policy(self):
return self.__policy
@policy.setter
def policy(self, policy):
self.__policy = policy
self.__policy._set_agent(self)
@property
def test_policy(self):
return self.__test_policy
@test_policy.setter
def test_policy(self, policy):
self.__test_policy = policy
self.__test_policy._set_agent(self)
class NAFLayer(Layer):
"""Write me
"""
def __init__(self, nb_actions, mode='full', **kwargs):
if mode not in ('full', 'diag'):
raise RuntimeError('Unknown mode "{}" in NAFLayer.'.format(self.mode))
self.nb_actions = nb_actions
self.mode = mode
super(NAFLayer, self).__init__(**kwargs)
def call(self, x, mask=None):
# TODO: validate input shape
assert (len(x) == 3)
L_flat = x[0]
mu = x[1]
a = x[2]
if self.mode == 'full':
# Create L and L^T matrix, which we use to construct the positive-definite matrix P.
L = None
LT = None
if K.backend() == 'theano':
import theano.tensor as T
import theano
def fn(x, L_acc, LT_acc):
x_ = K.zeros((self.nb_actions, self.nb_actions))
x_ = T.set_subtensor(x_[np.tril_indices(self.nb_actions)], x)
diag = K.exp(T.diag(x_)) + K.epsilon()
x_ = T.set_subtensor(x_[np.diag_indices(self.nb_actions)], diag)
return x_, x_.T
outputs_info = [
K.zeros((self.nb_actions, self.nb_actions)),
K.zeros((self.nb_actions, self.nb_actions)),
]
results, _ = theano.scan(fn=fn, sequences=L_flat, outputs_info=outputs_info)
L, LT = results
elif K.backend() == 'tensorflow':
import tensorflow as tf
# Number of elements in a triangular matrix.
nb_elems = (self.nb_actions * self.nb_actions + self.nb_actions) // 2
# Create mask for the diagonal elements in L_flat. This is used to exponentiate
# only the diagonal elements, which is done before gathering.
diag_indeces = [0]
for row in range(1, self.nb_actions):
diag_indeces.append(diag_indeces[-1] + (row + 1))
diag_mask = np.zeros(1 + nb_elems) # +1 for the leading zero
diag_mask[np.array(diag_indeces) + 1] = 1
diag_mask = K.variable(diag_mask)
# Add leading zero element to each element in the L_flat. We use this zero
# element when gathering L_flat into a lower triangular matrix L.
nb_rows = tf.shape(L_flat)[0]
zeros = tf.expand_dims(tf.tile(K.zeros((1,)), [nb_rows]), 1)
try:
# Old TF behavior.
L_flat = tf.concat(1, [zeros, L_flat])
except TypeError:
# New TF behavior
L_flat = tf.concat([zeros, L_flat], 1)
# Create mask that can be used to gather elements from L_flat and put them
# into a lower triangular matrix.
tril_mask = np.zeros((self.nb_actions, self.nb_actions), dtype='int32')
tril_mask[np.tril_indices(self.nb_actions)] = range(1, nb_elems + 1)
# Finally, process each element of the batch.
init = [
K.zeros((self.nb_actions, self.nb_actions)),
K.zeros((self.nb_actions, self.nb_actions)),
]
def fn(a, x):
# Exponentiate everything. This is much easier than only exponentiating
# the diagonal elements, and, usually, the action space is relatively low.
x_ = K.exp(x) + K.epsilon()
# Only keep the diagonal elements.
x_ *= diag_mask
# Add the original, non-diagonal elements.
x_ += x * (1. - diag_mask)
# Finally, gather everything into a lower triangular matrix.
L_ = tf.gather(x_, tril_mask)
return [L_, tf.transpose(L_)]
tmp = tf.scan(fn, L_flat, initializer=init)
if isinstance(tmp, (list, tuple)):
# TensorFlow 0.10 now returns a tuple of tensors.
L, LT = tmp
else:
# Old TensorFlow < 0.10 returns a shared tensor.
L = tmp[:, 0, :, :]
LT = tmp[:, 1, :, :]
else:
raise RuntimeError('Unknown Keras backend "{}".'.format(K.backend()))
assert L is not None
assert LT is not None
P = K.batch_dot(L, LT)
elif self.mode == 'diag':
if K.backend() == 'theano':
import theano.tensor as T
import theano
def fn(x, P_acc):
x_ = K.zeros((self.nb_actions, self.nb_actions))
x_ = T.set_subtensor(x_[np.diag_indices(self.nb_actions)], x)
return x_
outputs_info = [
K.zeros((self.nb_actions, self.nb_actions)),
]
P, _ = theano.scan(fn=fn, sequences=L_flat, outputs_info=outputs_info)
elif K.backend() == 'tensorflow':
import tensorflow as tf
# Create mask that can be used to gather elements from L_flat and put them
# into a diagonal matrix.
diag_mask = np.zeros((self.nb_actions, self.nb_actions), dtype='int32')
diag_mask[np.diag_indices(self.nb_actions)] = range(1, self.nb_actions + 1)
# Add leading zero element to each element in the L_flat. We use this zero
# element when gathering L_flat into a lower triangular matrix L.
nb_rows = tf.shape(L_flat)[0]
zeros = tf.expand_dims(tf.tile(K.zeros((1,)), [nb_rows]), 1)
try:
# Old TF behavior.
L_flat = tf.concat(1, [zeros, L_flat])
except TypeError:
# New TF behavior
L_flat = tf.concat([zeros, L_flat], 1)
# Finally, process each element of the batch.
def fn(a, x):
x_ = tf.gather(x, diag_mask)
return x_
P = tf.scan(fn, L_flat, initializer=K.zeros((self.nb_actions, self.nb_actions)))
else:
raise RuntimeError('Unknown Keras backend "{}".'.format(K.backend()))
assert P is not None
assert K.ndim(P) == 3
# Combine a, mu and P into a scalar (over the batches). What we compute here is
# -.5 * (a - mu)^T * P * (a - mu), where * denotes the dot-product. Unfortunately
# TensorFlow handles vector * P slightly suboptimal, hence we convert the vectors to
# 1xd/dx1 matrices and finally flatten the resulting 1x1 matrix into a scalar. All
# operations happen over the batch size, which is dimension 0.
prod = K.batch_dot(K.expand_dims(a - mu, 1), P)
prod = K.batch_dot(prod, K.expand_dims(a - mu, -1))
A = -.5 * K.batch_flatten(prod)
assert K.ndim(A) == 2
return A
def get_output_shape_for(self, input_shape):
return self.compute_output_shape(input_shape)
def compute_output_shape(self, input_shape):
if len(input_shape) != 3:
raise RuntimeError("Expects 3 inputs: L, mu, a")
for i, shape in enumerate(input_shape):
if len(shape) != 2:
raise RuntimeError("Input {} has {} dimensions but should have 2".format(i, len(shape)))
assert self.mode in ('full','diag')
if self.mode == 'full':
expected_elements = (self.nb_actions * self.nb_actions + self.nb_actions) // 2
elif self.mode == 'diag':
expected_elements = self.nb_actions
else:
expected_elements = None
assert expected_elements is not None
if input_shape[0][1] != expected_elements:
raise RuntimeError("Input 0 (L) should have {} elements but has {}".format(input_shape[0][1]))
if input_shape[1][1] != self.nb_actions:
raise RuntimeError(
"Input 1 (mu) should have {} elements but has {}".format(self.nb_actions, input_shape[1][1]))
if input_shape[2][1] != self.nb_actions:
raise RuntimeError(
"Input 2 (action) should have {} elements but has {}".format(self.nb_actions, input_shape[1][1]))
return input_shape[0][0], 1
class NAFAgent(AbstractDQNAgent):
"""Write me
"""
def __init__(self, V_model, L_model, mu_model, random_process=None,
covariance_mode='full', *args, **kwargs):
super(NAFAgent, self).__init__(*args, **kwargs)
# TODO: Validate (important) input.
# Parameters.
self.random_process = random_process
self.covariance_mode = covariance_mode
# Related objects.
self.V_model = V_model
self.L_model = L_model
self.mu_model = mu_model
# State.
self.reset_states()
def update_target_model_hard(self):
self.target_V_model.set_weights(self.V_model.get_weights())
def load_weights(self, filepath):
self.combined_model.load_weights(filepath) # updates V, L and mu model since the weights are shared
self.update_target_model_hard()
def save_weights(self, filepath, overwrite=False):
self.combined_model.save_weights(filepath, overwrite=overwrite)
def reset_states(self):
if self.random_process is not None:
self.random_process.reset_states()
self.recent_action = None
self.recent_observation = None
if self.compiled:
self.combined_model.reset_states()
self.target_V_model.reset_states()
def compile(self, optimizer, metrics=[]):
metrics += [mean_q] # register default metrics
# Create target V model. We don't need targets for mu or L.
self.target_V_model = clone_model(self.V_model, self.custom_model_objects)
self.target_V_model.compile(optimizer='sgd', loss='mse')
# Build combined model.
a_in = Input(shape=(self.nb_actions,), name='action_input')
if type(self.V_model.input) is list:
observation_shapes = [i._keras_shape[1:] for i in self.V_model.input]
else:
observation_shapes = [self.V_model.input._keras_shape[1:]]
os_in = [Input(shape=shape, name='observation_input_{}'.format(idx)) for idx, shape in enumerate(observation_shapes)]
L_out = self.L_model([a_in] + os_in)
V_out = self.V_model(os_in)
mu_out = self.mu_model(os_in)
A_out = NAFLayer(self.nb_actions, mode=self.covariance_mode)([L_out, mu_out, a_in])
combined_out = Lambda(lambda x: x[0]+x[1], output_shape=lambda x: x[0])([A_out, V_out])
combined = Model(inputs=[a_in] + os_in, outputs=[combined_out])
# Compile combined model.
if self.target_model_update < 1.:
# We use the `AdditionalUpdatesOptimizer` to efficiently soft-update the target model.
updates = get_soft_target_model_updates(self.target_V_model, self.V_model, self.target_model_update)
optimizer = AdditionalUpdatesOptimizer(optimizer, updates)
def clipped_error(y_true, y_pred):
return K.mean(huber_loss(y_true, y_pred, self.delta_clip), axis=-1)
combined.compile(loss=clipped_error, optimizer=optimizer, metrics=metrics)
self.combined_model = combined
self.compiled = True
def select_action(self, state):
batch = self.process_state_batch([state])
action = self.mu_model.predict_on_batch(batch).flatten()
assert action.shape == (self.nb_actions,)
# Apply noise, if a random process is set.
if self.training and self.random_process is not None:
noise = self.random_process.sample()
assert noise.shape == action.shape
action += noise
return action
def forward(self, observation):
# Select an action.
state = self.memory.get_recent_state(observation)
action = self.select_action(state)
if self.processor is not None:
action = self.processor.process_action(action)
# Book-keeping.
self.recent_observation = observation
self.recent_action = action
return action
def backward(self, reward, terminal):
# Store most recent experience in memory.
if self.step % self.memory_interval == 0:
self.memory.append(self.recent_observation, self.recent_action, reward, terminal,
training=self.training)
metrics = [np.nan for _ in self.metrics_names]
if not self.training:
# We're done here. No need to update the experience memory since we only use the working
# memory to obtain the state over the most recent observations.
return metrics
# Train the network on a single stochastic batch.
if self.step > self.nb_steps_warmup and self.step % self.train_interval == 0:
experiences = self.memory.sample(self.batch_size)
assert len(experiences) == self.batch_size
# Start by extracting the necessary parameters (we use a vectorized implementation).
state0_batch = []
reward_batch = []
action_batch = []
terminal1_batch = []
state1_batch = []
for e in experiences:
state0_batch.append(e.state0)
state1_batch.append(e.state1)
reward_batch.append(e.reward)
action_batch.append(e.action)
terminal1_batch.append(0. if e.terminal1 else 1.)
# Prepare and validate parameters.
state0_batch = self.process_state_batch(state0_batch)
state1_batch = self.process_state_batch(state1_batch)
terminal1_batch = np.array(terminal1_batch)
reward_batch = np.array(reward_batch)
action_batch = np.array(action_batch)
assert reward_batch.shape == (self.batch_size,)
assert terminal1_batch.shape == reward_batch.shape
assert action_batch.shape == (self.batch_size, self.nb_actions)
# Compute Q values for mini-batch update.
q_batch = self.target_V_model.predict_on_batch(state1_batch).flatten()
assert q_batch.shape == (self.batch_size,)
# Compute discounted reward.
discounted_reward_batch = self.gamma * q_batch
# Set discounted reward to zero for all states that were terminal.
discounted_reward_batch *= terminal1_batch
assert discounted_reward_batch.shape == reward_batch.shape
Rs = reward_batch + discounted_reward_batch
assert Rs.shape == (self.batch_size,)
# Finally, perform a single update on the entire batch.
if len(self.combined_model.input) == 2:
metrics = self.combined_model.train_on_batch([action_batch, state0_batch], Rs)
else:
metrics = self.combined_model.train_on_batch([action_batch] + state0_batch, Rs)
if self.processor is not None:
metrics += self.processor.metrics
if self.target_model_update >= 1 and self.step % self.target_model_update == 0:
self.update_target_model_hard()
return metrics
@property
def layers(self):
return self.combined_model.layers[:]
def get_config(self):
config = super(NAFAgent, self).get_config()
config['V_model'] = get_object_config(self.V_model)
config['mu_model'] = get_object_config(self.mu_model)
config['L_model'] = get_object_config(self.L_model)
if self.compiled:
config['target_V_model'] = get_object_config(self.target_V_model)
return config
@property
def metrics_names(self):
names = self.combined_model.metrics_names[:]
if self.processor is not None:
names += self.processor.metrics_names[:]
return names
# Aliases
ContinuousDQNAgent = NAFAgent
| [
"tensorflow.transpose",
"tensorflow.concat",
"tensorflow.scan",
"tensorflow.shape",
"tensorflow.gather"
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boldjoel/tensorlayer | bb52f4fc40ec88b55fcfcea38a3d4f36a5573541 | # -*- coding: utf-8 -*-
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.util.deprecation import deprecated
from .. import _logging as logging
from .. import files, iterate, utils, visualize
from ..deprecation import deprecated_alias
__all__ = [
'LayersConfig',
'TF_GRAPHKEYS_VARIABLES',
'flatten_reshape',
'clear_layers_name',
'set_name_reuse',
'initialize_rnn_state',
'print_all_variables',
'get_variables_with_name',
'get_layers_with_name',
'list_remove_repeat',
'merge_networks',
'initialize_global_variables',
'Layer',
'InputLayer',
'OneHotInputLayer',
'Word2vecEmbeddingInputlayer',
'EmbeddingInputlayer',
'AverageEmbeddingInputlayer',
'DenseLayer',
'ReconLayer',
'DropoutLayer',
'GaussianNoiseLayer',
'DropconnectDenseLayer',
]
class LayersConfig:
tf_dtype = tf.float32 # TensorFlow DType
set_keep = {} # A dictionary for holding tf.placeholders
try: # For TF12 and later
TF_GRAPHKEYS_VARIABLES = tf.GraphKeys.GLOBAL_VARIABLES
except Exception: # For TF11 and before
TF_GRAPHKEYS_VARIABLES = tf.GraphKeys.VARIABLES
def flatten_reshape(variable, name='flatten'):
"""Reshapes a high-dimension vector input.
[batch_size, mask_row, mask_col, n_mask] ---> [batch_size, mask_row x mask_col x n_mask]
Parameters
----------
variable : TensorFlow variable or tensor
The variable or tensor to be flatten.
name : str
A unique layer name.
Returns
-------
Tensor
Flatten Tensor
Examples
--------
>>> W_conv2 = weight_variable([5, 5, 100, 32]) # 64 features for each 5x5 patch
>>> b_conv2 = bias_variable([32])
>>> W_fc1 = weight_variable([7 * 7 * 32, 256])
>>> h_conv2 = tf.nn.relu(conv2d(h_pool1, W_conv2) + b_conv2)
>>> h_pool2 = max_pool_2x2(h_conv2)
>>> h_pool2.get_shape()[:].as_list() = [batch_size, 7, 7, 32]
... [batch_size, mask_row, mask_col, n_mask]
>>> h_pool2_flat = tl.layers.flatten_reshape(h_pool2)
... [batch_size, mask_row * mask_col * n_mask]
>>> h_pool2_flat_drop = tf.nn.dropout(h_pool2_flat, keep_prob)
...
"""
dim = 1
for d in variable.get_shape()[1:].as_list():
dim *= d
return tf.reshape(variable, shape=[-1, dim], name=name)
@deprecated("2018-06-30", "TensorLayer relies on TensorFlow to check naming.")
def clear_layers_name():
logging.warning('this method is DEPRECATED and has no effect, please remove it from your code.')
@deprecated("2018-06-30", "TensorLayer relies on TensorFlow to check name reusing.")
def set_name_reuse(enable=True):
logging.warning('this method is DEPRECATED and has no effect, please remove it from your code.')
def initialize_rnn_state(state, feed_dict=None):
"""Returns the initialized RNN state.
The inputs are `LSTMStateTuple` or `State` of `RNNCells`, and an optional `feed_dict`.
Parameters
----------
state : RNN state.
The TensorFlow's RNN state.
feed_dict : dictionary
Initial RNN state; if None, returns zero state.
Returns
-------
RNN state
The TensorFlow's RNN state.
"""
try: # TF1.0
LSTMStateTuple = tf.contrib.rnn.LSTMStateTuple
except Exception:
LSTMStateTuple = tf.nn.rnn_cell.LSTMStateTuple
if isinstance(state, LSTMStateTuple):
c = state.c.eval(feed_dict=feed_dict)
h = state.h.eval(feed_dict=feed_dict)
return (c, h)
else:
new_state = state.eval(feed_dict=feed_dict)
return new_state
def print_all_variables(train_only=False):
"""Print information of trainable or all variables,
without ``tl.layers.initialize_global_variables(sess)``.
Parameters
----------
train_only : boolean
Whether print trainable variables only.
- If True, print the trainable variables.
- If False, print all variables.
"""
# tvar = tf.trainable_variables() if train_only else tf.all_variables()
if train_only:
t_vars = tf.trainable_variables()
logging.info(" [*] printing trainable variables")
else:
try: # TF1.0+
t_vars = tf.global_variables()
except Exception: # TF0.12
t_vars = tf.all_variables()
logging.info(" [*] printing global variables")
for idx, v in enumerate(t_vars):
logging.info(" var {:3}: {:15} {}".format(idx, str(v.get_shape()), v.name))
def get_variables_with_name(name=None, train_only=True, printable=False):
"""Get a list of TensorFlow variables by a given name scope.
Parameters
----------
name : str
Get the variables that contain this name.
train_only : boolean
If Ture, only get the trainable variables.
printable : boolean
If True, print the information of all variables.
Returns
-------
list of Tensor
A list of TensorFlow variables
Examples
--------
>>> dense_vars = tl.layers.get_variable_with_name('dense', True, True)
"""
if name is None:
raise Exception("please input a name")
logging.info(" [*] geting variables with %s" % name)
# tvar = tf.trainable_variables() if train_only else tf.all_variables()
if train_only:
t_vars = tf.trainable_variables()
else:
try: # TF1.0+
t_vars = tf.global_variables()
except Exception: # TF0.12
t_vars = tf.all_variables()
d_vars = [var for var in t_vars if name in var.name]
if printable:
for idx, v in enumerate(d_vars):
logging.info(" got {:3}: {:15} {}".format(idx, v.name, str(v.get_shape())))
return d_vars
def get_layers_with_name(net, name="", printable=False):
"""Get a list of layers' output in a network by a given name scope.
Parameters
-----------
net : :class:`Layer`
The last layer of the network.
name : str
Get the layers' output that contain this name.
printable : boolean
If True, print information of all the layers' output
Returns
--------
list of Tensor
A list of layers' output (TensorFlow tensor)
Examples
---------
>>> layers = tl.layers.get_layers_with_name(net, "CNN", True)
"""
logging.info(" [*] geting layers with %s" % name)
layers = []
i = 0
for layer in net.all_layers:
# logging.info(type(layer.name))
if name in layer.name:
layers.append(layer)
if printable:
logging.info(" got {:3}: {:15} {}".format(i, layer.name, str(layer.get_shape())))
i = i + 1
return layers
def list_remove_repeat(x):
"""Remove the repeated items in a list, and return the processed list.
You may need it to create merged layer like Concat, Elementwise and etc.
Parameters
----------
x : list
Input
Returns
-------
list
A list that after removing it's repeated items
Examples
-------
>>> l = [2, 3, 4, 2, 3]
>>> l = list_remove_repeat(l)
... [2, 3, 4]
"""
y = []
for i in x:
if not i in y:
y.append(i)
return y
def merge_networks(layers=None):
"""Merge all parameters, layers and dropout probabilities to a :class:`Layer`.
The output of return network is the first network in the list.
Parameters
----------
layers : list of :class:`Layer`
Merge all parameters, layers and dropout probabilities to the first layer in the list.
Returns
--------
:class:`Layer`
The network after merging all parameters, layers and dropout probabilities to the first network in the list.
Examples
---------
>>> n1 = ...
>>> n2 = ...
>>> n1 = tl.layers.merge_networks([n1, n2])
"""
if layers is None:
raise Exception("layers should be a list of TensorLayer's Layers.")
layer = layers[0]
all_params = []
all_layers = []
all_drop = {}
for l in layers:
all_params.extend(l.all_params)
all_layers.extend(l.all_layers)
all_drop.update(l.all_drop)
layer.all_params = list(all_params)
layer.all_layers = list(all_layers)
layer.all_drop = dict(all_drop)
layer.all_layers = list_remove_repeat(layer.all_layers)
layer.all_params = list_remove_repeat(layer.all_params)
return layer
def initialize_global_variables(sess):
"""Initialize the global variables of TensorFlow.
Run ``sess.run(tf.global_variables_initializer())`` for TF 0.12+ or
``sess.run(tf.initialize_all_variables())`` for TF 0.11.
Parameters
----------
sess : Session
TensorFlow session.
"""
assert sess is not None
# try: # TF12+
sess.run(tf.global_variables_initializer())
# except: # TF11
# sess.run(tf.initialize_all_variables())
class Layer(object):
"""The basic :class:`Layer` class represents a single layer of a neural network.
It should be subclassed when implementing new types of layers.
Because each layer can keep track of the layer(s) feeding into it, a
network's output :class:`Layer` instance can double as a handle to the full
network.
Parameters
----------
prev_layer : :class:`Layer` or None
Previous layer (optional), for adding all properties of previous layer(s) to this layer.
name : str or None
A unique layer name.
Methods
---------
print_params(details=True, session=None)
Print all parameters of this network.
print_layers()
Print all outputs of all layers of this network.
count_params()
Return the number of parameters of this network.
