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Except block handles 'BaseException' | smailq/gitolite-manager/gitolite_manager/gitolite.py | [
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"content": " def rmSSHKey(self, username, keyname):\n\n key_file_name = self.__get_ssh_key_path(username, keyname)\n\n try:\n os.remove(key_file_name)\n except:\n return False\n\n return True",
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"index": 69
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Variable defined multiple times | nasa-gibs/onearth/src/scripts/SLDtoColorMap.py | [
{
"content": "def parseSLD_v1_1_0(sourceXml, layerName, units, offset, factor, rgbOrder, format, densify) :\n \n gibsColorMaps = []\n \n xmldoc = minidom.parse(sourceXml)\n\n #for childNode in xmldoc.documentElement.childNodes :\n for nlNode in xmldoc.documentElement.getElementsByTagName(\"NamedLayer\") :\n \n nameNode = nlNode.getElementsByTagName(\"se:Name\")[0]\n\n\n if nameNode.firstChild.nodeValue != layerName:\n break\n \n \n for userStyleNode in nlNode.getElementsByTagName(\"UserStyle\"):\n\n # <xsd:element ref=\"sld:Name\" minOccurs=\"0\"/>\n # <xsd:element ref=\"sld:Title\" minOccurs=\"0\"/>\n\n\n for rasterSymNode in userStyleNode.getElementsByTagName(\"se:RasterSymbolizer\"):\n # <xsd:element ref=\"sld:Name\" minOccurs=\"0\"/>\n # <xsd:element ref=\"sld:Title\" minOccurs=\"0\"/>\n \n defaultOpacity = rasterSymNode.getElementsByTagName(\"se:Opacity\")[0].firstChild.nodeValue\n \n colorMapNode = rasterSymNode.getElementsByTagName(\"se:ColorMap\")[0]\n categorizeNode = rasterSymNode.getElementsByTagName(\"se:Categorize\")[0]\n \n # <se:Categorize fallbackValue=\"#78c818\">\n attrDict = dict(categorizeNode.attributes.items())\n \n \n # Add a colormap for the no data value based on the fallbackValue\n if 'fallbackValue' in attrDict :\n hexValue = \"\"\n \n for c in \"RGB\":\n s = (-2 * rgbOrder[::-1].find(c)) -2\n e = (-2 * rgbOrder[::-1].find(c))\n e = e if e != 0 else None\n hexValue = hexValue + attrDict['fallbackValue'][s:e]\n \n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.rgb = hexToRGB(hexValue)\n gibsCMapEntry.transparent = True\n gibsCMapEntry.label = \"No Data\"\n gibsCMapEntry.nodata = True\n gibsCMapEntry.ref = 1\n \n gibsCMap = GIBS_ColorMap()\n gibsCMap.cmEntries = []\n gibsCMap.cmEntries.append(gibsCMapEntry)\n gibsColorMaps.append(gibsCMap)\n \n \n \n # Process the SLD entries into the XML ColorMap\n gibsCMap = GIBS_ColorMap()\n \n prevValue = sys.maxint\n prev2Value = sys.maxint\n currValue = sys.maxint\n firstValue = sys.maxint\n prevRGB = [-1,-1,-1]\n prev2RGB = [-1,-1,-1]\n currRGB = [-1,-1,-1]\n firstRGB = [-1,-1,-1]\n currRef = 1\n\n # Loop through the <Value> and <Threshold> elements\n for catChildNode in [ n for n in categorizeNode.childNodes if n.nodeType == Node.ELEMENT_NODE ]:\n \n # <se:Value>#00ff00</se:Value>\n if catChildNode.nodeName == \"se:Value\":\n currRGB = hexToRGB(catChildNode.firstChild.nodeValue)\n \n # <se:Threshold>52</se:Threshold>\n if catChildNode.nodeName == \"se:Threshold\":\n currValue = float(catChildNode.firstChild.nodeValue)\n \n # If prevValue is sys.maxint, then this is the first Threshold. Add a colormap entry for (-INF,currValue)\n if prevValue == sys.maxint:\n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.transparent = (defaultOpacity == 0.0)\n gibsCMapEntry.rgb = currRGB\n gibsCMapEntry.label = \"< \" + format.format(currValue) + (\"\" if not units else (\" \" + units))\n gibsCMapEntry.value = [\"-INF\", currValue]\n gibsCMapEntry.sourceValue = [\"-INF\", ((currValue - offset) / factor)]\n gibsCMapEntry.ref = currRef\n \n gibsCMap.cmEntries.append(gibsCMapEntry)\n gibsCMap.minLabel = \"< \" + format.format(currValue) + (\"\" if not units else (\" \" + units))\n \n currRef = currRef + 1\n \n # If not densifying, then add a Colormap entry for [prevValue, currValue)\n elif not densify:\n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.transparent = (defaultOpacity == 0.0)\n gibsCMapEntry.rgb = currRGB\n gibsCMapEntry.label = format.format(prevValue) + \" - \" + format.format(currValue) + (\"\" if not units else (\" \" + units))\t\n gibsCMapEntry.value = [prevValue, currValue]\n gibsCMapEntry.sourceValue = [((prevValue - offset) / factor), ((currValue - offset) / factor)]\n gibsCMapEntry.ref = currRef\n \n gibsCMap.cmEntries.append(gibsCMapEntry)\n \n currRef = currRef + 1\n \n # If densifying...\n else:\n m = re.match(r\"([sro])([0-9]*)\", densify)\n\n # \"Step\" Densification\n # Generate extra colormap entries for intermediate data values with visually\n # imperceptibly different colors from the previous data value and RGB to the \n # current data value and RGB. \n if m.group(1) == \"s\":\n #print(\"step data \" + str(prevValue) + \" - \" + str(currValue))\n #print(\"step color \" + str(prevRGB) + \" - \" + str(currRGB))\n \n colorSteps = stepDensify(currRGB, int(m.group(2)), 1)\n #print(colorSteps)\n\n dataSteps = dataDensify(prevValue, currValue, int(m.group(2)))\n #print(dataSteps)\n \n for step in range(0, int(m.group(2))):\n #print(dataSteps[step])\n #print(colorSteps[step])\n \n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.transparent = (defaultOpacity == 0.0)\n gibsCMapEntry.rgb = colorSteps[step]\n gibsCMapEntry.label = format.format(prevValue) + \" - \" + format.format(dataSteps[step]) + (\"\" if not units else (\" \" + units))\t\n gibsCMapEntry.value = [prevValue, dataSteps[step]]\n gibsCMapEntry.sourceValue = [((prevValue - offset) / factor), ((dataSteps[step] - offset) / factor)]\n gibsCMapEntry.ref = currRef\n\n gibsCMap.cmEntries.append(gibsCMapEntry)\n \n prevValue = dataSteps[step]\n \n currRef = currRef + 1\n \n # \"Ramp\" Densification\n # Generate extra colormap entries for intermediate data values with visibly different colors\n # from the previous RGB to the current RGB, but using the previous data range. This data\n # range lags behind the RGB range because we don't know which color to ramp to due to how the \n # <Threshold> values are read in the XML parsing.\n elif m.group(1) == \"r\" and prev2Value != sys.maxint: \n #print(\"ramp data \" + str(prev2Value) + \" - \" + str(prevValue))\n #print(\"ramp color \" + str(prevRGB) + \" - \" + str(currRGB))\n \n colorSteps = rampDensify(prevRGB, currRGB, int(m.group(2)) + 1)\n #print(colorSteps)\n\n dataSteps = dataDensify(prev2Value, prevValue, int(m.group(2)))\n #print(dataSteps)\n \n prevValue = prev2Value\n \n for step in range(0, int(m.group(2))):\n #print(dataSteps[step])\n #print(colorSteps[step])\n \n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.transparent = (defaultOpacity == 0.0)\n gibsCMapEntry.rgb = colorSteps[step]\n gibsCMapEntry.label = format.format(prevValue) + \" - \" + format.format(dataSteps[step]) + (\"\" if not units else (\" \" + units))\t\n gibsCMapEntry.value = [prevValue, dataSteps[step]]\n gibsCMapEntry.sourceValue = [((prevValue - offset) / factor), ((dataSteps[step] - offset) / factor)]\n gibsCMapEntry.ref = currRef\n\n gibsCMap.cmEntries.append(gibsCMapEntry)\n \n prevValue = dataSteps[step]\n \n currRef = currRef + 1\n\n # \"Override\" Densification\n # Capture the data value and RGB for the first entry for the first time through\n # and then just ignore it after that \n elif m.group(1) == \"o\" and firstValue == sys.maxint: \n firstValue = prevValue\n firstRGB = currRGB\n \n prev2Value = prevValue\n prevValue = currValue\n\n prev2RGB = prevRGB\n prevRGB = currRGB\n \n # End: Loop through the <Value> and <Threshold> elements\n # Now process the final color entry\n \n if densify:\n m = re.match(r\"([sro])([0-9]*)\", densify)\n\n # \"Ramp\" Densification\n # Because of the lagging <Threshold> parsing, we now need to add the last ramped\n # section of the colormap.\n if m.group(1) == \"r\":\n #print(\"ramp data \" + str(prev2Value) + \" - \" + str(prevValue))\n #print(\"ramp color \" + str(prevRGB) + \" - \" + str(currRGB))\n \n colorSteps = rampDensify(prevRGB, currRGB, int(m.group(2)) + 1)\n #print(colorSteps)\n\n dataSteps = dataDensify(prev2Value, prevValue, int(m.group(2)))\n #print(dataSteps)\n \n prevValue = prev2Value\n \n for step in range(0, int(m.group(2))):\n #print(dataSteps[step])\n #print(colorSteps[step])\n \n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.transparent = (defaultOpacity == 0.0)\n gibsCMapEntry.rgb = colorSteps[step]\n gibsCMapEntry.label = format.format(prevValue) + \" - \" + format.format(dataSteps[step]) + (\"\" if not units else (\" \" + units))\t\n gibsCMapEntry.value = [prevValue, dataSteps[step]]\n gibsCMapEntry.sourceValue = [((prevValue - offset) / factor), ((dataSteps[step] - offset) / factor)]\n gibsCMapEntry.ref = currRef\n\n gibsCMap.cmEntries.append(gibsCMapEntry)\n \n prevValue = dataSteps[step]\n \n currRef = currRef + 1\n \n # \"Override\" Densification\n # Create a ramp over the entire data range using the start and finish RGB values\n if m.group(1) == \"o\":\n #print(\"ramp data \" + str(firstValue) + \" - \" + str(prevValue))\n #print(\"ramp color \" + str(firstRGB) + \" - \" + str(currRGB))\n \n colorSteps = rampDensify(firstRGB, currRGB, int(m.group(2)) + 1)\n #print(colorSteps)\n\n dataSteps = dataDensify(firstValue, prevValue, int(m.group(2)))\n #print(dataSteps)\n \n prevValue = firstValue\n \n for step in range(0, int(m.group(2))):\n #print(dataSteps[step])\n #print(colorSteps[step])\n \n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.transparent = (defaultOpacity == 0.0)\n gibsCMapEntry.rgb = colorSteps[step]\n gibsCMapEntry.label = format.format(prevValue) + \" - \" + format.format(dataSteps[step]) + (\"\" if not units else (\" \" + units))\t\n gibsCMapEntry.value = [prevValue, dataSteps[step]]\n gibsCMapEntry.sourceValue = [((prevValue - offset) / factor), ((dataSteps[step] - offset) / factor)]\n gibsCMapEntry.ref = currRef\n\n gibsCMap.cmEntries.append(gibsCMapEntry)\n \n prevValue = dataSteps[step]\n currRef = currRef + 1\n \n\n # Add the final Colormap Entry for the [currValue, +INF) data range\n gibsCMapEntry = GIBS_ColorMapEntry()\n gibsCMapEntry.rgb = currRGB\n gibsCMapEntry.transparent = (defaultOpacity == 0.0)\n gibsCMapEntry.label = \">= \" + format.format(prevValue) + (\"\" if not units else (\" \" + units))\t\n gibsCMapEntry.value = [prevValue, \"+INF\"]\n gibsCMapEntry.sourceValue = [((prevValue - offset) / factor), \"+INF\"]\n gibsCMapEntry.ref = currRef\n \n gibsCMap.cmEntries.append(gibsCMapEntry)\n \n gibsCMap.maxLabel = \">= \" + format.format(prevValue) + (\"\" if not units else (\" \" + units))\t\n gibsCMap.showUnits = True\t\n gibsCMap.showLegend = True\n \n \tgibsColorMaps.append(gibsCMap)\n \t\n return gibsColorMaps",
"metadata": "root.parseSLD_v1_1_0",
"header": "['module', '___EOS___']",
"index": 291
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"content": "def generateColorMap(gibsColorMaps, units, format):\n\n print(\"<?xml version=\\\"1.0\\\" encoding=\\\"UTF-8\\\"?>\")\n print(\"<ColorMaps>\")\n \n for colorMap in gibsColorMaps:\n\n # <ColorMap title=\"Sea Ice Concentration\" units=\"%\">\n print(\" <ColorMap\" + \n ((\" units=\\\"\" + units + \"\\\"\") if colorMap.showUnits and units else \"\") + \">\")\n\n # <Entries minLabel=\"0 %\" maxLabel=\"100 %\"> \n print(\" <Entries\" + \n (\"\" if not colorMap.minLabel else (\" minLabel=\\\"\" + colorMap.minLabel + \"\\\" \")) + \n (\"\" if not colorMap.maxLabel else (\" maxLabel=\\\"\" + colorMap.maxLabel + \"\\\"\")) + \t\">\")\n \n for cMapEntry in colorMap.cmEntries:\n # <ColorMapEntry rgb=\"9,9,255\" transparent=\"false\" sourceValue=\"[9,10)\" value=\"[9,10)\" label=\"3.6 %\" ref=\"1\"/>\n \n rgb = str(cMapEntry.rgb[0]) + \",\" + str(cMapEntry.rgb[1]) + \",\" + str(cMapEntry.rgb[2])\n \n if cMapEntry.value: \n if len(cMapEntry.value) == 1:\n value = \"[\" + (cMapEntry.value[0] if isinstance(cMapEntry.value[0], str) else format.format(cMapEntry.value[0])) + \"]\"\n else:\n value = \"[\" + (cMapEntry.value[0] if isinstance(cMapEntry.value[0], str) else format.format(cMapEntry.value[0])) + \",\" + \\\n (cMapEntry.value[1] if isinstance(cMapEntry.value[1], str) else format.format(cMapEntry.value[1])) + \")\"\n \n if cMapEntry.sourceValue: \n if len(cMapEntry.sourceValue) == 1:\n sourceValue = \"[\" + (cMapEntry.sourceValue[0] if isinstance(cMapEntry.sourceValue[0], str) else format.format(cMapEntry.sourceValue[0])) + \"]\"\n else:\n sourceValue = \"[\" + (cMapEntry.sourceValue[0] if isinstance(cMapEntry.sourceValue[0], str) else format.format(cMapEntry.sourceValue[0])) + \",\" + \\\n (cMapEntry.sourceValue[1] if isinstance(cMapEntry.sourceValue[1], str) else format.format(cMapEntry.sourceValue[1])) + \")\"\n\n print(\" <ColorMapEntry rgb=\\\"\" + rgb + \"\\\" \" + \n \"transparent=\\\"\" + (\"true\" if cMapEntry.transparent else \"false\") + \"\\\" \" + \n (\"\" if not cMapEntry.sourceValue else (\"sourceValue=\\\"\" + value + \"\\\" \")) + \n (\"\" if not cMapEntry.value else (\"value=\\\"\" + value + \"\\\" \")) + \n \"label=\\\"\" + cMapEntry.label + \"\\\" \" + \n (\"\" if not cMapEntry.nodata else (\"nodata=\\\"true\\\" \")) +\n (\"\" if not colorMap.showLegend else (\"ref=\\\"\" + str(cMapEntry.ref) + \"\\\" \")) + \n \"/>\")\n\n print(\" </Entries>\")\n \n \n if colorMap.showLegend:\n # <Entries minLabel=\"0 %\" maxLabel=\"100 %\"> \n print(\" <Legend type=\\\"continuous\\\" \" + \n (\"\" if not colorMap.minLabel else (\" minLabel=\\\"\" + colorMap.minLabel + \"\\\" \")) + \n (\"\" if not colorMap.maxLabel else (\" maxLabel=\\\"\" + colorMap.maxLabel + \"\\\"\")) + \t\">\")\n \n \n prevRef = -1\n \n for cMapEntry in colorMap.cmEntries:\n \n if cMapEntry.ref != prevRef:\n rgb = str(cMapEntry.rgb[0]) + \",\" + str(cMapEntry.rgb[1]) + \",\" + str(cMapEntry.rgb[2])\n \n if cMapEntry.value: \n if len(cMapEntry.value) == 1:\n value = \"[\" + (cMapEntry.value[0] if isinstance(cMapEntry.value[0], str) else format.format(cMapEntry.value[0])) + \"]\"\n else:\n value = \"[\" + (cMapEntry.value[0] if isinstance(cMapEntry.value[0], str) else format.format(cMapEntry.value[0])) + \",\" + \\\n (cMapEntry.value[1] if isinstance(cMapEntry.value[1], str) else format.format(cMapEntry.value[1])) + \")\"\n \n print(\" <LegendEntry rgb=\\\"\" + rgb + \"\\\" \" + \n (\"\" if not colorMap.showLegend else (\"id=\\\"\" + str(cMapEntry.ref) + \"\\\" \")) + \"/>\")\n \n \n prevRef = cMapEntry.ref\n\n print(\" </Legend>\")\n \n print(\" </ColorMap>\")\n \n print(\"</ColorMaps>\")",
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|
Except block handles 'BaseException' | QuantSoftware/QuantSoftwareToolkit/Legacy/epydoc-3.0.1/epydoc/docwriter/html_colorize.py | [
{
"content": "#\n# epydoc.html: HTML colorizers\n# Edward Loper\n#\n# Created [10/16/02 09:49 PM]\n# $Id: html_colorize.py 1674 2008-01-29 06:03:36Z edloper $\n#\n\n\"\"\"\nFunctions to produce colorized HTML code for various objects.\nCurrently, C{html_colorize} defines functions to colorize\nPython source code.\n\"\"\"\n__docformat__ = 'epytext en'\n\nimport re, codecs\nfrom epydoc import log\nfrom epydoc.util import py_src_filename\nfrom epydoc.apidoc import *\nimport tokenize, token, cgi, keyword\ntry: from cStringIO import StringIO\nexcept: from StringIO import StringIO\n\n######################################################################\n## Python source colorizer\n######################################################################\n\"\"\"\nGoals:\n - colorize tokens appropriately (using css)\n - optionally add line numbers\n - \n\"\"\"\n\n#: Javascript code for the PythonSourceColorizer\nPYSRC_JAVASCRIPTS = '''\\\nfunction expand(id) {\n var elt = document.getElementById(id+\"-expanded\");\n if (elt) elt.style.display = \"block\";\n var elt = document.getElementById(id+\"-expanded-linenums\");\n if (elt) elt.style.display = \"block\";\n var elt = document.getElementById(id+\"-collapsed\");\n if (elt) { elt.innerHTML = \"\"; elt.style.display = \"none\"; }\n var elt = document.getElementById(id+\"-collapsed-linenums\");\n if (elt) { elt.innerHTML = \"\"; elt.style.display = \"none\"; }\n var elt = document.getElementById(id+\"-toggle\");\n if (elt) { elt.innerHTML = \"-\"; }\n}\n\nfunction collapse(id) {\n var elt = document.getElementById(id+\"-expanded\");\n if (elt) elt.style.display = \"none\";\n var elt = document.getElementById(id+\"-expanded-linenums\");\n if (elt) elt.style.display = \"none\";\n var elt = document.getElementById(id+\"-collapsed-linenums\");\n if (elt) { elt.innerHTML = \"<br />\"; elt.style.display=\"block\"; }\n var elt = document.getElementById(id+\"-toggle\");\n if (elt) { elt.innerHTML = \"+\"; }\n var elt = document.getElementById(id+\"-collapsed\");\n if (elt) {\n elt.style.display = \"block\";\n \n var indent = elt.getAttribute(\"indent\");\n var pad = elt.getAttribute(\"pad\");\n var s = \"<tt class=\\'py-lineno\\'>\";\n for (var i=0; i<pad.length; i++) { s += \" \" }\n s += \"</tt>\";\n s += \" <tt class=\\'py-line\\'>\";\n for (var i=0; i<indent.length; i++) { s += \" \" }\n s += \"<a href=\\'#\\' onclick=\\'expand(\\\\\"\" + id;\n s += \"\\\\\");return false\\'>...</a></tt><br />\";\n elt.innerHTML = s;\n }\n}\n\nfunction toggle(id) {\n elt = document.getElementById(id+\"-toggle\");\n if (elt.innerHTML == \"-\")\n collapse(id); \n else\n expand(id);\n return false;\n}\n\nfunction highlight(id) {\n var elt = document.getElementById(id+\"-def\");\n if (elt) elt.className = \"py-highlight-hdr\";\n var elt = document.getElementById(id+\"-expanded\");\n if (elt) elt.className = \"py-highlight\";\n var elt = document.getElementById(id+\"-collapsed\");\n if (elt) elt.className = \"py-highlight\";\n}\n\nfunction num_lines(s) {\n var n = 1;\n var pos = s.indexOf(\"\\\\n\");\n while ( pos > 0) {\n n += 1;\n pos = s.indexOf(\"\\\\n\", pos+1);\n }\n return n;\n}\n\n// Collapse all blocks that mave more than `min_lines` lines.\nfunction collapse_all(min_lines) {\n var elts = document.getElementsByTagName(\"div\");\n for (var i=0; i<elts.length; i++) {\n var elt = elts[i];\n var split = elt.id.indexOf(\"-\");\n if (split > 0)\n if (elt.id.substring(split, elt.id.length) == \"-expanded\")\n if (num_lines(elt.innerHTML) > min_lines)\n collapse(elt.id.substring(0, split));\n }\n}\n\nfunction expandto(href) {\n var start = href.indexOf(\"#\")+1;\n if (start != 0 && start != href.length) {\n if (href.substring(start, href.length) != \"-\") {\n collapse_all(4);\n pos = href.indexOf(\".\", start);\n while (pos != -1) {\n var id = href.substring(start, pos);\n expand(id);\n pos = href.indexOf(\".\", pos+1);\n }\n var id = href.substring(start, href.length);\n expand(id);\n highlight(id);\n }\n }\n}\n\nfunction kill_doclink(id) {\n var parent = document.getElementById(id);\n parent.removeChild(parent.childNodes.item(0));\n}\nfunction auto_kill_doclink(ev) {\n if (!ev) var ev = window.event;\n if (!this.contains(ev.toElement)) {\n var parent = document.getElementById(this.parentID);\n parent.removeChild(parent.childNodes.item(0));\n }\n}\n\nfunction doclink(id, name, targets_id) {\n var elt = document.getElementById(id);\n\n // If we already opened the box, then destroy it.\n // (This case should never occur, but leave it in just in case.)\n if (elt.childNodes.length > 1) {\n elt.removeChild(elt.childNodes.item(0));\n }\n else {\n // The outer box: relative + inline positioning.\n var box1 = document.createElement(\"div\");\n box1.style.position = \"relative\";\n box1.style.display = \"inline\";\n box1.style.top = 0;\n box1.style.left = 0;\n \n // A shadow for fun\n var shadow = document.createElement(\"div\");\n shadow.style.position = \"absolute\";\n shadow.style.left = \"-1.3em\";\n shadow.style.top = \"-1.3em\";\n shadow.style.background = \"#404040\";\n \n // The inner box: absolute positioning.\n var box2 = document.createElement(\"div\");\n box2.style.position = \"relative\";\n box2.style.border = \"1px solid #a0a0a0\";\n box2.style.left = \"-.2em\";\n box2.style.top = \"-.2em\";\n box2.style.background = \"white\";\n box2.style.padding = \".3em .4em .3em .4em\";\n box2.style.fontStyle = \"normal\";\n box2.onmouseout=auto_kill_doclink;\n box2.parentID = id;\n\n // Get the targets\n var targets_elt = document.getElementById(targets_id);\n var targets = targets_elt.getAttribute(\"targets\");\n var links = \"\";\n target_list = targets.split(\",\");\n for (var i=0; i<target_list.length; i++) {\n var target = target_list[i].split(\"=\");\n links += \"<li><a href=\\'\" + target[1] + \n \"\\' style=\\'text-decoration:none\\'>\" +\n target[0] + \"</a></li>\";\n }\n \n // Put it all together.\n elt.insertBefore(box1, elt.childNodes.item(0));\n //box1.appendChild(box2);\n box1.appendChild(shadow);\n shadow.appendChild(box2);\n box2.innerHTML =\n \"Which <b>\"+name+\"</b> do you want to see documentation for?\" +\n \"<ul style=\\'margin-bottom: 0;\\'>\" +\n links + \n \"<li><a href=\\'#\\' style=\\'text-decoration:none\\' \" +\n \"onclick=\\'kill_doclink(\\\\\"\"+id+\"\\\\\");return false;\\'>\"+\n \"<i>None of the above</i></a></li></ul>\";\n }\n return false;\n}\n'''\n\nPYSRC_EXPANDTO_JAVASCRIPT = '''\\\n<script type=\"text/javascript\">\n<!--\nexpandto(location.href);\n// -->\n</script>\n'''\n\n \n_HDR = '''\\\n<?xml version=\"1.0\" encoding=\"ascii\"?>\n <!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Transitional//EN\"\n \"DTD/xhtml1-transitional.dtd\">\n <html xmlns=\"http://www.w3.org/1999/xhtml\" xml:lang=\"en\" lang=\"en\">\n <head>\n <title>$title$</title>\n <link rel=\"stylesheet\" href=\"epydoc.css\" type=\"text/css\" />\n <script type=\"text/javascript\" src=\"epydoc.js\"></script>\n </head>\n \n <body bgcolor=\"white\" text=\"black\" link=\"blue\" vlink=\"#204080\"\n alink=\"#204080\">\n'''\n_FOOT = '</body></html>'\nif __name__=='__main__':\n #s = PythonSourceColorizer('../apidoc.py', 'epydoc.apidoc').colorize()\n s = PythonSourceColorizer('/tmp/fo.py', 'epydoc.apidoc').colorize()\n #print s\n import codecs\n f = codecs.open('/home/edloper/public_html/color3.html', 'w', 'ascii', 'xmlcharrefreplace')\n f.write(_HDR+'<pre id=\"py-src-top\" class=\"py-src\">'+s+'</pre>'+_FOOT)\n f.close()\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": " def __init__(self, module_filename, module_name,\n docindex=None, url_func=None, name_to_docs=None,\n tab_width=8):\n \"\"\"\n Create a new HTML colorizer for the specified module.\n\n @param module_filename: The name of the file containing the\n module; its text will be loaded from this file.\n @param module_name: The dotted name of the module; this will\n be used to create links back into the API source\n documentation.\n \"\"\"\n # Get the source version, if possible.\n try: module_filename = py_src_filename(module_filename)\n except: pass\n \n #: The filename of the module we're colorizing.\n self.module_filename = module_filename\n \n #: The dotted name of the module we're colorizing.\n self.module_name = module_name\n\n #: A docindex, used to create href links from identifiers to\n #: the API documentation for their values.\n self.docindex = docindex\n\n #: A mapping from short names to lists of ValueDoc, used to\n #: decide which values an identifier might map to when creating\n #: href links from identifiers to the API docs for their values.\n self.name_to_docs = name_to_docs\n \n #: A function that maps APIDoc -> URL, used to create href\n #: links from identifiers to the API documentation for their\n #: values.\n self.url_func = url_func\n\n #: The index in C{text} of the last character of the last\n #: token we've processed.\n self.pos = 0\n\n #: A list that maps line numbers to character offsets in\n #: C{text}. In particular, line C{M{i}} begins at character\n #: C{line_offset[i]} in C{text}. Since line numbers begin at\n #: 1, the first element of C{line_offsets} is C{None}.\n self.line_offsets = []\n\n #: A list of C{(toktype, toktext)} for all tokens on the\n #: logical line that we are currently processing. Once a\n #: complete line of tokens has been collected in C{cur_line},\n #: it is sent to L{handle_line} for processing.\n self.cur_line = []\n\n #: A list of the names of the class or functions that include\n #: the current block. C{context} has one element for each\n #: level of indentation; C{context[i]} is the name of the class\n #: or function defined by the C{i}th level of indentation, or\n #: C{None} if that level of indentation doesn't correspond to a\n #: class or function definition.\n self.context = []\n\n #: A list, corresponding one-to-one with L{self.context},\n #: indicating the type of each entry. Each element of\n #: C{context_types} is one of: C{'func'}, C{'class'}, C{None}.\n self.context_types = []\n\n #: A list of indentation strings for each of the current\n #: block's indents. I.e., the current total indentation can\n #: be found by taking C{''.join(self.indents)}.\n self.indents = []\n\n #: The line number of the line we're currently processing.\n self.lineno = 0\n\n #: The name of the class or function whose definition started\n #: on the previous logical line, or C{None} if the previous\n #: logical line was not a class or function definition.\n self.def_name = None\n\n #: The type of the class or function whose definition started\n #: on the previous logical line, or C{None} if the previous\n #: logical line was not a class or function definition.\n #: Can be C{'func'}, C{'class'}, C{None}.\n self.def_type = None\n\n #: The number of spaces to replace each tab in source code with\n self.tab_width = tab_width",
"metadata": "root.PythonSourceColorizer.__init__",
"header": "['class', 'PythonSourceColorizer', ':', '___EOS___']",
"index": 325
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Use of the return value of a procedure | msopentechcn/open-hackathon/open-hackathon-server/test/apitest/run.py | [
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Unused local variable | panoptes/POCS/scripts/read_weather.py | [
{
"content": "def make_safety_decision(cfg, logger=None):\n '''\n Method makes decision whether conditions are safe or unsafe.\n '''\n if logger:\n logger.info('Making safety decision')\n # If sky-amb > threshold, then cloudy (safe)\n if 'threshold_cloudy' in cfg.keys():\n threshold_cloudy = cfg['threshold_cloudy']\n else:\n if logger:\n logger.warning('Using default cloudy threshold')\n threshold_cloudy = -20\n # If sky-amb > threshold, then very cloudy (unsafe)\n if 'threshold_very_cloudy' in cfg.keys():\n threshold_very_cloudy = cfg['threshold_very_cloudy']\n else:\n if logger:\n logger.warning('Using default very cloudy threshold')\n threshold_very_cloudy = -15\n # If avg_wind > threshold, then windy (safe)\n if 'threshold_windy' in cfg.keys():\n threshold_windy = cfg['threshold_windy']\n else:\n if logger:\n logger.warning('Using default windy threshold')\n threshold_windy = 20\n # If avg_wind > threshold, then very windy (unsafe)\n if 'threshold_very_windy' in cfg.keys():\n threshold_very_windy = cfg['threshold_very_windy']\n else:\n if logger:\n logger.warning('Using default very windy threshold')\n threshold_very_windy = 30\n # If wind > threshold, then gusty (safe)\n if 'threshold_gusty' in cfg.keys():\n threshold_gusty = cfg['threshold_gusty']\n else:\n if logger:\n logger.warning('Using default gusty threshold')\n threshold_gusty = 40\n # If wind > threshold, then very gusty (unsafe)\n if 'threshold_very_gusty' in cfg.keys():\n threshold_very_gusty = cfg['threshold_very_gusty']\n else:\n if logger:\n logger.warning('Using default very gusty threshold')\n threshold_very_gusty = 50\n # If rain frequency < threshold, then unsafe\n if 'threshold_rainy' in cfg.keys():\n threshold_rain = cfg['threshold_rainy']\n else:\n if logger:\n logger.warning('Using default rain threshold')\n threshold_rain = 230\n\n # Get Last n minutes of data\n if 'safety_delay' in cfg.keys():\n safety_delay = cfg['safety_delay']\n else:\n if logger:\n logger.warning('Using default safety delay')\n safety_delay = 15.\n end = dt.utcnow()\n start = end - tdelta(0, int(safety_delay * 60))\n db = PanMongo()\n entries = [x for x in db.weather.find({'date': {'$gt': start, '$lt': end}})]\n if logger:\n logger.info(' Found {} weather data entries in last {:.0f} minutes'.format(len(entries), safety_delay))\n\n # Cloudiness\n sky_diff = [x['data']['Sky Temperature (C)'] - x['data']['Ambient Temperature (C)']\n for x in entries\n if 'Ambient Temperature (C)' in x['data'].keys() and 'Sky Temperature (C)' in x['data'].keys()]\n\n if len(sky_diff) == 0:\n if logger:\n logger.info(' UNSAFE: no sky tempeartures found')\n sky_safe = False\n cloud_condition = 'Unknown'\n else:\n if max(sky_diff) > threshold_very_cloudy:\n if logger:\n logger.info(' UNSAFE: Very cloudy in last {:.0f} min.'\n ' Max sky diff {:.1f} C'.format(safety_delay, max(sky_diff)))\n sky_safe = False\n else:\n sky_safe = True\n\n if sky_diff[-1] > threshold_very_cloudy:\n cloud_condition = 'Very Cloudy'\n elif sky_diff[-1] > threshold_cloudy:\n cloud_condition = 'Cloudy'\n else:\n cloud_condition = 'Clear'\n if logger:\n logger.info(' Cloud Condition: {} (Sky-Amb={:.1f} C)'.format(cloud_condition, sky_diff[-1]))\n\n # Wind (average and gusts)\n wind_speed = [x['data']['Wind Speed (km/h)']\n for x in entries\n if 'Wind Speed (km/h)' in x['data'].keys()]\n\n if len(wind_speed) == 0:\n if logger:\n logger.info(' UNSAFE: no wind speed readings found')\n wind_safe = False\n gust_safe = False\n wind_condition = 'Unknown'\n gust_condition = 'Unknown'\n else:\n typical_data_interval = (end - min([x['date'] for x in entries])).total_seconds() / len(entries)\n mavg_count = int(np.ceil(120. / typical_data_interval))\n wind_mavg = movingaverage(wind_speed, mavg_count)\n\n # Windy?\n if max(wind_mavg) > threshold_very_windy:\n if logger:\n logger.info(' UNSAFE: Very windy in last {:.0f} min.'\n ' Max wind speed {:.1f} kph'.format(safety_delay, max(wind_mavg)))\n wind_safe = False\n else:\n wind_safe = True\n if wind_mavg[-1] > threshold_very_windy:\n wind_condition = 'Very Windy'\n elif wind_mavg[-1] > threshold_windy:\n wind_condition = 'Windy'\n else:\n wind_condition = 'Calm'\n if logger:\n logger.info(' Wind Condition: {} ({:.1f} km/h)'.format(wind_condition, wind_mavg[-1]))\n\n # Gusty?\n if max(wind_speed) > threshold_very_gusty:\n if logger:\n logger.info(' UNSAFE: Very gusty in last {:.0f} min.'\n ' Max gust speed {:.1f} kph'.format(safety_delay, max(wind_speed)))\n gust_safe = False\n else:\n gust_safe = True\n if wind_speed[-1] > threshold_very_gusty:\n gust_condition = 'Very Gusty'\n elif wind_speed[-1] > threshold_windy:\n gust_condition = 'Gusty'\n else:\n gust_condition = 'Calm'\n if logger:\n logger.info(' Gust Condition: {} ({:.1f} km/h)'.format(gust_condition, wind_speed[-1]))\n\n # Rain\n rf_value = [x['data']['Rain Frequency']\n for x in entries\n if 'Rain Frequency' in x['data'].keys()]\n\n if len(rf_value) == 0:\n rain_safe = False\n rain_condition = 'Unknown'\n else:\n if min(rf_value) < threshold_rain:\n if logger:\n logger.info(' UNSAFE: Rain in last {:.0f} min.'.format(safety_delay))\n rain_safe = False\n else:\n rain_safe = True\n if rf_value[-1] < threshold_rain:\n rain_condition = 'Rain'\n else:\n rain_condition = 'Dry'\n if logger:\n logger.info(' Rain Condition: {}'.format(rain_condition))\n\n safe = sky_safe & wind_safe & gust_safe & rain_safe\n translator = {True: 'safe', False: 'unsafe'}\n if logger:\n logger.info('Weather is {}'.format(translator[safe]))\n\n safe_dict = {'Safe': safe,\n 'Sky': cloud_condition,\n 'Wind': wind_condition,\n 'Gust': gust_condition,\n 'Rain': rain_condition}\n return safe_dict",
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{
"content": "def plot_weather(date_string):\n import matplotlib as mpl\n mpl.use('Agg')\n from matplotlib import pyplot as plt\n from matplotlib.dates import HourLocator, MinuteLocator, DateFormatter\n plt.ioff()\n\n dpi = 100\n plt.figure(figsize=(16, 9), dpi=dpi)\n\n hours = HourLocator(byhour=range(24), interval=1)\n hours_fmt = DateFormatter('%H')\n mins = MinuteLocator(range(0, 60, 15))\n mins_fmt = DateFormatter('%H:%M')\n\n if not date_string:\n today = True\n date = dt.utcnow()\n date_string = date.strftime('%Y%m%dUT')\n else:\n today = False\n date = dt.strptime('{} 23:59:59'.format(date_string), '%Y%m%dUT %H:%M:%S')\n\n start = dt(date.year, date.month, date.day, 0, 0, 0, 0)\n end = dt(date.year, date.month, date.day, 23, 59, 59, 0)\n\n # ------------------------------------------------------------------------\n # determine sunrise and sunset times\n # ------------------------------------------------------------------------\n cfg = load_config()['location']\n loc = EarthLocation(\n lat=cfg['latitude'],\n lon=cfg['longitude'],\n height=cfg['elevation'],\n )\n obs = Observer(location=loc, name='PANOPTES', timezone=cfg['timezone'])\n\n sunset = obs.sun_set_time(Time(start), which='next').datetime\n evening_civil_twilight = obs.twilight_evening_civil(Time(start), which='next').datetime\n evening_nautical_twilight = obs.twilight_evening_nautical(Time(start), which='next').datetime\n evening_astronomical_twilight = obs.twilight_evening_astronomical(Time(start), which='next').datetime\n morning_astronomical_twilight = obs.twilight_morning_astronomical(Time(start), which='next').datetime\n morning_nautical_twilight = obs.twilight_morning_nautical(Time(start), which='next').datetime\n morning_civil_twilight = obs.twilight_morning_civil(Time(start), which='next').datetime\n sunrise = obs.sun_rise_time(Time(start), which='next').datetime\n\n print('start: {}'.format(Time(start)))\n print(obs.is_night(Time(start)))\n print('sunset: {}'.format(sunset))\n print('evening_civil_twilight: {}'.format(evening_civil_twilight))\n print('evening_nautical_twilight: {}'.format(evening_nautical_twilight))\n print('evening_astronomical_twilight: {}'.format(evening_astronomical_twilight))\n print('morning_astronomical_twilight: {}'.format(morning_astronomical_twilight))\n print('morning_nautical_twilight: {}'.format(morning_nautical_twilight))\n print('morning_civil_twilight: {}'.format(morning_civil_twilight))\n\n # -------------------------------------------------------------------------\n # Plot a day's weather\n # -------------------------------------------------------------------------\n plot_positions = [([0.000, 0.835, 0.700, 0.170], [0.720, 0.835, 0.280, 0.170]),\n ([0.000, 0.635, 0.700, 0.170], [0.720, 0.635, 0.280, 0.170]),\n ([0.000, 0.450, 0.700, 0.170], [0.720, 0.450, 0.280, 0.170]),\n ([0.000, 0.265, 0.700, 0.170], [0.720, 0.265, 0.280, 0.170]),\n ([0.000, 0.185, 0.700, 0.065], [0.720, 0.185, 0.280, 0.065]),\n ([0.000, 0.000, 0.700, 0.170], [0.720, 0.000, 0.280, 0.170]),\n ]\n\n # Connect to sensors collection\n db = PanMongo()\n entries = [x for x in db.weather.find({'date': {'$gt': start, '$lt': end}}).sort([('date', pymongo.ASCENDING)])]\n if today:\n current_values = [x for x in db.current.find({\"type\": \"weather\"})][0]\n else:\n current_values = None\n\n print('Plot Ambient Temperature vs. Time')\n # -------------------------------------------------------------------------\n # Plot Ambient Temperature vs. Time\n t_axes = plt.axes(plot_positions[0][0])\n if today:\n time_title = date\n else:\n time_title = end\n plt.title('Weather for {} at {}'.format(date_string, time_title.strftime('%H:%M:%S UT')))\n amb_temp = [x['data']['Ambient Temperature (C)']\n for x in entries\n if 'Ambient Temperature (C)' in x['data'].keys()]\n time = [x['date'] for x in entries\n if 'Ambient Temperature (C)' in x['data'].keys()]\n t_axes.plot_date(time, amb_temp, 'ko',\n markersize=2, markeredgewidth=0,\n drawstyle=\"default\")\n try:\n max_temp = max(amb_temp)\n min_temp = min(amb_temp)\n label_time = end - tdelta(0, 7 * 60 * 60)\n label_temp = 28\n t_axes.annotate('Low: {:4.1f} $^\\circ$C, High: {:4.1f} $^\\circ$C'.format(\n min_temp, max_temp),\n xy=(label_time, max_temp),\n xytext=(label_time, label_temp),\n size=16,\n )\n except:\n pass\n plt.ylabel(\"Ambient Temp. (C)\")\n plt.grid(which='major', color='k')\n plt.yticks(range(-100, 100, 10))\n plt.xlim(start, end)\n plt.ylim(-5, 35)\n t_axes.xaxis.set_major_locator(hours)\n t_axes.xaxis.set_major_formatter(hours_fmt)\n\n if obs.is_night(Time(start)):\n plt.axvspan(start, morning_astronomical_twilight, ymin=0, ymax=1, color='blue', alpha=0.5)\n plt.axvspan(morning_astronomical_twilight, morning_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n plt.axvspan(morning_nautical_twilight, morning_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n plt.axvspan(morning_civil_twilight, sunrise, ymin=0, ymax=1, color='blue', alpha=0.1)\n plt.axvspan(sunset, evening_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.1)\n plt.axvspan(evening_civil_twilight, evening_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n plt.axvspan(evening_nautical_twilight, evening_astronomical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n plt.axvspan(evening_astronomical_twilight, end, ymin=0, ymax=1, color='blue', alpha=0.5)\n else:\n plt.axvspan(sunset, evening_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.1)\n plt.axvspan(evening_civil_twilight, evening_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n plt.axvspan(evening_nautical_twilight, evening_astronomical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n plt.axvspan(evening_astronomical_twilight, morning_astronomical_twilight,\n ymin=0, ymax=1, color='blue', alpha=0.5)\n plt.axvspan(morning_astronomical_twilight, morning_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n plt.axvspan(morning_nautical_twilight, morning_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n plt.axvspan(morning_civil_twilight, sunrise, ymin=0, ymax=1, color='blue', alpha=0.1)\n\n tlh_axes = plt.axes(plot_positions[0][1])\n plt.title('Last Hour')\n tlh_axes.plot_date(time, amb_temp, 'ko',\n markersize=4, markeredgewidth=0,\n drawstyle=\"default\")\n try:\n current_amb_temp = current_values['data']['Ambient Temperature (C)']\n current_time = current_values['date']\n label_time = current_time - tdelta(0, 30 * 60)\n label_temp = 28 # current_amb_temp + 7\n tlh_axes.annotate('Currently: {:.1f} $^\\circ$C'.format(current_amb_temp),\n xy=(current_time, current_amb_temp),\n xytext=(label_time, label_temp),\n size=16,\n )\n except:\n pass\n plt.grid(which='major', color='k')\n plt.yticks(range(-100, 100, 10))\n tlh_axes.xaxis.set_major_locator(mins)\n tlh_axes.xaxis.set_major_formatter(mins_fmt)\n tlh_axes.yaxis.set_ticklabels([])\n plt.xlim(date - tdelta(0, 60 * 60), date + tdelta(0, 5 * 60))\n plt.ylim(-5, 35)\n\n print('Plot Temperature Difference vs. Time')\n # -------------------------------------------------------------------------\n # Plot Temperature Difference vs. Time\n td_axes = plt.axes(plot_positions[1][0])\n temp_diff = [x['data']['Sky Temperature (C)'] - x['data']['Ambient Temperature (C)']\n for x in entries\n if 'Sky Temperature (C)' in x['data'].keys() and 'Ambient Temperature (C)' in x['data'].keys() and 'Sky Condition' in x['data'].keys()]\n time = [x['date'] for x in entries\n if 'Sky Temperature (C)' in x['data'].keys() and 'Ambient Temperature (C)' in x['data'].keys() and 'Sky Condition' in x['data'].keys()]\n sky_condition = [x['data']['Sky Condition']\n for x in entries\n if 'Sky Temperature (C)' in x['data'].keys() and 'Ambient Temperature (C)' in x['data'].keys() and 'Sky Condition' in x['data'].keys()]\n td_axes.plot_date(time, temp_diff, 'ko-', label='Cloudiness',\n markersize=2, markeredgewidth=0,\n drawstyle=\"default\")\n td_axes.fill_between(time, -60, temp_diff, where=np.array(sky_condition) == 'Clear',\n color='green', alpha=0.5)\n td_axes.fill_between(time, -60, temp_diff, where=np.array(sky_condition) == 'Cloudy',\n color='yellow', alpha=0.5)\n td_axes.fill_between(time, -60, temp_diff, where=np.array(sky_condition) == 'Very Cloudy',\n color='red', alpha=0.5)\n plt.ylabel(\"Cloudiness\")\n plt.grid(which='major', color='k')\n plt.yticks(range(-100, 100, 10))\n plt.xlim(start, end)\n plt.ylim(-60, 10)\n td_axes.xaxis.set_major_locator(hours)\n td_axes.xaxis.set_major_formatter(hours_fmt)\n td_axes.xaxis.set_ticklabels([])\n\n tdlh_axes = plt.axes(plot_positions[1][1])\n tdlh_axes.plot_date(time, temp_diff, 'ko-', label='Cloudiness',\n markersize=4, markeredgewidth=0,\n drawstyle=\"default\")\n tdlh_axes.fill_between(time, -60, temp_diff, where=np.array(sky_condition) == 'Clear',\n color='green', alpha=0.5)\n tdlh_axes.fill_between(time, -60, temp_diff, where=np.array(sky_condition) == 'Cloudy',\n color='yellow', alpha=0.5)\n tdlh_axes.fill_between(time, -60, temp_diff, where=np.array(sky_condition) == 'Very Cloudy',\n color='red', alpha=0.5)\n plt.grid(which='major', color='k')\n plt.yticks(range(-100, 100, 10))\n plt.xlim(date - tdelta(0, 60 * 60), date + tdelta(0, 5 * 60))\n plt.ylim(-60, 10)\n tdlh_axes.xaxis.set_major_locator(mins)\n tdlh_axes.xaxis.set_major_formatter(mins_fmt)\n tdlh_axes.xaxis.set_ticklabels([])\n tdlh_axes.yaxis.set_ticklabels([])\n\n print('Plot Wind Speed vs. Time')\n # -------------------------------------------------------------------------\n # Plot Wind Speed vs. Time\n w_axes = plt.axes(plot_positions[2][0])\n wind_speed = [x['data']['Wind Speed (km/h)']\n for x in entries\n if 'Wind Speed (km/h)' in x['data'].keys() and\n 'Wind Condition' in x['data'].keys() and\n 'Gust Condition' in x['data'].keys()]\n wind_mavg = movingaverage(wind_speed, 10)\n trans = {'Calm': 0, 'Windy': 1, 'Gusty': 1, 'Very Windy': 10, 'Very Gusty': 10}\n wind_condition = [trans[x['data']['Wind Condition']] + trans[x['data']['Gust Condition']]\n for x in entries\n if 'Wind Speed (km/h)' in x['data'].keys() and\n 'Wind Condition' in x['data'].keys() and\n 'Gust Condition' in x['data'].keys()]\n time = [x['date'] for x in entries\n if 'Wind Speed (km/h)' in x['data'].keys() and\n 'Wind Condition' in x['data'].keys() and\n 'Gust Condition' in x['data'].keys()]\n w_axes.plot_date(time, wind_speed, 'ko', alpha=0.5,\n markersize=2, markeredgewidth=0,\n drawstyle=\"default\")\n w_axes.plot_date(time, wind_mavg, 'b-',\n label='Wind Speed',\n markersize=3, markeredgewidth=0,\n linewidth=3, alpha=0.5,\n drawstyle=\"default\")\n w_axes.plot_date([start, end], [0, 0], 'k-', ms=1)\n w_axes.fill_between(time, -5, wind_speed,\n where=np.array(wind_condition) == 0,\n color='green', alpha=0.5)\n w_axes.fill_between(time, -5, wind_speed,\n where=(np.array(wind_condition) > 0) & (np.array(wind_condition) < 10),\n color='yellow', alpha=0.5)\n w_axes.fill_between(time, -5, wind_speed,\n where=np.array(wind_condition) > 10,\n color='red', alpha=0.5)\n try:\n max_wind = max(wind_speed)\n label_time = end - tdelta(0, 6 * 60 * 60)\n label_wind = 61\n w_axes.annotate('Max Gust: {:.1f} (km/h)'.format(max_wind),\n xy=(label_time, max_wind),\n xytext=(label_time, label_wind),\n size=16,\n )\n except:\n pass\n plt.ylabel(\"Wind (km/h)\")\n plt.grid(which='major', color='k')\n plt.yticks(range(-100, 100, 10))\n plt.xlim(start, end)\n wind_max = max([45, np.ceil(max(wind_speed) / 5.) * 5.])\n plt.ylim(0, 75)\n w_axes.xaxis.set_major_locator(hours)\n w_axes.xaxis.set_major_formatter(hours_fmt)\n w_axes.xaxis.set_ticklabels([])\n\n wlh_axes = plt.axes(plot_positions[2][1])\n wlh_axes.plot_date(time, wind_speed, 'ko', alpha=0.7,\n markersize=4, markeredgewidth=0,\n drawstyle=\"default\")\n wlh_axes.plot_date(time, wind_mavg, 'b-',\n label='Wind Speed',\n markersize=2, markeredgewidth=0,\n linewidth=3, alpha=0.5,\n drawstyle=\"default\")\n wlh_axes.plot_date([start, end], [0, 0], 'k-', ms=1)\n wlh_axes.fill_between(time, -5, wind_speed,\n where=np.array(wind_condition) == 0,\n color='green', alpha=0.5)\n wlh_axes.fill_between(time, -5, wind_speed,\n where=(np.array(wind_condition) > 0) & (np.array(wind_condition) < 10),\n color='yellow', alpha=0.5)\n wlh_axes.fill_between(time, -5, wind_speed,\n where=np.array(wind_condition) > 10,\n color='red', alpha=0.5)\n try:\n current_wind = current_values['data']['Wind Speed (km/h)']\n current_time = current_values['date']\n label_time = current_time - tdelta(0, 30 * 60)\n label_wind = 61\n wlh_axes.annotate('Currently: {:.0f} km/h'.format(current_wind),\n xy=(current_time, current_wind),\n xytext=(label_time, label_wind),\n size=16,\n )\n except:\n pass\n plt.grid(which='major', color='k')\n plt.yticks(range(-100, 100, 10))\n plt.xlim(date - tdelta(0, 60 * 60), date + tdelta(0, 5 * 60))\n wind_max = max([45, np.ceil(max(wind_speed) / 5.) * 5.])\n plt.ylim(0, 75)\n wlh_axes.xaxis.set_major_locator(mins)\n wlh_axes.xaxis.set_major_formatter(mins_fmt)\n wlh_axes.xaxis.set_ticklabels([])\n wlh_axes.yaxis.set_ticklabels([])\n\n print('Plot Rain Frequency vs. Time')\n # -------------------------------------------------------------------------\n # Plot Rain Frequency vs. Time\n rf_axes = plt.axes(plot_positions[3][0])\n rf_value = [x['data']['Rain Frequency']\n for x in entries\n if 'Rain Frequency' in x['data'].keys() and\n 'Rain Condition' in x['data'].keys()]\n rain_condition = [x['data']['Rain Condition']\n for x in entries\n if 'Rain Frequency' in x['data'].keys() and\n 'Rain Condition' in x['data'].keys()]\n time = [x['date'] for x in entries\n if 'Rain Frequency' in x['data'].keys() and\n 'Rain Condition' in x['data'].keys()]\n rf_axes.plot_date(time, rf_value, 'ko-', label='Rain',\n markersize=2, markeredgewidth=0,\n drawstyle=\"default\")\n rf_axes.fill_between(time, 0, rf_value, where=np.array(rain_condition) == 'Dry',\n color='green', alpha=0.5)\n rf_axes.fill_between(time, 0, rf_value, where=np.array(rain_condition) == 'Rain',\n color='red', alpha=0.5)\n plt.ylabel(\"Rain Sensor\")\n plt.grid(which='major', color='k')\n plt.ylim(120, 275)\n plt.xlim(start, end)\n rf_axes.xaxis.set_major_locator(hours)\n rf_axes.xaxis.set_major_formatter(hours_fmt)\n rf_axes.xaxis.set_ticklabels([])\n rf_axes.yaxis.set_ticklabels([])\n\n rflh_axes = plt.axes(plot_positions[3][1])\n rflh_axes.plot_date(time, rf_value, 'ko-', label='Rain',\n markersize=4, markeredgewidth=0,\n drawstyle=\"default\")\n rflh_axes.fill_between(time, 0, rf_value, where=np.array(rain_condition) == 'Dry',\n color='green', alpha=0.5)\n rflh_axes.fill_between(time, 0, rf_value, where=np.array(rain_condition) == 'Rain',\n color='red', alpha=0.5)\n plt.grid(which='major', color='k')\n plt.ylim(120, 275)\n plt.xlim(date - tdelta(0, 60 * 60), date + tdelta(0, 5 * 60))\n rflh_axes.xaxis.set_major_locator(mins)\n rflh_axes.xaxis.set_major_formatter(mins_fmt)\n rflh_axes.xaxis.set_ticklabels([])\n rflh_axes.yaxis.set_ticklabels([])\n\n print('Plot Safe/Unsafe vs. Time')\n # -------------------------------------------------------------------------\n # Safe/Unsafe vs. Time\n safe_axes = plt.axes(plot_positions[4][0])\n safe_value = [int(x['data']['Safe'])\n for x in entries\n if 'Safe' in x['data'].keys()]\n safe_time = [x['date'] for x in entries\n if 'Safe' in x['data'].keys()]\n safe_axes.plot_date(safe_time, safe_value, 'ko',\n markersize=2, markeredgewidth=0,\n drawstyle=\"default\")\n safe_axes.fill_between(safe_time, -1, safe_value, where=np.array(safe_value) == 1,\n color='green', alpha=0.5)\n safe_axes.fill_between(safe_time, -1, safe_value, where=np.array(safe_value) == 0,\n color='red', alpha=0.5)\n plt.ylabel(\"Safe\")\n plt.xlim(start, end)\n plt.ylim(-0.1, 1.1)\n plt.yticks([0, 1])\n plt.grid(which='major', color='k')\n safe_axes.xaxis.set_major_locator(hours)\n safe_axes.xaxis.set_major_formatter(hours_fmt)\n safe_axes.xaxis.set_ticklabels([])\n safe_axes.yaxis.set_ticklabels([])\n\n safelh_axes = plt.axes(plot_positions[4][1])\n safelh_axes.plot_date(safe_time, safe_value, 'ko-',\n markersize=4, markeredgewidth=0,\n drawstyle=\"default\")\n safelh_axes.fill_between(safe_time, -1, safe_value, where=np.array(safe_value) == 1,\n color='green', alpha=0.5)\n safelh_axes.fill_between(safe_time, -1, safe_value, where=np.array(safe_value) == 0,\n color='red', alpha=0.5)\n plt.ylim(-0.1, 1.1)\n plt.yticks([0, 1])\n plt.grid(which='major', color='k')\n plt.xlim(date - tdelta(0, 60 * 60), date + tdelta(0, 5 * 60))\n safelh_axes.xaxis.set_major_locator(mins)\n safelh_axes.xaxis.set_major_formatter(mins_fmt)\n safelh_axes.xaxis.set_ticklabels([])\n safelh_axes.yaxis.set_ticklabels([])\n\n print('Plot PWM Value vs. Time')\n # -------------------------------------------------------------------------\n # Plot PWM Value vs. Time\n pwm_axes = plt.axes(plot_positions[5][0])\n plt.ylabel(\"Heater (%)\")\n plt.ylim(-5, 105)\n plt.yticks([0, 25, 50, 75, 100])\n plt.xlim(start, end)\n plt.grid(which='major', color='k')\n rst_axes = pwm_axes.twinx()\n plt.ylim(-1, 21)\n plt.xlim(start, end)\n pwm_value = [x['data']['PWM Value']\n for x in entries\n if 'PWM Value' in x['data'].keys() and\n 'Rain Sensor Temp (C)' in x['data'].keys() and\n 'Ambient Temperature (C)' in x['data'].keys()]\n rst_delta = [x['data']['Rain Sensor Temp (C)'] - x['data']['Ambient Temperature (C)']\n for x in entries\n if 'PWM Value' in x['data'].keys() and\n 'Rain Sensor Temp (C)' in x['data'].keys() and\n 'Ambient Temperature (C)' in x['data'].keys()]\n time = [x['date'] for x in entries\n if 'PWM Value' in x['data'].keys() and\n 'Rain Sensor Temp (C)' in x['data'].keys() and\n 'Ambient Temperature (C)' in x['data'].keys()]\n rst_axes.plot_date(time, rst_delta, 'ro-', alpha=0.5,\n label='RST Delta (C)',\n markersize=2, markeredgewidth=0,\n drawstyle=\"default\")\n pwm_axes.plot_date(time, pwm_value, 'bo', label='Heater',\n markersize=2, markeredgewidth=0,\n drawstyle=\"default\")\n pwm_axes.xaxis.set_major_locator(hours)\n pwm_axes.xaxis.set_major_formatter(hours_fmt)\n\n pwmlh_axes = plt.axes(plot_positions[5][1])\n plt.ylim(-5, 105)\n plt.yticks([0, 25, 50, 75, 100])\n plt.xlim(date - tdelta(0, 60 * 60), date + tdelta(0, 5 * 60))\n plt.grid(which='major', color='k')\n rstlh_axes = pwmlh_axes.twinx()\n plt.ylim(-1, 21)\n plt.xlim(date - tdelta(0, 60 * 60), date + tdelta(0, 5 * 60))\n rstlh_axes.plot_date(time, rst_delta, 'ro-', alpha=0.5,\n label='RST Delta (C)',\n markersize=4, markeredgewidth=0,\n drawstyle=\"default\")\n rstlh_axes.xaxis.set_ticklabels([])\n rstlh_axes.yaxis.set_ticklabels([])\n pwmlh_axes.plot_date(time, pwm_value, 'bo', label='Heater',\n markersize=4, markeredgewidth=0,\n drawstyle=\"default\")\n pwmlh_axes.xaxis.set_major_locator(mins)\n pwmlh_axes.xaxis.set_major_formatter(mins_fmt)\n pwmlh_axes.yaxis.set_ticklabels([])\n\n # -------------------------------------------------------------------------\n # Plot Brightness vs. Time\n# ldr_axes = plt.axes(plot_positions[3][0])\n# max_ldr = 28587999.99999969\n# ldr_value = [x['data']['LDR Resistance (ohm)']\\\n# for x in entries\\\n# if 'LDR Resistance (ohm)' in x['data'].keys()]\n# brightness = [10.**(2. - 2.*x/max_ldr) for x in ldr_value]\n# time = [x['date'] for x in entries\\\n# if 'LDR Resistance (ohm)' in x['data'].keys()]\n# ldr_axes.plot_date(time, brightness, 'ko',\\\n# markersize=2, markeredgewidth=0,\\\n# drawstyle=\"default\")\n# plt.ylabel(\"Brightness (%)\")\n# plt.yticks(range(-100,100,10))\n# plt.ylim(-5,105)\n# plt.grid(which='major', color='k')\n# ldr_axes.xaxis.set_major_locator(hours)\n# ldr_axes.xaxis.set_major_formatter(hours_fmt)\n# plt.xlim(start, end)\n#\n# if obs.is_night(start):\n# plt.axvspan(start, morning_astronomical_twilight, ymin=0, ymax=1, color='blue', alpha=0.5)\n# plt.axvspan(morning_astronomical_twilight, morning_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n# plt.axvspan(morning_nautical_twilight, morning_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n# plt.axvspan(morning_civil_twilight, sunrise, ymin=0, ymax=1, color='blue', alpha=0.1)\n# plt.axvspan(sunset, evening_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.1)\n# plt.axvspan(evening_civil_twilight, evening_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n# plt.axvspan(evening_nautical_twilight, evening_astronomical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n# plt.axvspan(evening_astronomical_twilight, end, ymin=0, ymax=1, color='blue', alpha=0.5)\n# else:\n# plt.axvspan(sunset, evening_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.1)\n# plt.axvspan(evening_civil_twilight, evening_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n# plt.axvspan(evening_nautical_twilight, evening_astronomical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n# plt.axvspan(evening_astronomical_twilight, morning_astronomical_twilight, ymin=0, ymax=1, color='blue', alpha=0.5)\n# plt.axvspan(morning_astronomical_twilight, morning_nautical_twilight, ymin=0, ymax=1, color='blue', alpha=0.3)\n# plt.axvspan(morning_nautical_twilight, morning_civil_twilight, ymin=0, ymax=1, color='blue', alpha=0.2)\n# plt.axvspan(morning_civil_twilight, sunrise, ymin=0, ymax=1, color='blue', alpha=0.1)\n\n # -------------------------------------------------------------------------\n plot_filename = '{}.png'.format(date_string)\n plot_file = os.path.expanduser('/var/panoptes/weather_plots/{}'.format(plot_filename))\n print('Save Figure: {}'.format(plot_file))\n plt.savefig(plot_file, dpi=dpi, bbox_inches='tight', pad_inches=0.10)\n # Link\n today_name = '/var/panoptes/weather_plots/today.png'\n if os.path.exists(today_name):\n os.remove(today_name)\n\n os.symlink(plot_file, today_name)",