Examples
---------
Define model
>>> x = tf.placeholder("float32", [None, 100])
>>> n = tl.layers.InputLayer(x, name='in')
>>> n = tl.layers.DenseLayer(n, 80, name='d1')
>>> n = tl.layers.DenseLayer(n, 80, name='d2')
Get information
>>> print(n)
... Last layer is: DenseLayer (d2) [None, 80]
>>> n.print_layers()
... [TL] layer 0: d1/Identity:0 (?, 80) float32
... [TL] layer 1: d2/Identity:0 (?, 80) float32
>>> n.print_params(False)
... [TL] param 0: d1/W:0 (100, 80) float32_ref
... [TL] param 1: d1/b:0 (80,) float32_ref
... [TL] param 2: d2/W:0 (80, 80) float32_ref
... [TL] param 3: d2/b:0 (80,) float32_ref
... [TL] num of params: 14560
>>> n.count_params()
... 14560
Slicing the outputs
>>> n2 = n[:, :30]
>>> print(n2)
... Last layer is: Layer (d2) [None, 30]
Iterating the outputs
>>> for l in n:
>>> print(l)
... Tensor("d1/Identity:0", shape=(?, 80), dtype=float32)
... Tensor("d2/Identity:0", shape=(?, 80), dtype=float32)
"""
# Added to allow auto-completion
inputs = None
outputs = None
all_layers = []
all_params = []
all_drop = {}
@deprecated_alias(layer='prev_layer', end_support_version=1.9) # TODO remove this line for the 1.9 release
def __init__(self, prev_layer, name=None):
if name is None:
raise ValueError('Layer must have a name.')
scope_name = tf.get_variable_scope().name
if scope_name:
name = scope_name + '/' + name
self.name = name
# get all properties of previous layer(s)
if isinstance(prev_layer, Layer): # 1. for normal layer have only 1 input i.e. DenseLayer
# Hint : list(), dict() is pass by value (shallow), without them,
# it is pass by reference.
self.all_layers = list(prev_layer.all_layers)
self.all_params = list(prev_layer.all_params)
self.all_drop = dict(prev_layer.all_drop)
elif isinstance(prev_layer, list): # 2. for layer have multiply inputs i.e. ConcatLayer
self.all_layers = list_remove_repeat(sum([l.all_layers for l in prev_layer], []))
self.all_params = list_remove_repeat(sum([l.all_params for l in prev_layer], []))
self.all_drop = dict(sum([list(l.all_drop.items()) for l in prev_layer], []))
elif isinstance(prev_layer, tf.Tensor):
raise Exception("Please use InputLayer to convert Tensor/Placeholder to TL layer")
elif prev_layer is not None: # tl.models
self.all_layers = list(prev_layer.all_layers)
self.all_params = list(prev_layer.all_params)
self.all_drop = dict(prev_layer.all_drop)
# raise Exception("Unknown layer type %s" % type(prev_layer))
def print_params(self, details=True, session=None):
"""Print all info of parameters in the network"""
for i, p in enumerate(self.all_params):
if details:
try:
# logging.info(" param {:3}: {:15} (mean: {:<18}, median: {:<18}, std: {:<18}) {}".format(i, str(p.eval().shape), p.eval().mean(), np.median(p.eval()), p.eval().std(), p.name))
val = p.eval(session=session)
logging.info(" param {:3}: {:20} {:15} {} (mean: {:<18}, median: {:<18}, std: {:<18}) ".format(
i, p.name, str(val.shape), p.dtype.name, val.mean(), np.median(val), val.std()))
except Exception as e:
logging.info(str(e))
raise Exception("Hint: print params details after tl.layers.initialize_global_variables(sess) or use network.print_params(False).")
else:
logging.info(" param {:3}: {:20} {:15} {}".format(i, p.name, str(p.get_shape()), p.dtype.name))
logging.info(" num of params: %d" % self.count_params())
def print_layers(self):
"""Print all info of layers in the network"""
for i, layer in enumerate(self.all_layers):
# logging.info(" layer %d: %s" % (i, str(layer)))
logging.info(" layer {:3}: {:20} {:15} {}".format(i, layer.name, str(layer.get_shape()), layer.dtype.name))
def count_params(self):
"""Return the number of parameters in the network"""
n_params = 0
for _i, p in enumerate(self.all_params):
n = 1
# for s in p.eval().shape:
for s in p.get_shape():
try:
s = int(s)
except Exception:
s = 1
if s:
n = n * s
n_params = n_params + n
return n_params
def __str__(self):
return " Last layer is: %s (%s) %s" % (self.__class__.__name__, self.name, self.outputs.get_shape().as_list())
def __getitem__(self, key):
net_new = Layer(prev_layer=None, name=self.name)
net_new.inputs = self.inputs
net_new.outputs = self.outputs[key]
net_new.all_layers = list(self.all_layers[:-1])
net_new.all_layers.append(net_new.outputs)
net_new.all_params = list(self.all_params)
net_new.all_drop = dict(self.all_drop)
return net_new
def __setitem__(self, key, item):
# self.outputs[key] = item
raise NotImplementedError("%s: __setitem__" % self.name)
def __delitem__(self, key):
raise NotImplementedError("%s: __delitem__" % self.name)
def __iter__(self):
for x in self.all_layers:
yield x
def __len__(self):
return len(self.all_layers)
class InputLayer(Layer):
"""
The :class:`InputLayer` class is the starting layer of a neural network.
Parameters
----------
inputs : placeholder or tensor
The input of a network.
name : str
A unique layer name.
"""
def __init__(self, inputs=None, name='input'):
super(InputLayer, self).__init__(prev_layer=None, name=name)
logging.info("InputLayer %s: %s" % (self.name, inputs.get_shape()))
self.outputs = inputs
self.all_layers = []
self.all_params = []
self.all_drop = {}
class OneHotInputLayer(Layer):
"""
The :class:`OneHotInputLayer` class is the starting layer of a neural network, see ``tf.one_hot``.
Parameters
----------
inputs : placeholder or tensor
The input of a network.
depth : None or int
If the input indices is rank N, the output will have rank N+1. The new axis is created at dimension `axis` (default: the new axis is appended at the end).
on_value : None or number
The value to represnt `ON`. If None, it will default to the value 1.
off_value : None or number
The value to represnt `OFF`. If None, it will default to the value 0.
axis : None or int
The axis.
dtype : None or TensorFlow dtype
The data type, None means tf.float32.
name : str
A unique layer name.
Examples
---------
>>> x = tf.placeholder(tf.int32, shape=[None])
>>> net = tl.layers.OneHotInputLayer(x, depth=8, name='onehot')
... (?, 8)
"""
def __init__(self, inputs=None, depth=None, on_value=None, off_value=None, axis=None, dtype=None, name='input'):
super(OneHotInputLayer, self).__init__(prev_layer=None, name=name)
logging.info("OneHotInputLayer %s: %s" % (self.name, inputs.get_shape()))
# assert depth != None, "depth is not given"
if depth is None:
logging.info(" [*] depth == None the number of output units is undefined")
self.outputs = tf.one_hot(inputs, depth, on_value=on_value, off_value=off_value, axis=axis, dtype=dtype)
self.all_layers = []
self.all_params = []
self.all_drop = {}
class Word2vecEmbeddingInputlayer(Layer):
"""
The :class:`Word2vecEmbeddingInputlayer` class is a fully connected layer.
For Word Embedding, words are input as integer index.
The output is the embedded word vector.
Parameters
----------
inputs : placeholder or tensor
The input of a network. For word inputs, please use integer index format, 2D tensor : [batch_size, num_steps(num_words)]
train_labels : placeholder
For word labels. integer index format
vocabulary_size : int
The size of vocabulary, number of words
embedding_size : int
The number of embedding dimensions
num_sampled : int
The mumber of negative examples for NCE loss
nce_loss_args : dictionary
The arguments for tf.nn.nce_loss()
E_init : initializer
The initializer for initializing the embedding matrix
E_init_args : dictionary
The arguments for embedding initializer
nce_W_init : initializer
The initializer for initializing the nce decoder weight matrix
nce_W_init_args : dictionary
The arguments for initializing the nce decoder weight matrix
nce_b_init : initializer
The initializer for initializing of the nce decoder bias vector
nce_b_init_args : dictionary
The arguments for initializing the nce decoder bias vector
name : str
A unique layer name
Attributes
----------
nce_cost : Tensor
The NCE loss.
outputs : Tensor
The embedding layer outputs.
normalized_embeddings : Tensor
Normalized embedding matrix.
Examples
--------
With TensorLayer : see ``tensorlayer/example/tutorial_word2vec_basic.py``
>>> batch_size = 8
>>> train_inputs = tf.placeholder(tf.int32, shape=(batch_size))
>>> train_labels = tf.placeholder(tf.int32, shape=(batch_size, 1))
>>> net = tl.layers.Word2vecEmbeddingInputlayer(inputs=train_inputs,
... train_labels=train_labels, vocabulary_size=1000, embedding_size=200,
... num_sampled=64, name='word2vec')
... (8, 200)
>>> cost = net.nce_cost
>>> train_params = net.all_params
>>> cost = net.nce_cost
>>> train_params = net.all_params
>>> train_op = tf.train.GradientDescentOptimizer(learning_rate).minimize(
... cost, var_list=train_params)
>>> normalized_embeddings = net.normalized_embeddings
Without TensorLayer : see ``tensorflow/examples/tutorials/word2vec/word2vec_basic.py``
>>> train_inputs = tf.placeholder(tf.int32, shape=(batch_size))
>>> train_labels = tf.placeholder(tf.int32, shape=(batch_size, 1))
>>> embeddings = tf.Variable(
... tf.random_uniform([vocabulary_size, embedding_size], -1.0, 1.0))
>>> embed = tf.nn.embedding_lookup(embeddings, train_inputs)
>>> nce_weights = tf.Variable(
... tf.truncated_normal([vocabulary_size, embedding_size],
... stddev=1.0 / math.sqrt(embedding_size)))
>>> nce_biases = tf.Variable(tf.zeros([vocabulary_size]))
>>> cost = tf.reduce_mean(
... tf.nn.nce_loss(weights=nce_weights, biases=nce_biases,
... inputs=embed, labels=train_labels,
... num_sampled=num_sampled, num_classes=vocabulary_size,
... num_true=1))
References
----------
`tensorflow/examples/tutorials/word2vec/word2vec_basic.py <https://github.com/tensorflow/tensorflow/blob/r0.7/tensorflow/examples/tutorials/word2vec/word2vec_basic.py>`__
"""
def __init__(
self,
inputs=None,
train_labels=None,
vocabulary_size=80000,
embedding_size=200,
num_sampled=64,
nce_loss_args=None,
E_init=tf.random_uniform_initializer(minval=-1.0, maxval=1.0),
E_init_args=None,
nce_W_init=tf.truncated_normal_initializer(stddev=0.03),
nce_W_init_args=None,
nce_b_init=tf.constant_initializer(value=0.0),
nce_b_init_args=None,
name='word2vec',
):
if nce_loss_args is None:
nce_loss_args = {}
if E_init_args is None:
E_init_args = {}
if nce_W_init_args is None:
nce_W_init_args = {}
if nce_b_init_args is None:
nce_b_init_args = {}
super(Word2vecEmbeddingInputlayer, self).__init__(prev_layer=None, name=name)
logging.info("Word2vecEmbeddingInputlayer %s: (%d, %d)" % (self.name, vocabulary_size, embedding_size))
self.inputs = inputs
# Look up embeddings for inputs.
# Note: a row of 'embeddings' is the vector representation of a word.
# for the sake of speed, it is better to slice the embedding matrix
# instead of transfering a word id to one-hot-format vector and then
# multiply by the embedding matrix.
# embed is the outputs of the hidden layer (embedding layer), it is a
# row vector with 'embedding_size' values.
with tf.variable_scope(name):
embeddings = tf.get_variable(
name='embeddings', shape=(vocabulary_size, embedding_size), initializer=E_init, dtype=LayersConfig.tf_dtype, **E_init_args)
embed = tf.nn.embedding_lookup(embeddings, self.inputs)
# Construct the variables for the NCE loss (i.e. negative sampling)
nce_weights = tf.get_variable(
name='nce_weights', shape=(vocabulary_size, embedding_size), initializer=nce_W_init, dtype=LayersConfig.tf_dtype, **nce_W_init_args)
nce_biases = tf.get_variable(name='nce_biases', shape=(vocabulary_size), initializer=nce_b_init, dtype=LayersConfig.tf_dtype, **nce_b_init_args)
# Compute the average NCE loss for the batch.
# tf.nce_loss automatically draws a new sample of the negative labels
# each time we evaluate the loss.
self.nce_cost = tf.reduce_mean(
tf.nn.nce_loss(
weights=nce_weights,
biases=nce_biases,
inputs=embed,
labels=train_labels,
num_sampled=num_sampled,
num_classes=vocabulary_size,
**nce_loss_args))
self.outputs = embed
self.normalized_embeddings = tf.nn.l2_normalize(embeddings, 1)
self.all_layers = [self.outputs]
self.all_params = [embeddings, nce_weights, nce_biases]
self.all_drop = {}
class EmbeddingInputlayer(Layer):
"""
The :class:`EmbeddingInputlayer` class is a look-up table for word embedding.
Word content are accessed using integer indexes, then the output is the embedded word vector.
To train a word embedding matrix, you can used :class:`Word2vecEmbeddingInputlayer`.
If you have a pre-trained matrix, you can assign the parameters into it.
Parameters
----------
inputs : placeholder
The input of a network. For word inputs.
Please use integer index format, 2D tensor : (batch_size, num_steps(num_words)).
vocabulary_size : int
The size of vocabulary, number of words.
embedding_size : int
The number of embedding dimensions.
E_init : initializer
The initializer for the embedding matrix.
E_init_args : dictionary
The arguments for embedding matrix initializer.
name : str
A unique layer name.
Attributes
----------
outputs : tensor
The embedding layer output is a 3D tensor in the shape: (batch_size, num_steps(num_words), embedding_size).
Examples
--------
>>> batch_size = 8
>>> x = tf.placeholder(tf.int32, shape=(batch_size, ))
>>> net = tl.layers.EmbeddingInputlayer(inputs=x, vocabulary_size=1000, embedding_size=50, name='embed')
... (8, 50)
"""
def __init__(
self,
inputs=None,
vocabulary_size=80000,
embedding_size=200,
E_init=tf.random_uniform_initializer(-0.1, 0.1),
E_init_args=None,
name='embedding',
):
if E_init_args is None:
E_init_args = {}
super(EmbeddingInputlayer, self).__init__(prev_layer=None, name=name)
logging.info("EmbeddingInputlayer %s: (%d, %d)" % (self.name, vocabulary_size, embedding_size))
self.inputs = inputs
with tf.variable_scope(name):
embeddings = tf.get_variable(
name='embeddings', shape=(vocabulary_size, embedding_size), initializer=E_init, dtype=LayersConfig.tf_dtype, **E_init_args)
embed = tf.nn.embedding_lookup(embeddings, self.inputs)
self.outputs = embed
self.all_layers = [self.outputs]
self.all_params = [embeddings]
self.all_drop = {}
class AverageEmbeddingInputlayer(Layer):
"""The :class:`AverageEmbeddingInputlayer` averages over embeddings of inputs.
This is often used as the input layer for models like DAN[1] and FastText[2].
Parameters
----------
inputs : placeholder or tensor
The network input.
For word inputs, please use integer index format, 2D tensor: (batch_size, num_steps(num_words)).
vocabulary_size : int
The size of vocabulary.
embedding_size : int
The dimension of the embedding vectors.
pad_value : int
The scalar padding value used in inputs, 0 as default.
embeddings_initializer : initializer
The initializer of the embedding matrix.
embeddings_kwargs : None or dictionary
The arguments to get embedding matrix variable.
name : str
A unique layer name.
References
----------
- [1] Iyyer, M., Manjunatha, V., Boyd-Graber, J., & Daum’e III, H. (2015). Deep Unordered Composition Rivals Syntactic Methods for Text Classification. In Association for Computational Linguistics.
- [2] Joulin, A., Grave, E., Bojanowski, P., & Mikolov, T. (2016). `Bag of Tricks for Efficient Text Classification. <http://arxiv.org/abs/1607.01759>`__
Examples
---------
>>> batch_size = 8
>>> length = 5
>>> x = tf.placeholder(tf.int32, shape=(batch_size, length))
>>> net = tl.layers.AverageEmbeddingInputlayer(x, vocabulary_size=1000, embedding_size=50, name='avg')
... (8, 50)
"""
def __init__(
self,
inputs,
vocabulary_size,
embedding_size,
pad_value=0,
embeddings_initializer=tf.random_uniform_initializer(-0.1, 0.1),
embeddings_kwargs=None,
name='average_embedding',
):
super(AverageEmbeddingInputlayer, self).__init__(prev_layer=None, name=name)
logging.info("AverageEmbeddingInputlayer %s: (%d, %d)" % (name, vocabulary_size, embedding_size))
# if embeddings_kwargs is None:
# embeddings_kwargs = {}
if inputs.get_shape().ndims != 2:
raise ValueError('inputs must be of size batch_size * batch_sentence_length')
self.inputs = inputs
with tf.variable_scope(name):
self.embeddings = tf.get_variable(
name='embeddings',
shape=(vocabulary_size, embedding_size),
initializer=embeddings_initializer,
dtype=LayersConfig.tf_dtype,
**(embeddings_kwargs or {})
# **embeddings_kwargs
) # **(embeddings_kwargs or {}),
word_embeddings = tf.nn.embedding_lookup(
self.embeddings,
self.inputs,
name='word_embeddings',
)
# Zero out embeddings of pad value
masks = tf.not_equal(self.inputs, pad_value, name='masks')
word_embeddings *= tf.cast(
tf.expand_dims(masks, axis=-1),
# tf.float32,
dtype=LayersConfig.tf_dtype,
)
sum_word_embeddings = tf.reduce_sum(word_embeddings, axis=1)
# Count number of non-padding words in each sentence
sentence_lengths = tf.count_nonzero(
masks,
axis=1,
keep_dims=True,
# dtype=tf.float32,
dtype=LayersConfig.tf_dtype,
name='sentence_lengths',
)
sentence_embeddings = tf.divide(
sum_word_embeddings,
sentence_lengths + 1e-8, # Add epsilon to avoid dividing by 0
name='sentence_embeddings')
self.outputs = sentence_embeddings
self.all_layers = [self.outputs]
self.all_params = [self.embeddings]
self.all_drop = {}
class DenseLayer(Layer):
"""The :class:`DenseLayer` class is a fully connected layer.
Parameters
----------
prev_layer : :class:`Layer`
Previous layer.
n_units : int
The number of units of this layer.
act : activation function
The activation function of this layer.
W_init : initializer
The initializer for the weight matrix.
b_init : initializer or None
The initializer for the bias vector. If None, skip biases.
W_init_args : dictionary
The arguments for the weight matrix initializer.
b_init_args : dictionary
The arguments for the bias vector initializer.
name : a str
A unique layer name.
Examples
--------
With TensorLayer
>>> net = tl.layers.InputLayer(x, name='input')
>>> net = tl.layers.DenseLayer(net, 800, act=tf.nn.relu, name='relu')
Without native TensorLayer APIs, you can do as follow.
>>> W = tf.Variable(
... tf.random_uniform([n_in, n_units], -1.0, 1.0), name='W')
>>> b = tf.Variable(tf.zeros(shape=[n_units]), name='b')
>>> y = tf.nn.relu(tf.matmul(inputs, W) + b)
Notes
-----
If the layer input has more than two axes, it needs to be flatten by using :class:`FlattenLayer`.
"""
@deprecated_alias(layer='prev_layer', end_support_version=1.9) # TODO remove this line for the 1.9 release
def __init__(
self,
prev_layer,
n_units=100,
act=tf.identity,
W_init=tf.truncated_normal_initializer(stddev=0.1),
b_init=tf.constant_initializer(value=0.0),
W_init_args=None,
b_init_args=None,
name='dense',
):
super(DenseLayer, self).__init__(prev_layer=prev_layer, name=name)
logging.info("DenseLayer %s: %d %s" % (name, n_units, act.__name__))
self.inputs = prev_layer.outputs
self.n_units = n_units
if W_init_args is None:
W_init_args = {}
if b_init_args is None:
b_init_args = {}
if self.inputs.get_shape().ndims != 2:
raise Exception("The input dimension must be rank 2, please reshape or flatten it")
n_in = int(self.inputs.get_shape()[-1])
with tf.variable_scope(name):
W = tf.get_variable(name='W', shape=(n_in, n_units), initializer=W_init, dtype=LayersConfig.tf_dtype, **W_init_args)
if b_init is not None:
try:
b = tf.get_variable(name='b', shape=(n_units), initializer=b_init, dtype=LayersConfig.tf_dtype, **b_init_args)
except Exception: # If initializer is a constant, do not specify shape.
b = tf.get_variable(name='b', initializer=b_init, dtype=LayersConfig.tf_dtype, **b_init_args)
self.outputs = act(tf.matmul(self.inputs, W) + b)
else:
self.outputs = act(tf.matmul(self.inputs, W))
self.all_layers.append(self.outputs)
if b_init is not None:
self.all_params.extend([W, b])
else:
self.all_params.append(W)
class ReconLayer(DenseLayer):
"""A reconstruction layer for :class:`DenseLayer` to implement AutoEncoder.
It is often used to pre-train the previous :class:`DenseLayer`
Parameters
----------
prev_layer : :class:`Layer`
Previous layer.
x_recon : placeholder or tensor
The target for reconstruction.
n_units : int
The number of units of the layer. It should equal ``x_recon``.
act : activation function
The activation function of this layer.
Normally, for sigmoid layer, the reconstruction activation is ``sigmoid``;
for rectifying layer, the reconstruction activation is ``softplus``.
name : str
A unique layer name.
Examples
--------
>>> x = tf.placeholder(tf.float32, shape=(None, 784))
>>> net = tl.layers.InputLayer(x, name='input')
>>> net = tl.layers.DenseLayer(net, n_units=196, act=tf.nn.sigmoid, name='dense')
>>> recon = tl.layers.ReconLayer(net, x_recon=x, n_units=784, act=tf.nn.sigmoid, name='recon')
>>> sess = tf.InteractiveSession()
>>> tl.layers.initialize_global_variables(sess)
>>> X_train, y_train, X_val, y_val, X_test, y_test = tl.files.load_mnist_dataset(shape=(-1, 784))
>>> recon.pretrain(sess, x=x, X_train=X_train, X_val=X_val, denoise_name=None, n_epoch=500, batch_size=128, print_freq=1, save=True, save_name='w1pre_')
Methods
-------
pretrain(sess, x, X_train, X_val, denoise_name=None, n_epoch=100, batch_size=128, print_freq=10, save=True, save_name='w1pre')
Start to pre-train the parameters of the previous DenseLayer.
Notes
-----
The input layer should be `DenseLayer` or a layer that has only one axes.
You may need to modify this part to define your own cost function.