"metadata": "root.plot_weather",
"header": "['module', '___EOS___']",
"index": 1022
}
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Module is imported more than once | statsmodels/statsmodels/statsmodels/sandbox/gam.py | [
{
"content": "\"\"\"\nGeneralized additive models\n\n\n\nRequirements for smoothers\n--------------------------\n\nsmooth(y, weights=xxx) : ? no return ? alias for fit\npredict(x=None) : smoothed values, fittedvalues or for new exog\ndf_fit() : degress of freedom of fit ?\n\n\nNotes\n-----\n- using PolySmoother works for AdditiveModel, and GAM with Poisson and Binomial\n- testfailure with Gamma, no other families tested\n- there is still an indeterminacy in the split up of the constant across\n components (smoothers) and alpha, sum, i.e. constant, looks good.\n - role of offset, that I haven't tried to figure out yet\n\nRefactoring\n-----------\ncurrently result is attached to model instead of other way around\nsplit up Result in class for AdditiveModel and for GAM,\nsubclass GLMResults, needs verification that result statistics are appropriate\nhow much inheritance, double inheritance?\nrenamings and cleanup\ninterface to other smoothers, scipy splines\n\nbasic unittests as support for refactoring exist, but we should have a test\ncase for gamma and the others. Advantage of PolySmoother is that we can\nbenchmark against the parametric GLM results.\n\n\"\"\"\n\n# JP:\n# changes: use PolySmoother instead of crashing bspline\n# TODO: check/catalogue required interface of a smoother\n# TODO: replace default smoother by corresponding function to initialize\n# other smoothers\n# TODO: fix iteration, don't define class with iterator methods, use looping;\n# add maximum iteration and other optional stop criteria\n# fixed some of the dimension problems in PolySmoother,\n# now graph for example looks good\n# NOTE: example script is now in examples folder\n#update: I did some of the above, see module docstring\n\nfrom statsmodels.compat.python import next, range\nimport numpy as np\n\nfrom statsmodels.genmod import families\nfrom statsmodels.sandbox.nonparametric.smoothers import PolySmoother\nfrom statsmodels.genmod.generalized_linear_model import GLM\nfrom statsmodels.tools.sm_exceptions import IterationLimitWarning, iteration_limit_doc\n\nimport warnings\n\nDEBUG = False\n\n\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": " def predict(self, exog):\n '''predict response, sum of smoothed components\n TODO: What's this in the case of GLM, corresponds to X*beta ?\n '''\n #note: sum is here over axis=0,\n #TODO: transpose in smoothed and sum over axis=1\n\n #BUG: there is some inconsistent orientation somewhere\n #temporary hack, won't work for 1d\n #print dir(self)\n #print 'self.nobs, self.k_vars', self.nobs, self.k_vars\n exog_smoothed = self.smoothed(exog)\n #print 'exog_smoothed.shape', exog_smoothed.shape\n if exog_smoothed.shape[0] == self.k_vars:\n import warnings\n warnings.warn(\"old orientation, colvars, will go away\",\n FutureWarning)\n return np.sum(self.smoothed(exog), axis=0) + self.alpha\n if exog_smoothed.shape[1] == self.k_vars:\n return np.sum(exog_smoothed, axis=1) + self.alpha\n else:\n raise ValueError('shape mismatch in predict')",
"metadata": "root.Results.predict",
"header": "['class', 'Results', '(', 'object', ')', ':', '___EOS___']",
"index": 136
},
{
"content": " def fit(self, Y, rtol=1.0e-06, maxiter=30):\n\n self.rtol = rtol\n self.maxiter = maxiter\n\n self.Y = np.asarray(Y, np.float64)\n\n self.history = []\n\n #iter(self)\n self._iter__()\n\n #TODO code duplication with next?\n alpha = self.Y.mean()\n mu0 = self.family.starting_mu(Y)\n #Z = self.family.link(alpha) + self.family.link.deriv(alpha) * (Y - alpha)\n Z = self.family.link(alpha) + self.family.link.deriv(alpha) * (Y - mu0)\n m = AdditiveModel(self.exog, smoothers=self.smoothers, family=self.family)\n self.results = m.fit(Z)\n self.results.mu = self.family.link.inverse(self.results.predict(self.exog))\n self.results.Y = Y\n\n while self.cont():\n self.results = self.next()\n self.scale = self.results.scale = self.estimate_scale()\n\n if self.iter >= self.maxiter:\n import warnings\n warnings.warn(iteration_limit_doc, IterationLimitWarning)\n\n return self.results",
"metadata": "root.Model.fit",
"header": "['class', 'Model', '(', 'GLM', ',', 'AdditiveModel', ')', ':', '___NEWLINE___', '#class Model(AdditiveModel):', '___NL___', '#TODO: what does GLM do? Is it actually used ?', '___NL___', \"#only used in __init__, dropping it doesn't change results\", '___NL___', \"#but where gets family attached now? - weird, it's Gaussian in this case now\", '___NL___', '#also where is the link defined?', '___NL___', '#AdditiveModel overwrites family and sets it to Gaussian - corrected', '___NL___', '___NL___', '#I think both GLM and AdditiveModel subclassing is only used in __init__', '___NL___', '___NL___', '#niter = 2', '___NL___', '___NL___', '# def __init__(self, exog, smoothers=None, family=family.Gaussian()):', '___NL___', '# GLM.__init__(self, exog, family=family)', '___NL___', '# AdditiveModel.__init__(self, exog, smoothers=smoothers)', '___NL___', '# self.family = family', '___NL___', '___EOS___']",
"index": 403
}
]
| [
{
"span": "import warnings",
"start_line": 150,
"start_column": 12,
"end_line": 150,
"end_column": 27
},
{
"span": "import warnings",
"start_line": 430,
"start_column": 12,
"end_line": 430,
"end_column": 27
}
]
| [
{
"span": "import warnings",
"start_line": 56,
"start_column": 0,
"end_line": 56,
"end_column": 15
}
]
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Except block handles 'BaseException' | tarmstrong/nbdiff/nbdiff/server/command/MergeURLCommand.py | [
{
"content": " def process(self, request, filename, db_session):\n errMsg = \"\"\n parser = NotebookParser()\n # Max Size of a notebook accepted is 20M.\n max_size = 20*1024*1024\n\n try:\n localURL = request.form['localURL']\n baseURL = request.form['baseURL']\n remoteURL = request.form['remoteURL']\n except BadRequestKeyError:\n errMsg = \"\"\"Invalid notebook Merge Request.\n <br/>Please return to the home page and\n submit the request again.\"\"\"\n return render_template('Error.html', err=errMsg)\n\n try:\n localFile = urllib2.urlopen(localURL)\n if int(localFile.info()['Content-Length']) > max_size:\n errMsg = errMsg + \"\"\"The Local notebook\n exceeds 20MB. Only notebooks below\n 20MB are accepted.<br/>\"\"\"\n except:\n errMsg = errMsg + \"\"\"We are unable to access\n the Local notebook file from the\n given URL.<br/>\"\"\"\n\n try:\n baseFile = urllib2.urlopen(baseURL)\n if int(baseFile.info()['Content-Length']) > max_size:\n errMsg = errMsg + \"\"\"The Base notebook\n exceeds 20MB. Only notebooks below\n 20MB are accepted.<br/>\"\"\"\n except:\n errMsg = errMsg + \"\"\"We are unable to access\n the Base notebook file from the given\n URL.<br/>\"\"\"\n\n try:\n remoteFile = urllib2.urlopen(remoteURL)\n if int(remoteFile.info()['Content-Length']) > max_size:\n errMsg = errMsg + \"\"\"The Remote notebook\n exceeds 20MB. Only notebooks below\n 20MB are accepted.<br/>\"\"\"\n except:\n errMsg = errMsg + \"\"\"We are unable to access\n the Remote notebook file from\n the given URL.<br/>\"\"\"\n\n if len(errMsg) == 0:\n try:\n nb_local = parser.parse(localFile)\n except nbformat.NotJSONError:\n errMsg = errMsg + \"\"\"The Local notebook\n contains invalid JSON data. <br/>\"\"\"\n try:\n nb_base = parser.parse(baseFile)\n except nbformat.NotJSONError:\n errMsg = errMsg + \"\"\"The Base notebook\n contains invalid JSON data. <br/>\"\"\"\n try:\n nb_remote = parser.parse(remoteFile)\n except nbformat.NotJSONError:\n errMsg = errMsg + \"\"\"The Remote notebook\n contains invalid JSON data. <br/>\"\"\"\n\n localFile.close()\n baseFile.close()\n remoteFile.close()\n\n if len(errMsg) == 0:\n mergedNotebook = notebook_merge(nb_local, nb_base, nb_remote)\n\n # bitarray used to convert notebook to binary for BLOB\n ba = bitarray.bitarray()\n ba.fromstring(json.dumps(mergedNotebook, indent=2))\n\n # object to be saved to database\n obj = nbdiffModel(ba.to01())\n\n # add to database and commit it.\n try:\n db_session.add(obj)\n db_session.commit()\n except OperationalError:\n db_session.rollback()\n print \"\"\"The database is not initialized.\n Please restart server with argument init_db\"\"\"\n errMsg = \"\"\"There was an error with the database. <br/>\n Please contact administrator to resolve this issue.\"\"\"\n return render_template('Error.html', err=errMsg)\n except:\n db_session.rollback()\n errMsg = \"\"\"There was an unexpected error with the database.\n <br/>Please try again later. <br/>\n If this problem persists please contact administrator.\"\"\"\n return render_template('Error.html', err=errMsg)\n\n # return the id of the object.\n nb_id = obj.id\n\n # redirect is used because we want users\n # to have a easier url to return to.\n return redirect(\"/Comparison/\"+str(nb_id), code=302)\n else:\n return render_template('Error.html', err=errMsg)",
"metadata": "root.MergeURLCommand.process",
"header": "['class', 'MergeURLCommand', '(', 'BaseCommand', ')', ':', '___EOS___']",
"index": 15
}
]
| [
{
"span": "except:",
"start_line": 37,
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"end_column": 15
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{
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{
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"end_column": 15
},
{
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Unused import | linkfloyd/linkfloyd/linkfloyd/channels/migrations/0004_auto__del_field_channel_parent_channel__add_field_channel_parent.py | [
{
"content": "# encoding: utf-8\nimport datetime\nfrom south.db import db\nfrom south.v2 import SchemaMigration\nfrom django.db import models\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
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"content": "class Migration(SchemaMigration):\n\n\n\n\n\n models = {\n 'auth.group': {\n 'Meta': {'object_name': 'Group'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),\n 'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Permission']\", 'symmetrical': 'False', 'blank': 'True'})\n },\n 'auth.permission': {\n 'Meta': {'ordering': \"('content_type__app_label', 'content_type__model', 'codename')\", 'unique_together': \"(('content_type', 'codename'),)\", 'object_name': 'Permission'},\n 'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['contenttypes.ContentType']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})\n },\n 'auth.user': {\n 'Meta': {'object_name': 'User'},\n 'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime(2012, 7, 24, 6, 41, 19, 219645)'}),\n 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),\n 'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),\n 'groups': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Group']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime(2012, 7, 24, 6, 41, 19, 219531)'}),\n 'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),\n 'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),\n 'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Permission']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})\n },\n 'channels.channel': {\n 'Meta': {'object_name': 'Channel'},\n 'description': ('django.db.models.fields.CharField', [], {'max_length': \"'255'\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_official': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['channels.Language']\"}),\n 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '255'}),\n 'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),\n 'parent': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['channels.Channel']\", 'null': 'True', 'blank': 'True'}),\n 'slug': ('django.db.models.fields.SlugField', [], {'unique': 'True', 'max_length': '255', 'db_index': 'True'})\n },\n 'channels.language': {\n 'Meta': {'object_name': 'Language'},\n 'code': ('django.db.models.fields.CharField', [], {'max_length': '5', 'null': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '16'})\n },\n 'channels.subscription': {\n 'Meta': {'unique_together': \"(('user', 'channel'),)\", 'object_name': 'Subscription'},\n 'channel': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['channels.Channel']\"}),\n 'email_frequency': ('django.db.models.fields.CharField', [], {'default': \"'daily'\", 'max_length': '12'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'status': ('django.db.models.fields.CharField', [], {'default': \"'member'\", 'max_length': '12'}),\n 'user': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'channel_subscriptions'\", 'to': \"orm['auth.User']\"})\n },\n 'contenttypes.contenttype': {\n 'Meta': {'ordering': \"('name',)\", 'unique_together': \"(('app_label', 'model'),)\", 'object_name': 'ContentType', 'db_table': \"'django_content_type'\"},\n 'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})\n }\n }\n\n complete_apps = ['channels']",
"metadata": "root.Migration",
"header": "['module', '___EOS___']",
"index": 6
},
{
"content": " def forwards(self, orm):\n \n # Deleting field 'Channel.parent_channel'\n db.delete_column('channels_channel', 'parent_channel_id')\n\n # Adding field 'Channel.parent'\n db.add_column('channels_channel', 'parent', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['channels.Channel'], null=True, blank=True), keep_default=False)",
"metadata": "root.Migration.forwards",
"header": "['class', 'Migration', '(', 'SchemaMigration', ')', ':', '___EOS___']",
"index": 8
},
{
"content": " def backwards(self, orm):\n \n # Adding field 'Channel.parent_channel'\n db.add_column('channels_channel', 'parent_channel', self.gf('django.db.models.fields.related.ForeignKey')(to=orm['channels.Channel'], null=True, blank=True), keep_default=False)\n\n # Deleting field 'Channel.parent'\n db.delete_column('channels_channel', 'parent_id')",
"metadata": "root.Migration.backwards",
"header": "['class', 'Migration', '(', 'SchemaMigration', ')', ':', '___EOS___']",
"index": 17
}
]
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Unused import | hycis/Pynet/pynet/datasets/i2r.py | [
{
"content": "\n\nimport matplotlib.pyplot as plt\n\nimport logging\nlogger = logging.getLogger(__name__)\nimport os\nimport numpy as np\nimport theano\n\nfrom pynet.datasets.dataset import SingleBlock, DataBlocks\nfrom pynet.utils.utils import make_one_hot\n\n\n\n\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class I2R_Posterior_Blocks_ClnDNN_CleanFeat(DataBlocks):\n\n",
"metadata": "root.I2R_Posterior_Blocks_ClnDNN_CleanFeat",
"header": "['module', '___EOS___']",
"index": 16
},
{
"content": " def __init__(self, feature_size, target_size, **kwargs):\n\n \"\"\"\n DESCRIPTION:\n This is class for processing blocks of data.\n PARAM:\n data_paths(list): contains the paths to the numpy data files. It's a\n list of tuples whereby the first element of the tuple\n is the X path, and the second is the y path.\n \"\"\"\n dir = '/home/stuwzhz/datasets/spectral-features/npy2'\n self.data_paths = [('%s/ClnDNN_CleanFeat.post_%.3d.npy'%(dir,i), '%s/onehot_clean.pdf_%.3d.npy'%(dir,i)) for i in xrange(1)]\n\n\n super(I2R_Posterior_Blocks_ClnDNN_CleanFeat, self).__init__(feature_size=feature_size,\n target_size=target_size,\n data_paths=self.data_paths,\n **kwargs)",
"metadata": "root.I2R_Posterior_Blocks_ClnDNN_CleanFeat.__init__",
"header": "['class', 'I2R_Posterior_Blocks_ClnDNN_CleanFeat', '(', 'DataBlocks', ')', ':', '___EOS___']",
"index": 19
},
{
"content": "class I2R_Posterior_Blocks_ClnDNN_NoisyFeat(DataBlocks):\n\n",
"metadata": "root.I2R_Posterior_Blocks_ClnDNN_NoisyFeat",
"header": "['module', '___EOS___']",
"index": 38
},
{
"content": " def __init__(self, feature_size, target_size, one_hot=True, num_blocks=30, **kwargs):\n\n \"\"\"\n DESCRIPTION:\n This is class for processing blocks of data.\n PARAM:\n data_paths(list): contains the paths to the numpy data files. It's a\n list of tuples whereby the first element of the tuple\n is the X path, and the second is the y path.\n \"\"\"\n dir = '/scratch/stuwzhz/dataset/npy'\n if one_hot:\n self.data_paths = [('%s/ClnDNN_NoisyFeat.post_%.3d.npy'%(dir,i), '%s/onehot_clean.pdf_%.3d.npy'%(dir,i)) for i in xrange(num_blocks)]\n else:\n self.data_paths = [('%s/ClnDNN_NoisyFeat.post_%.3d.npy'%(dir,i), '%s/clean.pdf_%.3d.npy'%(dir,i)) for i in xrange(num_blocks)]\n super(I2R_Posterior_Blocks_ClnDNN_NoisyFeat, self).__init__(feature_size=feature_size,\n target_size=target_size,\n data_paths=self.data_paths,\n **kwargs)",
"metadata": "root.I2R_Posterior_Blocks_ClnDNN_NoisyFeat.__init__",
"header": "['class', 'I2R_Posterior_Blocks_ClnDNN_NoisyFeat', '(', 'DataBlocks', ')', ':', '___EOS___']",
"index": 41
},
{
"content": "class I2R_Posterior_Gaussian_Noisy_Sample(SingleBlock):\n",
"metadata": "root.I2R_Posterior_Gaussian_Noisy_Sample",
"header": "['module', '___EOS___']",
"index": 61
},
{
"content": " def __init__(self, **kwargs):\n dir = '/home/stuwzhz/datasets/spectral-features/npy2'\n\n with open('%s/sample_y.npy'%dir) as yin:\n y = np.load(yin)\n y_tmp = []\n for e in y:\n if e > 150:\n y_tmp.append(e)\n\n y_tmp = np.asarray(y_tmp)\n y_tmp = make_one_hot(y_tmp, 1998)\n\n super(I2R_Posterior_Gaussian_Noisy_Sample, self).__init__(X=y_tmp, y=y_tmp, **kwargs)",
"metadata": "root.I2R_Posterior_Gaussian_Noisy_Sample.__init__",
"header": "['class', 'I2R_Posterior_Gaussian_Noisy_Sample', '(', 'SingleBlock', ')', ':', '___EOS___']",
"index": 63
},
{
"content": "class I2R_Posterior_NoisyFeat_Sample(SingleBlock):\n",
"metadata": "root.I2R_Posterior_NoisyFeat_Sample",
"header": "['module', '___EOS___']",
"index": 78
},
{
"content": " def __init__(self, **kwargs):\n dir = '/home/stuwzhz/datasets/spectral-features/npy2'\n\n with open('%s/sample_y.npy'%dir) as yin, \\\n open('%s/sample_X.npy'%dir) as Xin:\n y = np.load(yin)\n y = make_one_hot(y, 1998)\n X = np.load(Xin)\n\n super(I2R_Posterior_NoisyFeat_Sample, self).__init__(X=X, y=y, **kwargs)",
"metadata": "root.I2R_Posterior_NoisyFeat_Sample.__init__",
"header": "['class', 'I2R_Posterior_NoisyFeat_Sample', '(', 'SingleBlock', ')', ':', '___EOS___']",
"index": 80
}
]
| [
{
"span": "import matplotlib.pyplot as plt",
"start_line": 2,
"start_column": 0,
"end_line": 2,
"end_column": 31
},
{
"span": "import os",
"start_line": 6,
"start_column": 0,
"end_line": 6,
"end_column": 9
},
{
"span": "import theano",
"start_line": 8,
"start_column": 0,
"end_line": 8,
"end_column": 13
}
]
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|
Unused import | karesansui/karesansui/karesansui/gadget/guestby1currentsnapshot.py | [
{
"content": "# -*- coding: utf-8 -*-\n#\n# This file is part of Karesansui.\n#\n# Copyright (C) 2009-2012 HDE, Inc.\n#\n# Permission is hereby granted, free of charge, to any person obtaining a copy\n# of this software and associated documentation files (the \"Software\"), to deal\n# in the Software without restriction, including without limitation the rights\n# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell\n# copies of the Software, and to permit persons to whom the Software is\n# furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included in\n# all copies or substantial portions of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\n# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\n# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\n# THE SOFTWARE.\n#\n\nimport os\n\nimport web\nimport simplejson as json\n\nimport karesansui\nfrom karesansui.lib.rest import Rest, auth\nfrom karesansui.lib.const import VIRT_COMMAND_APPLY_SNAPSHOT\nfrom karesansui.lib.utils import is_param, is_int\n\nfrom karesansui.lib.virt.snapshot import KaresansuiVirtSnapshot\n\nfrom karesansui.db.access.machine import findbyguest1\nfrom karesansui.db.access.snapshot import findbyname_guestby1 as s_findbyname_guestby1\nfrom karesansui.db.access._2pysilhouette import save_job_collaboration\nfrom karesansui.db.access.machine2jobgroup import new as m2j_new\n\nfrom karesansui.db.model._2pysilhouette import Job, JobGroup\nfrom pysilhouette.command import dict2command\n\n\nurls = (\n '/host/(\\d+)/guest/(\\d+)/currentsnapshot/?(\\.part)?$', GuestBy1CurrentSnapshot,\n )\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class GuestBy1CurrentSnapshot(Rest):\n",
"metadata": "root.GuestBy1CurrentSnapshot",
"header": "['module', '___EOS___']",
"index": 45
},
{