By default, the cost is implemented as follow:
- For sigmoid layer, the implementation can be `UFLDL <http://deeplearning.stanford.edu/wiki/index.php/UFLDL_Tutorial>`__
- For rectifying layer, the implementation can be `Glorot (2011). Deep Sparse Rectifier Neural Networks <http://doi.org/10.1.1.208.6449>`__
"""
@deprecated_alias(layer='prev_layer', end_support_version=1.9) # TODO remove this line for the 1.9 release
def __init__(
self,
prev_layer,
x_recon=None,
n_units=784,
act=tf.nn.softplus,
name='recon',
):
super(ReconLayer, self).__init__(prev_layer=prev_layer, n_units=n_units, act=act, name=name)
logging.info("ReconLayer %s" % self.name)
# y : reconstruction outputs; train_params : parameters to train
# Note that: train_params = [W_encoder, b_encoder, W_decoder, b_encoder]
y = self.outputs
self.train_params = self.all_params[-4:]
# =====================================================================
#
# You need to modify the below cost function and optimizer so as to
# implement your own pre-train method.
#
# =====================================================================
lambda_l2_w = 0.004
learning_rate = 0.0001
logging.info(" lambda_l2_w: %f" % lambda_l2_w)
logging.info(" learning_rate: %f" % learning_rate)
# Mean-square-error i.e. quadratic-cost
mse = tf.reduce_sum(tf.squared_difference(y, x_recon), 1)
mse = tf.reduce_mean(mse) # in theano: mse = ((y - x) ** 2 ).sum(axis=1).mean()
# mse = tf.reduce_mean(tf.reduce_sum(tf.square(tf.sub(y, x_recon)), 1))
# mse = tf.reduce_mean(tf.squared_difference(y, x_recon)) # <haodong>: Error
# mse = tf.sqrt(tf.reduce_mean(tf.square(y - x_recon))) # <haodong>: Error
# Cross-entropy
# ce = cost.cross_entropy(y, x_recon) # <haodong>: list , list , Error (only be used for softmax output)
# ce = tf.reduce_mean(tf.nn.softmax_cross_entropy_with_logits(y, x_recon)) # <haodong>: list , list , Error (only be used for softmax output)
# ce = tf.reduce_mean(tf.nn.sparse_softmax_cross_entropy_with_logits(y, x_recon)) # <haodong>: list , index , Error (only be used for softmax output)
L2_w = tf.contrib.layers.l2_regularizer(lambda_l2_w)(self.train_params[0]) \
+ tf.contrib.layers.l2_regularizer(lambda_l2_w)(self.train_params[2]) # faster than the code below
# L2_w = lambda_l2_w * tf.reduce_mean(tf.square(self.train_params[0])) + lambda_l2_w * tf.reduce_mean( tf.square(self.train_params[2]))
# DropNeuro
# P_o = cost.lo_regularizer(0.03)(
# self.train_params[0]) # + cost.lo_regularizer(0.5)(self.train_params[2]) # <haodong>: if add lo on decoder, no neuron will be broken
# P_i = cost.li_regularizer(0.03)(self.train_params[0]) # + cost.li_regularizer(0.001)(self.train_params[2])
# L1 of activation outputs
activation_out = self.all_layers[-2]
L1_a = 0.001 * tf.reduce_mean(activation_out) # <haodong>: theano: T.mean( self.a[i] ) # some neuron are broken, white and black
# L1_a = 0.001 * tf.reduce_mean( tf.reduce_sum(activation_out, 0) ) # <haodong>: some neuron are broken, white and black
# L1_a = 0.001 * 100 * tf.reduce_mean( tf.reduce_sum(activation_out, 1) ) # <haodong>: some neuron are broken, white and black
# KL Divergence
beta = 4
rho = 0.15
p_hat = tf.reduce_mean(activation_out, 0) # theano: p_hat = T.mean( self.a[i], axis=0 )
try: # TF1.0
KLD = beta * tf.reduce_sum(rho * tf.log(tf.divide(rho, p_hat)) + (1 - rho) * tf.log((1 - rho) / (tf.subtract(float(1), p_hat))))
except Exception: # TF0.12
KLD = beta * tf.reduce_sum(rho * tf.log(tf.div(rho, p_hat)) + (1 - rho) * tf.log((1 - rho) / (tf.sub(float(1), p_hat))))
# KLD = beta * tf.reduce_sum( rho * tf.log(rho/ p_hat) + (1- rho) * tf.log((1- rho)/(1- p_hat)) )
# theano: L1_a = l1_a[i] * T.sum( rho[i] * T.log(rho[i]/ p_hat) + (1- rho[i]) * T.log((1- rho[i])/(1- p_hat)) )
# Total cost
if act == tf.nn.softplus:
logging.info(' use: mse, L2_w, L1_a')
self.cost = mse + L1_a + L2_w
elif act == tf.nn.sigmoid:
# ----------------------------------------------------
# Cross-entropy was used in Denoising AE
# logging.info(' use: ce, L2_w, KLD')
# self.cost = ce + L2_w + KLD
# ----------------------------------------------------
# Mean-squared-error was used in Vanilla AE
logging.info(' use: mse, L2_w, KLD')
self.cost = mse + L2_w + KLD
# ----------------------------------------------------
# Add DropNeuro penalty (P_o) can remove neurons of AE
# logging.info(' use: mse, L2_w, KLD, P_o')
# self.cost = mse + L2_w + KLD + P_o
# ----------------------------------------------------
# Add DropNeuro penalty (P_i) can remove neurons of previous layer
# If previous layer is InputLayer, it means remove useless features
# logging.info(' use: mse, L2_w, KLD, P_i')
# self.cost = mse + L2_w + KLD + P_i
else:
raise Exception("Don't support the given reconstruct activation function")
self.train_op = tf.train.AdamOptimizer(
learning_rate, beta1=0.9, beta2=0.999, epsilon=1e-08, use_locking=False).minimize(
self.cost, var_list=self.train_params)
# self.train_op = tf.train.GradientDescentOptimizer(1.0).minimize(self.cost, var_list=self.train_params)
def pretrain(self, sess, x, X_train, X_val, denoise_name=None, n_epoch=100, batch_size=128, print_freq=10, save=True, save_name='w1pre_'):
# ====================================================
#
# You need to modify the cost function in __init__() so as to
# get your own pre-train method.
#
# ====================================================
logging.info(" [*] %s start pretrain" % self.name)
logging.info(" batch_size: %d" % batch_size)
if denoise_name:
logging.info(" denoising layer keep: %f" % self.all_drop[LayersConfig.set_keep[denoise_name]])
dp_denoise = self.all_drop[LayersConfig.set_keep[denoise_name]]
else:
logging.info(" no denoising layer")
for epoch in range(n_epoch):
start_time = time.time()
for X_train_a, _ in iterate.minibatches(X_train, X_train, batch_size, shuffle=True):
dp_dict = utils.dict_to_one(self.all_drop)
if denoise_name:
dp_dict[LayersConfig.set_keep[denoise_name]] = dp_denoise
feed_dict = {x: X_train_a}
feed_dict.update(dp_dict)
sess.run(self.train_op, feed_dict=feed_dict)
if epoch + 1 == 1 or (epoch + 1) % print_freq == 0:
logging.info("Epoch %d of %d took %fs" % (epoch + 1, n_epoch, time.time() - start_time))
train_loss, n_batch = 0, 0
for X_train_a, _ in iterate.minibatches(X_train, X_train, batch_size, shuffle=True):
dp_dict = utils.dict_to_one(self.all_drop)
feed_dict = {x: X_train_a}
feed_dict.update(dp_dict)
err = sess.run(self.cost, feed_dict=feed_dict)
train_loss += err
n_batch += 1
logging.info(" train loss: %f" % (train_loss / n_batch))
val_loss, n_batch = 0, 0
for X_val_a, _ in iterate.minibatches(X_val, X_val, batch_size, shuffle=True):
dp_dict = utils.dict_to_one(self.all_drop)
feed_dict = {x: X_val_a}
feed_dict.update(dp_dict)
err = sess.run(self.cost, feed_dict=feed_dict)
val_loss += err
n_batch += 1
logging.info(" val loss: %f" % (val_loss / n_batch))
if save:
try:
visualize.draw_weights(
self.train_params[0].eval(), second=10, saveable=True, shape=[28, 28], name=save_name + str(epoch + 1), fig_idx=2012)
files.save_npz([self.all_params[0]], name=save_name + str(epoch + 1) + '.npz')
except Exception:
raise Exception(
"You should change the visualize.W() in ReconLayer.pretrain(), if you want to save the feature images for different dataset")
class DropoutLayer(Layer):
"""
The :class:`DropoutLayer` class is a noise layer which randomly set some
activations to zero according to a keeping probability.
Parameters
----------
prev_layer : :class:`Layer`
Previous layer.
keep : float
The keeping probability.
The lower the probability it is, the more activations are set to zero.
is_fix : boolean
Fixing probability or nor. Default is False.
If True, the keeping probability is fixed and cannot be changed via `feed_dict`.
is_train : boolean
Trainable or not. If False, skip this layer. Default is True.
seed : int or None
The seed for random dropout.
name : str
A unique layer name.
Examples
--------
Method 1: Using ``all_drop`` see `tutorial_mlp_dropout1.py <https://github.com/tensorlayer/tensorlayer/blob/master/example/tutorial_mlp_dropout1.py>`__
>>> net = tl.layers.InputLayer(x, name='input_layer')
>>> net = tl.layers.DropoutLayer(net, keep=0.8, name='drop1')
>>> net = tl.layers.DenseLayer(net, n_units=800, act=tf.nn.relu, name='relu1')
>>> ...
>>> # For training, enable dropout as follow.
>>> feed_dict = {x: X_train_a, y_: y_train_a}
>>> feed_dict.update( net.all_drop ) # enable noise layers
>>> sess.run(train_op, feed_dict=feed_dict)
>>> ...
>>> # For testing, disable dropout as follow.
>>> dp_dict = tl.utils.dict_to_one( net.all_drop ) # disable noise layers
>>> feed_dict = {x: X_val_a, y_: y_val_a}
>>> feed_dict.update(dp_dict)
>>> err, ac = sess.run([cost, acc], feed_dict=feed_dict)
>>> ...
Method 2: Without using ``all_drop`` see `tutorial_mlp_dropout2.py <https://github.com/tensorlayer/tensorlayer/blob/master/example/tutorial_mlp_dropout2.py>`__
>>> def mlp(x, is_train=True, reuse=False):
>>> with tf.variable_scope("MLP", reuse=reuse):
>>> tl.layers.set_name_reuse(reuse)
>>> net = tl.layers.InputLayer(x, name='input')
>>> net = tl.layers.DropoutLayer(net, keep=0.8, is_fix=True,
>>> is_train=is_train, name='drop1')
>>> ...
>>> return net
>>> # define inferences
>>> net_train = mlp(x, is_train=True, reuse=False)
>>> net_test = mlp(x, is_train=False, reuse=True)
"""
@deprecated_alias(layer='prev_layer', end_support_version=1.9) # TODO remove this line for the 1.9 release
def __init__(
self,
prev_layer,
keep=0.5,
is_fix=False,
is_train=True,
seed=None,
name='dropout_layer',
):
super(DropoutLayer, self).__init__(prev_layer=prev_layer, name=name)
logging.info("DropoutLayer %s: keep:%f is_fix:%s" % (name, keep, is_fix))
if is_train is False:
logging.info(" skip DropoutLayer")
self.outputs = prev_layer.outputs
# self.all_layers = list(layer.all_layers)
# self.all_params = list(layer.all_params)
# self.all_drop = dict(layer.all_drop)
else:
self.inputs = prev_layer.outputs
# The name of placeholder for keep_prob is the same with the name
# of the Layer.
if is_fix:
self.outputs = tf.nn.dropout(self.inputs, keep, seed=seed, name=name)
else:
LayersConfig.set_keep[name] = tf.placeholder(tf.float32)
self.outputs = tf.nn.dropout(self.inputs, LayersConfig.set_keep[name], seed=seed, name=name) # 1.2
# self.all_layers = list(layer.all_layers)
# self.all_params = list(layer.all_params)
# self.all_drop = dict(layer.all_drop)
if is_fix is False:
self.all_drop.update({LayersConfig.set_keep[name]: keep})
self.all_layers.append(self.outputs)
# logging.info(set_keep[name])
# Tensor("Placeholder_2:0", dtype=float32)
# logging.info(denoising1)
# Tensor("Placeholder_2:0", dtype=float32)
# logging.info(self.all_drop[denoising1])
# 0.8
#
# https://www.tensorflow.org/versions/r0.8/tutorials/mnist/tf/index.html
# The optional feed_dict argument allows the caller to override the
# value of tensors in the graph. Each key in feed_dict can be one of
# the following types:
# If the key is a Tensor, the value may be a Python scalar, string,
# list, or numpy ndarray that can be converted to the same dtype as that
# tensor. Additionally, if the key is a placeholder, the shape of the
# value will be checked for compatibility with the placeholder.
# If the key is a SparseTensor, the value should be a SparseTensorValue.
class GaussianNoiseLayer(Layer):
"""
The :class:`GaussianNoiseLayer` class is noise layer that adding noise with
gaussian distribution to the activation.
Parameters
------------
prev_layer : :class:`Layer`
Previous layer.
mean : float
The mean. Default is 0.
stddev : float
The standard deviation. Default is 1.
is_train : boolean
Is trainable layer. If False, skip this layer. default is True.
seed : int or None
The seed for random noise.
name : str
A unique layer name.
Examples
----------
>>> x = tf.placeholder(tf.float32, shape=(100, 784))
>>> net = tl.layers.InputLayer(x, name='input')
>>> net = tl.layers.DenseLayer(net, n_units=100, act=tf.nn.relu, name='dense3')
>>> net = tl.layers.GaussianNoiseLayer(net, name='gaussian')
... (64, 100)
"""
@deprecated_alias(layer='prev_layer', end_support_version=1.9) # TODO remove this line for the 1.9 release
def __init__(
self,
prev_layer,
mean=0.0,
stddev=1.0,
is_train=True,
seed=None,
name='gaussian_noise_layer',
):
super(GaussianNoiseLayer, self).__init__(prev_layer=prev_layer, name=name)
if is_train is False:
logging.info(" skip GaussianNoiseLayer")
self.outputs = prev_layer.outputs
# self.all_layers = list(layer.all_layers)
# self.all_params = list(layer.all_params)
# self.all_drop = dict(layer.all_drop)
else:
self.inputs = prev_layer.outputs
logging.info("GaussianNoiseLayer %s: mean:%f stddev:%f" % (self.name, mean, stddev))
with tf.variable_scope(name):
# noise = np.random.normal(0.0 , sigma , tf.to_int64(self.inputs).get_shape())
noise = tf.random_normal(shape=self.inputs.get_shape(), mean=mean, stddev=stddev, seed=seed)
self.outputs = self.inputs + noise
# self.all_layers = list(layer.all_layers)
# self.all_params = list(layer.all_params)
# self.all_drop = dict(layer.all_drop)
self.all_layers.append(self.outputs)
class DropconnectDenseLayer(Layer):
"""
The :class:`DropconnectDenseLayer` class is :class:`DenseLayer` with DropConnect
behaviour which randomly removes connections between this layer and the previous
layer according to a keeping probability.
Parameters
----------
prev_layer : :class:`Layer`
Previous layer.
keep : float
The keeping probability.
The lower the probability it is, the more activations are set to zero.
n_units : int
The number of units of this layer.
act : activation function
The activation function of this layer.
W_init : weights initializer
The initializer for the weight matrix.
b_init : biases initializer
The initializer for the bias vector.
W_init_args : dictionary
The arguments for the weight matrix initializer.
b_init_args : dictionary
The arguments for the bias vector initializer.
name : str
A unique layer name.
Examples
--------
>>> net = tl.layers.InputLayer(x, name='input_layer')
>>> net = tl.layers.DropconnectDenseLayer(net, keep=0.8,
... n_units=800, act=tf.nn.relu, name='relu1')
>>> net = tl.layers.DropconnectDenseLayer(net, keep=0.5,
... n_units=800, act=tf.nn.relu, name='relu2')
>>> net = tl.layers.DropconnectDenseLayer(net, keep=0.5,
... n_units=10, name='output')
References
----------
- `Wan, L. (2013). Regularization of neural networks using dropconnect <http://machinelearning.wustl.edu/mlpapers/papers/icml2013_wan13>`__
"""
@deprecated_alias(layer='prev_layer', end_support_version=1.9) # TODO remove this line for the 1.9 release
def __init__(
self,
prev_layer,
keep=0.5,
n_units=100,
act=tf.identity,
W_init=tf.truncated_normal_initializer(stddev=0.1),
b_init=tf.constant_initializer(value=0.0),
W_init_args=None,
b_init_args=None,
name='dropconnect_layer',
):
super(DropconnectDenseLayer, self).__init__(prev_layer=prev_layer, name=name)
logging.info("DropconnectDenseLayer %s: %d %s" % (name, n_units, act.__name__))
if W_init_args is None:
W_init_args = {}
if b_init_args is None:
b_init_args = {}
self.inputs = prev_layer.outputs
if self.inputs.get_shape().ndims != 2:
raise Exception("The input dimension must be rank 2")
n_in = int(self.inputs.get_shape()[-1])
self.n_units = n_units
with tf.variable_scope(name):
W = tf.get_variable(name='W', shape=(n_in, n_units), initializer=W_init, dtype=LayersConfig.tf_dtype, **W_init_args)
b = tf.get_variable(name='b', shape=(n_units), initializer=b_init, dtype=LayersConfig.tf_dtype, **b_init_args)
# self.outputs = act(tf.matmul(self.inputs, W) + b)
LayersConfig.set_keep[name] = tf.placeholder(tf.float32)
W_dropcon = tf.nn.dropout(W, LayersConfig.set_keep[name])
self.outputs = act(tf.matmul(self.inputs, W_dropcon) + b)
# self.all_layers = list(layer.all_layers)
# self.all_params = list(layer.all_params)
# self.all_drop = dict(layer.all_drop)
self.all_drop.update({LayersConfig.set_keep[name]: keep})
self.all_layers.append(self.outputs)
self.all_params.extend([W, b])
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"tensorflow.get_variable",
"tensorflow.count_nonzero",
"tensorflow.reduce_sum",
"tensorflow.global_variables",
"tensorflow.train.AdamOptimizer",
"tensorflow.nn.nce_loss",
"tensorflow.all_variables",
"tensorflow.random_uniform_initializer",
"tensorflow.truncated_normal_initializer",
"tensorflow.divide",
"tensorflow.div",
"tensorflow.trainable_variables",
"tensorflow.python.util.deprecation.deprecated",
"tensorflow.nn.dropout",
"tensorflow.nn.l2_normalize",
"tensorflow.matmul",
"numpy.median",
"tensorflow.placeholder",
"tensorflow.global_variables_initializer",
"tensorflow.one_hot",
"tensorflow.nn.embedding_lookup",
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"tensorflow.reduce_mean",
"tensorflow.reshape",
"tensorflow.expand_dims",
"tensorflow.constant_initializer",
"tensorflow.contrib.layers.l2_regularizer",
"tensorflow.variable_scope",
"tensorflow.get_variable_scope",
"tensorflow.squared_difference"
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antonykamp/GPflow | 1831a5d19a50ff525af0ce931c8b82f6306d8196 | # ---
# jupyter:
# jupytext:
# formats: ipynb,.pct.py:percent
# text_representation:
# extension: .py
# format_name: percent
# format_version: '1.3'
# jupytext_version: 1.4.0
# kernelspec:
# display_name: Python 3
# language: python
# name: python3
# ---
# %% [markdown]
# # MCMC (Markov Chain Monte Carlo)
# %% [markdown]
# GPflow allows you to approximate the posterior over the latent functions of its models (and over the hyperparemeters after setting a prior for those) using Hamiltonian Monte Carlo (HMC)
# %%
import numpy as np
import matplotlib.pyplot as plt
import tensorflow as tf
import tensorflow_probability as tfp
from tensorflow_probability import distributions as tfd
import gpflow
from gpflow.ci_utils import ci_niter
from gpflow import set_trainable
from multiclass_classification import plot_from_samples, colors
gpflow.config.set_default_float(np.float64)
gpflow.config.set_default_jitter(1e-4)
gpflow.config.set_default_summary_fmt("notebook")
# convert to float64 for tfp to play nicely with gpflow in 64
f64 = gpflow.utilities.to_default_float
tf.random.set_seed(123)
# %matplotlib inline
# %% [markdown]
#
# In this notebook, we provide three examples:
#
# * [Example 1](#Example-1:-GP-regression): Sampling hyperparameters in Gaussian process regression
# * [Example 2](#Example-2:-Sparse-MC-for-multiclass-classification): Sparse Variational MC applied to the multiclass classification problem
# * [Example 3](#Example-3:-Fully-Bayesian-inference-for-generalized-GP-models-with-HMC): Full Bayesian inference for Gaussian process models
# %% [markdown]
# ## Example 1: GP regression
# %% [markdown]
# We first consider the GP regression (with Gaussian noise) for which the marginal likelihood $p(\mathbf y\,|\,\theta)$ can be computed exactly.
#
# The GPR model parameterized by $\theta = [\tau]$ is given by
# \begin{equation}
# Y_i = f(X_i) + \varepsilon_i
# \end{equation}
# where $f \sim \mathcal{GP}(\mu(.), k(., .))$, and $\varepsilon \sim \mathcal{N}(0, \tau^2 I)$.
#
# See the [Basic (Gaussian likelihood) GP regression model](../basics/regression.ipynb) for more details on GPR and for a treatment of the direct likelihood maximization.
#
#
# %% [markdown]
# ### Data for a one-dimensional regression problem
# %%
rng = np.random.RandomState(42)
N = 30
def synthetic_data(num: int, rng: np.random.RandomState):
X = rng.rand(num, 1)
Y = np.sin(12 * X) + 0.66 * np.cos(25 * X) + rng.randn(num, 1) * 0.1 + 3
return X, Y
data = (X, Y) = synthetic_data(N, rng)
plt.figure(figsize=(12, 6))
plt.plot(X, Y, "kx", mew=2)
plt.xlabel("$X$")
plt.ylabel("$Y$")
plt.title("toy data")
plt.show()
# %% [markdown]
# ### MCMC for hyperparameters $\theta$
#
# We now want to sample from the posterior over $\theta$:
# \begin{equation}
# p(\theta|\mathbf{y}) \propto p(\mathbf{y}|\theta)p(\theta)
# \end{equation}
#
# Firstly, we build the GPR model.
# %%
kernel = gpflow.kernels.Matern52(lengthscales=0.3)
mean_function = gpflow.mean_functions.Linear(1.0, 0.0)
model = gpflow.models.GPR(data, kernel, mean_function, noise_variance=0.01)
# %% [markdown]
# Secondly, we initialize the model to the maximum likelihood solution.
# %%
optimizer = gpflow.optimizers.Scipy()
optimizer.minimize(model.training_loss, model.trainable_variables)
print(f"log posterior density at optimum: {model.log_posterior_density()}")
# %% [markdown]
# Thirdly, we add priors to the hyperparameters.
# %%
# tfp.distributions dtype is inferred from parameters - so convert to 64-bit
model.kernel.lengthscales.prior = tfd.Gamma(f64(1.0), f64(1.0))
model.kernel.variance.prior = tfd.Gamma(f64(1.0), f64(1.0))
model.likelihood.variance.prior = tfd.Gamma(f64(1.0), f64(1.0))
model.mean_function.A.prior = tfd.Normal(f64(0.0), f64(10.0))
model.mean_function.b.prior = tfd.Normal(f64(0.0), f64(10.0))
gpflow.utilities.print_summary(model)
# %% [markdown]
# We now sample from the posterior using HMC.
# %%
num_burnin_steps = ci_niter(300)
num_samples = ci_niter(500)
# Note that here we need model.trainable_parameters, not trainable_variables - only parameters can have priors!
hmc_helper = gpflow.optimizers.SamplingHelper(
model.log_posterior_density, model.trainable_parameters
)
hmc = tfp.mcmc.HamiltonianMonteCarlo(
target_log_prob_fn=hmc_helper.target_log_prob_fn, num_leapfrog_steps=10, step_size=0.01
)
adaptive_hmc = tfp.mcmc.SimpleStepSizeAdaptation(
hmc, num_adaptation_steps=10, target_accept_prob=f64(0.75), adaptation_rate=0.1
)
@tf.function
def run_chain_fn():
return tfp.mcmc.sample_chain(
num_results=num_samples,
num_burnin_steps=num_burnin_steps,
current_state=hmc_helper.current_state,
kernel=adaptive_hmc,
trace_fn=lambda _, pkr: pkr.inner_results.is_accepted,
)
samples, traces = run_chain_fn()
parameter_samples = hmc_helper.convert_to_constrained_values(samples)
param_to_name = {param: name for name, param in gpflow.utilities.parameter_dict(model).items()}
# %% [markdown]
# **NOTE:** All the Hamiltonian MCMC sampling takes place in an unconstrained space (where constrained parameters have been mapped via a bijector to an unconstrained space). This makes the optimization, as required in the gradient step, much easier.
#
# However, we often wish to sample the constrained parameter values, not the unconstrained one. The `SamplingHelper` helps us convert our unconstrained values to constrained parameter ones.
#
# %%
def plot_samples(samples, parameters, y_axis_label):
plt.figure(figsize=(8, 4))
for val, param in zip(samples, parameters):
plt.plot(tf.squeeze(val), label=param_to_name[param])
plt.legend(bbox_to_anchor=(1.0, 1.0))
plt.xlabel("HMC iteration")
plt.ylabel(y_axis_label)
plot_samples(samples, model.trainable_parameters, "unconstrained values")
plot_samples(parameter_samples, model.trainable_parameters, "constrained parameter values")
# %% [markdown]
# You can also inspect the marginal distribution of samples.
# %%
def marginal_samples(samples, parameters, y_axis_label):
fig, axes = plt.subplots(1, len(param_to_name), figsize=(15, 3), constrained_layout=True)
for ax, val, param in zip(axes, samples, parameters):
ax.hist(np.stack(val).flatten(), bins=20)
ax.set_title(param_to_name[param])
fig.suptitle(y_axis_label)
plt.show()
marginal_samples(samples, model.trainable_parameters, "unconstrained variable samples")
marginal_samples(parameter_samples, model.trainable_parameters, "constrained parameter samples")
# %% [markdown]
#
#
# **NOTE:** The sampler runs in unconstrained space (so that positive parameters remain positive, and parameters that are not trainable are ignored).
#
# For serious analysis you most certainly want to run the sampler longer, with multiple chains and convergence checks. This will do for illustration though!