"content": " @auth\n def _PUT(self, *param, **params):\n (host_id, guest_id) = self.chk_guestby1(param)\n if guest_id is None: return web.notfound()\n\n if is_param(self.input, 'id') is False \\\n or is_int(self.input.id) is False:\n return web.badrequest(\"Request data is invalid.\")\n\n snapshot_id = str(self.input.id)\n\n snapshot = s_findbyname_guestby1(self.orm, snapshot_id, guest_id)\n if snapshot is None:\n pass\n # ignore snapshots that is not in database.\n #return web.badrequest(\"Request data is invalid.\")\n\n model = findbyguest1(self.orm, guest_id)\n\n kvs = KaresansuiVirtSnapshot(readonly=False)\n snapshot_list = []\n try:\n domname = kvs.kvc.uuid_to_domname(model.uniq_key)\n if not domname: return web.notfound()\n self.view.is_creatable = kvs.isSupportedDomain(domname)\n try:\n snapshot_list = kvs.listNames(domname)[domname]\n except:\n pass\n\n finally:\n kvs.finish()\n\n if not snapshot_id in snapshot_list:\n self.logger.debug(_(\"The specified snapshot does not exist in database. - %s\") % snapshot_id)\n # ignore snapshots that is not in database.\n #return web.notfound()\n\n action_cmd = dict2command(\n \"%s/%s\" % (karesansui.config['application.bin.dir'],\n VIRT_COMMAND_APPLY_SNAPSHOT),\n {\"name\" : domname, \"id\" : snapshot_id})\n\n cmdname = 'Apply Snapshot'\n\n _jobgroup = JobGroup(cmdname, karesansui.sheconf['env.uniqkey'])\n _job = Job('%s command' % cmdname, 0, action_cmd)\n _jobgroup.jobs.append(_job)\n\n _machine2jobgroup = m2j_new(machine=model,\n jobgroup_id=-1,\n uniq_key=karesansui.sheconf['env.uniqkey'],\n created_user=self.me,\n modified_user=self.me,\n )\n \n save_job_collaboration(self.orm,\n self.pysilhouette.orm,\n _machine2jobgroup,\n _jobgroup,\n ) \n\n self.view.currentsnapshot = snapshot\n\n return web.accepted(url=web.ctx.path)",
"metadata": "root.GuestBy1CurrentSnapshot._PUT",
"header": "['class', 'GuestBy1CurrentSnapshot', '(', 'Rest', ')', ':', '___EOS___']",
"index": 47
}
]
| [
{
"span": "import os",
"start_line": 25,
"start_column": 0,
"end_line": 25,
"end_column": 9
},
{
"span": "import simplejson as json",
"start_line": 28,
"start_column": 0,
"end_line": 28,
"end_column": 25
}
]
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|
Imprecise assert | Crystalnix/omaha-server/omaha_server/omaha/tests/test_views.py | [
{
"content": " @temporary_media_root(MEDIA_URL='http://cache.pack.google.com/edgedl/chrome/install/782.112/')\n @patch('omaha.models.version_upload_to', lambda o, f: f)\n def test_userid_counting(self):\n now = datetime.utcnow()\n userid = '{D0BBD725-742D-44ae-8D46-0231E881D58E}'\n user_id = get_id(userid)\n appid1 = '{430FD4D0-B729-4F61-AA34-91526481799D}'\n appid2 = '{D0AB2EBC-931B-4013-9FEB-C9C4C2225C8C}'\n install_date = datetime(year=2014, month=1, day=1, hour=15, minute=41, second=48)\n update_date = install_date + timedelta(days=31)\n\n request_events = DayEvents('request', install_date.year, install_date.month, install_date.day)\n app1_install_events = DayEvents('new_install:%s' % appid1, install_date.year, install_date.month, install_date.day)\n app2_install_events = DayEvents('new_install:%s' % appid2, install_date.year, install_date.month, install_date.day)\n app1_update_events = DayEvents('request:%s' % appid1, update_date.year, update_date.month, update_date.day)\n app2_update_events = DayEvents('request:%s' % appid2, update_date.year, update_date.month, update_date.day)\n\n self.assertEqual(len(request_events), 0)\n self.assertEqual(len(app1_install_events), 0)\n self.assertEqual(len(app2_install_events), 0)\n\n app = ApplicationFactory.create(id='{D0AB2EBC-931B-4013-9FEB-C9C4C2225C8C}', name='chrome')\n platform = PlatformFactory.create(name='win')\n channel = ChannelFactory.create(name='stable')\n obj = VersionFactory.create(\n app=app,\n platform=platform,\n channel=channel,\n version='13.0.782.112',\n file=SimpleUploadedFile('./chrome_installer.exe', b'_' * 23963192))\n obj.file_hash = 'VXriGUVI0TNqfLlU02vBel4Q3Zo='\n obj.save()\n\n Action.objects.create(\n version=obj,\n arguments='--do-not-launch-chrome',\n event=EVENT_DICT_CHOICES['install'],\n run='chrome_installer.exe'\n )\n\n Action.objects.create(\n version=obj,\n event=EVENT_DICT_CHOICES['postinstall'],\n other=dict(\n version='13.0.782.112',\n onsuccess='exitsilentlyonlaunchcmd',\n )\n )\n\n with freeze_time(install_date): # 56508 sec\n self.client.post(reverse('update'),\n fixtures.request_update_check, content_type='text/xml')\n\n self.assertEqual(len(request_events), 1)\n self.assertEqual(len(app1_install_events), 1)\n self.assertEqual(len(app2_install_events), 1)\n self.assertTrue(user_id in request_events)\n self.assertTrue(user_id in app1_install_events)\n self.assertTrue(user_id in app2_install_events)\n\n with freeze_time(update_date):\n self.client.post(reverse('update'),\n fixtures.request_update_check, content_type='text/xml')\n\n self.assertEqual(len(app1_update_events), 1)\n self.assertEqual(len(app2_update_events), 1)\n self.assertTrue(user_id in app1_update_events)\n self.assertTrue(user_id in app2_update_events)",
"metadata": "root.UpdateViewTest.test_userid_counting",
"header": "['class', 'UpdateViewTest', '(', 'TestCase', ',', 'XmlTestMixin', ')', ':', '___EOS___']",
"index": 101
}
]
| [
{
"span": "self.assertTrue(user_id in request_events)",
"start_line": 157,
"start_column": 8,
"end_line": 157,
"end_column": 50
},
{
"span": "self.assertTrue(user_id in app1_install_events)",
"start_line": 158,
"start_column": 8,
"end_line": 158,
"end_column": 55
},
{
"span": "self.assertTrue(user_id in app2_install_events)",
"start_line": 159,
"start_column": 8,
"end_line": 159,
"end_column": 55
},
{
"span": "self.assertTrue(user_id in app1_update_events)",
"start_line": 167,
"start_column": 8,
"end_line": 167,
"end_column": 54
},
{
"span": "self.assertTrue(user_id in app2_update_events)",
"start_line": 168,
"start_column": 8,
"end_line": 168,
"end_column": 54
}
]
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|
Unused import | rwl/muntjac/muntjac/demo/sampler/features/dates/__init__.py | [
{
"content": "\nfrom muntjac.demo.sampler.features.dates.DateLocale import DateLocale\nfrom muntjac.demo.sampler.features.dates.DatePopupInputPrompt import DatePopupInputPrompt\nfrom muntjac.demo.sampler.features.dates.DateInline import DateInline\nfrom muntjac.demo.sampler.features.dates.DatePopup import DatePopup\nfrom muntjac.demo.sampler.features.dates.DateResolution import DateResolution\nfrom muntjac.demo.sampler.features.dates.DatePopupKeyboardNavigation import DatePopupKeyboardNavigation\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
}
]
| [
{
"span": "from muntjac.demo.sampler.features.dates.DateLocale import DateLocale",
"start_line": 1,
"start_column": 0,
"end_line": 1,
"end_column": 69
},
{
"span": "from muntjac.demo.sampler.features.dates.DatePopupInputPrompt import DatePopupInputPrompt",
"start_line": 2,
"start_column": 0,
"end_line": 2,
"end_column": 89
},
{
"span": "from muntjac.demo.sampler.features.dates.DateInline import DateInline",
"start_line": 3,
"start_column": 0,
"end_line": 3,
"end_column": 69
},
{
"span": "from muntjac.demo.sampler.features.dates.DatePopup import DatePopup",
"start_line": 4,
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First parameter of a method is not named 'self' | CollabQ/CollabQ/.google_appengine/google/appengine/ext/db/polymodel.py | [
{
"content": " def __init__(cls, name, bases, dct):\n \"\"\"Initializes a class that belongs to a polymorphic hierarchy.\n\n This method configures a few built-in attributes of polymorphic\n models:\n\n __root_class__: If the new class is a root class, __root_class__ is set to\n itself so that it subclasses can quickly know what the root of\n their hierarchy is and what kind they are stored in.\n __class_hierarchy__: List of classes describing the new model's place\n in the class hierarchy in reverse MRO order. The first element is\n always the root class while the last element is always the new class.\n\n MRO documentation: http://www.python.org/download/releases/2.3/mro/\n\n For example:\n class Foo(PolymorphicClass): ...\n\n class Bar(Foo): ...\n\n class Baz(Bar): ...\n\n Foo.__class_hierarchy__ == [Foo]\n Bar.__class_hierarchy__ == [Foo, Bar]\n Baz.__class_hierarchy__ == [Foo, Bar, Baz]\n\n Unless the class is a root class or PolyModel itself, it is not\n inserted in to the kind-map like other models. However, all polymorphic\n classes, are inserted in to the class-map which maps the class-key to\n implementation. This class key is consulted using the polymorphic instances\n discriminator (the 'class' property of the entity) when loading from the\n datastore.\n \"\"\"\n if name == 'PolyModel':\n super(PolymorphicClass, cls).__init__(name, bases, dct, map_kind=False)\n return\n\n elif PolyModel in bases:\n if getattr(cls, '__class_hierarchy__', None):\n raise db.ConfigurationError(('%s cannot derive from PolyModel as '\n '__class_hierarchy__ is already defined.') % cls.__name__)\n cls.__class_hierarchy__ = [cls]\n cls.__root_class__ = cls\n super(PolymorphicClass, cls).__init__(name, bases, dct)\n else:\n super(PolymorphicClass, cls).__init__(name, bases, dct, map_kind=False)\n\n cls.__class_hierarchy__ = [c for c in reversed(cls.mro())\n if issubclass(c, PolyModel) and c != PolyModel]\n\n if cls.__class_hierarchy__[0] != cls.__root_class__:\n raise db.ConfigurationError(\n '%s cannot be derived from both root classes %s and %s' %\n (cls.__name__,\n cls.__class_hierarchy__[0].__name__,\n cls.__root_class__.__name__))\n\n _class_map[cls.class_key()] = cls",
"metadata": "root.PolymorphicClass.__init__",
"header": "['class', 'PolymorphicClass', '(', 'db', '.', 'PropertiedClass', ')', ':', '___EOS___']",
"index": 79
}
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Unused import | Calysto/metakernel/metakernel/magics/tests/test_jigsaw_magic.py | [
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"content": "def test_jigsaw_magic():\n kernel = get_kernel(EvalKernel)\n kernel.do_execute(\"%jigsaw Processing --workspace workspace1\")\n text = get_log_text(kernel)\n assert os.path.isfile(\"workspace1.html\"), \"File does not exist: workspace1.html\"",
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Unused local variable | yyuu/botornado/botornado/sqs/queue.py | [
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Unused import | myles/django-basic-tumblelog/src/tumblelog/templatetags/tumblelog_tags.py | [
{
"content": "\"\"\"\nCopyright 2009 Myles Braithwaite <[email protected]>\n\nLicensed under the Apache License, Version 2.0 (the \"License\");\nyou may not use this file except in compliance with the License.\nYou may obtain a copy of the License at\n\n http://www.apache.org/licenses/LICENSE-2.0\n\nUnless required by applicable law or agreed to in writing, software\ndistributed under the License is distributed on an \"AS IS\" BASIS,\nWITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\nSee the License for the specific language governing permissions and\nlimitations under the License.\n\"\"\"\nimport re\nfrom django.contrib.contenttypes.models import ContentType\nfrom django import template\nfrom django.conf import settings\nfrom django.template.loader import select_template\n\nfrom tumblelog.models import Post\n\nregister = template.Library()\n\n\nregister.filter('render_item', render_item)\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
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},
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"content": "def render_item(item, template_name=None):\n model_name = item.content_object._meta.verbose_name_raw\n\n template_list = [template_name,] if template_name else []\n template_list.extend([\n 'tumblelog/includes/%(model)s.html' % {'model': model_name },\n 'tumblelog/includes/default.html'\n ])\n\n t = select_template(template_list)\n\n return t.render(template.Context({\n 'object' : item.content_object,\n 'object_id' : item.id,\n 'content_type' : item.content_type,\n 'item': item,\n 'MEDIA_URL': settings.MEDIA_URL\n }))",
"metadata": "root.render_item",
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"metadata": "root.LatestPosts",
"header": "['module', '___EOS___']",
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"content": " def __init__(self, limit, var_name):\n self.limit = limit\n self.var_name = var_name",
"metadata": "root.LatestPosts.__init__",
"header": "['class', 'LatestPosts', '(', 'template', '.', 'Node', ')', ':', '___EOS___']",
"index": 47
},
{
"content": " def render(self, context):\n posts = Post.objects.published()[:int(self.limit)]\n if posts and (int(self.limit) == 1):\n context[self.var_name] = posts[0]\n else:\n context[self.var_name] = posts\n return ''",
"metadata": "root.LatestPosts.render",
"header": "['class', 'LatestPosts', '(', 'template', '.', 'Node', ')', ':', '___EOS___']",
"index": 51
},
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"content": "@register.tag\ndef get_latest_posts(parser, token):\n \"\"\"\n Gets any number of latest posts and stores them in a varable.\n\n Syntax::\n\n {% get_latest_posts [limit] as [var_name] %}\n\n Example usage::\n\n {% get_latest_posts 10 as latest_post_list %}\n \"\"\"\n try:\n tag_name, arg = token.contents.split(None, 1)\n except ValueError:\n raise template.TemplateSyntaxError, \"%s tag requires arguments\" % token.contents.split()[0]\n m = re.search(r'(.*?) as (\\w+)', arg)\n if not m:\n raise template.TemplateSyntaxError, \"%s tag had invalid arguments\" % tag_name\n format_string, var_name = m.groups()\n return LatestPosts(format_string, var_name)",
"metadata": "root.get_latest_posts",
"header": "['module', '___EOS___']",
"index": 60
}
]
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{
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"start_line": 16,
"start_column": 0,
"end_line": 16,
"end_column": 58
}
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Variable defined multiple times | AppScale/appscale/AppServer/lib/django-0.96/django/core/management.py | [
{
"content": "def get_validation_errors(outfile, app=None):\n \"\"\"\n Validates all models that are part of the specified app. If no app name is provided,\n validates all models of all installed apps. Writes errors, if any, to outfile.\n Returns number of errors.\n \"\"\"\n from django.conf import settings\n from django.db import models, connection\n from django.db.models.loading import get_app_errors\n from django.db.models.fields.related import RelatedObject\n\n e = ModelErrorCollection(outfile)\n\n for (app_name, error) in get_app_errors().items():\n e.add(app_name, error)\n\n for cls in models.get_models(app):\n opts = cls._meta\n\n # Do field-specific validation.\n for f in opts.fields:\n if f.name == 'id' and not f.primary_key and opts.pk.name == 'id':\n e.add(opts, '\"%s\": You can\\'t use \"id\" as a field name, because each model automatically gets an \"id\" field if none of the fields have primary_key=True. You need to either remove/rename your \"id\" field or add primary_key=True to a field.' % f.name)\n if isinstance(f, models.CharField) and f.maxlength in (None, 0):\n e.add(opts, '\"%s\": CharFields require a \"maxlength\" attribute.' % f.name)\n if isinstance(f, models.FloatField):\n if f.decimal_places is None:\n e.add(opts, '\"%s\": FloatFields require a \"decimal_places\" attribute.' % f.name)\n if f.max_digits is None:\n e.add(opts, '\"%s\": FloatFields require a \"max_digits\" attribute.' % f.name)\n if isinstance(f, models.FileField) and not f.upload_to:\n e.add(opts, '\"%s\": FileFields require an \"upload_to\" attribute.' % f.name)\n if isinstance(f, models.ImageField):\n try:\n from PIL import Image\n except ImportError:\n e.add(opts, '\"%s\": To use ImageFields, you need to install the Python Imaging Library. Get it at http://www.pythonware.com/products/pil/ .' % f.name)\n if f.prepopulate_from is not None and type(f.prepopulate_from) not in (list, tuple):\n e.add(opts, '\"%s\": prepopulate_from should be a list or tuple.' % f.name)\n if f.choices:\n if not hasattr(f.choices, '__iter__'):\n e.add(opts, '\"%s\": \"choices\" should be iterable (e.g., a tuple or list).' % f.name)\n else:\n for c in f.choices:\n if not type(c) in (tuple, list) or len(c) != 2:\n e.add(opts, '\"%s\": \"choices\" should be a sequence of two-tuples.' % f.name)\n if f.db_index not in (None, True, False):\n e.add(opts, '\"%s\": \"db_index\" should be either None, True or False.' % f.name)\n\n # Check that maxlength <= 255 if using older MySQL versions.\n if settings.DATABASE_ENGINE == 'mysql':\n db_version = connection.get_server_version()\n if db_version < (5, 0, 3) and isinstance(f, (models.CharField, models.CommaSeparatedIntegerField, models.SlugField)) and f.maxlength > 255:\n e.add(opts, '\"%s\": %s cannot have a \"maxlength\" greater than 255 when you are using a version of MySQL prior to 5.0.3 (you are using %s).' % (f.name, f.__class__.__name__, '.'.join([str(n) for n in db_version[:3]])))\n\n # Check to see if the related field will clash with any\n # existing fields, m2m fields, m2m related objects or related objects\n if f.rel:\n rel_opts = f.rel.to._meta\n if f.rel.to not in models.get_models():\n e.add(opts, \"'%s' has relation with model %s, which has not been installed\" % (f.name, rel_opts.object_name))\n\n rel_name = RelatedObject(f.rel.to, cls, f).get_accessor_name()\n rel_query_name = f.related_query_name()\n for r in rel_opts.fields:\n if r.name == rel_name:\n e.add(opts, \"Accessor for field '%s' clashes with field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n if r.name == rel_query_name:\n e.add(opts, \"Reverse query name for field '%s' clashes with field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n for r in rel_opts.many_to_many:\n if r.name == rel_name:\n e.add(opts, \"Accessor for field '%s' clashes with m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n if r.name == rel_query_name:\n e.add(opts, \"Reverse query name for field '%s' clashes with m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n for r in rel_opts.get_all_related_many_to_many_objects():\n if r.get_accessor_name() == rel_name:\n e.add(opts, \"Accessor for field '%s' clashes with related m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n if r.get_accessor_name() == rel_query_name:\n e.add(opts, \"Reverse query name for field '%s' clashes with related m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n for r in rel_opts.get_all_related_objects():\n if r.field is not f:\n if r.get_accessor_name() == rel_name:\n e.add(opts, \"Accessor for field '%s' clashes with related field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n if r.get_accessor_name() == rel_query_name:\n e.add(opts, \"Reverse query name for field '%s' clashes with related field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n\n\n for i, f in enumerate(opts.many_to_many):\n # Check to see if the related m2m field will clash with any\n # existing fields, m2m fields, m2m related objects or related objects\n rel_opts = f.rel.to._meta\n if f.rel.to not in models.get_models():\n e.add(opts, \"'%s' has m2m relation with model %s, which has not been installed\" % (f.name, rel_opts.object_name))\n\n rel_name = RelatedObject(f.rel.to, cls, f).get_accessor_name()\n rel_query_name = f.related_query_name()\n # If rel_name is none, there is no reverse accessor.\n # (This only occurs for symmetrical m2m relations to self).\n # If this is the case, there are no clashes to check for this field, as\n # there are no reverse descriptors for this field.\n if rel_name is not None:\n for r in rel_opts.fields:\n if r.name == rel_name:\n e.add(opts, \"Accessor for m2m field '%s' clashes with field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n if r.name == rel_query_name:\n e.add(opts, \"Reverse query name for m2m field '%s' clashes with field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n for r in rel_opts.many_to_many:\n if r.name == rel_name:\n e.add(opts, \"Accessor for m2m field '%s' clashes with m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n if r.name == rel_query_name:\n e.add(opts, \"Reverse query name for m2m field '%s' clashes with m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.name, f.name))\n for r in rel_opts.get_all_related_many_to_many_objects():\n if r.field is not f:\n if r.get_accessor_name() == rel_name:\n e.add(opts, \"Accessor for m2m field '%s' clashes with related m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n if r.get_accessor_name() == rel_query_name:\n e.add(opts, \"Reverse query name for m2m field '%s' clashes with related m2m field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n for r in rel_opts.get_all_related_objects():\n if r.get_accessor_name() == rel_name:\n e.add(opts, \"Accessor for m2m field '%s' clashes with related field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n if r.get_accessor_name() == rel_query_name:\n e.add(opts, \"Reverse query name for m2m field '%s' clashes with related field '%s.%s'. Add a related_name argument to the definition for '%s'.\" % (f.name, rel_opts.object_name, r.get_accessor_name(), f.name))\n\n # Check admin attribute.\n if opts.admin is not None:\n if not isinstance(opts.admin, models.AdminOptions):\n e.add(opts, '\"admin\" attribute, if given, must be set to a models.AdminOptions() instance.')\n else:\n # list_display\n if not isinstance(opts.admin.list_display, (list, tuple)):\n e.add(opts, '\"admin.list_display\", if given, must be set to a list or tuple.')\n else:\n for fn in opts.admin.list_display:\n try:\n f = opts.get_field(fn)\n except models.FieldDoesNotExist:\n if not hasattr(cls, fn):\n e.add(opts, '\"admin.list_display\" refers to %r, which isn\\'t an attribute, method or property.' % fn)\n else:\n if isinstance(f, models.ManyToManyField):\n e.add(opts, '\"admin.list_display\" doesn\\'t support ManyToManyFields (%r).' % fn)\n # list_display_links\n if opts.admin.list_display_links and not opts.admin.list_display:\n e.add(opts, '\"admin.list_display\" must be defined for \"admin.list_display_links\" to be used.')\n if not isinstance(opts.admin.list_display_links, (list, tuple)):\n e.add(opts, '\"admin.list_display_links\", if given, must be set to a list or tuple.')\n else:\n for fn in opts.admin.list_display_links:\n try:\n f = opts.get_field(fn)\n except models.FieldDoesNotExist:\n if not hasattr(cls, fn):\n e.add(opts, '\"admin.list_display_links\" refers to %r, which isn\\'t an attribute, method or property.' % fn)\n if fn not in opts.admin.list_display:\n e.add(opts, '\"admin.list_display_links\" refers to %r, which is not defined in \"admin.list_display\".' % fn)\n # list_filter\n if not isinstance(opts.admin.list_filter, (list, tuple)):\n e.add(opts, '\"admin.list_filter\", if given, must be set to a list or tuple.')\n else:\n for fn in opts.admin.list_filter:\n try:\n f = opts.get_field(fn)\n except models.FieldDoesNotExist:\n e.add(opts, '\"admin.list_filter\" refers to %r, which isn\\'t a field.' % fn)\n # date_hierarchy\n if opts.admin.date_hierarchy:\n try:\n f = opts.get_field(opts.admin.date_hierarchy)\n except models.FieldDoesNotExist:\n e.add(opts, '\"admin.date_hierarchy\" refers to %r, which isn\\'t a field.' % opts.admin.date_hierarchy)\n\n # Check ordering attribute.\n if opts.ordering:\n for field_name in opts.ordering:\n if field_name == '?': continue\n if field_name.startswith('-'):\n field_name = field_name[1:]\n if opts.order_with_respect_to and field_name == '_order':\n continue\n if '.' in field_name: continue # Skip ordering in the format 'table.field'.\n try:\n opts.get_field(field_name, many_to_many=False)\n except models.FieldDoesNotExist:\n e.add(opts, '\"ordering\" refers to \"%s\", a field that doesn\\'t exist.' % field_name)\n\n # Check core=True, if needed.\n for related in opts.get_followed_related_objects():\n if not related.edit_inline:\n continue\n try:\n for f in related.opts.fields:\n if f.core:\n raise StopIteration\n e.add(related.opts, \"At least one field in %s should have core=True, because it's being edited inline by %s.%s.\" % (related.opts.object_name, opts.module_name, opts.object_name))\n except StopIteration:\n pass\n\n # Check unique_together.\n for ut in opts.unique_together:\n for field_name in ut:\n try:\n f = opts.get_field(field_name, many_to_many=True)\n except models.FieldDoesNotExist:\n e.add(opts, '\"unique_together\" refers to %s, a field that doesn\\'t exist. Check your syntax.' % field_name)\n else:\n if isinstance(f.rel, models.ManyToManyRel):\n e.add(opts, '\"unique_together\" refers to %s. ManyToManyFields are not supported in unique_together.' % f.name)\n\n return len(e.errors)",
"metadata": "root.get_validation_errors",
"header": "['module', '___EOS___']",
"index": 938
}
]
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|
Unused import | tjguk/winsys/winsys/accounts.py | [
{