#
# %%
def plot_joint_marginals(samples, parameters, y_axis_label):
name_to_index = {param_to_name[param]: i for i, param in enumerate(parameters)}
f, axs = plt.subplots(1, 3, figsize=(12, 4), constrained_layout=True)
axs[0].plot(
samples[name_to_index[".likelihood.variance"]],
samples[name_to_index[".kernel.variance"]],
"k.",
alpha=0.15,
)
axs[0].set_xlabel("noise_variance")
axs[0].set_ylabel("signal_variance")
axs[1].plot(
samples[name_to_index[".likelihood.variance"]],
samples[name_to_index[".kernel.lengthscales"]],
"k.",
alpha=0.15,
)
axs[1].set_xlabel("noise_variance")
axs[1].set_ylabel("lengthscale")
axs[2].plot(
samples[name_to_index[".kernel.lengthscales"]],
samples[name_to_index[".kernel.variance"]],
"k.",
alpha=0.1,
)
axs[2].set_xlabel("lengthscale")
axs[2].set_ylabel("signal_variance")
f.suptitle(y_axis_label)
plt.show()
plot_joint_marginals(samples, model.trainable_parameters, "unconstrained variable samples")
plot_joint_marginals(parameter_samples, model.trainable_parameters, "parameter samples")
# %% [markdown]
# To plot the posterior of predictions, we'll iterate through the samples and set the model state with each sample. Then, for that state (set of hyperparameters) we'll draw some samples from the prediction function.
# %%
# plot the function posterior
xx = np.linspace(-0.1, 1.1, 100)[:, None]
plt.figure(figsize=(12, 6))
for i in range(0, num_samples, 20):
for var, var_samples in zip(hmc_helper.current_state, samples):
var.assign(var_samples[i])
f = model.predict_f_samples(xx, 1)
plt.plot(xx, f[0, :, :], "C0", lw=2, alpha=0.3)
plt.plot(X, Y, "kx", mew=2)
_ = plt.xlim(xx.min(), xx.max())
_ = plt.ylim(0, 6)
plt.xlabel("$x$")
plt.ylabel("$f|X,Y$")
plt.title("Posterior GP samples")
plt.show()
# %% [markdown]
# ## Example 2: Sparse MC for multiclass classification
# %% [markdown]
# We now consider the multiclass classification problem (see the [Multiclass classification](../advanced/multiclass_classification.ipynb) notebook). Here the marginal likelihood is not available in closed form. Instead we use a sparse variational approximation where we approximate the posterior for each GP as $q(f_c) \propto p(f_c|\mathbf{u}_c)q(\mathbf{u}_c)$
#
# In the standard Sparse Variational GP (SVGP) formulation, $q(\mathbf{u_c})$ is parameterized as a multivariate Gaussian.
#
# An alternative is to directly sample from the optimal $q(\mathbf{u}_c)$; this is what Sparse Variational GP using MCMC (SGPMC) does.
# %% [markdown]
# We first build a multiclass classification dataset.
# %%
# Generate data by sampling from SquaredExponential kernel, and classifying with the argmax
rng = np.random.RandomState(42)
C, N = 3, 100
X = rng.rand(N, 1)
kernel = gpflow.kernels.SquaredExponential(lengthscales=0.1)
K = kernel.K(X) + np.eye(N) * 1e-6
f = rng.multivariate_normal(mean=np.zeros(N), cov=K, size=(C)).T
Y = np.argmax(f, 1).reshape(-1,).astype(int)
# One-hot encoding
Y_hot = np.zeros((N, C), dtype=bool)
Y_hot[np.arange(N), Y] = 1
data = (X, Y)
# %%
plt.figure(figsize=(12, 6))
order = np.argsort(X.reshape(-1,))
for c in range(C):
plt.plot(X[order], f[order, c], ".", color=colors[c], label=str(c))
plt.plot(X[order], Y_hot[order, c], "-", color=colors[c])
plt.legend()
plt.xlabel("$X$")
plt.ylabel("Latent (dots) and one-hot labels (lines)")
plt.title("Sample from the joint $p(Y, \mathbf{f})$")
plt.grid()
plt.show()
# %% [markdown]
# We then build the SGPMC model.
# %%
kernel = gpflow.kernels.Matern32(lengthscales=0.1) + gpflow.kernels.White(variance=0.01)
model = gpflow.models.SGPMC(
data,
kernel=kernel,
likelihood=gpflow.likelihoods.MultiClass(3),
inducing_variable=X[::5].copy(),
num_latent_gps=3,
)
model.kernel.kernels[0].variance.prior = tfd.Gamma(f64(1.0), f64(1.0))
model.kernel.kernels[0].lengthscales.prior = tfd.Gamma(f64(2.0), f64(2.0))
set_trainable(model.kernel.kernels[1].variance, False)
gpflow.utilities.print_summary(model)
# %%
# The inducing point locations Z should not be included in the MCMC (see [Hensman et al. (2015)](https://papers.nips.cc/paper/5875-mcmc-for-variationally-sparse-gaussian-processes), hence we set them to non-trainable.
set_trainable(model.inducing_variable, False)
# %% [markdown]
# The chain of samples for $\mathbf{u}_c, \theta$ is initialized at the value maximizing $p(Y|\mathbf{u}_c, \theta)$.
# %%
optimizer = gpflow.optimizers.Scipy()
optimizer.minimize(model.training_loss, model.trainable_variables, options={"maxiter": 20})
print(f"log posterior density at optimum: {model.log_posterior_density()}")
# %% [markdown]
# Sampling starts with a 'burn in' period.
# %%
num_burnin_steps = ci_niter(100)
num_samples = ci_niter(500)
# Note that here we need model.trainable_parameters, not trainable_variables - only parameters can have priors!
hmc_helper = gpflow.optimizers.SamplingHelper(
model.log_posterior_density, model.trainable_parameters
)
hmc = tfp.mcmc.HamiltonianMonteCarlo(
target_log_prob_fn=hmc_helper.target_log_prob_fn, num_leapfrog_steps=10, step_size=0.01
)
adaptive_hmc = tfp.mcmc.SimpleStepSizeAdaptation(
hmc, num_adaptation_steps=10, target_accept_prob=f64(0.75), adaptation_rate=0.1
)
@tf.function
def run_chain_fn():
return tfp.mcmc.sample_chain(
num_results=num_samples,
num_burnin_steps=num_burnin_steps,
current_state=hmc_helper.current_state,
kernel=adaptive_hmc,
trace_fn=lambda _, pkr: pkr.inner_results.is_accepted,
)
samples, _ = run_chain_fn()
constrained_samples = hmc_helper.convert_to_constrained_values(samples)
# %% [markdown]
# Statistics of the posterior samples can now be reported.
# %%
plot_from_samples(model, X, Y, model.trainable_parameters, constrained_samples, thin=10)
# %% [markdown]
# You can also display the sequence of sampled hyperparameters.
# %%
param_to_name = {param: name for name, param in gpflow.utilities.parameter_dict(model).items()}
name_to_index = {param_to_name[param]: i for i, param in enumerate(model.trainable_parameters)}
hyperparameters = [".kernel.kernels[0].lengthscales", ".kernel.kernels[0].variance"]
plt.figure(figsize=(8, 4))
for param_name in hyperparameters:
plt.plot(constrained_samples[name_to_index[param_name]], label=param_name)
plt.legend(bbox_to_anchor=(1.0, 1.0))
plt.xlabel("HMC iteration")
_ = plt.ylabel("hyperparameter value")
# %% [markdown]
# ## Example 3: Fully Bayesian inference for generalized GP models with HMC
# %% [markdown]
# You can construct very flexible models with Gaussian processes by combining them with different likelihoods (sometimes called 'families' in the GLM literature). This makes inference of the GP intractable because the likelihoods are not generally conjugate to the Gaussian process. The general form of the model is
# \begin{align}
# \theta &\sim p(\theta) \\
# f &\sim \mathcal {GP}(m(x; \theta),\, k(x, x'; \theta)) \\
# y_i &\sim p(y | g(f(x_i))\,.
# \end{align}
#
#
# To perform inference in this model, we'll run MCMC using Hamiltonian Monte Carlo (HMC) over the function values and the parameters $\theta$ jointly. The key to an effective scheme is rotation of the field using the Cholesky decomposition. We write:
#
# \begin{align}
# \theta &\sim p(\theta) \\
# v &\sim \mathcal {N}(0,\, I) \\
# LL^\top &= K \\
# f &= m + Lv \\
# y_i &\sim p(y | g(f(x_i))\,.
# \end{align}
#
# Joint HMC over $v$ and the function values is not widely adopted in the literature because of the difficulty in differentiating $LL^\top=K$. We've made this derivative available in TensorFlow, and so application of HMC is relatively straightforward.
# %% [markdown]
# ### Exponential Regression
# We consider an exponential regression model:
# \begin{align}
# \theta &\sim p(\theta) \\
# f &\sim \mathcal {GP}(0, k(x, x'; \theta)) \\
# f_i &= f(x_i) \\
# y_i &\sim \mathcal {Exp} (e^{f_i})
# \end{align}
#
# We'll use MCMC to deal with both the kernel parameters $\theta$ and the latent function values $f$. Firstly, generate a data set.
# %%
rng = np.random.RandomState(14)
X = np.linspace(-3, 3, 20)
Y = rng.exponential(np.sin(X) ** 2)
plt.figure()
plt.plot(X, Y, "x")
plt.xlabel("input $X$")
plt.ylabel("output $Y$")
plt.title("toy dataset")
plt.show()
data = (X[:, None], Y[:, None])
# %% [markdown]
# GPflow's model for fully-Bayesian MCMC is called GPMC. It's constructed like any other model, but contains a parameter `V` which represents the centered values of the function.
# %%
kernel = gpflow.kernels.Matern32() + gpflow.kernels.Constant()
likelihood = gpflow.likelihoods.Exponential()
model = gpflow.models.GPMC(data, kernel, likelihood)
# %% [markdown]
# The `V` parameter already has a prior applied. We'll add priors to the parameters also (these are rather arbitrary, for illustration).
# %%
model.kernel.kernels[0].lengthscales.prior = tfd.Gamma(f64(1.0), f64(1.0))
model.kernel.kernels[0].variance.prior = tfd.Gamma(f64(1.0), f64(1.0))
model.kernel.kernels[1].variance.prior = tfd.Gamma(f64(1.0), f64(1.0))
gpflow.utilities.print_summary(model)
# %% [markdown]
# Running HMC is pretty similar to optimizing a model. GPflow builds on top of [tensorflow_probability's mcmc module](https://www.tensorflow.org/probability/api_docs/python/tfp/mcmc) and provides a SamplingHelper class to make interfacing easier.
# %% [markdown]
# We initialize HMC at the maximum a posteriori parameter values of the model.
# %%
optimizer = gpflow.optimizers.Scipy()
maxiter = ci_niter(3000)
_ = optimizer.minimize(
model.training_loss, model.trainable_variables, options=dict(maxiter=maxiter)
)
# We can now start HMC near maximum a posteriori (MAP)
# %% [markdown]
# We then run the sampler,
# %%
num_burnin_steps = ci_niter(600)
num_samples = ci_niter(1000)
# Note that here we need model.trainable_parameters, not trainable_variables - only parameters can have priors!
hmc_helper = gpflow.optimizers.SamplingHelper(
model.log_posterior_density, model.trainable_parameters
)
hmc = tfp.mcmc.HamiltonianMonteCarlo(
target_log_prob_fn=hmc_helper.target_log_prob_fn, num_leapfrog_steps=10, step_size=0.01
)
adaptive_hmc = tfp.mcmc.SimpleStepSizeAdaptation(
hmc, num_adaptation_steps=10, target_accept_prob=f64(0.75), adaptation_rate=0.1
)
@tf.function
def run_chain_fn():
return tfp.mcmc.sample_chain(
num_results=num_samples,
num_burnin_steps=num_burnin_steps,
current_state=hmc_helper.current_state,
kernel=adaptive_hmc,
trace_fn=lambda _, pkr: pkr.inner_results.is_accepted,
)
samples, _ = run_chain_fn()
# %% [markdown]
# And compute the posterior prediction on a grid for plotting purposes.
# %%
Xtest = np.linspace(-4, 4, 100)[:, None]
f_samples = []
for i in range(num_samples):
# Note that hmc_helper.current_state contains the unconstrained variables
for var, var_samples in zip(hmc_helper.current_state, samples):
var.assign(var_samples[i])
f = model.predict_f_samples(Xtest, 5)
f_samples.append(f)
f_samples = np.vstack(f_samples)
# %%
rate_samples = np.exp(f_samples[:, :, 0])
(line,) = plt.plot(Xtest, np.mean(rate_samples, 0), lw=2)
plt.fill_between(
Xtest[:, 0],
np.percentile(rate_samples, 5, axis=0),
np.percentile(rate_samples, 95, axis=0),
color=line.get_color(),
alpha=0.2,
)
plt.plot(X, Y, "kx", mew=2)
_ = plt.ylim(-0.1, np.max(np.percentile(rate_samples, 95, axis=0)))
# %% [markdown]
# You can also display the sequence of sampled hyperparameters.
# %%
parameter_samples = hmc_helper.convert_to_constrained_values(samples)
param_to_name = {param: name for name, param in gpflow.utilities.parameter_dict(model).items()}
name_to_index = {param_to_name[param]: i for i, param in enumerate(model.trainable_parameters)}
hyperparameters = [
".kernel.kernels[0].lengthscales",
".kernel.kernels[0].variance",
".kernel.kernels[1].variance",
]
plt.figure(figsize=(8, 4))
for param_name in hyperparameters:
plt.plot(parameter_samples[name_to_index[param_name]], label=param_name)
plt.legend(bbox_to_anchor=(1.0, 1.0))
plt.xlabel("HMC iteration")
_ = plt.ylabel("hyperparameter value")
# %% [markdown]
# You can also inspect the marginal of the posterior samples.
# %%
fig, axes = plt.subplots(1, len(hyperparameters), sharex=True, figsize=(12, 4))
for ax, param_name in zip(axes, hyperparameters):
ax.hist(parameter_samples[name_to_index[param_name]], bins=20)
ax.set_title(param_name)
plt.tight_layout()
# %% [markdown]
# ## Prior on constrained and unconstrained parameters
# %% [markdown]
# GPflow's `Parameter` class provides options for setting a prior. `Parameter` wraps a constrained tensor and
# provides computation of the gradient with respect to unconstrained transformation of that tensor.
# The user can set a prior either in **constrained** space or **unconstrained** space.
# %% [markdown]
# By default, the prior for the `Parameter` is set on the _constrained_ space.
# To explicitly set the space on which the prior is defined, use the `prior_on` keyword argument:
# %%
prior_distribution = tfd.Normal(f64(0.0), f64(1.0))
_ = gpflow.Parameter(1.0, prior_on="unconstrained", prior=prior_distribution)
_ = gpflow.Parameter(1.0, prior_on="constrained", prior=prior_distribution)
# %% [markdown]
# `gpflow.optimizers.SamplingHelper` makes sure that the prior density correctly reflects the space in which the prior is defined.
# %% [markdown]
# Below we repeat the same experiment as before, but with some priors defined in the `unconstrained` space.
# We are using the exponential transform to ensure positivity of the kernel parameters (`set_default_positive_bijector("exp")`),
# so a log-normal prior on a constrained parameter corresponds to a normal prior on the unconstrained space:
# %%
gpflow.config.set_default_positive_bijector("exp")
gpflow.config.set_default_positive_minimum(1e-6)
rng = np.random.RandomState(42)
data = synthetic_data(30, rng)
kernel = gpflow.kernels.Matern52(lengthscales=0.3)
meanf = gpflow.mean_functions.Linear(1.0, 0.0)
model = gpflow.models.GPR(data, kernel, meanf)
model.likelihood.variance.assign(0.01)
mu = f64(0.0)
std = f64(4.0)
one = f64(1.0)
model.kernel.lengthscales.prior_on = "unconstrained"
model.kernel.lengthscales.prior = tfd.Normal(mu, std)
model.kernel.variance.prior_on = "unconstrained"
model.kernel.variance.prior = tfd.Normal(mu, std)
model.likelihood.variance.prior_on = "unconstrained"
model.likelihood.variance.prior = tfd.Normal(mu, std)
model.mean_function.A.prior_on = "constrained"
model.mean_function.A.prior = tfd.Normal(mu, std)
model.mean_function.b.prior_on = "constrained"
model.mean_function.b.prior = tfd.Normal(mu, std)
model.kernel.lengthscales.prior_on
# %% [markdown]
# Let's run HMC and plot chain traces:
# %%
num_burnin_steps = ci_niter(300)
num_samples = ci_niter(500)
hmc_helper = gpflow.optimizers.SamplingHelper(
model.log_posterior_density, model.trainable_parameters
)
hmc = tfp.mcmc.HamiltonianMonteCarlo(
target_log_prob_fn=hmc_helper.target_log_prob_fn, num_leapfrog_steps=10, step_size=0.01
)
adaptive_hmc = tfp.mcmc.SimpleStepSizeAdaptation(
hmc, num_adaptation_steps=10, target_accept_prob=f64(0.75), adaptation_rate=0.1
)
@tf.function
def run_chain_fn_unconstrained():
return tfp.mcmc.sample_chain(
num_results=num_samples,
num_burnin_steps=num_burnin_steps,
current_state=hmc_helper.current_state,
kernel=adaptive_hmc,
trace_fn=lambda _, pkr: pkr.inner_results.is_accepted,
)
samples, traces = run_chain_fn_unconstrained()
parameter_samples = hmc_helper.convert_to_constrained_values(samples)
param_to_name = {param: name for name, param in gpflow.utilities.parameter_dict(model).items()}
marginal_samples(samples, model.trainable_parameters, "unconstrained variable samples")
marginal_samples(parameter_samples, model.trainable_parameters, "constrained parameter samples")
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jpmarques19/tensorflwo-test | 0ff8b06e0415075c7269820d080284a42595bb2e | from rl_coach.agents.clipped_ppo_agent import ClippedPPOAgentParameters
from rl_coach.agents.policy_gradients_agent import PolicyGradientsAgentParameters
from rl_coach.graph_managers.basic_rl_graph_manager import BasicRLGraphManager
from rl_coach.graph_managers.graph_manager import ScheduleParameters
from rl_coach.base_parameters import VisualizationParameters, TaskParameters, Frameworks
from rl_coach.utils import short_dynamic_import
from rl_coach.core_types import SelectedPhaseOnlyDumpFilter, MaxDumpFilter, RunPhase
import rl_coach.core_types
from rl_coach import logger
from rl_coach.logger import screen
import argparse
import copy
import logging
import os
import sys
import shutil
import glob
import re
from .configuration_list import ConfigurationList
from rl_coach.coach import CoachLauncher
screen.set_use_colors(False) # Simple text logging so it looks good in CloudWatch
class CoachConfigurationList(ConfigurationList):
"""Helper Object for converting CLI arguments (or SageMaker hyperparameters)
into Coach configuration.
"""
# Being security-paranoid and not instantiating any arbitrary string the customer passes in
ALLOWED_TYPES = {
'Frames': rl_coach.core_types.Frames,
'EnvironmentSteps': rl_coach.core_types.EnvironmentSteps,
'EnvironmentEpisodes': rl_coach.core_types.EnvironmentEpisodes,
'TrainingSteps': rl_coach.core_types.TrainingSteps,
'Time': rl_coach.core_types.Time,
}
class SageMakerCoachPresetLauncher(CoachLauncher):
"""Base class for training RL tasks using RL-Coach.
Customers subclass this to define specific kinds of workloads, overriding these methods as needed.
"""
def __init__(self):
super().__init__()
self.hyperparams = None
def get_config_args(self, parser: argparse.ArgumentParser) -> argparse.Namespace:
"""Overrides the default CLI parsing.
Sets the configuration parameters for what a SageMaker run should do.
Note, this does not support the "play" mode.
"""
# first, convert the parser to a Namespace object with all default values.
empty_arg_list = []
args, _ = parser.parse_known_args(args=empty_arg_list)
parser = self.sagemaker_argparser()
sage_args, unknown = parser.parse_known_args()
# Now fill in the args that we care about.
sagemaker_job_name = os.environ.get("sagemaker_job_name", "sagemaker-experiment")
args.experiment_name = logger.get_experiment_name(sagemaker_job_name)
# Override experiment_path used for outputs
args.experiment_path = '/opt/ml/output/intermediate'
rl_coach.logger.experiment_path = '/opt/ml/output/intermediate' # for gifs
args.checkpoint_save_dir = '/opt/ml/output/data/checkpoint'
args.checkpoint_save_secs = 10 # should avoid hardcoding
# onnx for deployment for mxnet (not tensorflow)
save_model = (sage_args.save_model == 1)
backend = os.getenv('COACH_BACKEND', 'tensorflow')
if save_model and backend == "mxnet":
args.export_onnx_graph = True
args.no_summary = True
args.num_workers = sage_args.num_workers
args.framework = Frameworks[backend]
args.preset = sage_args.RLCOACH_PRESET
# args.apply_stop_condition = True # uncomment for old coach behaviour
self.hyperparameters = CoachConfigurationList()
if len(unknown) % 2 == 1:
raise ValueError("Odd number of command-line arguments specified. Key without value.")
for i in range(0, len(unknown), 2):
name = unknown[i]
if name.startswith("--"):
name = name[2:]
else:
raise ValueError("Unknown command-line argument %s" % name)
val = unknown[i+1]
self.map_hyperparameter(name, val)
return args
def map_hyperparameter(self, name, value):
"""This is a good method to override where customers can specify custom shortcuts
for hyperparameters. Default takes everything starting with "rl." and sends it
straight to the graph manager.
"""
if name.startswith("rl."):
self.apply_hyperparameter(name, value)
else:
raise ValueError("Unknown hyperparameter %s" % name)
def apply_hyperparameter(self, name, value):
"""Save this hyperparameter to be applied to the graph_manager object when
it's ready.
"""
print("Applying RL hyperparameter %s=%s" % (name,value))
self.hyperparameters.store(name, value)
def default_preset_name(self):
"""
Sub-classes will typically return a single hard-coded string.
"""
try:
#TODO: remove this after converting all samples.
default_preset = self.DEFAULT_PRESET
screen.warning("Deprecated configuration of default preset. Please implement default_preset_name()")
return default_preset
except:
pass
raise NotImplementedError("Sub-classes must specify the name of the default preset "+
"for this RL problem. This will be the name of a python "+
"file (without .py) that defines a graph_manager variable")
def sagemaker_argparser(self) -> argparse.ArgumentParser:
"""
Expose only the CLI arguments that make sense in the SageMaker context.
"""
parser = argparse.ArgumentParser()
# Arguably this would be cleaner if we copied the config from the base class argparser.
parser.add_argument('-n', '--num_workers',
help="(int) Number of workers for multi-process based agents, e.g. A3C",
default=1,
type=int)
parser.add_argument('-p', '--RLCOACH_PRESET',
help="(string) Name of the file with the RLCoach preset",
default=self.default_preset_name(),
type=str)
parser.add_argument('--save_model',
help="(int) Flag to save model artifact after training finish",
default=0,
type=int)
return parser
def path_of_main_launcher(self):
"""
A bit of python magic to find the path of the file that launched the current process.
"""
main_mod = sys.modules['__main__']
try:
launcher_file = os.path.abspath(sys.modules['__main__'].__file__)
return os.path.dirname(launcher_file)
except AttributeError:
# If __main__.__file__ is missing, then we're probably in an interactive python shell
return os.getcwd()
def preset_from_name(self, preset_name):
preset_path = self.path_of_main_launcher()
print("Loading preset %s from %s" % (preset_name, preset_path))
preset_path = os.path.join(self.path_of_main_launcher(),preset_name) + '.py:graph_manager'
graph_manager = short_dynamic_import(preset_path, ignore_module_case=True)
return graph_manager
def get_graph_manager_from_args(self, args):
# First get the graph manager for the customer-specified (or default) preset
graph_manager = self.preset_from_name(args.preset)
# Now override whatever config is specified in hyperparameters.
self.hyperparameters.apply_subset(graph_manager, "rl.")
# Set framework
# Note: Some graph managers (e.g. HAC preset) create multiple agents and the attribute is called agents_params
if hasattr(graph_manager, 'agent_params'):
for network_parameters in graph_manager.agent_params.network_wrappers.values():
network_parameters.framework = args.framework
elif hasattr(graph_manager, 'agents_params'):
for ap in graph_manager.agents_params:
for network_parameters in ap.network_wrappers.values():
network_parameters.framework = args.framework
return graph_manager
def _save_tf_model(self):
ckpt_dir = '/opt/ml/output/data/checkpoint'
model_dir = '/opt/ml/model'
import tensorflow as tf # importing tensorflow here so that MXNet docker image is compatible with this file.
# Re-Initialize from the checkpoint so that you will have the latest models up.
tf.train.init_from_checkpoint(ckpt_dir,
{'main_level/agent/online/network_0/': 'main_level/agent/online/network_0'})
tf.train.init_from_checkpoint(ckpt_dir,
{'main_level/agent/online/network_1/': 'main_level/agent/online/network_1'})
# Create a new session with a new tf graph.
sess = tf.Session(config=tf.ConfigProto(allow_soft_placement=True))
sess.run(tf.global_variables_initializer()) # initialize the checkpoint.
# This is the node that will accept the input.
input_nodes = tf.get_default_graph().get_tensor_by_name('main_level/agent/main/online/' + \
'network_0/observation/observation:0')
# This is the node that will produce the output.
output_nodes = tf.get_default_graph().get_operation_by_name('main_level/agent/main/online/' + \
'network_1/ppo_head_0/policy')
# Save the model as a servable model.
tf.saved_model.simple_save(session=sess,
export_dir='model',
inputs={"observation": input_nodes},
outputs={"policy": output_nodes.outputs[0]})
# Move to the appropriate folder. Don't mind the directory, this just works.
# rl-cart-pole is the name of the model. Remember it.
shutil.move('model/', model_dir + '/model/tf-model/00000001/')
# EASE will pick it up and upload to the right path.
print("Success")
def _save_onnx_model(self):
from .onnx_utils import fix_onnx_model
ckpt_dir = '/opt/ml/output/data/checkpoint'
model_dir = '/opt/ml/model'
# find latest onnx file
# currently done by name, expected to be changed in future release of coach.
glob_pattern = os.path.join(ckpt_dir, '*.onnx')
onnx_files = [file for file in glob.iglob(glob_pattern, recursive=True)]
if len(onnx_files) > 0:
extract_step = lambda string: int(re.search('/(\d*)_Step.*', string, re.IGNORECASE).group(1))
onnx_files.sort(key=extract_step)
latest_onnx_file = onnx_files[-1]
# move to model directory
filepath_from = os.path.abspath(latest_onnx_file)
filepath_to = os.path.join(model_dir, "model.onnx")
shutil.move(filepath_from, filepath_to)
fix_onnx_model(filepath_to)
else:
screen.warning("No ONNX files found in {}".format(ckpt_dir))
@classmethod
def train_main(cls):
"""Entrypoint for training.
Parses command-line arguments and starts training.
"""
trainer = cls()
trainer.launch()
# Create model artifact for model.tar.gz
parser = trainer.sagemaker_argparser()
sage_args, unknown = parser.parse_known_args()
if sage_args.save_model == 1:
backend = os.getenv('COACH_BACKEND', 'tensorflow')
if backend == 'tensorflow':
trainer._save_tf_model()
if backend == 'mxnet':
trainer._save_onnx_model()
class SageMakerCoachLauncher(SageMakerCoachPresetLauncher):
"""
Older version of the launcher that doesn't use preset, but instead effectively has a single preset built in.
"""
def __init__(self):
super().__init__()
screen.warning("DEPRECATION WARNING: Please switch to SageMakerCoachPresetLauncher")
#TODO: Remove this whole class when nobody's using it any more.
def define_environment(self):
return NotImplementedEror("Sub-class must define environment e.g. GymVectorEnvironment(level='your_module:YourClass')")
def get_graph_manager_from_args(self, args):
"""Returns the GraphManager object for coach to use to train by calling improve()
"""
# NOTE: TaskParameters are not configurable at this time.
# Visualization
vis_params = VisualizationParameters()
self.config_visualization(vis_params)
self.hyperparameters.apply_subset(vis_params, "vis_params.")
# Schedule
schedule_params = ScheduleParameters()
self.config_schedule(schedule_params)
self.hyperparameters.apply_subset(schedule_params, "schedule_params.")
# Agent
agent_params = self.define_agent()
self.hyperparameters.apply_subset(agent_params, "agent_params.")
# Environment
env_params = self.define_environment()
self.hyperparameters.apply_subset(env_params, "env_params.")
graph_manager = BasicRLGraphManager(
agent_params=agent_params,
env_params=env_params,
schedule_params=schedule_params,
vis_params=vis_params,
)
return graph_manager
def config_schedule(self, schedule_params):
pass
def define_agent(self):
raise NotImplementedError("Subclass must create define_agent() method which returns an AgentParameters object. e.g.\n" \
" return rl_coach.agents.dqn_agent.DQNAgentParameters()");
def config_visualization(self, vis_params):
vis_params.dump_gifs = True
vis_params.video_dump_methods = [SelectedPhaseOnlyDumpFilter(RunPhase.TEST), MaxDumpFilter()]
vis_params.print_networks_summary = True
return vis_params
| [
"tensorflow.saved_model.simple_save",
"tensorflow.train.init_from_checkpoint",
"tensorflow.ConfigProto",
"tensorflow.global_variables_initializer",
"tensorflow.get_default_graph"
] | reinforcement_learning/common/sagemaker_rl/coach_launcher.py | [(23, 'rl_coach.logger.screen.set_use_colors', 'screen.set_use_colors', (['(False)'], {}), False, 'from rl_coach.logger import screen\n'), (63, 'os.environ.get', 'os.environ.get', (['"""sagemaker_job_name"""', '"""sagemaker-experiment"""'], {}), False, 'import os\n'), (64, 'rl_coach.logger.get_experiment_name', 'logger.get_experiment_name', (['sagemaker_job_name'], {}), False, 'from rl_coach import logger\n'), (74, 'os.getenv', 'os.getenv', (['"""COACH_BACKEND"""', '"""tensorflow"""'], {}), False, 'import os\n'), (138, 'argparse.ArgumentParser', 'argparse.ArgumentParser', ([], {}), False, 'import argparse\n'), (171, 'rl_coach.utils.short_dynamic_import', 'short_dynamic_import', (['preset_path'], {'ignore_module_case': '(True)'}), False, 'from rl_coach.utils import short_dynamic_import\n'), (196, 'tensorflow.train.init_from_checkpoint', 'tf.train.init_from_checkpoint', (['ckpt_dir', "{'main_level/agent/online/network_0/': 'main_level/agent/online/network_0'}"], {}), True, 'import tensorflow as tf\n'), (198, 'tensorflow.train.init_from_checkpoint', 'tf.train.init_from_checkpoint', (['ckpt_dir', "{'main_level/agent/online/network_1/': 'main_level/agent/online/network_1'}"], {}), True, 'import tensorflow as tf\n'), (212, 'tensorflow.saved_model.simple_save', 'tf.saved_model.simple_save', ([], {'session': 'sess', 'export_dir': '"""model"""', 'inputs': "{'observation': input_nodes}", 'outputs': "{'policy': output_nodes.outputs[0]}"}), True, 'import tensorflow as tf\n'), (218, 'shutil.move', 'shutil.move', (['"""model/"""', "(model_dir + '/model/tf-model/00000001/')"], {}), False, 'import shutil\n'), (228, 'os.path.join', 'os.path.join', (['ckpt_dir', '"""*.onnx"""'], {}), False, 'import os\n'), (268, 'rl_coach.logger.screen.warning', 'screen.warning', (['"""DEPRECATION WARNING: Please switch to SageMakerCoachPresetLauncher"""'], {}), False, 'from rl_coach.logger import screen\n'), (280, 'rl_coach.base_parameters.VisualizationParameters', 'VisualizationParameters', ([], {}), False, 'from rl_coach.base_parameters import VisualizationParameters, TaskParameters, Frameworks\n'), (285, 'rl_coach.graph_managers.graph_manager.ScheduleParameters', 'ScheduleParameters', ([], {}), False, 'from rl_coach.graph_managers.graph_manager import ScheduleParameters\n'), (297, 'rl_coach.graph_managers.basic_rl_graph_manager.BasicRLGraphManager', 'BasicRLGraphManager', ([], {'agent_params': 'agent_params', 'env_params': 'env_params', 'schedule_params': 'schedule_params', 'vis_params': 'vis_params'}), False, 'from rl_coach.graph_managers.basic_rl_graph_manager import BasicRLGraphManager\n'), (126, 'rl_coach.logger.screen.warning', 'screen.warning', (['"""Deprecated configuration of default preset. Please implement default_preset_name()"""'], {}), False, 'from rl_coach.logger import screen\n'), (161, 'os.path.abspath', 'os.path.abspath', (["sys.modules['__main__'].__file__"], {}), False, 'import os\n'), (162, 'os.path.dirname', 'os.path.dirname', (['launcher_file'], {}), False, 'import os\n'), (203, 'tensorflow.global_variables_initializer', 'tf.global_variables_initializer', ([], {}), True, 'import tensorflow as tf\n'), (235, 'os.path.abspath', 'os.path.abspath', (['latest_onnx_file'], {}), False, 'import os\n'), (236, 'os.path.join', 'os.path.join', (['model_dir', '"""model.onnx"""'], {}), False, 'import os\n'), (237, 'shutil.move', 'shutil.move', (['filepath_from', 'filepath_to'], {}), False, 'import shutil\n'), (254, 'os.getenv', 'os.getenv', (['"""COACH_BACKEND"""', '"""tensorflow"""'], {}), False, 'import os\n'), (315, 'rl_coach.core_types.SelectedPhaseOnlyDumpFilter', 'SelectedPhaseOnlyDumpFilter', (['RunPhase.TEST'], {}), False, 'from rl_coach.core_types import SelectedPhaseOnlyDumpFilter, MaxDumpFilter, RunPhase\n'), (315, 'rl_coach.core_types.MaxDumpFilter', 'MaxDumpFilter', ([], {}), False, 'from rl_coach.core_types import SelectedPhaseOnlyDumpFilter, MaxDumpFilter, RunPhase\n'), (165, 'os.getcwd', 'os.getcwd', ([], {}), False, 'import os\n'), (202, 'tensorflow.ConfigProto', 'tf.ConfigProto', ([], {'allow_soft_placement': '(True)'}), True, 'import tensorflow as tf\n'), (206, 'tensorflow.get_default_graph', 'tf.get_default_graph', ([], {}), True, 'import tensorflow as tf\n'), (209, 'tensorflow.get_default_graph', 'tf.get_default_graph', ([], {}), True, 'import tensorflow as tf\n'), (229, 'glob.iglob', 'glob.iglob', (['glob_pattern'], {'recursive': '(True)'}), False, 'import glob\n'), (231, 're.search', 're.search', (['"""/(\\\\d*)_Step.*"""', 'string', 're.IGNORECASE'], {}), False, 'import re\n')] |
BeyonderXX/tensorflow-serving-java | e8cbb502c8fb1b00da9b0ea8115847931e8129f1 | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
BERT finetuning runner.
Implement base on run_classifier.py
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import collections
import csv
import os
import pandas as pd
from bert import optimization, modeling, tokenization
import tensorflow as tf
flags = tf.flags
FLAGS = flags.FLAGS
current_dir = os.getcwd()
# Add by wangxiao
flags.DEFINE_bool("do_export", True, "Whether to export the model_bak.")
flags.DEFINE_string("export_dir", os.path.join(current_dir, "./model/bert/pb/"),
"The dir where the exported savedModel will be written.")
# Required parameters
flags.DEFINE_string(
"data_dir", os.path.join(current_dir, "./data/"),
"The input data dir. Should contain the .tsv files (or other data files) "
"for the task.")
init_model_dir = os.path.join(current_dir, "./bert/chinese_L-12_H-768_A-12/")
flags.DEFINE_string(
"bert_config_file", os.path.join(init_model_dir, "./bert_config.json"),
"The config json file corresponding to the pre-trained BERT model_bak. "
"This specifies the model_bak architecture.")
flags.DEFINE_string("task_name", "sim", "The name of the task to train.")
flags.DEFINE_string("vocab_file", os.path.join(init_model_dir, "vocab.txt"),
"The vocabulary file that the BERT model_bak was trained on.")
flags.DEFINE_string(
"output_dir", os.path.join(current_dir, "./model/bert/ckpt/"),
"The output directory where the model checkpoints will be written.")
## Other parameters
flags.DEFINE_string(
"init_checkpoint", os.path.join(init_model_dir, "bert_model.ckpt"),
"Initial checkpoint (usually from a pre-trained BERT model_bak).")
flags.DEFINE_bool(
"do_lower_case", True,
"Whether to lower case the input text. Should be True for uncased "
"models and False for cased models.")
flags.DEFINE_integer(
"max_seq_length", 50,
"The maximum total input sequence length after WordPiece tokenization. "
"Sequences longer than this will be truncated, and sequences shorter "
"than this will be padded.")
flags.DEFINE_bool("do_train", True, "Whether to run training.")
flags.DEFINE_bool("do_eval", False, "Whether to run eval on the dev set.")
flags.DEFINE_bool(
"do_predict", False,
"Whether to run the model_bak in inference mode on the test set.")
flags.DEFINE_integer("train_batch_size", 4, "Total batch size for training.")
flags.DEFINE_integer("eval_batch_size", 1, "Total batch size for eval.")
flags.DEFINE_integer("predict_batch_size", 4, "Total batch size for predict.")
flags.DEFINE_float("learning_rate", 5e-5, "The initial learning rate for Adam.")
flags.DEFINE_float("num_train_epochs", 1.0,
"Total number of training epochs to perform.")
flags.DEFINE_float(
"warmup_proportion", 0.1,
"Proportion of training to perform linear learning rate warmup for. "
"E.g., 0.1 = 10% of training.")
flags.DEFINE_integer("save_checkpoints_steps", 1,
"How often to save the model_bak checkpoint.")
flags.DEFINE_integer("iterations_per_loop", 1,
"How many steps to make in each estimator call.")
flags.DEFINE_bool("use_tpu", False, "Whether to use TPU or GPU/CPU.")
tf.flags.DEFINE_string(
"tpu_name", None,
"The Cloud TPU to use for training. This should be either the name "
"used when creating the Cloud TPU, or a grpc://ip.address.of.tpu:8470 "
"url.")
tf.flags.DEFINE_string(
"tpu_zone", None,
"[Optional] GCE zone where the Cloud TPU is located in. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string(
"gcp_project", None,
"[Optional] Project name for the Cloud TPU-enabled project. If not "
"specified, we will attempt to automatically detect the GCE project from "
"metadata.")
tf.flags.DEFINE_string("master", None, "[Optional] TensorFlow master URL.")
flags.DEFINE_integer(
"num_tpu_cores", 8,
"Only used if `use_tpu` is True. Total number of TPU cores to use.")
class InputExample(object):
"""A single training/test example for simple sequence classification."""
def __init__(self, guid, text_a, text_b=None, label=None):
"""Constructs a InputExample.
Args:
guid: Unique id for the example.
text_a: string. The untokenized text of the first sequence. For single
sequence tasks, only this sequence must be specified.
text_b: (Optional) string. The untokenized text of the second sequence.
Only must be specified for sequence pair tasks.
label: (Optional) string. The label of the example. This should be
specified for train and dev examples, but not for test examples.
"""
self.guid = guid
self.text_a = text_a
self.text_b = text_b
self.label = label
class PaddingInputExample(object):
"""Fake example so the num input examples is a multiple of the batch size.
When running eval/predict on the TPU, we need to pad the number of examples
to be a multiple of the batch size, because the TPU requires a fixed batch
size. The alternative is to drop the last batch, which is bad because it means
the entire output data won't be generated.
We use this class instead of `None` because treating `None` as padding
battches could cause silent errors.
"""
class InputFeatures(object):
"""A single set of features of data."""
def __init__(self,
input_ids,
input_mask,
segment_ids,
label_id,
is_real_example=True):
self.input_ids = input_ids
self.input_mask = input_mask
self.segment_ids = segment_ids
self.label_id = label_id
self.is_real_example = is_real_example
class DataProcessor(object):
"""Base class for data converters for sequence classification data sets."""
def get_train_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the train set."""
raise NotImplementedError()
def get_dev_examples(self, data_dir):
"""Gets a collection of `InputExample`s for the dev set."""
raise NotImplementedError()
def get_test_examples(self, data_dir):
"""Gets a collection of `InputExample`s for prediction."""
raise NotImplementedError()
def get_labels(self):
"""Gets the list of labels for this data set."""
raise NotImplementedError()
@classmethod
def _read_tsv(cls, input_file, quotechar=None):
"""Reads a tab separated value file."""
with tf.gfile.Open(input_file, "r") as f:
reader = csv.reader(f, delimiter="\t", quotechar=quotechar)
lines = []
for line in reader:
lines.append(line)
return lines
class XnliProcessor(DataProcessor):
"""Processor for the XNLI data set."""
def __init__(self):
self.language = "zh"
def get_train_examples(self, data_dir):
"""See base class."""
lines = self._read_tsv(
os.path.join(data_dir, "multinli",
"multinli.train.%s.tsv" % self.language))
examples = []
for (i, line) in enumerate(lines):
if i == 0:
continue
guid = "train-%d" % (i)
text_a = tokenization.convert_to_unicode(line[0])
text_b = tokenization.convert_to_unicode(line[1])
label = tokenization.convert_to_unicode(line[2])
if label == tokenization.convert_to_unicode("contradictory"):
label = tokenization.convert_to_unicode("contradiction")
examples.append(
InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
return examples
def get_dev_examples(self, data_dir):
"""See base class."""
lines = self._read_tsv(os.path.join(data_dir, "xnli.dev.tsv"))
examples = []
for (i, line) in enumerate(lines):
if i == 0:
continue
guid = "dev-%d" % (i)
language = tokenization.convert_to_unicode(line[0])
if language != tokenization.convert_to_unicode(self.language):
continue
text_a = tokenization.convert_to_unicode(line[6])
text_b = tokenization.convert_to_unicode(line[7])
label = tokenization.convert_to_unicode(line[1])
examples.append(
InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
return examples
def get_labels(self):
"""See base class."""
return ["contradiction", "entailment", "neutral"]
class MnliProcessor(DataProcessor):
"""Processor for the MultiNLI data set (GLUE version)."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "dev_matched.tsv")),
"dev_matched")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "test_matched.tsv")), "test")
def get_labels(self):
"""See base class."""
return ["contradiction", "entailment", "neutral"]
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
if i == 0:
continue
guid = "%s-%s" % (set_type, tokenization.convert_to_unicode(line[0]))
text_a = tokenization.convert_to_unicode(line[8])
text_b = tokenization.convert_to_unicode(line[9])
if set_type == "test":
label = "contradiction"
else:
label = tokenization.convert_to_unicode(line[-1])
examples.append(
InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
return examples
class MrpcProcessor(DataProcessor):
"""Processor for the MRPC data set (GLUE version)."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")
def get_labels(self):
"""See base class."""
return ["0", "1"]
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
if i == 0:
continue
guid = "%s-%s" % (set_type, i)
text_a = tokenization.convert_to_unicode(line[3])
text_b = tokenization.convert_to_unicode(line[4])
if set_type == "test":
label = "0"
else:
label = tokenization.convert_to_unicode(line[0])
examples.append(
InputExample(guid=guid, text_a=text_a, text_b=text_b, label=label))
return examples
class SimProcessor(DataProcessor):
"""Processor for the Sim task"""
# read csv
# def get_train_examples(self, data_dir):
# file_path = os.path.join(data_dir, 'train_origin.csv')
# train_df = pd.read_csv(file_path, encoding='utf-8')
# train_data = []
# for index, train in enumerate(train_df.values):
# guid = 'train-%d' % index
# text_a = tokenization.convert_to_unicode(str(train[0]))
# # text_b = tokenization.convert_to_unicode(str(train[1]))
# label = str(train[1])
# train_data.append(InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
# return train_data
# read txt
#返回InputExample类组成的list
#text_a是一串字符串，text_b则是另一串字符串。在进行后续输入处理后(BERT代码中已包含，不需要自己完成)
# text_a和text_b将组合成[CLS] text_a [SEP] text_b [SEP]的形式传入模型
def get_train_examples(self, data_dir):
file_path = os.path.join(data_dir, 'train_sentiment.txt')
f = open(file_path, 'r')
train_data = []
index = 0
for line in f.readlines():
guid = 'train-%d' % index#参数guid是用来区分每个example的
line = line.replace("\n", "").split("\t")
text_a = tokenization.convert_to_unicode(str(line[1]))#要分类的文本
label = str(line[2])#文本对应的情感类别
train_data.append(InputExample(guid=guid, text_a=text_a, text_b=None, label=label))#加入到InputExample列表中
index += 1
return train_data
# csv
# def get_dev_examples(self, data_dir):
# file_path = os.path.join(data_dir, 'dev.csv')
# dev_df = pd.read_csv(file_path, encoding='utf-8')
# dev_data = []
# for index, dev in enumerate(dev_df.values):
# guid = 'dev-%d' % index
# text_a = tokenization.convert_to_unicode(str(dev[0]))
# # text_b = tokenization.convert_to_unicode(str(dev[1]))
# label = str(dev[1])
# dev_data.append(InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
# return dev_data
def get_dev_examples(self, data_dir):
file_path = os.path.join(data_dir, 'test_sentiment_origin.txt')
f = open(file_path, 'r')
dev_data = []
index = 0
for line in f.readlines():
guid = 'dev-%d' % index
line = line.replace("\n", "").split("\t")
text_a = tokenization.convert_to_unicode(str(line[1]))
label = str(line[2])
dev_data.append(InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
index += 1
return dev_data
def get_test_examples(self, data_dir):
file_path = os.path.join(data_dir, 'test.csv')
test_df = pd.read_csv(file_path, encoding='utf-8')
test_data = []
for index, test in enumerate(test_df.values):
guid = 'test-%d' % index
text_a = tokenization.convert_to_unicode(str(test[0]))
# text_b = tokenization.convert_to_unicode(str(test[1]))
label = str(test[1])
test_data.append(InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
return test_data
def get_labels(self):
return ['0', '1', '2']
class ColaProcessor(DataProcessor):
"""Processor for the CoLA data set (GLUE version)."""
def get_train_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "train.tsv")), "train")
def get_dev_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "dev.tsv")), "dev")
def get_test_examples(self, data_dir):
"""See base class."""
return self._create_examples(
self._read_tsv(os.path.join(data_dir, "test.tsv")), "test")
def get_labels(self):
"""See base class."""
return ["0", "1"]
def _create_examples(self, lines, set_type):
"""Creates examples for the training and dev sets."""
examples = []
for (i, line) in enumerate(lines):
# Only the test set has a header
if set_type == "test" and i == 0:
continue
guid = "%s-%s" % (set_type, i)
if set_type == "test":
text_a = tokenization.convert_to_unicode(line[1])
label = "0"
else:
text_a = tokenization.convert_to_unicode(line[3])
label = tokenization.convert_to_unicode(line[1])
examples.append(
InputExample(guid=guid, text_a=text_a, text_b=None, label=label))
return examples
def convert_single_example(ex_index, example, label_list, max_seq_length,
tokenizer):
"""Converts a single `InputExample` into a single `InputFeatures`."""