"content": "# -*- coding: utf-8 -*-\n\"\"\"All security in windows is handled via Security Principals. These can\nbe a user (the most common case), a group of users, a computer, or something\nelse. Security principals are uniquely identified by their SID: a binary code\nrepresented by a string S-a-b-cd-efg... where each of the segments represents\nan aspect of the security authorities involved. (A computer, a domain etc.).\nCertain of the SIDs are considered well-known such as the AuthenticatedUsers\naccount on each machine which will always have the same SID.\n\nMost of the access to this module will be via the :func:`principal`\nor :func:`me` functions. Although the module is designed to be used\nstandalone, it is imported directly into the :mod:`security` module's\nnamespace so its functionality can also be accessed from there.\n\"\"\"\nfrom __future__ import unicode_literals\n\nimport os, sys\nimport contextlib\nimport socket\n\nimport ntsecuritycon\nimport pywintypes\nimport win32con\nimport win32security\nimport win32api\nimport win32cred\nimport win32event\nimport win32net\nimport win32netcon\nimport winerror\n\nfrom winsys._compat import *\nfrom winsys import constants, core, exc, utils\nfrom winsys import _advapi32\n\n__all__ = ['LOGON', 'EXTENDED_NAME', 'x_accounts', 'principal', 'Principal', 'User', 'Group', 'me']\n\nLOGON = constants.Constants.from_pattern(\"LOGON32_*\", namespace=win32security)\nLOGON.doc(\"Types of logon used by LogonUser and related APIs\")\nEXTENDED_NAME = constants.Constants.from_pattern(\"Name*\", namespace=win32con)\nEXTENDED_NAME.doc(\"Extended display formats for usernames\")\nWELL_KNOWN_SID = constants.Constants.from_pattern(\"Win*Sid\", namespace=win32security)\nWELL_KNOWN_SID.doc(\"Well-known SIDs common to all computers\")\nUSER_PRIV = constants.Constants.from_list([\"USER_PRIV_GUEST\", \"USER_PRIV_USER\", \"USER_PRIV_ADMIN\"], pattern=\"USER_PRIV_*\", namespace=win32netcon)\nUSER_PRIV.doc(\"User-types for creating new users\")\nUF = constants.Constants.from_pattern(\"UF_*\", namespace=win32netcon)\nUF.doc(\"Flags for creating new users\")\nSID_NAME_USE = constants.Constants.from_pattern(\"SidType*\", namespace=ntsecuritycon)\nSID_NAME_USE.doc(\"Types of accounts for which SIDs exist\")\nFILTER = constants.Constants.from_pattern(\"FILTER_*\", namespace=win32netcon)\nFILTER.doc(\"Filters when enumerating users\")\n\nPySID = pywintypes.SIDType\n\n\nWINERROR_MAP = {\n winerror.ERROR_NONE_MAPPED : exc.x_not_found\n}\nwrapped = exc.wrapper(WINERROR_MAP, x_accounts)\n\n\n\n\n\n\n\n\n_domain = None\n\n\n\n\n\n\n\n\nPrincipal.SID_NAME_USE_MAP = {\n SID_NAME_USE.User : User,\n SID_NAME_USE.Group : Group,\n SID_NAME_USE.WellKnownGroup : Group\n}\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class x_accounts(exc.x_winsys):\n \"Base for all accounts-related exceptions\"",
"metadata": "root.x_accounts",
"header": "['module', '___EOS___']",
"index": 54
},
{
"content": "def _win32net_enum(win32_fn, system_or_domain):\n resume = 0\n while True:\n items, total, resume = wrapped(win32_fn, system_or_domain, 0, resume)\n for item in items:\n yield item\n if resume == 0: break",
"metadata": "root._win32net_enum",
"header": "['module', '___EOS___']",
"index": 62
},
{
"content": "def principal(principal, cls=core.UNSET):\n \"\"\"Factory function for the :class:`Principal` class. This is the most\n common way to create a :class:`Principal` object::\n\n from winsys import accounts\n service_account = accounts.principal (accounts.WELL_KNOWN_SID.Service)\n local_admin = accounts.principal (\"Administrator\")\n domain_users = accounts.principal (r\"DOMAIN\\Domain Users\")\n\n :param principal: any of None, a :class:`Principal`, a `PySID`,\n a :const:`WELL_KNOWN_SID` or a string\n :returns: a :class:`Principal` object corresponding to `principal`\n \"\"\"\n cls = Principal if cls is core.UNSET else cls\n if principal is None:\n return None\n elif type(principal) == PySID:\n return cls.from_sid(principal)\n elif isinstance(principal, int):\n return cls.from_well_known(principal)\n elif isinstance(principal, cls):\n return principal\n else:\n return cls.from_string(unicode(principal))",
"metadata": "root.principal",
"header": "['module', '___EOS___']",
"index": 70
},
{
"content": "def user(name):\n \"\"\"If you know you're after a user, use this. Particularly\n useful when a system user is defined as an alias type\n \"\"\"\n return principal(name, cls=User)",
"metadata": "root.user",
"header": "['module', '___EOS___']",
"index": 95
},
{
"content": "def group(name):\n \"\"\"If you know you're after a group, use this. Particularly\n useful when a system group is defined as an alias type\n \"\"\"\n return principal(name, cls=Group)",
"metadata": "root.group",
"header": "['module', '___EOS___']",
"index": 101
},
{
"content": "def local_group(name):\n \"\"\"If you know you're after a local group, use this.\n \"\"\"\n return principal(name, cls=LocalGroup)",
"metadata": "root.local_group",
"header": "['module', '___EOS___']",
"index": 107
},
{
"content": "def global_group(name):\n \"\"\"If you know you're after a global group, use this.\n \"\"\"\n return principal(name, cls=GlobalGroup)",
"metadata": "root.global_group",
"header": "['module', '___EOS___']",
"index": 112
},
{
"content": "def me():\n \"\"\"Convenience function for the common case of getting the\n logged-on user's account.\n \"\"\"\n return Principal.me()",
"metadata": "root.me",
"header": "['module', '___EOS___']",
"index": 117
},
{
"content": "def domain(system=None):\n global _domain\n if _domain is None:\n _domain = wrapped(win32net.NetWkstaGetInfo, system, 100)['langroup']\n return _domain",
"metadata": "root.domain",
"header": "['module', '___EOS___']",
"index": 124
},
{
"content": "def domain_controller(domain=None):\n return wrapped(win32net.NetGetAnyDCName, None, domain)",
"metadata": "root.domain_controller",
"header": "['module', '___EOS___']",
"index": 130
},
{
"content": "def users(system=None):\n \"\"\"Convenience function to yield each of the local users\n on a system.\n\n :param system: optional security authority\n :returns: yield :class:`User` objects\n \"\"\"\n return iter(_LocalUsers(system))",
"metadata": "root.users",
"header": "['module', '___EOS___']",
"index": 133
},
{
"content": "class Principal(core._WinSysObject):\n \"\"\"Object wrapping a Windows security principal, represented by a SID\n and, where possible, a name. :class:`Principal` compares and hashes\n by SID so can be sorted and used as a dictionary key, set element, etc.\n\n A :class:`Principal` is its own context manager, impersonating the\n corresponding user::\n\n from winsys import accounts\n with accounts.principal(\"python\"):\n print accounts.me()\n\n Note, though, that this will prompt for a password using the\n Win32 password UI. To logon with a password, use the :meth:`impersonate`\n context-managed function. TODO: allow password to be set securely.\n \"\"\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.Principal",
"header": "['module', '___EOS___']",
"index": 142
},
{
"content": " def __init__(self, sid, system=None):\n \"\"\"Initialise a Principal from and (optionally) a system name. The sid\n must be a PySID and the system name, if present must be a security\n authority, eg a machine or a domain.\n \"\"\"\n core._WinSysObject.__init__(self)\n self.sid = sid\n self.system = system\n try:\n self.name, self.domain, self.type = wrapped(win32security.LookupAccountSid, self.system, self.sid)\n except exc.x_not_found:\n self.name = str(self.sid)\n self.domain = self.type = None\n #~ if self.system is None:\n #~ self.system = domain_controller(self.domain)",
"metadata": "root.Principal.__init__",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 158
},
{
"content": " def __hash__(self):\n return hash(str(self.sid))",
"metadata": "root.Principal.__hash__",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 174
},
{
"content": " def __eq__(self, other):\n return self.sid == principal(other).sid",
"metadata": "root.Principal.__eq__",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 177
},
{
"content": " def __lt__(self, other):\n return self.sid < principal(other).sid",
"metadata": "root.Principal.__lt__",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 180
},
{
"content": " def pyobject(self):\n \"\"\"Return the internal representation of this object.\n\n :returns: pywin32 SID\n \"\"\"\n return self.sid",
"metadata": "root.Principal.pyobject",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 183
},
{
"content": " def as_string(self):\n if self.domain:\n return \"%s\\%s\" % (self.domain, self.name)\n else:\n return self.name or str(self.sid)",
"metadata": "root.Principal.as_string",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 190
},
{
"content": " def dumped(self, level):\n return utils.dumped(\"user: %s\\nsid: %s\" % (\n self.as_string(),\n wrapped(win32security.ConvertSidToStringSid, self.sid)\n ), level)",
"metadata": "root.Principal.dumped",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 196
},
{
"content": " def logon(self, password=core.UNSET, logon_type=core.UNSET):\n \"\"\"Log on as an authenticated user, returning that\n user's token. This is used by security.impersonate\n which wraps the token in a Token object and manages\n its lifetime in a context.\n\n (EXPERIMENTAL) If no password is given, a UI pops up\n to ask for a password.\n\n :param password: the password for this account\n :param logon_type: one of the :const:`LOGON` values\n :returns: a pywin32 handle to a token\n \"\"\"\n if logon_type is core.UNSET:\n logon_type = LOGON.LOGON_NETWORK\n else:\n logon_type = LOGON.constant(logon_type)\n #~ if password is core.UNSET:\n #~ password = dialogs.get_password(self.name, self.domain)\n hUser = wrapped(\n win32security.LogonUser,\n self.name,\n self.domain,\n password,\n logon_type,\n LOGON.PROVIDER_DEFAULT\n )\n return hUser",
"metadata": "root.Principal.logon",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 202
},
{
"content": " @classmethod\n def from_string(cls, string, system=None):\n r\"\"\"Return a :class:`Principal` based on a name and a\n security authority. If `string` is blank, the logged-on user is assumed.\n\n :param string: name of an account in the form \"domain\\name\". domain is optional so the simplest form is simply \"name\"\n :param system: name of a security authority (typically a machine or a domain)\n :returns: a :class:`Principal` object for `string`\n \"\"\"\n if string == \"\":\n string = wrapped(win32api.GetUserNameEx, win32con.NameSamCompatible)\n sid, domain, type = wrapped(\n win32security.LookupAccountName,\n None if system is None else unicode(system),\n unicode(string)\n )\n cls = cls.SID_NAME_USE_MAP.get(type, cls)\n return cls(sid, None if system is None else unicode(system))",
"metadata": "root.Principal.from_string",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 231
},
{
"content": " @classmethod\n def from_sid(cls, sid, system=None):\n \"\"\"Return a :class:`Principal` based on a sid and a security authority.\n\n :param sid: a PySID\n :param system_name: optional name of a security authority\n :returns: a :class:`Principal` object for `sid`\n \"\"\"\n try:\n name, domain, type = wrapped(\n win32security.LookupAccountSid,\n None if system is None else unicode(system),\n sid\n )\n except exc.x_not_found:\n name = domain = type = core.UNSET\n cls = cls.SID_NAME_USE_MAP.get(type, cls)\n return cls(sid, None if system is None else unicode(system))",
"metadata": "root.Principal.from_sid",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 250
},
{
"content": " @classmethod\n def from_well_known(cls, well_known, domain=None):\n \"\"\"Return a :class:`Principal` based on one of the :const:`WELL_KNOWN_SID` values.\n\n :param well_known: one of the :const:`WELL_KNOWN_SID`\n :param domain: anything accepted by :func:`principal` and corresponding to a domain\n \"\"\"\n return cls.from_sid(wrapped(win32security.CreateWellKnownSid, well_known, principal(domain)))",
"metadata": "root.Principal.from_well_known",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 269
},
{
"content": " @classmethod\n def me(cls):\n \"\"\"Convenience factory method for the common case of referring to the\n logged-on user\n \"\"\"\n return cls.from_string(wrapped(win32api.GetUserNameEx, EXTENDED_NAME.SamCompatible))",
"metadata": "root.Principal.me",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 278
},
{
"content": " @contextlib.contextmanager\n def impersonate(self, password=core.UNSET, logon_type=core.UNSET):\n \"\"\"Context-managed function to impersonate this user and then\n revert::\n\n from winsys import accounts, security\n print accounts.me()\n python = accounts.principal(\"python\")\n with python.impersonate(\"Pa55w0rd\"):\n print accounts.me()\n open(\"temp.txt\", \"w\").close()\n print accounts.me()\n security.security(\"temp.txt\").owner == python\n\n Note that the :class:`Principal` class is also its own\n context manager but does not allow the password to be specified.\n\n :param password: password for this account\n :param logon_type: one of the :const:`LOGON` values\n \"\"\"\n hLogon = self.logon(password, logon_type)\n wrapped(win32security.ImpersonateLoggedOnUser, hLogon)\n yield hLogon\n wrapped(win32security.RevertToSelf)",
"metadata": "root.Principal.impersonate",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 285
},
{
"content": " def __enter__(self):\n wrapped(win32security.ImpersonateLoggedOnUser, self.logon(logon_type=LOGON.LOGON_INTERACTIVE))",
"metadata": "root.Principal.__enter__",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 310
},
{
"content": " def __exit__(self, *exc_info):\n wrapped(win32security.RevertToSelf)",
"metadata": "root.Principal.__exit__",
"header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']",
"index": 313
},
{
"content": "class User(Principal):\n\n\n\n\n\n",
"metadata": "root.User",
"header": "['module', '___EOS___']",
"index": 316
},
{
"content": " @classmethod\n def create(cls, username, password, system=None):\n \"\"\"Create a new user with `username` and `password`. Return\n a :class:`User` for the new user.\n\n :param username: username of the new user. Must not already exist on `system`\n :param password: password for the new user. Must meet security policy on `system`\n :param system: optional system name\n :returns: a :class:`User` for `username`\n \"\"\"\n user_info = dict(\n name = username,\n password = password,\n priv = USER_PRIV.USER,\n home_dir = None,\n comment = None,\n flags = UF.SCRIPT,\n script_path = None\n )\n wrapped(win32net.NetUserAdd, system, 1, user_info)\n return cls.from_string(username, system)",
"metadata": "root.User.create",
"header": "['class', 'User', '(', 'Principal', ')', ':', '___EOS___']",
"index": 318
},
{
"content": " def delete(self):\n \"\"\"Delete this user from `system`.\n\n :param system: optional security authority\n \"\"\"\n wrapped(win32net.NetUserDel, self.system, self.name)",
"metadata": "root.User.delete",
"header": "['class', 'User', '(', 'Principal', ')', ':', '___EOS___']",
"index": 340
},
{
"content": " def groups(self):\n \"\"\"Yield the groups this user belongs to\n\n :param system: optional security authority\n \"\"\"\n for group_name, attributes in wrapped(win32net.NetUserGetGroups, self.system, self.name):\n yield group(group_name)\n for group_name in wrapped(win32net.NetUserGetLocalGroups, self.system, self.name):\n yield group(group_name)",
"metadata": "root.User.groups",
"header": "['class', 'User', '(', 'Principal', ')', ':', '___EOS___']",
"index": 347
},
{
"content": " def join(self, other_group):\n \"\"\"Add this user to a group\n\n :param other_group: anything accepted by :func:`group`\n :returns: self\n \"\"\"\n return group(other_group).add(self)",
"metadata": "root.User.join",
"header": "['class', 'User', '(', 'Principal', ')', ':', '___EOS___']",
"index": 357
},
{
"content": " def leave(self, other_group):\n \"\"\"Remove this user from a group\n\n :param other_group: anything accepted by :func:`group`\n :returns: self\n \"\"\"\n return group(other_group).remove(self)",
"metadata": "root.User.leave",
"header": "['class', 'User', '(', 'Principal', ')', ':', '___EOS___']",
"index": 365
},
{
"content": " def runas(self, command_line, password=core.UNSET, load_profile=False):\n \"\"\"Run a command logged on as this user\n\n :param command_line: command line to run, quoted as necessary\n :param password: password; if not supplied, standard Windows prompt\n :param with_profile: if True, HKEY_CURRENT_USER is loaded [False]\n \"\"\"\n #~ if not password:\n #~ password = dialogs.get_password(self.name, self.domain)\n logon_flags = 0\n if load_profile: logon_flags |= _advapi32.LOGON_FLAGS.WITH_PROFILE\n process_info = _advapi32.CreateProcessWithLogonW(\n username=self.name,\n domain=self.domain,\n password=password,\n command_line=command_line,\n logon_flags=logon_flags\n )\n #\n # Wait for up to 20 secs\n #\n #~ if wrapped(win32event.WaitForInputIdle, process_info.hProcess, 10000) == win32event.WAIT_TIMEOUT:\n #~ raise x_accounts(errctx=\"runas\", errmsg=\"runas process not created with 10 secs\")",
"metadata": "root.User.runas",
"header": "['class', 'User', '(', 'Principal', ')', ':', '___EOS___']",
"index": 373
},
{
"content": "class Group(Principal):\n\n SID_NAME_USE_MAP = {}\n",
"metadata": "root.Group",
"header": "['module', '___EOS___']",
"index": 397
},
{
"content": " def __contains__(self, member):\n \"\"\"Crudely, iterate over the group's members until you hit `member`\n \"\"\"\n member = principal(member)\n return any(member == m for m in self)",
"metadata": "root.Group.__contains__",
"header": "['class', 'Group', '(', 'Principal', ')', ':', '___EOS___']",
"index": 401
},
{
"content": "class GlobalGroup(Group):\n\n _enumerator = win32net.NetGroupEnum\n\n\n\n\n",
"metadata": "root.GlobalGroup",
"header": "['module', '___EOS___']",
"index": 407
},
{
"content": " @classmethod\n def create(cls, groupname, domain=None):\n \"\"\"Create a new group. Return a :class:`Group` for the new group.\n\n :param groupname: name of the new group. Must not already exist on `system`\n :param system: optional security authority\n :returns: a :class:`Group` for `groupname`\n \"\"\"\n system = domain_controller(domain)\n wrapped(win32net.NetGroupAdd, system, 0, dict(name=groupname))\n return cls.from_string(groupname, system)",
"metadata": "root.GlobalGroup.create",
"header": "['class', 'GlobalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 411
},
{
"content": " def delete(self):\n \"\"\"Delete this group from `system`.\n\n :param system: optional security authority\n \"\"\"\n wrapped(win32net.NetGroupDel, self.system, self.name)",
"metadata": "root.GlobalGroup.delete",
"header": "['class', 'GlobalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 423
},
{
"content": " def add(self, member):\n \"\"\"Add a :class:`Principal` to this local group\n\n :param member: anything accepted by :func:`principal`\n :returns: :class:`Principal` for `member`\n \"\"\"\n member = principal(member)\n wrapped(win32net.NetGroupAddUser, self.system, self.name, r\"%s\\%s\" % (member.domain, member.name))\n return member",
"metadata": "root.GlobalGroup.add",
"header": "['class', 'GlobalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 430
},
{
"content": " def remove(self, member):\n \"\"\"Remove a :class:`Principal` from this local group. The\n principal must already be a member of the group.\n\n :param member: anything accepted by :func:`principal`\n :returns: :class:`Principal` for `member`\n \"\"\"\n member = principal(member)\n wrapped(win32net.NetGroupDelUser, self.system, self.name, r\"%s\\%s\" % (member.domain, member.name))\n return member",
"metadata": "root.GlobalGroup.remove",
"header": "['class', 'GlobalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 440
},
{
"content": " def __iter__(self):\n \"\"\"Yield the list of members of this group.\n\n :returns: yield a :class:`Principal` or subclass corresponding to each member\n of this group\n \"\"\"\n resume = 0\n while True:\n members, total, resume = wrapped(win32net.NetGroupGetUsers, self.system, self.name, 1, resume)\n for member in members:\n yield principal(member['name'])\n if resume == 0: break",
"metadata": "root.GlobalGroup.__iter__",
"header": "['class', 'GlobalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 451
},
{
"content": "class LocalGroup(Group):\n\n\n\n\n",
"metadata": "root.LocalGroup",
"header": "['module', '___EOS___']",
"index": 464
},
{
"content": " @classmethod\n def create(cls, groupname, system=None):\n \"\"\"Create a new group. Return a :class:`Group` for the new group.\n\n :param groupname: name of the new group. Must not already exist on `system`\n :param system: optional security authority\n :returns: a :class:`Group` for `groupname`\n \"\"\"\n wrapped(win32net.NetLocalGroupAdd, system, 0, dict(name=groupname))\n return cls.from_string(groupname, system)",
"metadata": "root.LocalGroup.create",
"header": "['class', 'LocalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 466
},
{
"content": " def delete(self):\n \"\"\"Delete this group from `system`.\n\n :param system: optional security authority\n \"\"\"\n wrapped(win32net.NetLocalGroupDel, self.system, self.name)",
"metadata": "root.LocalGroup.delete",
"header": "['class', 'LocalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 477
},
{
"content": " def add(self, member):\n \"\"\"Add a :class:`Principal` to this local group\n\n :param member: anything accepted by :func:`principal`\n :returns: :class:`Principal` for `member`\n \"\"\"\n member = principal(member)\n wrapped(win32net.NetLocalGroupAddMembers, self.system, self.name, 0, [dict(sid=member.sid)])\n return member",
"metadata": "root.LocalGroup.add",
"header": "['class', 'LocalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 484
},
{
"content": " def remove(self, member):\n \"\"\"Remove a :class:`Principal` from this local group. The\n principal must already be a member of the group.\n\n :param member: anything accepted by :func:`principal`\n :returns: :class:`Principal` for `member`\n \"\"\"\n member = principal(member)\n wrapped(win32net.NetLocalGroupDelMembers, self.system, self.name, [\"%s\\\\%s\" % (member.domain, member.name)])\n return member",
"metadata": "root.LocalGroup.remove",
"header": "['class', 'LocalGroup', '(', 'Group', ')', ':', '___EOS___']",
"index": 494
},
{
"content": " def __iter__(self):\n \"\"\"Yield the list of members of this group.\n\n :returns: yield a :class:`Principal` or subclass corresponding to each member\n of this group\n \"\"\"\n resume = 0\n while True:\n members, total, resume = wrapped(win32net.NetLocalGroupGetMembers, self.system, self.name, resume)\n for member in members:\n yield principal(member['sid'])\n if resume == 0: break",
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},
{
"content": "def local_groups(system=None):\n \"\"\"Convenience function to yield each of the local users\n on a system.\n\n :param system: optional security authority\n :returns: yield :class:`LocalGroup` objects\n \"\"\"\n for group in _win32net_enum(win32net.NetLocalGroupEnum, system):\n yield LocalGroup.from_string(group['name'])",
"metadata": "root.local_groups",
"header": "['module', '___EOS___']",
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},
{
"content": "def global_groups(domain=None):\n \"\"\"Convenience function to yield each of the local users\n on a system.\n\n :param domain: optional security domain\n :returns: yield :class:`GlobalGroup` objects\n \"\"\"\n for group in _win32net_enum(win32net.NetGroupEnum, domain_controller(domain)):\n yield GlobalGroup.from_string(group['name'])",
"metadata": "root.global_groups",
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{
"content": "class _LocalUsers(object):\n\n\n\n",
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"header": "['module', '___EOS___']",
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},
{
"content": " def __init__(self, system=None):\n self.system = system",
"metadata": "root._LocalUsers.__init__",
"header": "['class', '_LocalUsers', '(', 'object', ')', ':', '___EOS___']",
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{
"content": " def __iter__(self):\n resume = 0\n while True:\n users, total, resume = wrapped(win32net.NetUserEnum, self.system, 0, FILTER.NORMAL_ACCOUNT, resume)\n for user in users:\n yield User.from_string(user['name'])\n if resume == 0: break",
"metadata": "root._LocalUsers.__iter__",
"header": "['class', '_LocalUsers', '(', 'object', ')', ':', '___EOS___']",
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},
{
"content": " def add(self, username, password):\n return User.create(username, password)",
"metadata": "root._LocalUsers.add",
"header": "['class', '_LocalUsers', '(', 'object', ')', ':', '___EOS___']",
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},
{
"content": " def remove(self, local_user):\n return user(local_user).delete()",
"metadata": "root._LocalUsers.remove",
"header": "['class', '_LocalUsers', '(', 'object', ')', ':', '___EOS___']",
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}
]
| [
{
"span": "import os, sys",
"start_line": 16,
"start_column": 0,
"end_line": 16,
"end_column": 14
},
{
"span": "import socket",
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{
"span": "import win32cred",
"start_line": 25,
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"end_line": 25,
"end_column": 16
},
{
"span": "import win32event",
"start_line": 26,
"start_column": 0,
"end_line": 26,