if isinstance(example, PaddingInputExample):
return InputFeatures(
input_ids=[0] * max_seq_length,
input_mask=[0] * max_seq_length,
segment_ids=[0] * max_seq_length,
label_id=0,
is_real_example=False)
label_map = {}
for (i, label) in enumerate(label_list):
label_map[label] = i
tokens_a = tokenizer.tokenize(example.text_a)
tokens_b = None
if example.text_b:
tokens_b = tokenizer.tokenize(example.text_b)
if tokens_b:
# Modifies `tokens_a` and `tokens_b` in place so that the total
# length is less than the specified length.
# Account for [CLS], [SEP], [SEP] with "- 3"
_truncate_seq_pair(tokens_a, tokens_b, max_seq_length - 3)
else:
# Account for [CLS] and [SEP] with "- 2"
if len(tokens_a) > max_seq_length - 2:
tokens_a = tokens_a[0:(max_seq_length - 2)]
# The convention in BERT is:
# (a) For sequence pairs:
# tokens: [CLS] is this jack ##son ##ville ? [SEP] no it is not . [SEP]
# type_ids: 0 0 0 0 0 0 0 0 1 1 1 1 1 1
# (b) For single sequences:
# tokens: [CLS] the dog is hairy . [SEP]
# type_ids: 0 0 0 0 0 0 0
#
# Where "type_ids" are used to indicate whether this is the first
# sequence or the second sequence. The embedding vectors for `type=0` and
# `type=1` were learned during pre-training and are added to the wordpiece
# embedding vector (and position vector). This is not *strictly* necessary
# since the [SEP] token unambiguously separates the sequences, but it makes
# it easier for the model_bak to learn the concept of sequences.
#
# For classification tasks, the first vector (corresponding to [CLS]) is
# used as the "sentence vector". Note that this only makes sense because
# the entire model_bak is fine-tuned.
tokens = []
segment_ids = []
tokens.append("[CLS]")
segment_ids.append(0)
for token in tokens_a:
tokens.append(token)
segment_ids.append(0)
tokens.append("[SEP]")
segment_ids.append(0)
if tokens_b:
for token in tokens_b:
tokens.append(token)
segment_ids.append(1)
tokens.append("[SEP]")
segment_ids.append(1)
input_ids = tokenizer.convert_tokens_to_ids(tokens)
# The mask has 1 for real tokens and 0 for padding tokens. Only real
# tokens are attended to.
input_mask = [1] * len(input_ids)
# Zero-pad up to the sequence length.
while len(input_ids) < max_seq_length:
input_ids.append(0)
input_mask.append(0)
segment_ids.append(0)
assert len(input_ids) == max_seq_length
assert len(input_mask) == max_seq_length
assert len(segment_ids) == max_seq_length
label_id = label_map[example.label]
if ex_index < 5:
tf.logging.info("*** Example ***")
tf.logging.info("guid: %s" % (example.guid))
tf.logging.info("tokens: %s" % " ".join(
[tokenization.printable_text(x) for x in tokens]))
tf.logging.info("input_ids: %s" % " ".join([str(x) for x in input_ids]))
tf.logging.info("input_mask: %s" % " ".join([str(x) for x in input_mask]))
tf.logging.info("segment_ids: %s" % " ".join([str(x) for x in segment_ids]))
tf.logging.info("label: %s (id = %d)" % (example.label, label_id))
feature = InputFeatures(
input_ids=input_ids,
input_mask=input_mask,
segment_ids=segment_ids,
label_id=label_id,
is_real_example=True)
return feature
def file_based_convert_examples_to_features(
examples, label_list, max_seq_length, tokenizer, output_file):
"""Convert a set of `InputExample`s to a TFRecord file."""
writer = tf.python_io.TFRecordWriter(output_file)
for (ex_index, example) in enumerate(examples):
if ex_index % 10000 == 0:
tf.logging.info("Writing example %d of %d" % (ex_index, len(examples)))
feature = convert_single_example(ex_index, example, label_list,
max_seq_length, tokenizer)
def create_int_feature(values):
f = tf.train.Feature(int64_list=tf.train.Int64List(value=list(values)))
return f
features = collections.OrderedDict()
features["input_ids"] = create_int_feature(feature.input_ids)
features["input_mask"] = create_int_feature(feature.input_mask)
features["segment_ids"] = create_int_feature(feature.segment_ids)
features["label_ids"] = create_int_feature([feature.label_id])
features["is_real_example"] = create_int_feature(
[int(feature.is_real_example)])
tf_example = tf.train.Example(features=tf.train.Features(feature=features))
writer.write(tf_example.SerializeToString())
writer.close()
def file_based_input_fn_builder(input_file, seq_length, is_training,
drop_remainder):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
name_to_features = {
"input_ids": tf.FixedLenFeature([seq_length], tf.int64),
"input_mask": tf.FixedLenFeature([seq_length], tf.int64),
"segment_ids": tf.FixedLenFeature([seq_length], tf.int64),
"label_ids": tf.FixedLenFeature([], tf.int64),
"is_real_example": tf.FixedLenFeature([], tf.int64),
}
def _decode_record(record, name_to_features):
"""Decodes a record to a TensorFlow example."""
example = tf.parse_single_example(record, name_to_features)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name in list(example.keys()):
t = example[name]
if t.dtype == tf.int64:
t = tf.to_int32(t)
example[name] = t
return example
def input_fn(params):
"""The actual input function."""
batch_size = params["batch_size"]
# For training, we want a lot of parallel reading and shuffling.
# For eval, we want no shuffling and parallel reading doesn't matter.
d = tf.data.TFRecordDataset(input_file)
if is_training:
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.apply(
tf.data.experimental.map_and_batch(
lambda record: _decode_record(record, name_to_features),
batch_size=batch_size,
drop_remainder=drop_remainder))
return d
return input_fn
def _truncate_seq_pair(tokens_a, tokens_b, max_length):
"""Truncates a sequence pair in place to the maximum length."""
# This is a simple heuristic which will always truncate the longer sequence
# one token at a time. This makes more sense than truncating an equal percent
# of tokens from each, since if one sequence is very short then each token
# that's truncated likely contains more information than a longer sequence.
while True:
total_length = len(tokens_a) + len(tokens_b)
if total_length <= max_length:
break
if len(tokens_a) > len(tokens_b):
tokens_a.pop()
else:
tokens_b.pop()
def create_model(bert_config, is_training, input_ids, input_mask, segment_ids,
labels, num_labels, use_one_hot_embeddings):
"""Creates a classification model_bak."""
model = modeling.BertModel(
config=bert_config,
is_training=is_training,
input_ids=input_ids,
input_mask=input_mask,
token_type_ids=segment_ids,
use_one_hot_embeddings=use_one_hot_embeddings)
# In the demo, we are doing a simple classification task on the entire
# segment.
#
# If you want to use the token-level output, use model_bak.get_sequence_output()
# instead.
output_layer = model.get_pooled_output()
hidden_size = output_layer.shape[-1].value
output_weights = tf.get_variable(
"output_weights", [num_labels, hidden_size],
initializer=tf.truncated_normal_initializer(stddev=0.02))
output_bias = tf.get_variable(
"output_bias", [num_labels], initializer=tf.zeros_initializer())
with tf.variable_scope("loss"):
if is_training:
# I.e., 0.1 dropout
output_layer = tf.nn.dropout(output_layer, keep_prob=0.9)
logits = tf.matmul(output_layer, output_weights, transpose_b=True)
logits = tf.nn.bias_add(logits, output_bias)
probabilities = tf.nn.softmax(logits, axis=-1)
log_probs = tf.nn.log_softmax(logits, axis=-1)
one_hot_labels = tf.one_hot(labels, depth=num_labels, dtype=tf.float32)
per_example_loss = -tf.reduce_sum(one_hot_labels * log_probs, axis=-1)
loss = tf.reduce_mean(per_example_loss)
return (loss, per_example_loss, logits, probabilities)
def model_fn_builder(bert_config, num_labels, init_checkpoint, learning_rate,
num_train_steps, num_warmup_steps, use_tpu,
use_one_hot_embeddings):
"""Returns `model_fn` closure for TPUEstimator."""
def model_fn(features, labels, mode, params): # pylint: disable=unused-argument
"""The `model_fn` for TPUEstimator."""
tf.logging.info("*** Features ***")
for name in sorted(features.keys()):
tf.logging.info(" name = %s, shape = %s" % (name, features[name].shape))
input_ids = features["input_ids"]
input_mask = features["input_mask"]
segment_ids = features["segment_ids"]
label_ids = features["label_ids"]
is_real_example = None
if "is_real_example" in features:
is_real_example = tf.cast(features["is_real_example"], dtype=tf.float32)
else:
is_real_example = tf.ones(tf.shape(label_ids), dtype=tf.float32)
is_training = (mode == tf.estimator.ModeKeys.TRAIN)
(total_loss, per_example_loss, logits, probabilities) = create_model(
bert_config, is_training, input_ids, input_mask, segment_ids, label_ids,
num_labels, use_one_hot_embeddings)
tvars = tf.trainable_variables()
initialized_variable_names = {}
scaffold_fn = None
if init_checkpoint:
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
if use_tpu:
def tpu_scaffold():
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
return tf.train.Scaffold()
scaffold_fn = tpu_scaffold
else:
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
tf.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
tf.logging.info(" name = %s, shape = %s%s", var.name, var.shape,
init_string)
output_spec = None
if mode == tf.estimator.ModeKeys.TRAIN:
train_op = optimization.create_optimizer(
total_loss, learning_rate, num_train_steps, num_warmup_steps, use_tpu)
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op,
scaffold_fn=scaffold_fn)
elif mode == tf.estimator.ModeKeys.EVAL:
def metric_fn(per_example_loss, label_ids, logits, is_real_example):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
accuracy = tf.metrics.accuracy(
labels=label_ids, predictions=predictions, weights=is_real_example)
loss = tf.metrics.mean(values=per_example_loss, weights=is_real_example)
return {
"eval_accuracy": accuracy,
"eval_loss": loss,
}
eval_metrics = (metric_fn,
[per_example_loss, label_ids, logits, is_real_example])
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
loss=total_loss,
eval_metrics=eval_metrics,
scaffold_fn=scaffold_fn)
else:
# The code to modify out_put nodes
output_spec = tf.contrib.tpu.TPUEstimatorSpec(
mode=mode,
predictions={"probabilities": probabilities},
scaffold_fn=scaffold_fn)
return output_spec
return model_fn
# This function is not used by this file but is still used by the Colab and
# people who depend on it.
def input_fn_builder(features, seq_length, is_training, drop_remainder):
"""Creates an `input_fn` closure to be passed to TPUEstimator."""
all_input_ids = []
all_input_mask = []
all_segment_ids = []
all_label_ids = []
for feature in features:
all_input_ids.append(feature.input_ids)
all_input_mask.append(feature.input_mask)
all_segment_ids.append(feature.segment_ids)
all_label_ids.append(feature.label_id)
def input_fn(params):
"""The actual input function."""
batch_size = params["batch_size"]
num_examples = len(features)
# This is for demo purposes and does NOT scale to large data sets. We do
# not use Dataset.from_generator() because that uses tf.py_func which is
# not TPU compatible. The right way to load data is with TFRecordReader.
d = tf.data.Dataset.from_tensor_slices({
"input_ids":
tf.constant(
all_input_ids, shape=[num_examples, seq_length],
dtype=tf.int32),
"input_mask":
tf.constant(
all_input_mask,
shape=[num_examples, seq_length],
dtype=tf.int32),
"segment_ids":
tf.constant(
all_segment_ids,
shape=[num_examples, seq_length],
dtype=tf.int32),
"label_ids":
tf.constant(all_label_ids, shape=[num_examples], dtype=tf.int32),
})
if is_training:
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.batch(batch_size=batch_size, drop_remainder=drop_remainder)
return d
return input_fn
# This function is not used by this file but is still used by the Colab and
# people who depend on it.
def convert_examples_to_features(examples, label_list, max_seq_length,
tokenizer):
"""Convert a set of `InputExample`s to a list of `InputFeatures`."""
features = []
for (ex_index, example) in enumerate(examples):
if ex_index % 10000 == 0:
tf.logging.info("Writing example %d of %d" % (ex_index, len(examples)))
feature = convert_single_example(ex_index, example, label_list,
max_seq_length, tokenizer)
features.append(feature)
return features
# add by wangxiao
# define the inputs of signature
def serving_input_fn():
label_ids = tf.placeholder(tf.int32, [None], name='label_ids')
input_ids = tf.placeholder(tf.int32, [None, FLAGS.max_seq_length], name='input_ids')
input_mask = tf.placeholder(tf.int32, [None, FLAGS.max_seq_length], name='input_mask')
segment_ids = tf.placeholder(tf.int32, [None, FLAGS.max_seq_length], name='segment_ids')
input_fn = tf.estimator.export.build_raw_serving_input_receiver_fn({
'label_ids': label_ids,
'input_ids': input_ids,
'input_mask': input_mask,
'segment_ids': segment_ids,
})()
return input_fn
def main(_):
tf.logging.set_verbosity(tf.logging.INFO)
processors = {
"cola": ColaProcessor,
"mnli": MnliProcessor,
"mrpc": MrpcProcessor,
"xnli": XnliProcessor,
"sim": SimProcessor
}
tokenization.validate_case_matches_checkpoint(FLAGS.do_lower_case,
FLAGS.init_checkpoint)
if not FLAGS.do_train and not FLAGS.do_eval and not FLAGS.do_predict:
raise ValueError(
"At least one of `do_train`, `do_eval` or `do_predict' must be True.")
bert_config = modeling.BertConfig.from_json_file(FLAGS.bert_config_file)
if FLAGS.max_seq_length > bert_config.max_position_embeddings:
raise ValueError(
"Cannot use sequence length %d because the BERT model_bak "
"was only trained up to sequence length %d" %
(FLAGS.max_seq_length, bert_config.max_position_embeddings))
tf.gfile.MakeDirs(FLAGS.output_dir)
task_name = FLAGS.task_name.lower()
if task_name not in processors:
raise ValueError("Task not found: %s" % (task_name))
processor = processors[task_name]()
label_list = processor.get_labels()
tokenizer = tokenization.FullTokenizer(
vocab_file=FLAGS.vocab_file, do_lower_case=FLAGS.do_lower_case)
tpu_cluster_resolver = None
if FLAGS.use_tpu and FLAGS.tpu_name:
tpu_cluster_resolver = tf.distribute.cluster_resolver.TPUClusterResolver(
FLAGS.tpu_name, zone=FLAGS.tpu_zone, project=FLAGS.gcp_project)
is_per_host = tf.contrib.tpu.InputPipelineConfig.PER_HOST_V2
run_config = tf.contrib.tpu.RunConfig(
cluster=tpu_cluster_resolver,
master=FLAGS.master,
model_dir=FLAGS.output_dir,
save_checkpoints_steps=FLAGS.save_checkpoints_steps,
tpu_config=tf.contrib.tpu.TPUConfig(
iterations_per_loop=FLAGS.iterations_per_loop,
num_shards=FLAGS.num_tpu_cores,
per_host_input_for_training=is_per_host))
train_examples = None
num_train_steps = None
num_warmup_steps = None
if FLAGS.do_train:
train_examples = processor.get_train_examples(FLAGS.data_dir)
num_train_steps = int(
len(train_examples) / FLAGS.train_batch_size * FLAGS.num_train_epochs)
num_warmup_steps = int(num_train_steps * FLAGS.warmup_proportion)
model_fn = model_fn_builder(
bert_config=bert_config,
num_labels=len(label_list),
init_checkpoint=FLAGS.init_checkpoint,
learning_rate=FLAGS.learning_rate,
num_train_steps=num_train_steps,
num_warmup_steps=num_warmup_steps,
use_tpu=FLAGS.use_tpu,
use_one_hot_embeddings=FLAGS.use_tpu)
# If TPU is not available, this will fall back to normal Estimator on CPU
# or GPU.
estimator = tf.contrib.tpu.TPUEstimator(
use_tpu=FLAGS.use_tpu,
model_fn=model_fn,
config=run_config,
train_batch_size=FLAGS.train_batch_size,
eval_batch_size=FLAGS.eval_batch_size,
predict_batch_size=FLAGS.predict_batch_size)
if FLAGS.do_train:
train_file = os.path.join(FLAGS.output_dir, "train.tf_record")
file_based_convert_examples_to_features(
train_examples, label_list, FLAGS.max_seq_length, tokenizer, train_file)
tf.logging.info("***** Running training *****")
tf.logging.info(" Num examples = %d", len(train_examples))
tf.logging.info(" Batch size = %d", FLAGS.train_batch_size)
tf.logging.info(" Num steps = %d", num_train_steps)
train_input_fn = file_based_input_fn_builder(
input_file=train_file,
seq_length=FLAGS.max_seq_length,
is_training=True,
drop_remainder=True)
estimator.train(input_fn=train_input_fn, max_steps=num_train_steps)
# export pb file
if FLAGS.do_export:
estimator._export_to_tpu = False
estimator.export_savedmodel(FLAGS.export_dir, serving_input_fn)
if FLAGS.do_eval:
eval_examples = processor.get_dev_examples(FLAGS.data_dir)
num_actual_eval_examples = len(eval_examples)
if FLAGS.use_tpu:
# TPU requires a fixed batch size for all batches, therefore the number
# of examples must be a multiple of the batch size, or else examples
# will get dropped. So we pad with fake examples which are ignored
# later on. These do NOT count towards the metric (all tf.metrics
# support a per-instance weight, and these get a weight of 0.0).
while len(eval_examples) % FLAGS.eval_batch_size != 0:
eval_examples.append(PaddingInputExample())
eval_file = os.path.join(FLAGS.output_dir, "eval.tf_record")
file_based_convert_examples_to_features(
eval_examples, label_list, FLAGS.max_seq_length, tokenizer, eval_file)
tf.logging.info("***** Running evaluation *****")
tf.logging.info(" Num examples = %d (%d actual, %d padding)",
len(eval_examples), num_actual_eval_examples,
len(eval_examples) - num_actual_eval_examples)
tf.logging.info(" Batch size = %d", FLAGS.eval_batch_size)
# This tells the estimator to run through the entire set.
eval_steps = None
# However, if running eval on the TPU, you will need to specify the
# number of steps.
if FLAGS.use_tpu:
assert len(eval_examples) % FLAGS.eval_batch_size == 0
eval_steps = int(len(eval_examples) // FLAGS.eval_batch_size)
eval_drop_remainder = True if FLAGS.use_tpu else False
eval_input_fn = file_based_input_fn_builder(
input_file=eval_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=eval_drop_remainder)
result = estimator.evaluate(input_fn=eval_input_fn, steps=eval_steps)
output_eval_file = os.path.join(FLAGS.output_dir, "eval_results.txt")
with tf.gfile.GFile(output_eval_file, "w") as writer:
tf.logging.info("***** Eval results *****")
for key in sorted(result.keys()):
tf.logging.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
if FLAGS.do_predict:
predict_examples = processor.get_test_examples(FLAGS.data_dir)
num_actual_predict_examples = len(predict_examples)
if FLAGS.use_tpu:
# TPU requires a fixed batch size for all batches, therefore the number
# of examples must be a multiple of the batch size, or else examples
# will get dropped. So we pad with fake examples which are ignored
# later on.
while len(predict_examples) % FLAGS.predict_batch_size != 0:
predict_examples.append(PaddingInputExample())
predict_file = os.path.join(FLAGS.output_dir, "predict.tf_record")
file_based_convert_examples_to_features(predict_examples, label_list,
FLAGS.max_seq_length, tokenizer,
predict_file)
tf.logging.info("***** Running prediction*****")
tf.logging.info(" Num examples = %d (%d actual, %d padding)",
len(predict_examples), num_actual_predict_examples,
len(predict_examples) - num_actual_predict_examples)
tf.logging.info(" Batch size = %d", FLAGS.predict_batch_size)
predict_drop_remainder = True if FLAGS.use_tpu else False
predict_input_fn = file_based_input_fn_builder(
input_file=predict_file,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=predict_drop_remainder)
result = estimator.predict(input_fn=predict_input_fn)
output_predict_file = os.path.join(FLAGS.output_dir, "test_results.tsv")
with tf.gfile.GFile(output_predict_file, "w") as writer:
num_written_lines = 0
tf.logging.info("***** Predict results *****")
for (i, prediction) in enumerate(result):
probabilities = prediction["probabilities"]
if i >= num_actual_predict_examples:
break
output_line = "\t".join(
str(class_probability)
for class_probability in probabilities) + "\n"
writer.write(output_line)
num_written_lines += 1
assert num_written_lines == num_actual_predict_examples
if __name__ == "__main__":
flags.mark_flag_as_required("data_dir")
flags.mark_flag_as_required("task_name")
flags.mark_flag_as_required("vocab_file")
flags.mark_flag_as_required("bert_config_file")
flags.mark_flag_as_required("output_dir")
tf.app.run()
| [
"tensorflow.metrics.accuracy",
"tensorflow.FixedLenFeature",
"tensorflow.nn.log_softmax",
"tensorflow.estimator.export.build_raw_serving_input_receiver_fn",
"tensorflow.reduce_sum",
"tensorflow.cast",
"tensorflow.gfile.GFile",
"tensorflow.train.init_from_checkpoint",
"tensorflow.distribute.cluster_resolver.TPUClusterResolver",
"tensorflow.gfile.MakeDirs",
"tensorflow.to_int32",
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"tensorflow.python_io.TFRecordWriter",
"tensorflow.logging.set_verbosity",
"tensorflow.trainable_variables",
"tensorflow.parse_single_example",
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"tensorflow.app.run",
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"tensorflow.matmul",
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"tensorflow.one_hot",
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"tensorflow.train.Features",
"tensorflow.nn.bias_add",
"tensorflow.nn.softmax",
"tensorflow.constant",
"tensorflow.train.Scaffold",
"tensorflow.reduce_mean",
"tensorflow.flags.DEFINE_string",
"tensorflow.variable_scope"
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a-rahman/gpt-2 | afe2f087c243823885f714c53b5f910585f54878 | import numpy as np
# Communication to TensorFlow server via gRPC
import grpc
import tensorflow as tf
# TensorFlow serving stuff to send messages
from tensorflow_serving.apis import predict_pb2
from tensorflow_serving.apis import prediction_service_pb2_grpc
from tensorflow.contrib.util import make_tensor_proto
from os import listdir
from os.path import isfile, join
timeout = 60.0
channel = grpc.insecure_channel('localhost:8501')
stub = prediction_service_pb2_grpc.PredictionServiceStub(channel)
input_data = np.array([[2061, 318, 428, 30]], dtype='int32')
# Boiler-plate
request = predict_pb2.PredictRequest()
# Set request objects using the tf-serving `CopyFrom` setter method
request.model_spec.name = '0'
request.model_spec.signature_name = 'serving_default'
# This is correct (default constant).
request.inputs['input'].CopyFrom(make_tensor_proto(input_data,
shape=input_data.shape))
# Boiler-Plate
response = stub.Predict(request, timeout)
result = response.outputs['output']
print(tf.make_ndarray(result))
| [
"tensorflow.make_ndarray",
"numpy.array",
"tensorflow.contrib.util.make_tensor_proto"
] | src/grpc_test.py | [(18, 'grpc.insecure_channel', 'grpc.insecure_channel', (['"""localhost:8501"""'], {}), False, 'import grpc\n'), (19, 'tensorflow_serving.apis.prediction_service_pb2_grpc.PredictionServiceStub', 'prediction_service_pb2_grpc.PredictionServiceStub', (['channel'], {}), False, 'from tensorflow_serving.apis import prediction_service_pb2_grpc\n'), (21, 'numpy.array', 'np.array', (['[[2061, 318, 428, 30]]'], {'dtype': '"""int32"""'}), True, 'import numpy as np\n'), (23, 'tensorflow_serving.apis.predict_pb2.PredictRequest', 'predict_pb2.PredictRequest', ([], {}), False, 'from tensorflow_serving.apis import predict_pb2\n'), (29, 'tensorflow.contrib.util.make_tensor_proto', 'make_tensor_proto', (['input_data'], {'shape': 'input_data.shape'}), False, 'from tensorflow.contrib.util import make_tensor_proto\n'), (36, 'tensorflow.make_ndarray', 'tf.make_ndarray', (['result'], {}), True, 'import tensorflow as tf\n')] |
YuxuanXie/ma-gym | dac30805ddcdfe3dee5f7cac520868505a9bcd5e | import gym
import ma_gym
import random
import datetime
import numpy as np
import tensorflow as tf
def get_variable(name, shape):
return tf.get_variable(name, shape, tf.float32,
tf.initializers.truncated_normal(0,0.01))
def Qmix_mixer(agent_qs, state, state_dim, n_agents, n_h_mixer):
"""
Args:
agent_qs: shape [batch, n_agents]
state: shape [batch, state_dim]
state_dim: integer
n_agents: integer
n_h_mixer: integer
"""
agent_qs_reshaped = tf.reshape(agent_qs, [-1, 1, n_agents])
# n_h_mixer * n_agents because result will be reshaped into matrix
hyper_w_1 = get_variable('hyper_w_1', [state_dim, n_h_mixer*n_agents])
hyper_w_final = get_variable('hyper_w_final', [state_dim, n_h_mixer])
hyper_b_1 = tf.get_variable('hyper_b_1', [state_dim, n_h_mixer])
hyper_b_final_l1 = tf.layers.dense(inputs=state, units=n_h_mixer, activation=tf.nn.relu,
use_bias=False, name='hyper_b_final_l1')
hyper_b_final = tf.layers.dense(inputs=hyper_b_final_l1, units=1, activation=None,
use_bias=False, name='hyper_b_final')
# First layer
w1 = tf.abs(tf.matmul(state, hyper_w_1))
b1 = tf.matmul(state, hyper_b_1)
w1_reshaped = tf.reshape(w1, [-1, n_agents, n_h_mixer]) # reshape into batch of matrices
b1_reshaped = tf.reshape(b1, [-1, 1, n_h_mixer])
# [batch, 1, n_h_mixer]
hidden = tf.nn.elu(tf.matmul(agent_qs_reshaped, w1_reshaped) + b1_reshaped)
# Second layer
w_final = tf.abs(tf.matmul(state, hyper_w_final))
w_final_reshaped = tf.reshape(w_final, [-1, n_h_mixer, 1]) # reshape into batch of matrices
b_final_reshaped = tf.reshape(hyper_b_final, [-1, 1, 1])
# [batch, 1, 1]
y = tf.matmul(hidden, w_final_reshaped) + b_final_reshaped
q_tot = tf.reshape(y, [-1, 1])
return q_tot
class QMix():
def __init__(self, env, num_s, num_a, lr=0.0001, gamma=0.99, replace_target_iter=5000,
memory_size=200000, batch_size=256, epsilon=1, epsilon_decay=0.0001):
self.n_agents = 2
self.env = env
self.name = "qmix"
self.num_global_s = 2*num_s
self.num_s = num_s
self.num_a = num_a
self.lr = lr
self.gamma = gamma
self.replace_target_iter = replace_target_iter
self.memory_size = memory_size
self.batch_size = batch_size
self.epsilon = epsilon
self.epsilon_decay = epsilon_decay
self.epsilon_min = 0.1
self.learn_step_cnt = 0 # total learning step
self.episode_cnt = 0
self.memory = []
self.memory_counter = 0
self._build_net()
t_params = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=self.name + '/target_net')
e_params = tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=self.name + '/eval_net')
e_params += tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=self.name + '/mixing_net' + '/eval_hyper')
t_params += tf.get_collection(tf.GraphKeys.GLOBAL_VARIABLES, scope=self.name + '/mixing_net' + '/target_hyper')
with tf.variable_scope('soft_replacement'):
self.target_replace_op = [tf.assign(t, e) for t, e in zip(t_params, e_params)]
self.sess = tf.Session()
self.sess.run(tf.global_variables_initializer())
current_time = datetime.datetime.now().strftime("%Y%m%d-%H%M%S")
train_log_dir = 'logs/' + current_time
self.summary_writer = tf.summary.FileWriter(train_log_dir, self.sess.graph)
def _build_net(self): # we use parameter sharing among agents
with tf.variable_scope(self.name):
# ------------------ all inputs ------------------------
self.S = tf.placeholder(tf.float32, [None, self.num_global_s], name='S') # input Global State
self.s = tf.placeholder(tf.float32, [None, self.num_s], name='s1') # input state for agent1
self.S_ = tf.placeholder(tf.float32, [None, self.num_global_s], name='S_') # input Next Global State
self.s_ = tf.placeholder(tf.float32, [None, self.num_s], name='s1_') # input next state for agent1
self.R = tf.placeholder(tf.float32, [None, ], name='R') # input Reward
self.a = tf.placeholder(tf.float32, [None, self.num_a], name='a') # input Action onehot for agent1
self.done = tf.placeholder(tf.float32, [None, ], name='done') # input Done info ???
self.q_m_ = tf.placeholder(tf.float32, [None, ], name='q_value_next_max')
self.q_target = tf.placeholder(tf.float32, [None,], name='q_tot_target')
w_initializer, b_initializer = tf.random_normal_initializer(0., 0.1), tf.constant_initializer(0.0)
# ------------------ build evaluate_net ------------------
with tf.variable_scope('eval_net'):
a_fc1 = tf.layers.dense(self.s, 128, tf.nn.relu, kernel_initializer=w_initializer,
bias_initializer=b_initializer, name='agent_fc1_e')
# a_fc2 = tf.layers.dense(a_fc1, 128, tf.nn.relu, kernel_initializer=w_initializer,
# bias_initializer=b_initializer, name='agent_fc2_e')
# a_fc3 = tf.layers.dense(a_fc2, 64, tf.nn.relu, kernel_initializer=w_initializer,
# bias_initializer=b_initializer, name='agent_fc3_e')
self.q_eval = tf.layers.dense(a_fc1, self.num_a, kernel_initializer=w_initializer,
bias_initializer=b_initializer, name='q_e')
# ------------------ build target_net ------------------
with tf.variable_scope('target_net'):
a_fc1_ = tf.layers.dense(self.s_, 128, tf.nn.relu, kernel_initializer=w_initializer,
bias_initializer=b_initializer, name='agent_fc1_t')
# a_fc2_ = tf.layers.dense(a_fc1_, 128, tf.nn.relu, kernel_initializer=w_initializer,
# bias_initializer=b_initializer, name='agent_fc2_t')
# a_fc3_ = tf.layers.dense(a_fc2_, 64, tf.nn.relu, kernel_initializer=w_initializer,
# bias_initializer=b_initializer, name='agent_fc3_t')
self.q_next = tf.layers.dense(a_fc1_, self.num_a, kernel_initializer=w_initializer,
bias_initializer=b_initializer, name='q_t')
# [batch*n_agents, 1]
self.q_selected = tf.reduce_sum(tf.multiply(self.q_eval, self.a), axis=1)
# ------------------ build mixing_net ------------------
with tf.variable_scope('mixing_net'):
# [batch, n_agents]
self.q_concat = tf.reshape(self.q_selected, [-1, self.n_agents])
self.q_concat_ =tf.reshape(self.q_m_, [-1, self.n_agents])
with tf.variable_scope('eval_hyper'):
self.Q_tot = Qmix_mixer(self.q_concat, self.S, self.num_global_s, self.n_agents, 32)
with tf.variable_scope('target_hyper'):
self.Q_tot_ = Qmix_mixer(self.q_concat_, self.S_, self.num_global_s, self.n_agents, 32)
# with tf.variable_scope('layer_mix_eval'):
# lin1 = tf.matmul(tf.reshape(self.q_concat, shape=[-1, 1, self.n_agents]), self.w1) + tf.reshape(self.b1, shape=[-1, 1, 32])
# a1 = tf.nn.elu(lin1, name='a1')
# self.Q_tot = tf.reshape(tf.matmul(a1, self.w2), shape=[-1, 1]) + self.b2
# with tf.variable_scope('layer_mix_target'):
# lin1_ = tf.matmul(tf.reshape(self.q_concat_, shape=[-1, 1, self.n_agents]), self.w1_) + tf.reshape(self.b1_, shape=[-1, 1, 32])
# a1_ = tf.nn.elu(lin1_, name='a1_')
# self.Q_tot_ = tf.reshape(tf.matmul(a1_, self.w2_), shape=[-1, 1]) + self.b2_
# todo: add q_target, loss, train_op
# with tf.variable_scope('q_target'):
with tf.variable_scope('loss'):
self.loss = tf.reduce_mean(tf.squared_difference(self.q_target, tf.squeeze(self.Q_tot), name='TD_error'))
# self.loss = tf.reduce_mean(tf.squared_difference(self.q_target, self.Q_tot, name='TD_error'))
with tf.variable_scope('train'):
self._train_op = tf.train.RMSPropOptimizer(self.lr).minimize(self.loss)
def act(self, state):
if np.random.uniform() > self.epsilon :# pick the argmax action
s = np.array(state)
if len(s.shape) < 2:
s = np.array(state)[np.newaxis, :]
q_eval = self.sess.run(self.q_eval, feed_dict={self.s: s})
action = np.argmax(q_eval, axis=-1).tolist()
else: # pick random action
action = self.env.action_space.sample()
return action
def store(self, EXP):
self.memory_counter += 1
if len(self.memory) > self.memory_size:
# random replacement
index = np.random.randint(0, self.memory_size)
self.memory[index] = EXP
else:
self.memory.append(EXP)
def learn(self):
if len(self.memory) < self.batch_size :
return
# sample batch exp from memory
if self.learn_step_cnt % 10000 == 0:
print(self.name, 'update ----> learn_step_cnt', self.learn_step_cnt)
batch_exp = random.sample(self.memory, self.batch_size)
S, s, a, R, S_, s_, done = [[] for _ in range(7)]
for exp in batch_exp:
S.append(exp[0])
s.append([exp[1] , exp[2]])
a.append([exp[3] , exp[4]])
R.append(exp[5])
S_.append(exp[6])
s_.append([exp[7], exp[8]])
done.append(exp[9])
# to get q_tot
s = np.stack(s)
a = np.stack(a)
s_ = np.stack(s_)
s.shape = (self.batch_size*self.n_agents, self.num_s)
s_.shape = (self.batch_size*self.n_agents, self.num_s)
actions_1hot = np.zeros([self.batch_size, self.n_agents, self.num_a], dtype=np.float32)
grid = np.indices((self.batch_size, self.n_agents))
actions_1hot[grid[0], grid[1], a] = 1
actions_1hot.shape = (self.batch_size*self.n_agents, self.num_a)
# to get q_tot_
q_ = self.sess.run(self.q_next, feed_dict={self.s_: s_})
q_m_ = np.max(q_, axis=1)
q_tot_ = self.sess.run(self.Q_tot_, feed_dict={self.S_: S_, self.q_m_: q_m_})
q_target = np.array(R) + (1 - np.array(done)) * self.gamma * np.squeeze(q_tot_, axis=-1)
# import pdb; pdb.set_trace()
tvars = tf.trainable_variables()
tvars_vals_b = self.sess.run(tvars)
# f = open("before.txt", "a")
# for var, val in zip(tvars, tvars_vals):
# f.write(var,)
# f.close()
# update
_, cost = self.sess.run([self._train_op, self.loss],
feed_dict={self.S: S, self.s:s, self.a: actions_1hot,
self.q_target: q_target, self.done: done})
# print('cost', cost)
tvars_vals_a = self.sess.run(tvars)
# f = open("after.txt", "a")
# for var, val in zip(tvars, tvars_vals):
# f.write(tvars_vals)
# f.close()
import pdb; pdb.set_trace()
self.write_summary_scalar('loss', cost, self.learn_step_cnt)
self.write_summary_scalar('epsilon', self.epsilon, self.learn_step_cnt)
self.write_summary_scalar('memory_cnt', self.memory_counter, self.learn_step_cnt)
self.epsilon = max(self.epsilon - self.epsilon_decay, self.epsilon_min) # decay epsilon
self.learn_step_cnt += 1
# check to do the soft replacement of target net
if self.learn_step_cnt % self.replace_target_iter == 0 and self.learn_step_cnt:
self.sess.run(self.target_replace_op)
def train(self):
for i in range(50000):
done_n = [False for _ in range(env.n_agents)]
ep_reward = 0
obs = env.reset()
while not all(done_n):
# env.render()
action = self.act(obs)
obs_n, reward_n, done_n, info = env.step(action)
ep_reward += sum(reward_n)
obs_glob = [obs[0] + obs[1]]
obs_glob_next = [obs_n[0] + obs_n[1]]
self.store(obs_glob + obs + action + [sum(reward_n)] + obs_glob_next + obs_n + [all(done_n)])
obs = obs_n
self.learn()
self.write_summary_scalar("ep_reward", ep_reward, self.learn_step_cnt)
def write_summary_scalar(self, tag, value, iteration):
self.summary_writer.add_summary(tf.Summary(value=[tf.Summary.Value(tag=tag, simple_value=value)]), iteration)
env = gym.make('Switch2-v0')
alg = QMix(env, env.observation_space[0].shape[0], env.action_space[0].n)
# alg = QMix(env, env.observation_space.shape[0], env.action_space.n)
alg.train()
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takesi0627/ddc | c9a9cd8a8858f6fe8842585ea7fefd523b818691 | import random
import tensorflow as tf
import numpy as np
dtype = tf.float32
np_dtype = dtype.as_numpy_dtype
class OnsetNet:
def __init__(self,
mode,
batch_size,
audio_context_radius,
audio_nbands,
audio_nchannels,
nfeats,
cnn_filter_shapes,
cnn_init,
cnn_pool,
cnn_rnn_zack,
rnn_cell_type,
rnn_size,
rnn_nlayers,
rnn_init,
rnn_nunroll,
rnn_keep_prob,
dnn_sizes,
dnn_init,
dnn_keep_prob,
dnn_nonlin,
target_weight_strategy, # 'rect', 'last', 'pos', 'seq'
grad_clip,
opt,
export_feat_name=None,
zack_hack=0):
audio_context_len = audio_context_radius * 2 + 1
mode = mode
do_cnn = len(cnn_filter_shapes) > 0
do_rnn = rnn_size > 0 and rnn_nlayers > 0
do_dnn = len(dnn_sizes) > 0
if not do_rnn:
assert rnn_nunroll == 1
if cnn_rnn_zack:
assert audio_context_len == 1
assert zack_hack > 0 and zack_hack % 2 == 0
export_feat_tensors = {}
# Input tensors
feats_audio_nunroll = tf.placeholder(dtype, shape=[batch_size, rnn_nunroll + zack_hack, audio_context_len, audio_nbands, audio_nchannels], name='feats_audio')
feats_other_nunroll = tf.placeholder(dtype, shape=[batch_size, rnn_nunroll, nfeats], name='feats_other')
print('feats_audio: {}'.format(feats_audio_nunroll.get_shape()))
print('feats_other: {}'.format(feats_other_nunroll.get_shape()))
if mode != 'gen':
targets_nunroll = tf.placeholder(dtype, shape=[batch_size, rnn_nunroll])
# TODO: tf.ones acts as an overridable placeholder but this is still awkward
target_weights_nunroll = tf.ones([batch_size, rnn_nunroll], dtype)
# Reshape input tensors to remove nunroll dim; will briefly restore later during RNN if necessary
if cnn_rnn_zack:
feats_audio = tf.reshape(feats_audio_nunroll, shape=[batch_size, rnn_nunroll + zack_hack, audio_nbands, audio_nchannels])
else:
feats_audio = tf.reshape(feats_audio_nunroll, shape=[batch_size * rnn_nunroll, audio_context_len, audio_nbands, audio_nchannels])
feats_other = tf.reshape(feats_other_nunroll, shape=[batch_size * rnn_nunroll, nfeats])
if mode != 'gen':
targets = tf.reshape(targets_nunroll, shape=[batch_size * rnn_nunroll])
target_weights = tf.reshape(target_weights_nunroll, shape=[batch_size * rnn_nunroll])
# CNN
cnn_output = feats_audio
if do_cnn:
layer_last = feats_audio
nfilt_last = audio_nchannels
for i, ((ntime, nband, nfilt), (ptime, pband)) in enumerate(zip(cnn_filter_shapes, cnn_pool)):
layer_name = 'cnn_{}'.format(i)
with tf.variable_scope(layer_name):
filters = tf.get_variable('filters', [ntime, nband, nfilt_last, nfilt], initializer=cnn_init, dtype=dtype)
biases = tf.get_variable('biases', [nfilt], initializer=tf.constant_initializer(0.1), dtype=dtype)
if cnn_rnn_zack:
padding = 'SAME'
else:
padding = 'VALID'
conv = tf.nn.conv2d(layer_last, filters, [1, 1, 1, 1], padding=padding)
biased = tf.nn.bias_add(conv, biases)
convolved = tf.nn.relu(biased)
pool_shape = [1, ptime, pband, 1]
pooled = tf.nn.max_pool(convolved, ksize=pool_shape, strides=pool_shape, padding='SAME')
print('{}: {}'.format(layer_name, pooled.get_shape()))
export_feat_tensors[layer_name] = pooled
# TODO: CNN dropout?
layer_last = pooled
nfilt_last = nfilt
cnn_output = layer_last
# Flatten CNN and concat with other features
zack_hack_div_2 = 0
if cnn_rnn_zack:
zack_hack_div_2 = zack_hack // 2
cnn_output = tf.slice(cnn_output, [0, zack_hack_div_2, 0, 0], [-1, rnn_nunroll, -1, -1])
nfeats_conv = reduce(lambda x, y: x * y, [int(x) for x in cnn_output.get_shape()[-2:]])
else:
nfeats_conv = reduce(lambda x, y: x * y, [int(x) for x in cnn_output.get_shape()[-3:]])
feats_conv = tf.reshape(cnn_output, [batch_size * rnn_nunroll, nfeats_conv])
nfeats_tot = nfeats_conv + nfeats
feats_all = tf.concat(1, [feats_conv, feats_other])
print('feats_cnn: {}'.format(feats_conv.get_shape()))
print('feats_all: {}'.format(feats_all.get_shape()))
# Project to RNN size
rnn_output = feats_all
rnn_output_size = nfeats_tot
if do_rnn:
with tf.variable_scope('rnn_proj'):
rnn_proj_w = tf.get_variable('W', [nfeats_tot, rnn_size], initializer=tf.uniform_unit_scaling_initializer(factor=1.0, dtype=dtype), dtype=dtype)
rnn_proj_b = tf.get_variable('b', [rnn_size], initializer=tf.constant_initializer(0.0), dtype=dtype)
rnn_inputs = tf.nn.bias_add(tf.matmul(feats_all, rnn_proj_w), rnn_proj_b)
rnn_inputs = tf.reshape(rnn_inputs, [batch_size, rnn_nunroll, rnn_size])
rnn_inputs = tf.split(rnn_inputs, rnn_nunroll, axis=1)
rnn_inputs = [tf.squeeze(input_, [1]) for input_ in rnn_inputs]
if rnn_cell_type == 'rnn':
cell_fn = tf.nn.rnn_cell.BasicRNNCell
elif rnn_cell_type == 'gru':
cell_fn = tf.nn.rnn_cell.GRUCell
elif rnn_cell_type == 'lstm':
cell_fn = tf.nn.rnn_cell.BasicLSTMCell
else:
raise NotImplementedError()
cell = cell_fn(rnn_size)
if mode == 'train' and rnn_keep_prob < 1.0:
cell = tf.nn.rnn_cell.DropoutWrapper(cell, output_keep_prob=rnn_keep_prob)
if rnn_nlayers > 1:
cell = tf.nn.rnn_cell.MultiRNNCell([cell] * rnn_nlayers)
initial_state = cell.zero_state(batch_size, dtype)
# RNN
# TODO: weight init
with tf.variable_scope('rnn_unroll'):
state = initial_state
outputs = []
for i in xrange(rnn_nunroll):
if i > 0:
tf.get_variable_scope().reuse_variables()
(cell_output, state) = cell(rnn_inputs[i], state)
outputs.append(cell_output)
final_state = state
rnn_output = tf.reshape(tf.concat(outputs, axis=1), [batch_size * rnn_nunroll, rnn_size])
rnn_output_size = rnn_size
print('rnn_output: {}'.format(rnn_output.get_shape()))
# Dense NN
dnn_output = rnn_output
dnn_output_size = rnn_output_size
if do_dnn:
last_layer = rnn_output
last_layer_size = rnn_output_size
for i, layer_size in enumerate(dnn_sizes):
layer_name = 'dnn_{}'.format(i)
with tf.variable_scope(layer_name):
dnn_w = tf.get_variable('W', shape=[last_layer_size, layer_size], initializer=dnn_init, dtype=dtype)
dnn_b = tf.get_variable('b', shape=[layer_size], initializer=tf.constant_initializer(0.0), dtype=dtype)
projected = tf.nn.bias_add(tf.matmul(last_layer, dnn_w), dnn_b)
# TODO: argument nonlinearity, change bias to 0.1 if relu
if dnn_nonlin == 'tanh':
last_layer = tf.nn.tanh(projected)
elif dnn_nonlin == 'sigmoid':
last_layer = tf.nn.sigmoid(projected)
elif dnn_nonlin == 'relu':
last_layer = tf.nn.relu(projected)
else:
raise NotImplementedError()
if mode == 'train' and dnn_keep_prob < 1.0:
last_layer = tf.nn.dropout(last_layer, dnn_keep_prob)
last_layer_size = layer_size
print('{}: {}'.format(layer_name, last_layer.get_shape()))
export_feat_tensors[layer_name] = last_layer
dnn_output = last_layer
dnn_output_size = last_layer_size
# Logistic regression
with tf.variable_scope('logit') as scope:
logit_w = tf.get_variable('W', shape=[dnn_output_size, 1], initializer=tf.truncated_normal_initializer(stddev=1.0 / dnn_output_size, dtype=dtype), dtype=dtype)
logit_b = tf.get_variable('b', shape=[1], initializer=tf.constant_initializer(0.0), dtype=dtype)
logits = tf.squeeze(tf.nn.bias_add(tf.matmul(dnn_output, logit_w), logit_b), squeeze_dims=[1])
prediction = tf.nn.sigmoid(logits)
prediction_inspect = tf.reshape(prediction, [batch_size, rnn_nunroll])
prediction_final = tf.squeeze(tf.slice(prediction_inspect, [0, rnn_nunroll - 1], [-1, 1]), squeeze_dims=[1])
print('logit: {}'.format(logits.get_shape()))
# Compute loss
if mode != 'gen':
neg_log_lhoods = tf.nn.sigmoid_cross_entropy_with_logits(logits=logits, labels=targets)
if target_weight_strategy == 'rect':
avg_neg_log_lhood = tf.reduce_mean(neg_log_lhoods)
else:
neg_log_lhoods = tf.multiply(neg_log_lhoods, target_weights)
# be careful to have at least one weight be nonzero
# should we be taking the mean elem-wise by batch? i think this is a big bug
avg_neg_log_lhood = tf.reduce_sum(neg_log_lhoods) / tf.reduce_sum(target_weights)
neg_log_lhoods_inspect = tf.reshape(neg_log_lhoods, [batch_size, rnn_nunroll])
# Train op
if mode == 'train':
lr = tf.Variable(0.0, trainable=False)
self._lr = lr
self._lr_summary = tf.summary.scalar('learning_rate', self._lr)
tvars = tf.trainable_variables()
grads = tf.gradients(avg_neg_log_lhood, tvars)
if grad_clip > 0.0:
grads, _ = tf.clip_by_global_norm(grads, grad_clip)
if opt == 'sgd':
optimizer = tf.train.GradientDescentOptimizer(lr)
else:
raise NotImplementedError()
train_op = optimizer.apply_gradients(zip(grads, tvars), global_step=tf.contrib.framework.get_or_create_global_step())
# Tensor exports
self.feats_audio = feats_audio_nunroll
self.feats_other = feats_other_nunroll
if export_feat_name:
self.feats_export = export_feat_tensors[export_feat_name]
self.prediction = prediction_inspect
self.prediction_final = prediction_final
if mode != 'gen':
self.neg_log_lhoods = neg_log_lhoods_inspect
self.avg_neg_log_lhood = avg_neg_log_lhood
self.targets = targets_nunroll
self.target_weights = target_weights_nunroll
if mode == 'train':
self.train_op = train_op
if mode != 'train' and do_rnn:
self.initial_state = initial_state
self.final_state = final_state
self.zack_hack_div_2 = zack_hack_div_2
self.mode = mode
self.batch_size = batch_size
self.rnn_nunroll = rnn_nunroll
self.do_rnn = do_rnn
self.target_weight_strategy = target_weight_strategy
def assign_lr(self, sess, lr_new):