"end_column": 17
}
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Unused import | hpssjellis/easy-tensorflow-on-cloud9/bcomposes-examples/hidden-backup.py | [
{
"content": "import tensorflow.python.platform\n\nimport numpy as np\nimport tensorflow as tf\n\n# Global variables.\nNUM_LABELS = 2 # The number of labels.\nBATCH_SIZE = 100 # The number of training examples to use per training step.\n\ntf.app.flags.DEFINE_string('train', None,\n 'File containing the training data (labels & features).')\ntf.app.flags.DEFINE_string('test', None,\n 'File containing the test data (labels & features).')\ntf.app.flags.DEFINE_integer('num_epochs', 1,\n 'Number of passes over the training data.')\ntf.app.flags.DEFINE_integer('num_hidden', 1,\n 'Number of nodes in the hidden layer.')\ntf.app.flags.DEFINE_boolean('verbose', False, 'Produce verbose output.')\nFLAGS = tf.app.flags.FLAGS\n\n# Extract numpy representations of the labels and features given rows consisting of:\n# label, feat_0, feat_1, ..., feat_n\n\n# Init weights method. (Lifted from Delip Rao: http://deliprao.com/archives/100)\n \n \nif __name__ == '__main__':\n tf.app.run()\n",
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},
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"content": "def extract_data(filename):\n\n # Arrays to hold the labels and feature vectors.\n labels = []\n fvecs = []\n\n # Iterate over the rows, splitting the label from the features. Convert labels\n # to integers and features to floats.\n for line in file(filename):\n row = line.split(\",\")\n labels.append(int(row[0]))\n fvecs.append([float(x) for x in row[1:]])\n\n # Convert the array of float arrays into a numpy float matrix.\n fvecs_np = np.matrix(fvecs).astype(np.float32)\n\n # Convert the array of int labels into a numpy array.\n labels_np = np.array(labels).astype(dtype=np.uint8)\n\n # Convert the int numpy array into a one-hot matrix.\n labels_onehot = (np.arange(NUM_LABELS) == labels_np[:, None]).astype(np.float32)\n\n # Return a pair of the feature matrix and the one-hot label matrix.\n return fvecs_np,labels_onehot",
"metadata": "root.extract_data",
"header": "['module', '___EOS___']",
"index": 22
},
{
"content": "def init_weights(shape, init_method='xavier', xavier_params = (None, None)):\n if init_method == 'zeros':\n return tf.Variable(tf.zeros(shape, dtype=tf.float32))\n elif init_method == 'uniform':\n return tf.Variable(tf.random_normal(shape, stddev=0.01, dtype=tf.float32))\n else: #xavier\n (fan_in, fan_out) = xavier_params\n low = -4*np.sqrt(6.0/(fan_in + fan_out)) # {sigmoid:4, tanh:1} \n high = 4*np.sqrt(6.0/(fan_in + fan_out))\n return tf.Variable(tf.random_uniform(shape, minval=low, maxval=high, dtype=tf.float32))",
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"header": "['module', '___EOS___']",
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},
{
"content": "def main(argv=None):\n # Be verbose?\n verbose = FLAGS.verbose\n \n # Get the data.\n train_data_filename = FLAGS.train\n test_data_filename = FLAGS.test\n\n # Extract it into numpy arrays.\n train_data,train_labels = extract_data(train_data_filename)\n test_data, test_labels = extract_data(test_data_filename)\n\n # Get the shape of the training data.\n train_size,num_features = train_data.shape\n\n # Get the number of epochs for training.\n num_epochs = FLAGS.num_epochs\n\n # Get the size of layer one.\n num_hidden = FLAGS.num_hidden\n \n # This is where training samples and labels are fed to the graph.\n # These placeholder nodes will be fed a batch of training data at each\n # training step using the {feed_dict} argument to the Run() call below.\n x = tf.placeholder(\"float\", shape=[None, num_features])\n y_ = tf.placeholder(\"float\", shape=[None, NUM_LABELS])\n \n # For the test data, hold the entire dataset in one constant node.\n test_data_node = tf.constant(test_data)\n\n # Define and initialize the network.\n\n # Initialize the hidden weights and biases.\n w_hidden = init_weights(\n [num_features, num_hidden],\n 'xavier',\n xavier_params=(num_features, num_hidden))\n\n b_hidden = init_weights([1,num_hidden],'zeros')\n\n # The hidden layer.\n hidden = tf.nn.tanh(tf.matmul(x,w_hidden) + b_hidden)\n\n # Initialize the output weights and biases.\n w_out = init_weights(\n [num_hidden, NUM_LABELS],\n 'xavier',\n xavier_params=(num_hidden, NUM_LABELS))\n \n b_out = init_weights([1,NUM_LABELS],'zeros')\n\n # The output layer.\n y = tf.nn.softmax(tf.matmul(hidden, w_out) + b_out)\n \n # Optimization.\n cross_entropy = -tf.reduce_sum(y_*tf.log(y))\n train_step = tf.train.GradientDescentOptimizer(0.01).minimize(cross_entropy)\n \n # Evaluation.\n correct_prediction = tf.equal(tf.argmax(y,1), tf.argmax(y_,1))\n accuracy = tf.reduce_mean(tf.cast(correct_prediction, \"float\"))\n\n # Create a local session to run this computation.\n with tf.Session() as s:\n # Run all the initializers to prepare the trainable parameters.\n \ttf.initialize_all_variables().run()\n \tif verbose:\n \t print 'Initialized!'\n \t print\n \t print 'Training.'\n \t \n \t# Iterate and train.\n \tfor step in xrange(num_epochs * train_size // BATCH_SIZE):\n \t if verbose:\n \t print step,\n \t \n \t offset = (step * BATCH_SIZE) % train_size\n \t batch_data = train_data[offset:(offset + BATCH_SIZE), :]\n \t batch_labels = train_labels[offset:(offset + BATCH_SIZE)]\n \t train_step.run(feed_dict={x: batch_data, y_: batch_labels})\n \t if verbose and offset >= train_size-BATCH_SIZE:\n \t print\n \tprint \"Accuracy:\", accuracy.eval(feed_dict={x: test_data, y_: test_labels})",
"metadata": "root.main",
"header": "['module', '___EOS___']",
"index": 59
}
]
| [
{
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"end_column": 33
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Unused local variable | Arelle/Arelle/arelle/RenderingResolver.py | [
{
"content": "def expandDefinition(view, structuralNode, breakdownNode, definitionNode, depth, axisDisposition, facts, i=None, tblAxisRels=None, processOpenDefinitionNode=True):\n subtreeRelationships = view.axisSubtreeRelSet.fromModelObject(definitionNode)\n \n def checkLabelWidth(structuralNode, checkBoundFact=False):\n if axisDisposition == \"y\":\n # messages can't be evaluated, just use the text portion of format string\n label = structuralNode.header(lang=view.lang, \n returnGenLabel=not checkBoundFact, \n returnMsgFormatString=not checkBoundFact)\n if label:\n # need to et more exact word length in screen units\n widestWordLen = max(len(w) * RENDER_UNITS_PER_CHAR for w in label.split())\n # abstract only pertains to subtree of closed nodesbut not cartesian products or open nodes\n while structuralNode.depth >= len(view.rowHdrColWidth):\n view.rowHdrColWidth.append(0)\n if definitionNode.isAbstract or not subtreeRelationships: # isinstance(definitionNode, ModelOpenDefinitionNode): \n if widestWordLen > view.rowHdrColWidth[structuralNode.depth]:\n view.rowHdrColWidth[structuralNode.depth] = widestWordLen\n else:\n if widestWordLen > view.rowNonAbstractHdrSpanMin[structuralNode.depth]:\n view.rowNonAbstractHdrSpanMin[structuralNode.depth] = widestWordLen\n \n if axisDisposition == \"z\" and structuralNode.aspects is None:\n structuralNode.aspects = view.zOrdinateChoices.get(definitionNode, None)\n if structuralNode and isinstance(definitionNode, (ModelBreakdown, ModelEuAxisCoord, ModelDefinitionNode)):\n try:\n \n #cartesianProductNestedArgs = (view, depth, axisDisposition, facts, tblAxisRels, i)\n ordCardinality, ordDepth = definitionNode.cardinalityAndDepth(structuralNode)\n if (not definitionNode.isAbstract and\n isinstance(definitionNode, ModelClosedDefinitionNode) and \n ordCardinality == 0):\n view.modelXbrl.error(\"xbrlte:closedDefinitionNodeZeroCardinality\",\n _(\"Closed definition node %(xlinkLabel)s does not contribute at least one structural node\"),\n modelObject=(view.modelTable,definitionNode), xlinkLabel=definitionNode.xlinkLabel, axis=definitionNode.localName)\n nestedDepth = depth + ordDepth\n # HF test\n cartesianProductNestedArgs = [view, nestedDepth, axisDisposition, facts, tblAxisRels, i]\n if axisDisposition == \"z\":\n if depth == 1: # choices (combo boxes) don't add to z row count\n view.zAxisRows += 1 \n elif axisDisposition == \"x\":\n if ordDepth:\n if nestedDepth - 1 > view.colHdrRows:\n view.colHdrRows = nestedDepth - 1\n '''\n if not view.colHdrDocRow:\n if definitionNode.header(role=\"http://www.xbrl.org/2008/role/documentation\",\n lang=view.lang): \n view.colHdrDocRow = True\n if not view.colHdrCodeRow:\n if definitionNode.header(role=\"http://www.eurofiling.info/role/2010/coordinate-code\"): \n view.colHdrCodeRow = True\n '''\n hdrNonStdRoles = view.colHdrNonStdRoles\n elif axisDisposition == \"y\":\n if ordDepth:\n #if not definitionNode.isAbstract:\n # view.dataRows += ordCardinality\n if nestedDepth - 1 > view.rowHdrCols: \n view.rowHdrCols = nestedDepth - 1\n for j in range(1 + ordDepth):\n view.rowHdrColWidth.append(RENDER_UNITS_PER_CHAR) # min width for 'tail' of nonAbstract coordinate\n view.rowNonAbstractHdrSpanMin.append(0)\n checkLabelWidth(structuralNode, checkBoundFact=False)\n ''' \n if not view.rowHdrDocCol:\n if definitionNode.header(role=\"http://www.xbrl.org/2008/role/documentation\",\n lang=view.lang): \n view.rowHdrDocCol = True\n if not view.rowHdrCodeCol:\n if definitionNode.header(role=\"http://www.eurofiling.info/role/2010/coordinate-code\"): \n view.rowHdrCodeCol = True\n '''\n hdrNonStdRoles = view.rowHdrNonStdRoles\n if axisDisposition in (\"x\", \"y\"):\n hdrNonStdPosition = -1 # where a match last occured\n for rel in view.modelXbrl.relationshipSet(XbrlConst.elementLabel).fromModelObject(definitionNode):\n if rel.toModelObject is not None and rel.toModelObject.role != XbrlConst.genStandardLabel:\n labelLang = rel.toModelObject.xmlLang\n labelRole = rel.toModelObject.role\n if (labelLang == view.lang or labelLang.startswith(view.lang) or view.lang.startswith(labelLang)\n or (\"code\" in labelRole)):\n labelRole = rel.toModelObject.role\n if labelRole in hdrNonStdRoles:\n hdrNonStdPosition = hdrNonStdRoles.index(labelRole)\n else:\n hdrNonStdRoles.insert(hdrNonStdPosition + 1, labelRole)\n isCartesianProductExpanded = False\n if not isinstance(definitionNode, ModelFilterDefinitionNode):\n isCartesianProductExpanded = True\n # note: reduced set of facts should always be passed to subsequent open nodes\n for axisSubtreeRel in subtreeRelationships:\n childDefinitionNode = axisSubtreeRel.toModelObject\n if childDefinitionNode.isRollUp:\n structuralNode.rollUpStructuralNode = StructuralNode(structuralNode, breakdownNode, childDefinitionNode, )\n if not structuralNode.childStructuralNodes: # first sub ordinate is the roll up\n structuralNode.subtreeRollUp = CHILD_ROLLUP_FIRST\n else: \n structuralNode.subtreeRollUp = CHILD_ROLLUP_LAST\n if not view.topRollup.get(axisDisposition):\n view.topRollup[axisDisposition] = structuralNode.subtreeRollUp\n else:\n if (isinstance(definitionNode, (ModelBreakdown, ModelCompositionDefinitionNode)) and\n isinstance(childDefinitionNode, ModelRelationshipDefinitionNode)): # append list products to composititionAxes subObjCntxs\n childStructuralNode = structuralNode\n else:\n childStructuralNode = StructuralNode(structuralNode, breakdownNode, childDefinitionNode) # others are nested structuralNode\n if axisDisposition != \"z\":\n structuralNode.childStructuralNodes.append(childStructuralNode)\n if axisDisposition != \"z\":\n expandDefinition(view, childStructuralNode, breakdownNode, childDefinitionNode, depth+ordDepth, axisDisposition, facts, i, tblAxisRels) #recurse\n if not childContainsOpenNodes(childStructuralNode) :\n # To be computed only if the structural node does not contain an open node\n cartesianProductExpander(childStructuralNode, *cartesianProductNestedArgs)\n else:\n childStructuralNode.indent = depth - 1\n if structuralNode.choiceStructuralNodes is not None:\n structuralNode.choiceStructuralNodes.append(childStructuralNode)\n expandDefinition(view, childStructuralNode, breakdownNode, childDefinitionNode, depth + 1, axisDisposition, facts) #recurse\n # required when switching from abstract to roll up to determine abstractness\n #if not structuralNode.subtreeRollUp and structuralNode.childStructuralNodes and definitionNode.tag.endswith(\"Node\"):\n # structuralNode.subtreeRollUp = CHILDREN_BUT_NO_ROLLUP\n \n #if not hasattr(structuralNode, \"indent\"): # probably also for multiple open axes\n if processOpenDefinitionNode:\n if isinstance(definitionNode, ModelRelationshipDefinitionNode):\n structuralNode.isLabeled = False\n selfStructuralNodes = {} if definitionNode.axis.endswith('-or-self') else None\n for rel in definitionNode.relationships(structuralNode):\n if not isinstance(rel, list):\n relChildStructuralNode = addRelationship(breakdownNode, definitionNode, rel, structuralNode, cartesianProductNestedArgs, selfStructuralNodes)\n else:\n addRelationships(breakdownNode, definitionNode, rel, relChildStructuralNode, cartesianProductNestedArgs)\n if axisDisposition == \"z\":\n # if definitionNode is first structural node child remove it\n if structuralNode.choiceStructuralNodes and structuralNode.choiceStructuralNodes[0].definitionNode == definitionNode:\n del structuralNode.choiceStructuralNodes[0]\n # flatten hierarchy of nested structural nodes inot choice nodes (for single listbox)\n def flattenChildNodesToChoices(childStructuralNodes, indent):\n while childStructuralNodes:\n choiceStructuralNode = childStructuralNodes.pop(0)\n choiceStructuralNode.indent = indent\n structuralNode.choiceStructuralNodes.append(choiceStructuralNode)\n flattenChildNodesToChoices(choiceStructuralNode.childStructuralNodes, indent + 1)\n if structuralNode.childStructuralNodes:\n flattenChildNodesToChoices(structuralNode.childStructuralNodes, 0)\n # set up by definitionNode.relationships\n if isinstance(definitionNode, ModelConceptRelationshipDefinitionNode):\n if (definitionNode._sourceQname != XbrlConst.qnXfiRoot and\n definitionNode._sourceQname not in view.modelXbrl.qnameConcepts):\n view.modelXbrl.error(\"xbrlte:invalidConceptRelationshipSource\",\n _(\"Concept relationship rule node %(xlinkLabel)s source %(source)s does not refer to an existing concept.\"),\n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel, source=definitionNode._sourceQname)\n elif isinstance(definitionNode, ModelDimensionRelationshipDefinitionNode):\n dim = view.modelXbrl.qnameConcepts.get(definitionNode._dimensionQname)\n if dim is None or not dim.isExplicitDimension:\n view.modelXbrl.error(\"xbrlte:invalidExplicitDimensionQName\",\n _(\"Dimension relationship rule node %(xlinkLabel)s dimension %(dimension)s does not refer to an existing explicit dimension.\"),\n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel, dimension=definitionNode._dimensionQname)\n domMbr = view.modelXbrl.qnameConcepts.get(definitionNode._sourceQname)\n if domMbr is None or not domMbr.isDomainMember:\n view.modelXbrl.error(\"xbrlte:invalidDimensionRelationshipSource\",\n _(\"Dimension relationship rule node %(xlinkLabel)s source %(source)s does not refer to an existing domain member.\"),\n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel, source=definitionNode._sourceQname)\n if (definitionNode._axis in (\"child\", \"child-or-self\", \"parent\", \"parent-or-self\", \"sibling\", \"sibling-or-self\") and\n (not isinstance(definitionNode._generations, _NUM_TYPES) or definitionNode._generations > 1)):\n view.modelXbrl.error(\"xbrlte:relationshipNodeTooManyGenerations \",\n _(\"Relationship rule node %(xlinkLabel)s formulaAxis %(axis)s implies a single generation tree walk but generations %(generations)s is greater than one.\"),\n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel, axis=definitionNode._axis, generations=definitionNode._generations)\n \n elif isinstance(definitionNode, ModelSelectionDefinitionNode):\n structuralNode.setHasOpenNode()\n structuralNode.isLabeled = False\n isCartesianProductExpanded = True\n varQn = definitionNode.variableQname\n if varQn:\n selections = sorted(structuralNode.evaluate(definitionNode, definitionNode.evaluate) or [], \n key=lambda obj:sortkey(obj))\n if isinstance(selections, (list,set,tuple)) and len(selections) > 1:\n for selection in selections: # nested choices from selection list\n childStructuralNode = StructuralNode(structuralNode, breakdownNode, definitionNode, contextItemFact=selection)\n childStructuralNode.variables[varQn] = selection\n childStructuralNode.indent = 0\n if axisDisposition == \"z\":\n structuralNode.choiceStructuralNodes.append(childStructuralNode)\n childStructuralNode.zSelection = True\n else:\n structuralNode.childStructuralNodes.append(childStructuralNode)\n expandDefinition(view, childStructuralNode, breakdownNode, definitionNode, depth, axisDisposition, facts, processOpenDefinitionNode=False) #recurse\n cartesianProductExpander(childStructuralNode, *cartesianProductNestedArgs)\n else:\n structuralNode.variables[varQn] = selections\n elif isinstance(definitionNode, ModelFilterDefinitionNode):\n structuralNode.setHasOpenNode()\n structuralNode.isLabeled = False\n isCartesianProductExpanded = True\n structuralNode.abstract = True # spanning ordinate acts as a subtitle\n filteredFactsPartitions = structuralNode.evaluate(definitionNode, \n definitionNode.filteredFactsPartitions, \n evalArgs=(facts,))\n if structuralNode._rendrCntx.formulaOptions.traceVariableFilterWinnowing:\n view.modelXbrl.info(\"table:trace\",\n _(\"Filter node %(xlinkLabel)s facts partitions: %(factsPartitions)s\"), \n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel,\n factsPartitions=str(filteredFactsPartitions))\n \n # ohly for fact entry (true if no parent open nodes or all are on entry prototype row)\n if axisDisposition != \"z\":\n childList = structuralNode.childStructuralNodes\n if structuralNode.isEntryPrototype(default=True):\n for i in range(getattr(view, \"openBreakdownLines\", \n # for file output, 1 entry row if no facts\n 0 if filteredFactsPartitions else 1)):\n view.aspectEntryObjectId += 1\n filteredFactsPartitions.append([FactPrototype(view, {\"aspectEntryObjectId\": OPEN_ASPECT_ENTRY_SURROGATE + str(view.aspectEntryObjectId)})])\n if structuralNode.isEntryPrototype(default=False):\n break # only one node per cartesian product under outermost nested open entry row\n else:\n childList = structuralNode.choiceStructuralNodes\n for factsPartition in filteredFactsPartitions:\n childStructuralNode = StructuralNode(structuralNode, breakdownNode, definitionNode, contextItemFact=factsPartition[0])\n childStructuralNode.indent = 0\n childStructuralNode.depth -= 1 # for label width; parent is merged/invisible\n childList.append(childStructuralNode)\n checkLabelWidth(childStructuralNode, checkBoundFact=True)\n #expandDefinition(view, childStructuralNode, breakdownNode, definitionNode, depth, axisDisposition, factsPartition, processOpenDefinitionNode=False) #recurse\n cartesianProductNestedArgs[3] = factsPartition\n # note: reduced set of facts should always be passed to subsequent open nodes\n if subtreeRelationships:\n for axisSubtreeRel in subtreeRelationships:\n child2DefinitionNode = axisSubtreeRel.toModelObject\n child2StructuralNode = StructuralNode(childStructuralNode, breakdownNode, child2DefinitionNode) # others are nested structuralNode\n childStructuralNode.childStructuralNodes.append(child2StructuralNode)\n expandDefinition(view, child2StructuralNode, breakdownNode, child2DefinitionNode, depth+ordDepth, axisDisposition, factsPartition) #recurse\n cartesianProductExpander(child2StructuralNode, *cartesianProductNestedArgs)\n else:\n cartesianProductExpander(childStructuralNode, *cartesianProductNestedArgs)\n # sort by header (which is likely to be typed dim value, for example)\n childList.sort(key=lambda childStructuralNode: \n childStructuralNode.header(lang=view.lang, \n returnGenLabel=False, \n returnMsgFormatString=False) \n or '') # exception on trying to sort if header returns None\n \n # TBD if there is no abstract 'sub header' for these subOrdCntxs, move them in place of parent structuralNode \n elif isinstance(definitionNode, ModelTupleDefinitionNode):\n structuralNode.abstract = True # spanning ordinate acts as a subtitle\n matchingTupleFacts = structuralNode.evaluate(definitionNode, \n definitionNode.filteredFacts, \n evalArgs=(facts,))\n for tupleFact in matchingTupleFacts:\n childStructuralNode = StructuralNode(structuralNode, breakdownNode, definitionNode, contextItemFact=tupleFact)\n childStructuralNode.indent = 0\n structuralNode.childStructuralNodes.append(childStructuralNode)\n expandDefinition(view, childStructuralNode, breakdownNode, definitionNode, depth, axisDisposition, [tupleFact]) #recurse\n # sort by header (which is likely to be typed dim value, for example)\n if (structuralNode.childStructuralNodes and\n any(sOC.header(lang=view.lang) for sOC in structuralNode.childStructuralNodes)):\n structuralNode.childStructuralNodes.sort(key=lambda childStructuralNode: childStructuralNode.header(lang=view.lang) or '')\n elif isinstance(definitionNode, ModelRuleDefinitionNode):\n for constraintSet in definitionNode.constraintSets.values():\n for aspect in constraintSet.aspectsCovered():\n if not constraintSet.aspectValueDependsOnVars(aspect):\n if aspect == Aspect.CONCEPT:\n conceptQname = definitionNode.aspectValue(view.rendrCntx, Aspect.CONCEPT)\n concept = view.modelXbrl.qnameConcepts.get(conceptQname)\n if concept is None or not concept.isItem or concept.isDimensionItem or concept.isHypercubeItem:\n view.modelXbrl.error(\"xbrlte:invalidQNameAspectValue\",\n _(\"Rule node %(xlinkLabel)s specifies concept %(concept)s does not refer to an existing primary item concept.\"),\n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel, concept=conceptQname)\n elif isinstance(aspect, QName):\n dim = view.modelXbrl.qnameConcepts.get(aspect)\n memQname = definitionNode.aspectValue(view.rendrCntx, aspect)\n mem = view.modelXbrl.qnameConcepts.get(memQname)\n if dim is None or not dim.isDimensionItem:\n view.modelXbrl.error(\"xbrlte:invalidQNameAspectValue\",\n _(\"Rule node %(xlinkLabel)s specifies dimension %(concept)s does not refer to an existing dimension concept.\"),\n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel, concept=aspect)\n if isinstance(memQname, QName) and (mem is None or not mem.isDomainMember):\n view.modelXbrl.error(\"xbrlte:invalidQNameAspectValue\",\n _(\"Rule node %(xlinkLabel)s specifies domain member %(concept)s does not refer to an existing domain member concept.\"),\n modelObject=definitionNode, xlinkLabel=definitionNode.xlinkLabel, concept=memQname)\n \n if axisDisposition == \"z\":\n if structuralNode.choiceStructuralNodes:\n choiceNodeIndex = view.zOrdinateChoices.get(definitionNode, 0)\n if isinstance(choiceNodeIndex, dict): # aspect entry for open node\n structuralNode.aspects = choiceNodeIndex\n structuralNode.choiceNodeIndex = -1\n elif choiceNodeIndex < len(structuralNode.choiceStructuralNodes):\n structuralNode.choiceNodeIndex = choiceNodeIndex\n else:\n structuralNode.choiceNodeIndex = 0\n view.zmostOrdCntx = structuralNode\n \n if not isCartesianProductExpanded or (axisDisposition == \"z\" and structuralNode.choiceStructuralNodes is not None):\n cartesianProductExpander(structuralNode, *cartesianProductNestedArgs)\n \n if not structuralNode.childStructuralNodes: # childless root ordinate, make a child to iterate in producing table\n subOrdContext = StructuralNode(structuralNode, breakdownNode, definitionNode)\n except ResolutionException as ex:\n if sys.version[0] >= '3':\n #import traceback\n #traceback.print_tb(ex.__traceback__)\n raise ex.with_traceback(ex.__traceback__) # provide original traceback information\n else:\n raise ex\n except Exception as ex:\n e = ResolutionException(\"arelle:resolutionException\",\n _(\"Exception in resolution of definition node %(node)s: %(error)s\"),\n modelObject=definitionNode, node=definitionNode.qname, error=str(ex)\n )\n if sys.version[0] >= '3':\n raise e.with_traceback(ex.__traceback__) # provide original traceback information\n else:\n raise e",
"metadata": "root.expandDefinition",
"header": "['module', '___EOS___']",
"index": 219
}
]
| [
{
"span": "subOrdContext ",
"start_line": 519,
"start_column": 20,
"end_line": 519,
"end_column": 33
}
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Unused import | ossxp-com/repo/subcmds/config.py | [
{
"content": "#\n# Copyright (C) 2010 [email protected]\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport sys\nfrom command import Command\nfrom git_command import GitCommand\nfrom error import GitError\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class Config(Command):\n common = True\n helpSummary = \"Get and set repo config\"\n helpUsage = \"\"\"\n%prog name [value]\n\"\"\"\n helpDescription = \"\"\"\n'%prog' get or set config of the manifest repository.\n\"\"\"\n\n",