assert self.mode == 'train'
sess.run(tf.assign(self._lr, lr_new))
return sess.run(self._lr_summary)
def prepare_train_batch(self, charts, randomize_charts=False, **kwargs):
# process kwargs
exclude_kwarg_names = ['exclude_onset_neighbors', 'exclude_pre_onsets', 'exclude_post_onsets', 'include_onsets']
exclude_kwargs = {k:v for k,v in kwargs.items() if k in exclude_kwarg_names}
feat_kwargs = {k:v for k,v in kwargs.items() if k not in exclude_kwarg_names}
# pick random chart and sample balanced classes
if randomize_charts:
del exclude_kwargs['exclude_pre_onsets']
del exclude_kwargs['exclude_post_onsets']
del exclude_kwargs['include_onsets']
if self.do_rnn:
exclude_kwargs['nunroll'] = self.rnn_nunroll
# create batch
batch_feats_audio = []
batch_feats_other = []
batch_targets = []
batch_target_weights = []
for _ in xrange(self.batch_size):
chart = charts[random.randint(0, len(charts) - 1)]
frame_idx = chart.sample(1, **exclude_kwargs)[0]
subseq_start = frame_idx - (self.rnn_nunroll - 1)
if self.target_weight_strategy == 'pos' or self.target_weight_strategy == 'posbal':
target_sum = 0.0
while target_sum == 0.0:
audio, other, target = chart.get_subsequence(subseq_start, self.rnn_nunroll, np_dtype, **feat_kwargs)
target_sum = np.sum(target)
if target_sum == 0.0:
frame_idx = chart.sample_blanks(1, **exclude_kwargs).pop()
subseq_start = frame_idx - (self.rnn_nunroll - 1)
else:
feat_kwargs['zack_hack_div_2'] = self.zack_hack_div_2
audio, other, target = chart.get_subsequence(subseq_start, self.rnn_nunroll, np_dtype, **feat_kwargs)
batch_feats_audio.append(audio)
batch_feats_other.append(other)
batch_targets.append(target)
if self.target_weight_strategy == 'rect':
weight = np.ones_like(target)
elif self.target_weight_strategy == 'last':
weight = np.zeros_like(target)
weight[-1] = 1.0
elif self.target_weight_strategy == 'pos':
weight = target[:]
elif self.target_weight_strategy == 'posbal':
negs = set(np.where(target == 0)[0])
negs_weighted = random.sample(negs, int(np.sum(target)))
weight = target[:]
weight[list(negs_weighted)] = 1.0
batch_target_weights.append(weight)
# create return arrays
batch_feats_audio = np.array(batch_feats_audio, dtype=np_dtype)
batch_feats_other = np.array(batch_feats_other, dtype=np_dtype)
batch_targets = np.array(batch_targets, dtype=np_dtype)
batch_target_weights = np.array(batch_target_weights, dtype=np_dtype)
return batch_feats_audio, batch_feats_other, batch_targets, batch_target_weights
else:
chart = charts[random.randint(0, len(charts) - 1)]
chart_nonsets = chart.get_nonsets()
if exclude_kwargs.get('include_onsets', False):
npos = 0
nneg = self.batch_size
else:
npos = min(self.batch_size // 2, chart_nonsets)
nneg = self.batch_size - npos
samples = chart.sample_onsets(npos) + chart.sample_blanks(nneg, **exclude_kwargs)
random.shuffle(samples)
# create batch
batch_feats_audio = []
batch_feats_other = []
batch_targets = []
batch_target_weights = []
for frame_idx in samples:
subseq_start = frame_idx - (self.rnn_nunroll - 1)
if self.target_weight_strategy == 'pos' or self.target_weight_strategy == 'posbal':
target_sum = 0.0
while target_sum == 0.0:
audio, other, target = chart.get_subsequence(subseq_start, self.rnn_nunroll, np_dtype, **feat_kwargs)
target_sum = np.sum(target)
if target_sum == 0.0:
frame_idx = chart.sample_blanks(1, **exclude_kwargs).pop()
subseq_start = frame_idx - (self.rnn_nunroll - 1)
else:
feat_kwargs['zack_hack_div_2'] = self.zack_hack_div_2
audio, other, target = chart.get_subsequence(subseq_start, self.rnn_nunroll, np_dtype, **feat_kwargs)
batch_feats_audio.append(audio)
batch_feats_other.append(other)
batch_targets.append(target)
if self.target_weight_strategy == 'rect':
weight = np.ones_like(target)
elif self.target_weight_strategy == 'last':
weight = np.zeros_like(target)
weight[-1] = 1.0
elif self.target_weight_strategy == 'pos':
weight = target[:]
elif self.target_weight_strategy == 'posbal':
negs = set(np.where(target == 0)[0])
negs_weighted = random.sample(negs, int(np.sum(target)))
weight = target[:]
weight[list(negs_weighted)] = 1.0
batch_target_weights.append(weight)
# create return arrays
batch_feats_audio = np.array(batch_feats_audio, dtype=np_dtype)
batch_feats_other = np.array(batch_feats_other, dtype=np_dtype)
batch_targets = np.array(batch_targets, dtype=np_dtype)
batch_target_weights = np.array(batch_target_weights, dtype=np_dtype)
return batch_feats_audio, batch_feats_other, batch_targets, batch_target_weights
def iterate_eval_batches(self, eval_chart, **feat_kwargs):
assert self.target_weight_strategy == 'seq'
if self.do_rnn:
subseq_len = self.rnn_nunroll
subseq_start = -(subseq_len - 1)
else:
subseq_len = self.batch_size
subseq_start = 0
for frame_idx in xrange(subseq_start, eval_chart.get_nframes(), subseq_len):
feat_kwargs['zack_hack_div_2'] = self.zack_hack_div_2
audio, other, target = eval_chart.get_subsequence(frame_idx, subseq_len, np_dtype, **feat_kwargs)
weight = np.ones_like(target)
mask_left = max(eval_chart.get_first_onset() - frame_idx, 0)
mask_right = max((eval_chart.get_last_onset() + 1) - frame_idx, 0)
weight[:mask_left] = 0.0
weight[mask_right:] = 0.0
if self.do_rnn:
yield audio[np.newaxis, :], other[np.newaxis, :], target[np.newaxis, :], weight[np.newaxis, :]
else:
yield audio[:, np.newaxis], other[:, np.newaxis], target[:, np.newaxis], weight[:, np.newaxis]
| [
"tensorflow.get_variable",
"tensorflow.concat",
"tensorflow.nn.max_pool",
"tensorflow.reduce_sum",
"tensorflow.nn.sigmoid_cross_entropy_with_logits",
"tensorflow.uniform_unit_scaling_initializer",
"numpy.zeros_like",
"tensorflow.summary.scalar",
"numpy.where",
"tensorflow.nn.conv2d",
"numpy.ones_like",
"tensorflow.Variable",
"tensorflow.gradients",
"tensorflow.squeeze",
"tensorflow.truncated_normal_initializer",
"tensorflow.nn.rnn_cell.MultiRNNCell",
"tensorflow.trainable_variables",
"tensorflow.nn.dropout",
"tensorflow.matmul",
"tensorflow.nn.sigmoid",
"tensorflow.placeholder",
"tensorflow.nn.tanh",
"tensorflow.train.GradientDescentOptimizer",
"tensorflow.split",
"numpy.array",
"numpy.sum",
"tensorflow.nn.bias_add",
"tensorflow.nn.relu",
"tensorflow.nn.rnn_cell.DropoutWrapper",
"tensorflow.multiply",
"tensorflow.reduce_mean",
"tensorflow.slice",
"tensorflow.reshape",
"tensorflow.assign",
"tensorflow.ones",
"tensorflow.constant_initializer",
"tensorflow.clip_by_global_norm",
"tensorflow.variable_scope",
"tensorflow.contrib.framework.get_or_create_global_step",
"tensorflow.get_variable_scope"
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'np.sum', (['target'], {}), True, 'import numpy as np\n')] |
LiuHao-THU/frame3d | 2c3e35a6ab3226a963257c689ee177d69dead001 | """
A Trainable ResNet Class is defined in this file
Author: Kaihua Tang
"""
import math
import numpy as np
import tensorflow as tf
from functools import reduce
from configs import configs
class ResNet:
# some properties
"""
Initialize function
"""
def __init__(self, ResNet_npy_path=None, trainable=True, open_tensorboard=False, dropout=0.8):
if ResNet_npy_path is not None:
self.data_dict = np.load(ResNet_npy_path, encoding='latin1').item()
else:
self.data_dict = None
self.var_dict = {}
self.trainable = trainable
self.open_tensorboard = open_tensorboard
self.dropout = dropout
self.is_training = True
def set_is_training(self, isTrain):
self.is_training = isTrain
def build(self, rgb, label_num, train_mode=None, last_layer_type = "softmax"):
"""
load variable from npy to build the Resnet or Generate a new one
:param rgb: rgb image [batch, height, width, 3] values scaled [0, 1]
:param train_mode: a bool tensor, usually a placeholder: if True, dropout will be turned on
"""
red, green, blue = tf.split(axis=3, num_or_size_splits=3, value=rgb)
assert red.get_shape().as_list()[1:] == [224, 224, 1]
assert green.get_shape().as_list()[1:] == [224, 224, 1]
assert blue.get_shape().as_list()[1:] == [224, 224, 1]
bgr = tf.concat(axis=3, values=[
blue - configs['VGG_MEAN'][0],
green - configs['VGG_MEAN'][1],
red - configs['VGG_MEAN'][2],
])
print(bgr.get_shape().as_list())
assert bgr.get_shape().as_list()[1:] == [224, 224, 3]
self.bgr = bgr
self.conv1 = self.conv_layer(self.bgr, 7, 3, 64, 2, "conv1")# 112*112
self.pool1 = self.max_pool(self.conv1, 3, 2, "pool1")# 56*56 * 64
self.block1_1 = self.res_block_3_layers(self.pool1, [64, 64, 256], "res2a", True)# 56*56
self.block1_2 = self.res_block_3_layers(self.block1_1, [64, 64, 256], "res2b")# 56*56
self.block1_3 = self.res_block_3_layers(self.block1_2, [64, 64, 256], "res2c")# 56*56
self.pool2 = self.max_pool(self.block1_3, 2, 2, "pool2")# 56*56
self.block2_1 = self.res_block_3_layers(self.pool2, [128, 128, 512], "res3a", True)# 28*28
self.block2_2 = self.res_block_3_layers(self.block2_1, [128, 128, 512], "res3b")# 28*28
self.block2_3 = self.res_block_3_layers(self.block2_2, [128, 128, 512], "res3c")# 28*28
self.block2_4 = self.res_block_3_layers(self.block2_3, [128, 128, 512], "res3d")# 28*28
self.pool3 = self.max_pool(self.block2_4, 2, 2, "pool3")# 28*28
self.block3_1 = self.res_block_3_layers(self.pool3, [256, 256, 1024], "res4a", True)# 14*14
self.block3_2 = self.res_block_3_layers(self.block3_1, [256, 256, 1024], "res4b")# 14*14
self.block3_3 = self.res_block_3_layers(self.block3_2, [256, 256, 1024], "res4c")# 14*14
self.block3_4 = self.res_block_3_layers(self.block3_3, [256, 256, 1024], "res4d")# 14*14
self.block3_5 = self.res_block_3_layers(self.block3_4, [256, 256, 1024], "res4e")# 14*14
self.block3_6 = self.res_block_3_layers(self.block3_5, [256, 256, 1024], "res4f")# 14*14
#[None 7 7 512]
self.pool4 = self.max_pool(self.block3_6, 2, 2, "pool4")# 14*14
self.block4_1 = self.res_block_3_layers(self.pool4, [512, 512, 2048], "res5a", True)# 7*7
self.block4_2 = self.res_block_3_layers(self.block4_1, [512, 512, 2048], "res5b")# 7*7
self.block4_3 = self.res_block_3_layers(self.block4_2, [512, 512, 2048], "res5c")# 7*7
# upsample layer begins
self.deconv_1 = self.deconv_bn_relu(self.block4_3, name = 'deconv_1',kernel_size = 3, output_channels = 1024,
initializer = tf.contrib.layers.variance_scaling_initializer(), stride=2, bn=True, training=self.is_training)# 14*14
self.deconv_2 = self.deconv_bn_relu(self.deconv_1, name = 'deconv_2',kernel_size = 3, output_channels = 512,
initializer = tf.contrib.layers.variance_scaling_initializer(), stride=2, bn=True, training=self.is_training)# 28*28
self.deconv_3 = self.deconv_bn_relu(self.deconv_2, name = 'deconv_3',kernel_size = 3, output_channels = 256,
initializer = tf.contrib.layers.variance_scaling_initializer(), stride=2, bn=True, training=self.is_training)# 56*56
self.deconv_4 = self.deconv_bn_relu(self.deconv_3, name = 'deconv_4',kernel_size = 3, output_channels = 128,
initializer =tf.contrib.layers.variance_scaling_initializer(), stride=2, bn=True, training=self.is_training)# 112*112
self.deconv_5 = self.deconv_bn_relu(self.deconv_4, name = 'deconv_5',kernel_size = 3, output_channels = 64,
initializer =tf.contrib.layers.variance_scaling_initializer(), stride=2, bn=True, training=self.is_training)# 224*224
# self.final_layer = self.conv_layer(bottom = self.deconv_5, kernal_size = 1, in_channels = 64, out_channels = 3, stride = 1, name = 'final_layer')
self.final_layer = self.conv_bn_relu(bottom = self.deconv_5, name = 'final_layer', kernel_size = 1, output_channels = 3, initializer =tf.contrib.layers.variance_scaling_initializer(), bn = False, training = self.is_training, relu=False)
# self.pool5 = self.avg_pool(self.block4_3, 7, 1, "pool5")
#self.fc0 = self.fc_layer(self.pool5, 2048, 1024, "fc0")
#self.relu1 = tf.nn.relu(self.fc0)
#if train_mode is not None:
# self.relu1 = tf.cond(train_mode, lambda: tf.nn.dropout(self.relu1, self.dropout), lambda: self.relu1)
#elif self.trainable:
# self.relu1 = tf.nn.dropout(self.relu1, self.dropout)
self.y_soft = tf.nn.softmax(self.final_layer)
self.logits = tf.reshape(self.final_layer, (-1, 3))
print(self.logits)
self.predicted = tf.argmax(self.final_layer, axis = 3)
print(self.predicted.get_shape().as_list())
# cross_entropy = tf.nn.sparse_softmax_cross_entropy_with_logits(labels=self.labels, logits=logits, name=None)
# self.loss = tf.reduce_mean(cross_entropy, name = 'xcross_entropy')
# if(last_layer_type == "sigmoid"):
# self.prob = tf.nn.sigmoid(self.fc1, name="prob")
# elif(last_layer_type == "softmax"):
# self.prob = tf.nn.softmax(self.fc1, name="prob")
self.data_dict = None
return self.predicted
def res_block_3_layers(self, bottom, channel_list, name, change_dimension = False):
if (change_dimension):
block_conv_input = self.conv_layer(bottom = bottom, kernal_size = 1, in_channels = bottom.get_shape().as_list()[-1],
out_channels = channel_list[2], stride = 1, name = name + "_branch1")
else:
block_conv_input = bottom
input_filter = bottom.get_shape().as_list()[-1]
block_conv_1 = self.conv_layer(bottom, 1, input_filter, channel_list[0], 1, name + "_branch2a")
block_norm_1 = tf.layers.batch_normalization(inputs=block_conv_1, axis = 3, momentum=configs['_BATCH_NORM_DECAY'], epsilon=configs['_BATCH_NORM_EPSILON'], center=True, scale=True, training=self.is_training, fused=True)
block_relu_1 = tf.nn.relu(block_norm_1)
block_conv_2 = self.conv_layer(block_relu_1, 3, channel_list[0], channel_list[1], 1, name + "_branch2b")
block_norm_2 = tf.layers.batch_normalization(inputs=block_conv_2, axis = 3, momentum=configs['_BATCH_NORM_DECAY'], epsilon=configs['_BATCH_NORM_EPSILON'], center=True, scale=True, training=self.is_training, fused=True)
block_relu_2 = tf.nn.relu(block_norm_2)
block_conv_3 = self.conv_layer(block_relu_2, 1, channel_list[1], channel_list[2], 1, name + "_branch2c")
block_res = tf.add(block_conv_input, block_conv_3)
relu = tf.nn.relu(block_res)
return relu
def avg_pool(self, bottom, kernal_size = 2, stride = 2, name = "avg"):
return tf.nn.avg_pool(bottom, ksize=[1, kernal_size, kernal_size, 1], strides=[1, stride, stride, 1], padding='VALID', name=name)
def max_pool(self, bottom, kernal_size = 2, stride = 2, name = "max"):
return tf.nn.max_pool(bottom, ksize=[1, kernal_size, kernal_size, 1], strides=[1, stride, stride, 1], padding='SAME', name=name)
def conv_layer(self, bottom, kernal_size, in_channels, out_channels, stride, name):
with tf.variable_scope(name):
filt, conv_biases = self.get_conv_var(kernal_size, in_channels, out_channels, name)
conv = tf.nn.conv2d(bottom, filt, [1,stride,stride,1], padding='SAME')
bias = tf.nn.bias_add(conv, conv_biases)
tf.summary.histogram('weight', filt)
tf.summary.histogram('bias', conv_biases)
return bias
def conv_bn_relu(self, bottom,name, kernel_size, output_channels, initializer,stride=1, bn=False,training=False,relu=True):
input_channels = bottom.get_shape().as_list()[-1]
with tf.variable_scope(name) as scope:
kernel = self.variable('weights', [kernel_size, kernel_size, input_channels, output_channels], initializer, regularizer=tf.contrib.layers.l2_regularizer(0.0005))
conv = tf.nn.conv2d(bottom, kernel, [1, stride, stride, 1], padding='SAME')
biases = self.variable('biases', [output_channels], tf.constant_initializer(0.0))
conv_layer = tf.nn.bias_add(conv, biases)
if bn:
conv_layer = self.batch_norm_layer('batch_norm_layer',conv_layer,training)
if relu:
conv_layer = tf.nn.relu(conv_layer, name=scope.name)
print('Conv layer {0} -> {1}'.format(bottom.get_shape().as_list(),conv_layer.get_shape().as_list()))
return conv_layer
def batch_norm_layer(self, name, input_tensor,training):
with tf.variable_scope(name) as scope:
return tf.contrib.layers.batch_norm(input_tensor,scope=scope,is_training=training,decay=0.99)
def deconv_bn_relu(self, bottom, name, kernel_size, output_channels, initializer, stride = 1, bn=False, training=False, relu=True):
input_shape = bottom.get_shape().as_list()
input_channels = input_shape[-1]
output_shape = [input_shape[0], input_shape[1]*stride, input_shape[2]*stride, output_channels]
with tf.variable_scope(name) as scope:
kernel = self.variable('weights', [kernel_size, kernel_size, output_channels, input_channels], initializer, regularizer=tf.contrib.layers.l2_regularizer(0.0005))
deconv = tf.nn.conv2d_transpose(bottom, kernel, output_shape, [1, stride, stride, 1], padding='SAME')
biases = self.variable('biases', [output_channels], tf.constant_initializer(0.0))
deconv_layer = tf.nn.bias_add(deconv, biases)
if bn:
deconv_layer = self.batch_norm_layer('batch_norm_layer',deconv_layer,training)
if relu:
deconv_layer = tf.nn.relu(deconv_layer, name=scope.name)
print('Deconv layer {0} -> {1}'.format(bottom.get_shape().as_list(),deconv_layer.get_shape().as_list()))
return deconv_layer
def variable(self, name, shape, initializer,regularizer=None):
with tf.device('/cpu:0'):
return tf.get_variable(name, shape, initializer=initializer, regularizer=regularizer, trainable=True)
def fc_layer(self, bottom, in_size, out_size, name):
with tf.variable_scope(name):
weights, biases = self.get_fc_var(in_size, out_size, name)
x = tf.reshape(bottom, [-1, in_size])
fc = tf.nn.bias_add(tf.matmul(x, weights), biases)
tf.summary.histogram('weight', weights)
tf.summary.histogram('bias', biases)
return fc
def get_conv_var(self, filter_size, in_channels, out_channels, name):
initial_value = tf.truncated_normal([filter_size, filter_size, in_channels, out_channels], 0.0, stddev = 1 / math.sqrt(float(filter_size * filter_size)))
filters = self.get_var(initial_value = initial_value, name = name, idx = 'weights', var_name = "_filters")
initial_value = tf.truncated_normal([out_channels], 0.0, 1.0)
biases = self.get_var(initial_value = initial_value, name = name, idx = 'biases', var_name = "_biases")
return filters, biases
def get_fc_var(self, in_size, out_size, name):
"""
in_size : number of input feature size
out_size : number of output feature size
name : block_layer name
"""
initial_value = tf.truncated_normal([in_size, out_size], 0.0, stddev = 1 / math.sqrt(float(in_size)))
weights = self.get_var(initial_value, name, 0, name + "_weights")
initial_value = tf.truncated_normal([out_size], 0.0, 1.0)
biases = self.get_var(initial_value, name, 1, name + "_biases")
return weights, biases
def get_var(self, initial_value, name, idx, var_name):
if self.data_dict is not None and idx in self.data_dict[name]:
value = self.data_dict[name][idx]
else:
value = initial_value
if self.trainable:
var = tf.get_variable(name = var_name, initializer=value, trainable=True)
# tf.Variable(value, name=var_name)
else:
var = tf.constant(value, dtype=tf.float32, name=var_name)
self.var_dict[(name, idx)] = var
# print var_name, var.get_shape().as_list()
assert var.get_shape() == initial_value.get_shape()
return var
def save_npy(self, sess, npy_path="./Resnet-save.npy"):
"""
Save this model into a npy file
"""
assert isinstance(sess, tf.Session)
data_dict = {}
for (name, idx), var in list(self.var_dict.items()):
var_out = sess.run(var)
if name not in data_dict:
data_dict[name] = {}
data_dict[name][idx] = var_out
np.save(npy_path, data_dict)
print(("file saved", npy_path))
return npy_path
def get_var_count(self):
count = 0
for v in list(self.var_dict.values()):
count += reduce(lambda x, y: x * y, v.get_shape().as_list())
return count
# def batch_norm_scale(self, bottom, use_bias = True,):
# bottom_shape = bottom.get_shape()
# params_shape = bottom_shape[-1:]
# if use_bias:
# bias = _get_variable('bias', params_shape,
# initializer=tf.zeros_initializer)
# return x + bias
# axis = list(range(len(x_shape) - 1))
# beta = _get_variable('beta',
# params_shape,
# initializer=tf.zeros_initializer)
# gamma = _get_variable('gamma',
# params_shape,
# initializer=tf.ones_initializer)
# moving_mean = _get_variable('moving_mean',
# params_shape,
# initializer=tf.zeros_initializer,
# trainable=False)
# moving_variance = _get_variable('moving_variance',
# params_shape,
# initializer=tf.ones_initializer,
# trainable=False)
# # These ops will only be preformed when training.
# mean, variance = tf.nn.moments(x, axis)
# update_moving_mean = moving_averages.assign_moving_average(moving_mean,
# mean, BN_DECAY)
# update_moving_variance = moving_averages.assign_moving_average(
# moving_variance, variance, BN_DECAY)
# tf.add_to_collection(UPDATE_OPS_COLLECTION, update_moving_mean)
# tf.add_to_collection(UPDATE_OPS_COLLECTION, update_moving_variance)
# mean, variance = control_flow_ops.cond(
# c['is_training'], lambda: (mean, variance),
# lambda: (moving_mean, moving_variance))
# x = tf.nn.batch_normalization(x, mean, variance, beta, gamma, BN_EPSILON)
# #x.set_shape(inputs.get_shape()) ??
# return x
| [
"tensorflow.device",
"tensorflow.get_variable",
"tensorflow.concat",
"tensorflow.nn.max_pool",
"tensorflow.nn.conv2d_transpose",
"tensorflow.nn.conv2d",
"tensorflow.layers.batch_normalization",
"tensorflow.contrib.layers.variance_scaling_initializer",
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"tensorflow.add",
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"tensorflow.constant",
"tensorflow.reshape",
"tensorflow.constant_initializer",
"tensorflow.contrib.layers.l2_regularizer",
"tensorflow.variable_scope"
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Subsets and Splits