"metadata": "root.Config",
"header": "['module', '___EOS___']",
"index": 20
},
{
"content": " def _Options(self, p):\n p.add_option('--bool',\n dest='bool', action='store_true',\n help='git config will ensure that the output is \"true\" or \"false\"')",
"metadata": "root.Config._Options",
"header": "['class', 'Config', '(', 'Command', ')', ':', '___EOS___']",
"index": 30
},
{
"content": " def Execute(self, opt, args):\n if not args:\n self.Usage()\n\n if len(args) > 1 and not args[0].startswith ('repo.'):\n print >>sys.stderr, \"error: can only set config name starts with 'repo.', but you provide '%s'.\" % args[0]\n sys.exit(1)\n\n if len(args) > 1 and args[0] == 'repo.mirror':\n print >>sys.stderr, \"fatal: reset repo.mirror is not supported on existing client.\"\n sys.exit(1)\n\n mp = self.manifest.manifestProject\n\n command = [\"config\"]\n\n if opt.bool:\n command.append('--bool')\n\n command.extend(args)\n\n if GitCommand(mp, command).Wait() != 0:\n return -1",
"metadata": "root.Config.Execute",
"header": "['class', 'Config', '(', 'Command', ')', ':', '___EOS___']",
"index": 35
}
]
| [
{
"span": "from error import GitError",
"start_line": 18,
"start_column": 0,
"end_line": 18,
"end_column": 26
}
]
| []
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Unused import | coreemu/core/daemon/core/services/dockersvc.py | [
{
"content": "#\n# CORE\n# Copyright (c)2014 the Boeing Company.\n# See the LICENSE file included in this distribution.\n#\n# authors: Stuart Marsden\n# Jeff Ahrenholz <[email protected]>\n#\n''' Docker service allows running docker containers within CORE nodes.\n\nThe running of Docker within a CORE node allows for additional extensibility to\nthe CORE services. This allows network applications and protocols to be easily\npackaged and run on any node.\n\nThis service that will add a new group to the services list. This\nwill have a service called Docker which will just start the docker service\nwithin the node but not run anything. It will also scan all docker images on\nthe host machine. If any are tagged with 'core' then they will be added as a\nservice to the Docker group. The image will then be auto run if that service is\nselected.\n\nThis requires a recent version of Docker. This was tested using a PPA on Ubuntu\n with version 1.2.0. The version in the standard Ubuntu repo is to old for \nthis purpose (we need --net host).\n\nIt also requires docker-py (https://pypi.python.org/pypi/docker-py) which can be\ninstalled with 'pip install docker-py'. This is used to interface with Docker\nfrom the python service.\n\nAn example use case is to pull an image from Docker.com. A test image has been\nuploaded for this purpose:\n\nsudo docker pull stuartmarsden/multicastping\n\nThis downloads an image which is based on Ubuntu 14.04 with python and twisted.\nIt runs a simple program that sends a multicast ping and listens and records\nany it receives.\n\nIn order for this to appear as a docker service it must be tagged with core.\nFind out the id by running 'sudo docker images'. You should see all installed\nimages and the one you want looks like this:\n\nstuartmarsden/multicastping latest 4833487e66d2 20 hours\nago 487 MB\n\nThe id will be different on your machine so use it in the following command:\n\nsudo docker tag 4833487e66d2 stuartmarsden/multicastping:core\n\nThis image will be listed in the services after we restart the core-daemon: \n\nsudo service core-daemon restart\n\nYou can set up a simple network with a number of PCs connected to a switch. Set\nthe stuartmarsden/multicastping service for all the PCs. When started they will\nall begin sending Multicast pings. \n\nIn order to see what is happening you can go in to the terminal of a node and\nlook at the docker log. Easy shorthand is:\n\ndocker logs $(docker ps -q)\n\nWhich just shows the log of the running docker container (usually just one per\nnode). I have added this as an observer node to my setup: Name: docker logs\nCommand: bash -c 'docker logs $(docker ps -q) | tail -20'\n\nSo I can just hover over to see the log which looks like this:\n\nDatagram 'Client: Ping' received from ('10.0.0.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.5.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.3.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.1.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.5.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.0.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.3.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.0.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.5.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.3.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.20', 8005)\nDatagram 'Client: Ping' received from ('10.0.1.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.4.21', 8005)\nDatagram 'Client: Ping' received from ('10.0.5.20', 8005)\n\nLimitations:\n\n1. Docker images must be downloaded on the host as usually a CORE node does not \n have access to the internet.\n2. Each node isolates running containers (keeps things simple)\n3. Recent version of docker needed so that --net host can be used. This does \n not further abstract the network within a node and allows multicast which \n is not enabled within Docker containers at the moment.\n4. The core-daemon must be restarted for new images to show up.\n5. A Docker-daemon is run within each node but the images are shared. This\n does mean that the daemon attempts to access an SQLlite database within the\n host. At startup all the nodes will try to access this and it will be locked\n for most due to contention. The service just does a hackish wait for 1 second\n and retry. This means all the docker containers can take a while to come up\n depending on how many nodes you have. \n\n'''\n\nimport os\nimport sys\ntry:\n from docker import Client\nexcept Exception:\n pass\n\nfrom core.service import CoreService, addservice\nfrom core.misc.ipaddr import IPv4Prefix, IPv6Prefix\n\n\naddservice(DockerService)\n\n# This auto-loads Docker images having a :core tag, adding them to the list\n# of services under the \"Docker\" group.\nif 'Client' in globals():\n client = Client(version='1.10')\n images = client.images()\n del client\nelse:\n images = []\nfor image in images:\n if u'<none>' in image['RepoTags'][0]:\n continue\n for repo in image['RepoTags']:\n if u':core' not in repo:\n continue\n dockerid = repo.encode('ascii','ignore').split(':')[0]\n SubClass = type('SubClass', (DockerService,),\n {'_name': dockerid, '_image': dockerid})\n addservice(SubClass)\ndel images\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class DockerService(CoreService):\n ''' This is a service which will allow running docker containers in a CORE\n node. \n '''\n _name = \"Docker\"\n _group = \"Docker\"\n _depends = ()\n _dirs = ('/var/lib/docker/containers/', '/run/shm', '/run/resolvconf',)\n _configs = ('docker.sh', )\n _startindex = 50\n _startup = ('sh docker.sh',)\n _shutdown = ('service docker stop', )\n # Container image to start\n _image = \"\"\n",
"metadata": "root.DockerService",
"header": "['module', '___EOS___']",
"index": 117
},
{
"content": " @classmethod\n def generateconfig(cls, node, filename, services):\n ''' Returns a string having contents of a docker.sh script that\n can be modified to start a specific docker image.\n '''\n cfg = \"#!/bin/sh\\n\"\n cfg += \"# auto-generated by Docker (docker.py)\\n\"\n # Docker likes to think it has DNS set up or it complains. \n # Unless your network was attached to the Internet this is\n # non-functional but hides error messages.\n cfg += 'echo \"nameserver 8.8.8.8\" > /run/resolvconf/resolv.conf\\n'\n # Starts the docker service. In Ubuntu this is docker.io; in other\n # distros may just be docker\n cfg += 'service docker start\\n'\n cfg += \"# you could add a command to start a image here eg:\\n\"\n if not cls._image:\n cfg += \"# docker run -d --net host --name coreDock <imagename>\\n\"\n else:\n cfg += \"\"\"\\\nresult=1\nuntil [ $result -eq 0 ]; do\n docker run -d --net host --name coreDock %s\n result=$?\n # this is to alleviate contention to docker's SQLite database\n sleep 0.3\ndone\n\"\"\" % (cls._image, )\n return cfg",
"metadata": "root.DockerService.generateconfig",
"header": "['class', 'DockerService', '(', 'CoreService', ')', ':', '___EOS___']",
"index": 132
}
]
| [
{
"span": "import os",
"start_line": 107,
"start_column": 0,
"end_line": 107,
"end_column": 9
},
{
"span": "import sys",
"start_line": 108,
"start_column": 0,
"end_line": 108,
"end_column": 10
},
{
"span": "from core.misc.ipaddr import IPv4Prefix, IPv6Prefix",
"start_line": 115,
"start_column": 0,
"end_line": 115,
"end_column": 51
}
]
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|
Unused local variable | CGATOxford/cgat/scripts/r_table2scatter.py | [
{
"content": "def main(argv=None):\n\n if argv is None:\n argv = sys.argv\n\n parser = E.OptionParser(\n version=\"%prog version: $Id: r_table2scatter.py 2782 2009-09-10 11:40:29Z andreas $\")\n\n parser.add_option(\"-c\", \"--columns\", dest=\"columns\", type=\"string\",\n help=\"columns to take from table. Choices are 'all', 'all-but-first' or a ','-separated list of columns.\")\n\n parser.add_option(\"--logscale\", dest=\"logscale\", type=\"string\",\n help=\"log-transform one or both axes [default=%Default].\")\n\n parser.add_option(\"-a\", \"--hardcopy\", dest=\"hardcopy\", type=\"string\",\n help=\"write hardcopy to file [default=%default].\",\n metavar=\"FILE\")\n\n parser.add_option(\"-f\", \"--file\", dest=\"input_filename\", type=\"string\",\n help=\"filename with table data [default=%default].\",\n metavar=\"FILE\")\n\n parser.add_option(\"-2\", \"--file2\", dest=\"input_filename2\", type=\"string\",\n help=\"additional data file [default=%default].\",\n metavar=\"FILE\")\n\n parser.add_option(\"-s\", \"--stats\", dest=\"statistics\", type=\"choice\",\n choices=(\"correlation\", \"spearman\", \"pearson\", \"count\"),\n help=\"statistical quantities to compute [default=%default]\",\n action=\"append\")\n\n parser.add_option(\"-p\", \"--plot\", dest=\"plot\", type=\"choice\",\n choices=(\"scatter\", \"pairs\", \"panel\", \"bar\", \"bar-stacked\",\n \"bar-besides\", \"1_vs_x\", \"matched\", \"boxplot\", \"scatter+marginal\",\n \"scatter-regression\"),\n help=\"plots to plot [default=%default]\",\n action=\"append\")\n\n parser.add_option(\"-t\", \"--threshold\", dest=\"threshold\", type=\"float\",\n help=\"min threshold to use for counting method [default=%default].\")\n\n parser.add_option(\"-o\", \"--colours\", dest=\"colours\", type=\"int\",\n help=\"column with colour information [default=%default].\")\n\n parser.add_option(\"-l\", \"--plot-labels\", dest=\"labels\", type=\"string\",\n help=\"column labels for x and y in matched plots [default=%default].\")\n\n parser.add_option(\"-d\", \"--add-diagonal\", dest=\"add_diagonal\", action=\"store_true\",\n help=\"add diagonal to plot [default=%default].\")\n\n parser.add_option(\"-e\", \"--plot-legend\", dest=\"legend\", type=\"int\",\n help=\"column with legend [default=%default].\")\n\n parser.add_option(\"-r\", \"--options\", dest=\"r_options\", type=\"string\",\n help=\"R plotting options [default=%default].\")\n\n parser.add_option(\"--format\", dest=\"format\", type=\"choice\",\n choices=(\"full\", \"sparse\"),\n help=\"output format [default=%default].\")\n\n parser.add_option(\"--title\", dest=\"title\", type=\"string\",\n help=\"\"\"plot title [default=%default].\"\"\")\n\n parser.add_option(\"\", \"--xrange\", dest=\"xrange\", type=\"string\",\n help=\"x viewing range of plot [default=%default].\")\n\n parser.add_option(\"\", \"--yrange\", dest=\"yrange\", type=\"string\",\n help=\"y viewing range of plot[default=%default].\")\n\n parser.add_option(\"--allow-empty-file\", dest=\"fail_on_empty\", action=\"store_false\",\n help=\"do not fail on empty input [default=%default].\")\n\n parser.add_option(\"--fail-on-empty\", dest=\"fail_on_empty\", action=\"store_true\",\n help=\"fail on empty input [default=%default].\")\n\n parser.set_defaults(\n hardcopy=None,\n input_filename=\"\",\n input_filename2=None,\n columns=\"all\",\n logscale=None,\n statistics=[],\n plot=[],\n threshold=0.0,\n labels=\"x,y\",\n colours=None,\n diagonal=False,\n legend=None,\n title=None,\n xrange=None,\n yrange=None,\n r_options=\"\",\n fail_on_empty=True,\n format=\"full\")\n\n (options, args) = E.Start(parser)\n\n if len(args) == 1 and not options.input_filename:\n options.input_filename = args[0]\n\n if options.columns not in (\"all\", \"all-but-first\"):\n options.columns = map(lambda x: int(x) - 1, options.columns.split(\",\"))\n\n if options.colours:\n options.colours -= 1\n if options.legend:\n options.legend -= 1\n\n table = {}\n headers = []\n\n # read data matrix\n if options.input_filename:\n lines = open(options.input_filename, \"r\").readlines()\n else:\n # note: this will not work for interactive viewing, but\n # creating hardcopy plots works.\n lines = sys.stdin.readlines()\n\n lines = filter(lambda x: x[0] != \"#\", lines)\n\n if len(lines) == 0:\n if options.fail_on_empty:\n raise IOError(\"no input\")\n E.warn(\"empty input\")\n E.Stop()\n return\n\n matrix, headers, colours, legend = readTable(lines,\n \"matrix\",\n take_columns=options.columns,\n headers=True,\n colours=options.colours,\n row_names=options.legend)\n\n if options.input_filename2:\n # read another matrix (should be of the same format.\n matrix2, headers2, colours2, legend2 = readTable(\n lines,\n \"matrix2\",\n take_columns=options.columns,\n headers=True,\n colours=options.colours,\n row_names=options.legend)\n\n R.assign(\"headers\", headers)\n\n ndata = R(\"\"\"length( matrix[,1] )\"\"\")[0]\n\n if options.loglevel >= 1:\n options.stdlog.write(\"# read matrix: %ix%i\\n\" % (len(headers), ndata))\n\n if colours:\n R.assign(\"colours\", colours)\n\n for method in options.statistics:\n\n if method == \"correlation\":\n cor = R.cor(matrix, use=\"pairwise.complete.obs\")\n writeMatrix(sys.stdout, cor, headers=headers, format=\"%5.2f\")\n\n elif method == \"pearson\":\n options.stdout.write(\"\\t\".join((\"var1\",\n \"var2\",\n \"coeff\",\n \"passed\",\n \"pvalue\",\n \"n\",\n \"method\",\n \"alternative\")) + \"\\n\")\n for x in range(len(headers) - 1):\n for y in range(x + 1, len(headers)):\n try:\n result = R(\n \"\"\"cor.test( matrix[,%i], matrix[,%i] )\"\"\" % (x + 1, y + 1))\n except rpy.RPyException, msg:\n E.warn(\"correlation not computed for columns %i(%s) and %i(%s): %s\" % (\n x, headers[x], y, headers[y], msg))\n options.stdout.write(\"%s\\t%s\\t%s\\t%s\\t%s\\t%i\\t%s\\t%s\\n\" %\n (headers[x], headers[y],\n \"na\",\n \"na\",\n \"na\",\n 0,\n \"na\",\n \"na\"))\n\n else:\n options.stdout.write(\n \"%s\\t%s\\t%6.4f\\t%s\\t%e\\t%i\\t%s\\t%s\\n\" %\n (headers[x], headers[y],\n result.rx2('estimate').rx2(\n 'cor')[0],\n Stats.getSignificance(\n float(result.rx2('p.value')[0])),\n result.rx2('p.value')[0],\n result.rx2('parameter').rx2(\n 'df')[0],\n result.rx2('method')[0],\n result.rx2('alternative')[0]))\n\n elif method == \"spearman\":\n options.stdout.write(\"\\t\".join((\"var1\", \"var2\",\n \"coeff\",\n \"passed\",\n \"pvalue\",\n \"method\",\n \"alternative\")) + \"\\n\")\n for x in range(len(headers) - 1):\n for y in range(x + 1, len(headers)):\n result = R(\n \"\"\"cor.test( matrix[,%i], matrix[,%i], method='spearman')\"\"\" % (x + 1, y + 1))\n options.stdout.write(\n \"%s\\t%s\\t%6.4f\\t%s\\t%e\\t%i\\t%s\\t%s\\n\" %\n (headers[x], headers[y],\n result['estimate']['rho'],\n Stats.getSignificance(float(result['p.value'])),\n result['p.value'],\n result['parameter']['df'],\n result['method'],\n result['alternative']))\n\n elif method == \"count\":\n # number of shared elements > threshold\n m, r, c = MatlabTools.ReadMatrix(open(options.input_filename, \"r\"),\n take=options.columns,\n headers=True)\n mask = numpy.greater(m, options.threshold)\n counts = numpy.dot(numpy.transpose(mask), mask)\n writeMatrix(options.stdout, counts, headers=c, format=\"%i\")\n\n if options.plot:\n\n # remove columns that are completely empty\n if \"pairs\" in options.plot:\n colsums = R('''colSums( is.na(matrix ))''')\n take = [x for x in range(len(colsums)) if colsums[x] != ndata]\n if take:\n E.warn(\"removing empty columns %s before plotting\" % str(take))\n matrix = R.subset(matrix, select=[x + 1 for x in take])\n R.assign(\"\"\"matrix\"\"\", matrix)\n headers = [headers[x] for x in take]\n if legend:\n legend = [headers[x] for x in take]\n\n if options.r_options:\n extra_options = \", %s\" % options.r_options\n else:\n extra_options = \"\"\n\n if options.legend is not None and len(legend):\n extra_options += \", legend=c('%s')\" % \"','\".join(legend)\n\n if options.labels:\n xlabel, ylabel = options.labels.split(\",\")\n extra_options += \", xlab='%s', ylab='%s'\" % (xlabel, ylabel)\n else:\n xlabel, ylabel = \"\", \"\"\n\n if options.colours:\n extra_options += \", col=colours\"\n\n if options.logscale:\n extra_options += \", log='%s'\" % options.logscale\n\n if options.xrange:\n extra_options += \", xlim=c(%f,%f)\" % tuple(\n map(float, options.xrange.split(\",\")))\n\n if options.yrange:\n extra_options += \", ylim=c(%f,%f)\" % tuple(\n map(float, options.yrange.split(\",\")))\n\n if options.hardcopy:\n if options.hardcopy.endswith(\".eps\"):\n R.postscript(options.hardcopy)\n elif options.hardcopy.endswith(\".png\"):\n R.png(options.hardcopy, width=1024, height=768, type=\"cairo\")\n elif options.hardcopy.endswith(\".jpg\"):\n R.jpg(options.hardcopy, width=1024, height=768, type=\"cairo\")\n\n for method in options.plot:\n\n if ndata < 100:\n point_size = \"1\"\n pch = \"o\"\n elif ndata < 1000:\n point_size = \"1\"\n pch = \"o\"\n else:\n point_size = \"0.5\"\n pch = \".\"\n\n if method == \"scatter\":\n R(\"\"\"plot( matrix[,1], matrix[,2], cex=%s, pch=\"o\" %s)\"\"\" % (\n point_size, extra_options))\n\n if method == \"scatter-regression\":\n R(\"\"\"plot( matrix[,1], matrix[,2], cex=%s, pch=\"o\" %s)\"\"\" % (\n point_size, extra_options))\n dat = R(\n \"\"\"dat <- data.frame(x = matrix[,1], y = matrix[,2])\"\"\")\n R(\n \"\"\"new <- data.frame(x = seq( min(matrix[,1]), max(matrix[,1]), (max(matrix[,1]) - min(matrix[,1])) / 100))\"\"\")\n mod = R(\"\"\"mod <- lm( y ~ x, dat)\"\"\")\n R(\"\"\"predict(mod, new, se.fit = TRUE)\"\"\")\n R(\"\"\"pred.w.plim <- predict(mod, new, interval=\"prediction\")\"\"\")\n R(\"\"\"pred.w.clim <- predict(mod, new, interval=\"confidence\")\"\"\")\n R(\n \"\"\"matpoints(new$x,cbind(pred.w.clim, pred.w.plim[,-1]), lty=c(1,2,2,3,3), type=\"l\")\"\"\")\n R.mtext(\n \"y = %f * x + %f, r=%6.4f, n=%i\" % (mod[\"coefficients\"][\"x\"],\n mod[\"coefficients\"][\n \"(Intercept)\"],\n R(\"\"\"cor( dat )[2]\"\"\"),\n ndata),\n 3,\n cex=1.0)\n\n elif method == \"pairs\":\n if options.add_diagonal:\n R(\n \"\"\"panel.hist <- function( x,y,... ) { points(x,y,...); abline(0,1); }\"\"\")\n else:\n R(\n \"\"\"panel.hist <- function( x,y,... ) { points(x,y,...); }\"\"\")\n\n # There used to be a argument na_action=\"na.omit\", but\n # removed this as there appeared error messages saying\n # \"na.action is not a graphical parameter\" and the\n # plots showed occasionally the wrong scale.\n # cex=point_size also caused trouble (error message:\n # \"X11 used font size 8 when 2 was requested\" or\n # similar)\n if options.colours:\n R.pairs(matrix,\n pch=pch,\n col=colours,\n main=options.title,\n panel=\"panel.hist\",\n labels=headers,\n cex_labels=2.0)\n else:\n R.pairs(matrix,\n pch=pch,\n panel=\"panel.hist\",\n main=options.title,\n labels=headers,\n cex_labels=2.0)\n\n elif method == \"boxplot\":\n extra_options += \",main='%s'\" % options.title\n\n # set vertical orientation\n if max([len(x) for x in headers]) > 40 / len(headers):\n # remove xlabel:\n extra_options = re.sub(\", xlab='[^']+'\", \"\", extra_options)\n extra_options += \", names.arg=headers, las=2\"\n R(\n \"\"\"op <- par(mar=c(11,4,4,2))\"\"\") # the 10 allows the names.arg below the barplot\n\n R(\"\"\"boxplot( matrix %s)\"\"\" % extra_options)\n\n elif method == \"bar\" or method == \"bar-stacked\":\n if not options.colours:\n extra_options += \", col=rainbow(5)\"\n\n # set vertical orientation\n if max([len(x) for x in headers]) > 40 / len(headers):\n # remove xlabel:\n extra_options = re.sub(\", xlab='[^']+'\", \"\", extra_options)\n extra_options += \", names.arg=headers, las=2\"\n R(\n \"\"\"op <- par(mar=c(11,4,4,2))\"\"\") # the 10 allows the names.arg below the barplot\n\n R(\"\"\"barplot(as.matrix(matrix), %s)\"\"\" % extra_options)\n\n elif method == \"bar-besides\":\n if not options.colours:\n extra_options += \", col=rainbow(%i)\" % ndata\n\n # set vertical orientation\n if max([len(x) for x in headers]) > 40 / len(headers):\n # remove xlabel:\n extra_options = re.sub(\", xlab='[^']+'\", \"\", extra_options)\n extra_options += \", names.arg=headers, las=2\"\n R(\n \"\"\"op <- par(mar=c(11,4,4,2))\"\"\") # the 10 allows the names.arg below the barplot\n\n R(\"\"\"barplot(as.matrix(matrix), beside=TRUE %s)\"\"\" %\n extra_options)\n\n elif method == \"scatter+marginal\":\n\n if options.title:\n # set the size of the outer margins - the title needs to be added at the end\n # after plots have been created\n R.par(oma=R.c(0, 0, 4, 0))\n\n R(\"\"\"matrix\"\"\")\n R(\"\"\"\nx <- matrix[,1];\ny <- matrix[,2];\nxhist <- hist(x, breaks=20, plot=FALSE);\nyhist <- hist(y, breaks=20, plot=FALSE);\ntop <- max(c(xhist$counts, yhist$counts));\nnf <- layout(matrix(c(2,0,1,3),2,2,byrow=TRUE), c(3,1), c(1,3), respect=TRUE );\npar(mar=c(3,3,1,1)) ;\nplot(x, y, cex=%s, pch=\"o\" %s) ;\npar(mar=c(0,3,1,1)) ;\nbarplot(xhist$counts, axes=FALSE, ylim=c(0, top), space=0 ) ;\npar(mar=c(3,0,1,1)) ;\ntitle(main='%s');\nbarplot(yhist$counts, axes=FALSE, xlim=c(0, top), space=0, horiz=TRUE ) ;\ntitle(main='%s');\n\"\"\" % (point_size, extra_options, xlabel, ylabel))\n\n if options.title:\n R.mtext(options.title, 3, outer=True, line=1, cex=1.5)\n\n elif method in (\"panel\", \"1_vs_x\", \"matched\"):\n\n if method == \"panel\":\n pairs = []\n for x in range(len(headers) - 1):\n for y in range(x + 1, len(headers)):\n pairs.append((x, y))\n\n elif method == \"1_vs_x\":\n pairs = []\n for x in range(1, len(headers)):\n pairs.append((0, x))\n\n # print matching columns\n elif method == \"matched\":\n pairs = []\n for x in range(len(headers) - 1):\n for y in range(x + 1, len(headers)):\n if headers[x] == headers[y]:\n pairs.append((x, y))\n break\n\n w = int(math.ceil(math.sqrt(len(pairs))))\n h = int(math.ceil(float(len(pairs)) / w))\n\n PosInf = 1e300000\n NegInf = -1e300000\n\n xlabel, ylabel = options.labels.split(\",\")\n\n R(\"\"\"layout(matrix(seq(1,%i), %i, %i, byrow = TRUE))\"\"\" %\n (w * h, w, h))\n for a, b in pairs:\n new_matrix = filter(lambda x:\n x[0] not in (float(\"nan\"), PosInf, NegInf) and\n x[1] not in (\n float(\"nan\"), PosInf, NegInf),\n zip(matrix[a].values()[0], matrix[b].values()[0]))\n try:\n R(\"\"\"plot(matrix[,%i], matrix[,%i], main='%s versus %s', cex=0.5, pch=\".\", xlab='%s', ylab='%s' )\"\"\" % (\n a + 1, b + 1, headers[b], headers[a], xlabel, ylabel))\n except rpy.RException, msg:\n print \"could not plot %s versus %s: %s\" % (headers[b], headers[a], msg)\n\n if options.hardcopy:\n R['dev.off']()\n\n E.info(\"matrix added as >matrix< in R.\")\n\n if not options.hardcopy:\n if options.input_filename:\n interpreter = code.InteractiveConsole(globals())\n interpreter.interact()\n else:\n E.info(\n \"can not start new interactive session as input has come from stdin.\")\n\n E.Stop()",
"metadata": "root.main",
"header": "['module', '___EOS___']",
"index": 165
}
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Unused import | lisa-lab/pylearn2/pylearn2/datasets/exc.py | [
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"content": "\"\"\"\n.. todo::\n\n WRITEME\n\"\"\"\n__author__ = \"Ian Goodfellow\"\n\"\"\"\nExceptions related to datasets\n\"\"\"\n\nfrom pylearn2.utils.exc import EnvironmentVariableError, NoDataPathError\nfrom pylearn2.utils.common_strings import environment_variable_essay\n\n\n",
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Unreachable code | gallantlab/pycortex/cortex/dataset/views.py | [
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"content": " def __init__(self, views, description=\"\"):\n for view in views:\n if not isinstance(view, Dataview):\n raise TypeError(\"Must be a View object!\")\n raise NotImplementedError\n self.views = views",
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Except block handles 'BaseException' | nasa/CrisisMappingToolkit/bin/test_active_contour.py | [
{
"content": "# -----------------------------------------------------------------------------\n# Copyright * 2014, United States Government, as represented by the\n# Administrator of the National Aeronautics and Space Administration. All\n# rights reserved.\n#\n# The Crisis Mapping Toolkit (CMT) v1 platform is licensed under the Apache\n# License, Version 2.0 (the \"License\"); you may not use this file except in\n# compliance with the License. You may obtain a copy of the License at\n# http://www.apache.org/licenses/LICENSE-2.0.\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT\n# WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the\n# License for the specific language governing permissions and limitations under\n# the License.\n# -----------------------------------------------------------------------------\n\n\nimport logging\nlogging.basicConfig(level=logging.ERROR)\ntry:\n import cmt.ee_authenticate\nexcept:\n import sys\n import os.path\n sys.path.append(os.path.join(os.path.dirname(os.path.realpath(__file__)), '..'))\n import cmt.ee_authenticate\ncmt.ee_authenticate.initialize()\n\nimport time\n\nimport cmt.domain\nfrom cmt.radar.active_contour import *\n\nimport sys\nimport PIL\nfrom PIL import ImageQt\nimport numpy\nfrom PyQt4 import QtGui, QtCore\napp = QtGui.QApplication(sys.argv)\n\n\n# from PIL import Image, ImageChops\n# import matplotlib.pyplot as plt\n# plt.imread('/home/smcmich1/fileTest.tif')\n# raise Exception('DEBUG')\n\n\nTHIS_FILE_FOLDER = os.path.dirname(os.path.realpath(__file__))\n\n\n# DOMAIN SELECTION IS HERE!\n# domain = cmt.domain.Domain(os.path.join(THIS_FILE_FOLDER, '..') + '/config/domains/uavsar/mississippi.xml')\n# domain = cmt.domain.Domain(os.path.join(THIS_FILE_FOLDER, '..') + '/config/domains/sentinel1/malawi_2015_1.xml')\n# domain = cmt.domain.Domain(os.path.join(THIS_FILE_FOLDER, '..') + '/config/domains/sentinel1/rome_small.xml')\n# domain = cmt.domain.Domain(os.path.join(THIS_FILE_FOLDER, '..') + '/config/domains/skybox/malawi_2015.xml')\n# domain = cmt.domain.Domain(os.path.join(THIS_FILE_FOLDER, '..') + '/config/domains/skybox/gloucester_2014_10.xml')\n# domain = cmt.domain.Domain(os.path.join(THIS_FILE_FOLDER, '..') + '/config/domains/skybox/sumatra_2014_10.xml')\ndomain = cmt.domain.Domain(os.path.join(THIS_FILE_FOLDER, '..') + '/config/domains/skybox/new_bedford_2014_10.xml')\n\n# result = active_contour(domain) # Run this to compute the final results!\n\n\n\n\nex = ActiveContourWindow(domain)\nsys.exit(app.exec_())\n",
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"content": " def __init__(self, domain):\n super(ActiveContourWindow, self).__init__()\n self.setGeometry(300, 300, 650, 650)\n self.setWindowTitle('Active Contour')\n self.domain = domain\n\n \"\"\"\n Fetch image and compute statistics\n sensor = domain.get_radar()\n detect_channel = domain.algorithm_params['water_detect_radar_channel']\n ee_image = sensor.image.select([detect_channel]).toUint16()\n if sensor.log_scale:\n statisics_image = ee_image.log10()\n else:\n statisics_image = ee_image\n (band_names, band_statistics) = compute_band_statistics(statisics_image, domain.ground_truth, domain.bounds)\n\n (self.local_image, self.snake) = initialize_active_contour(domain, ee_image, band_statistics, sensor.log_scale)\n\n Retrieve the local image bands and merge them into a fake RGB image\n channels = [self.local_image.get_image(detect_channel), self.local_image.get_image(detect_channel), self.local_image.get_image(detect_channel)]\n channel_images = [PIL.Image.fromarray(numpy.uint8(c*255/1200)) for c in channels] Convert from 16 bit to 8 bit\n self.display_image = PIL.Image.merge('RGB', channel_images)\n self.step = 1\n self.show()\n \"\"\"\n \"\"\"\n Initialize the contour with the selected sensor band\n sensor_name = 'uavsar'\n sensor = getattr(domain, sensor_name)\n ee_image = sensor.image.select(['hh'])\n\n # TODO: Make sure the name and statistics line up inside the class!\n # Compute statistics for each band -> Log10 needs to be applied here!\n (band_names, band_statistics) = compute_band_statistics(statisics_image, domain.ground_truth, domain.bounds)\n\n (self.local_image, self.snake) = initialize_active_contour(domain, ee_image, band_statistics, sensor.log_scale)\n\n # Retrieve the local image bands and merge them into a fake RGB image\n #channels = [self.local_image.get_image('hh'), self.local_image.get_image('hv'), self.local_image.get_image('vv')]\n channels = [self.local_image.get_image('hh'), self.local_image.get_image('hh'), self.local_image.get_image('hh')]\n channel_images = [PIL.Image.fromarray(numpy.uint8(c >> 8)) for c in channels] # Convert from 16 bit to 8 bit\n self.display_image = PIL.Image.merge('RGB', channel_images)\n self.step = 1\n self.show()\n \"\"\"\n\n SKYBOX_SCALE = 1200 / 256\n train_domain = domain.training_domain # For skybox data there is probably no earlier image to train off of\n try: # The Skybox data can be in one of two names\n sensor = domain.skybox\n trainSensor = train_domain.skybox\n except:\n sensor = domain.skybox_nir\n trainSensor = train_domain.skybox_nir\n ee_image = sensor.image.toUint16() # For Skybox, these are almost certainly the same image.\n ee_image_train = trainSensor.image.toUint16()\n\n if train_domain.training_features: # Train using features\n (band_names, band_statistics) = compute_band_statistics_features(ee_image_train, train_domain.training_features)\n else: # Train using training truth\n (band_names, band_statistics) = compute_band_statistics(ee_image_train, train_domain.ground_truth,\n train_domain.bounds)\n (self.local_image, self.snake) = initialize_active_contour(domain, ee_image, band_statistics, False)\n\n # Retrieve the local image bands and merge them into a fake RGB image\n channels = [self.local_image.get_image('Red'), self.local_image.get_image('Green'), self.local_image.get_image('Blue')]\n channel_images = [PIL.Image.fromarray(numpy.uint8(c / SKYBOX_SCALE)) for c in channels] # Convert from Skybox range to 8 bit\n self.display_image = PIL.Image.merge('RGB', channel_images)\n self.step = 1\n self.show()",
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"header": "['class', 'ActiveContourWindow', '(', 'QtGui', '.', 'QWidget', ')', ':', '___EOS___']",
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Redundant assignment | neuropoly/spinalcordtoolbox/dev/tamag/old/sct_denoising_nlm.py | [
{
"content": "def main(file_to_denoise, param, output_file_name) :\n\n path, file, ext = sct.extract_fname(file_to_denoise)\n\n img = nib.load(file_to_denoise)\n hdr_0 = img.get_header()\n\n data = img.get_data()\n aff = img.get_affine()\n\n\n # Process for manual detecting of background\n mask = data[:, :, :] > noise_threshold\n\n data = data[:, :, :]\n\n if '-std' in arguments:\n sigma = std_noise\n # Application of NLM filter to the image\n print 'Applying Non-local mean filter...'\n if param.parameter == 'Rician':\n den = nlmeans(data, sigma=sigma, mask=None, rician=True)\n else : den = nlmeans(data, sigma=sigma, mask=None, rician=False)\n else:\n # # Process for manual detecting of background\n # mask = data[:, :, :] > noise_threshold\n # data = data[:, :, :]\n sigma = np.std(data[~mask])\n\n print(\"vol size\", data.shape)\n\n\n # Application of NLM filter to the image\n print 'Applying Non-local mean filter...'\n if param.parameter == 'Rician':\n den = nlmeans(data, sigma=sigma, mask=mask, rician=True)\n else : den = nlmeans(data, sigma=sigma, mask=mask, rician=False)\n\n t = time()\n print(\"total time\", time() - t)\n print(\"vol size\", den.shape)\n\n\n axial_middle = data.shape[2] / 2\n\n before = data[:, :, axial_middle].T\n after = den[:, :, axial_middle].T\n\n diff_3d = np.absolute(den.astype('f8') - data.astype('f8'))\n difference = np.absolute(after.astype('f8') - before.astype('f8'))\n if '-std' not in arguments:\n difference[~mask[:, :, axial_middle].T] = 0\n\n if param.verbose == 2 :\n fig, ax = plt.subplots(1, 3)\n ax[0].imshow(before, cmap='gray', origin='lower')\n ax[0].set_title('before')\n ax[1].imshow(after, cmap='gray', origin='lower')\n ax[1].set_title('after')\n ax[2].imshow(difference, cmap='gray', origin='lower')\n ax[2].set_title('difference')\n for i in range(3):\n ax[i].set_axis_off()\n\n plt.show()\n plt.savefig('denoised_S0.png', bbox_inches='tight')\n\n #Save files\n img_denoise = nib.Nifti1Image(den, None, hdr_0)\n img_diff = nib.Nifti1Image(diff_3d, None, hdr_0)\n if output_file_name != None :\n output_file_name =output_file_name\n else: output_file_name = file + '_denoised' + ext\n nib.save(img_denoise,output_file_name)\n nib.save(img_diff, file + '_difference' +ext)",
"metadata": "root.main",
"header": "['module', '___EOS___']",
"index": 34
}
]
| [
{
"span": "output_file_name =output_file_name",
"start_line": 105,
"start_column": 8,
"end_line": 105,
"end_column": 42
}
]
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First parameter of a method is not named 'self' | snare/voltron/voltron/view.py | [
{
"content": " def do_render(error=None):\n pass",
"metadata": "root.VoltronView.do_render",
"header": "['class', 'VoltronView', '(', 'object', ')', ':', '___EOS___']",
"index": 271
}
]
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Unused import | Cimpress-MCP/JustReleaseNotes/JustReleaseNotes/artifacters/versioners/factory.py | [
{
"content": "import JustReleaseNotes\nfrom JustReleaseNotes import factory\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
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{
"content": "def create(name):\n return JustReleaseNotes.factory.createWithName(\"JustReleaseNotes.artifacters.versioners\", name)",
"metadata": "root.create",
"header": "['module', '___EOS___']",
"index": 3
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]
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Unused import | fp7-ofelia/ocf/expedient/src/python/expedient/clearinghouse/project/views.py | [
{
"content": "'''\n@author: jnaous\n'''\n\nfrom django.views.generic import list_detail, create_update, simple\nfrom models import Project\nfrom forms import ProjectCreateForm\nfrom django.http import HttpResponseRedirect, HttpResponseNotAllowed, Http404\nfrom django.core.urlresolvers import reverse\nfrom django.core.exceptions import MultipleObjectsReturned\nfrom django.shortcuts import get_object_or_404\nfrom expedient.clearinghouse.aggregate.models import Aggregate\nimport logging\nfrom expedient.common.utils.views import generic_crud\nfrom expedient.common.messaging.models import DatedMessage\nfrom django.db.models import Q\nfrom expedient.common.permissions.decorators import require_objs_permissions_for_view\nfrom expedient.common.permissions.shortcuts import give_permission_to, has_permission, must_have_permission\nfrom expedient.common.permissions.utils import get_queryset, get_user_from_req,\\\n get_queryset_from_class\nfrom expedient.clearinghouse.roles.models import ProjectRole,\\\n ProjectRoleRequest\nfrom expedient.common.permissions.models import ObjectPermission,\\\n PermissionOwnership, Permittee\nfrom expedient.clearinghouse.project.forms import AddMemberForm, MemberForm\nfrom expedient.common.utils.mail import send_mail # Wrapper for django.core.mail__send_mail\nfrom django.contrib.auth.models import User\nfrom django.contrib.contenttypes.models import ContentType\nimport uuid \nfrom django.conf import settings\nfrom django.contrib.auth.models import User\nimport ldap \nfrom django.contrib.sites.models import Site\n\n\nlogger = logging.getLogger(\"project.views\")\n\nTEMPLATE_PATH = \"project\"\n\nDEFAULT_OWNER_PERMISSIONS = [\n \"can_edit_project\", \"can_delete_project\", \"can_view_project\",\n \"can_add_members\", \"can_remove_members\",\n \"can_create_slices\", \"can_edit_slices\", \"can_delete_slices\",\n \"can_start_slices\", \"can_stop_slices\",\n \"can_add_aggregates\", \"can_remove_aggregates\",\n \"can_create_roles\", \"can_edit_roles\",\n]\n\n#DEFAULT_RESEARCHER_PERMISSIONS = [\n# \"can_view_project\",\n# \"can_create_slices\", \"can_edit_slices\", \"can_delete_slices\",\n# \"can_start_slices\", \"can_stop_slices\",\n#]\n\nDEFAULT_RESEARCHER_PERMISSIONS = [\n \"can_view_project\",\n \"can_create_slices\", \"can_edit_slices\", \n \"can_start_slices\", \"can_stop_slices\",\n]\n\n\n\n\n\n\n\n\n \n\n \n\n\n \n \n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "def list(request):\n '''Show list of projects'''\n \n qs = Project.objects.get_for_user(request.user).order_by('id')\n \n return list_detail.object_list(\n request,\n queryset=qs,\n template_name=TEMPLATE_PATH+\"/list.html\",\n template_object_name=\"project\",\n )",
"metadata": "root.list",
"header": "['module', '___EOS___']",
"index": 60
},
{
"content": "def list_details(request, proj_id):\n\t'''Obtain details (description, slices, users) for a given project'''\n \tproject = get_object_or_404(Project, id=proj_id)\n\treturn simple.direct_to_template(\n\t\trequest,\n\t\ttemplate=TEMPLATE_PATH+\"/list_details.html\",\n\t\textra_context={\"project\": project},\n\t)",
"metadata": "root.list_details",
"header": "['module', '___EOS___']",
"index": 72
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_delete_slices\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n methods=[\"GET\", \"POST\"],\n)\n@require_objs_permissions_for_view(\n perm_names=[\"can_delete_project\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n methods=[\"GET\", \"POST\"],\n)\ndef delete(request, proj_id):\n '''Delete the project'''\n project = get_object_or_404(Project, id=proj_id)\n if request.method == \"POST\":\n try:\n for s in project.slice_set.all():\n s.stop(request.user)\n project.delete()\n DatedMessage.objects.post_message_to_user(\n \"Successfully deleted project %s\" % project.name,\n request.user, msg_type=DatedMessage.TYPE_SUCCESS)\n except Exception as e:\n if isinstance(e,ldap.LDAPError):\n DatedMessage.objects.post_message_to_user(\n \"Project %s can not be deleted because there is no connection to LDAP\" % project.name,\n request.user, msg_type=DatedMessage.TYPE_ERROR)\n else:\n DatedMessage.objects.post_message_to_user(\n \"Problems ocurred while trying to delete project %s: %s\" % (project.name,str(e)),\n request.user, msg_type=DatedMessage.TYPE_ERROR)\n return HttpResponseRedirect(reverse(\"home\"))\n else:\n from vt_plugin.models.VM import VM\n if VM.objects.filter(projectId = project.uuid):\n DatedMessage.objects.post_message_to_user(\n \"Please delete all VMS inside project '%s' before deleting it\" % project.name,\n request.user, msg_type=DatedMessage.TYPE_ERROR)\n return detail(request, proj_id) \n #return HttpResponseRedirect(reverse(\"home\"))\n return simple.direct_to_template(\n request,\n template=TEMPLATE_PATH+\"/confirm_delete.html\",\n extra_context={\"object\": project},\n )",
"metadata": "root.delete",
"header": "['module', '___EOS___']",
"index": 81
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_view_project\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\ndef detail(request, proj_id):\n '''Show information about the project'''\n project = get_object_or_404(Project, id=proj_id)\n role_reqs = ProjectRoleRequest.objects.filter(\n giver=request.user, requested_role__project=project)\n # Structure with members, ids and roles to pass to project template\n permittees = project.members_as_permittees.all()\n member_roles = dict()\n for permittee in permittees:\n member_roles[str(permittee.object.username)] = {\"id\": str(permittee.object.id), \n\t\t\t\t\t\t\"roles\": permittee.projectrole_set.filter(project__name=project.name)}\n return list_detail.object_detail(\n request,\n Project.objects.all(),\n object_id=proj_id,\n template_name=TEMPLATE_PATH+\"/detail.html\",\n template_object_name=\"project\",\n extra_context={\n \"role_requests\": role_reqs,\n \"member_roles\": member_roles,\n \"breadcrumbs\": (\n (\"Home\", reverse(\"home\")),\n (\"Project %s\" % project.name, reverse(\"project_detail\", args=[project.id])),\n )\n }\n )",
"metadata": "root.detail",
"header": "['module', '___EOS___']",
"index": 128
},
{
"content": "def create_project_roles(project, user):\n \"\"\"Create the default roles in a project.\"\"\"\n\n owner_role = ProjectRole.objects.create(\n name=\"owner\",\n description=\\\n \"The 'owner' role is a special role that has permission to \"\n \"do everything \"\n \"in the project and can give the permissions to everyone. \"\n \"In addition every time a slice is created, users with \"\n \"the 'owner' role get full permissions over those.\",\n project=project,\n )\n for permission in DEFAULT_OWNER_PERMISSIONS:\n obj_perm = ObjectPermission.objects.\\\n get_or_create_for_object_or_class(\n permission, project)[0]\n owner_role.obj_permissions.add(obj_perm)\n \n researcher_role = ProjectRole.objects.create(\n name=\"researcher\",\n description=\\\n \"By default users with the 'researcher' role can only \"\n \"create slices and \"\n \"delete slices they created. They have full permissions over \"\n \"their created slices.\",\n project=project,\n )\n for permission in DEFAULT_RESEARCHER_PERMISSIONS:\n obj_perm = ObjectPermission.objects.\\\n get_or_create_for_object_or_class(\n permission, project)[0]\n researcher_role.obj_permissions.add(obj_perm)\n \n # give the creator of the project an owner role\n owner_role.give_to_permittee(\n user,\n can_delegate=True,\n )",
"metadata": "root.create_project_roles",
"header": "['module', '___EOS___']",
"index": 160
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_create_project\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset_from_class(Project),\n)\ndef create(request):\n '''Create a new project'''\n \n def post_save(instance, created):\n # Create default roles in the project\n\t#Generate UUID: fixes caching problem on model default value\n\tinstance.uuid = uuid.uuid4()\n\tcreate_project_roles(instance, request.user)\n\tinstance.save()\n\t#if settings.LDAP_STORE_PROJECTS:\n\t# instance.sync_netgroup_ldap()\n \n def redirect(instance):\n return reverse(\"project_detail\", args=[instance.id])\n \n try:\n return generic_crud(\n request, None,\n model=Project,\n form_class=ProjectCreateForm,\n template=TEMPLATE_PATH+\"/create_update.html\",\n post_save=post_save,\n redirect=redirect,\n template_object_name=\"project\",\n extra_context={\n \"breadcrumbs\": (\n (\"Home\", reverse(\"home\")),\n (\"Create Project\", request.path),\n ),\n },\n success_msg = lambda instance: \"Successfully created project %s.\" % instance.name,\n )\n except Exception as e:\n if isinstance(e,ldap.LDAPError):\n DatedMessage.objects.post_message_to_user(\n \"Project has been created but only locally since LDAP is not reachable. You will not be able to add users to the project until connection is restored.\",\n request.user, msg_type=DatedMessage.TYPE_ERROR)\n else:\n DatedMessage.objects.post_message_to_user(\n \"Project may have been created, but some problem ocurred: %s\" % str(e),\n request.user, msg_type=DatedMessage.TYPE_ERROR)\n return HttpResponseRedirect(reverse(\"home\"))",
"metadata": "root.create",
"header": "['module', '___EOS___']",
"index": 200
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_view_project\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\n@require_objs_permissions_for_view(\n perm_names=[\"can_edit_project\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n methods=[\"POST\"],\n)\ndef update(request, proj_id, iframe=False):\n '''Update information about a project'''\n \n project = get_object_or_404(Project, id=proj_id)\n must_have_permission(request.user, project, \"can_edit_project\") \n\n def redirect(instance):\n if iframe:\n return reverse(\"project_list\")\n else:\n return reverse(\"project_detail\", args=[instance.id])\n \n return generic_crud(\n request, proj_id,\n model=Project,\n form_class=ProjectCreateForm,\n template=TEMPLATE_PATH+\"/create_update.html\",\n redirect=redirect,\n template_object_name=\"project\",\n extra_context={\n \"breadcrumbs\": (\n (\"Home\", reverse(\"home\")),\n (\"Project %s\" % project.name, reverse(\"project_detail\", args=[project.id])),\n (\"Update Info\", request.path),\n ),\n },\n success_msg = lambda instance: \"Successfully updated project %s.\" % instance.name,\n )",
"metadata": "root.update",
"header": "['module', '___EOS___']",
"index": 250
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_add_aggregates\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\ndef add_aggregate(request, proj_id):\n '''Add/remove aggregates to/from a project'''\n \n project = get_object_or_404(Project, id=proj_id)\n aggregate_list = Aggregate.objects.exclude(\n id__in=project.aggregates.all().values_list(\"id\", flat=True))\n \n if request.method == \"GET\":\n return simple.direct_to_template(\n request, template=TEMPLATE_PATH+\"/add_aggregates.html\",\n extra_context={\n \"aggregate_list\": aggregate_list,\n \"project\": project,\n \"breadcrumbs\": (\n (\"Home\", reverse(\"home\")),\n (\"Project %s\" % project.name, reverse(\"project_detail\", args=[project.id])),\n (\"Add Project Aggregates\", request.path),\n ),\n }\n )\n \n elif request.method == \"POST\":\n # check which submit button was pressed\n try:\n agg_id = int(request.POST.get(\"id\", 0))\n except ValueError:\n raise Http404\n\n if agg_id not in aggregate_list.values_list(\"id\", flat=True):\n raise Http404\n\n aggregate = get_object_or_404(Aggregate, id=agg_id).as_leaf_class()\n\n #Look for the users in the project and give them permission to use the new AM.\n for member in project.members.exclude(is_superuser=True):\n #if not has_permission(member, project, \"can_delete_slices\"):\n give_permission_to(\"can_use_aggregate\", aggregate, member, giver=None, can_delegate=False)\n\n return HttpResponseRedirect(aggregate.add_to_project(\n project, reverse(\"project_add_agg\", args=[proj_id])))\n else:\n return HttpResponseNotAllowed(\"GET\", \"POST\")",
"metadata": "root.add_aggregate",
"header": "['module', '___EOS___']",
"index": 290
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_add_aggregates\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\ndef update_aggregate(request, proj_id, agg_id):\n '''Update any info stored at the aggregate'''\n project = get_object_or_404(Project, id=proj_id)\n aggregate = get_object_or_404(\n Aggregate, id=agg_id, id__in=project.aggregates.values_list(\n \"id\", flat=True)).as_leaf_class()\n\n if request.method == \"POST\":\n return HttpResponseRedirect(aggregate.add_to_project(\n project, reverse(\"project_detail\", args=[proj_id])))\n else:\n return HttpResponseNotAllowed([\"POST\"])",
"metadata": "root.update_aggregate",
"header": "['module', '___EOS___']",
"index": 338
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_remove_aggregates\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\ndef remove_aggregate(request, proj_id, agg_id):\n \"\"\"Remove the aggregate from the project\"\"\"\n project = get_object_or_404(Project, id=proj_id)\n aggregate = get_object_or_404(\n Aggregate, id=agg_id, id__in=project.aggregates.values_list(\n \"id\", flat=True)).as_leaf_class()\n\n if request.method == \"POST\":\n try:\n return HttpResponseRedirect(aggregate.remove_from_project(\n project, reverse(\"project_detail\", args=[proj_id])))\n except MultipleObjectsReturned as e:\n DatedMessage.objects.post_message_to_user(\n str(e), request.user, msg_type=DatedMessage.TYPE_ERROR)\n except:\n pass\n # If any error occurs, redirect to slice detail page\n return HttpResponseRedirect(\n reverse('project_detail', args=[proj_id]))\n else:\n return HttpResponseNotAllowed([\"POST\"])",
"metadata": "root.remove_aggregate",
"header": "['module', '___EOS___']",
"index": 356
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_add_members\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\ndef add_member(request, proj_id):\n \"\"\"Add a member to the project\"\"\"\n \n project = get_object_or_404(Project, id=proj_id)\n \n if request.method == \"POST\":\n form = AddMemberForm(project=project, giver=request.user, data=request.POST)\n if form.is_valid():\n user = User.objects.get(id = request.POST['user'] )\n form.save()\n try:\n #Sync LDAP\n project.save()\n except:\n logger.warning(\"User '%s' may have not been added to project '%s'. It could be a bug within LDAP.\" % (user.username, project.name))\n DatedMessage.objects.post_message_to_user(\n \"User '%s' may not own the requested permissions. It could be a bug within LDAP.\" % user.username,\n request.user, msg_type=DatedMessage.TYPE_ERROR)\n return HttpResponseRedirect(reverse(\"project_detail\", args=[proj_id]))\n #Send mail notification to the user\n roles = ', '.join(repr(role.encode('ascii')) for role in ProjectRole.objects.filter( id__in = request.POST.getlist('roles')).values_list('name', flat=True))\n #XXX: Not sure about this... maybe give_permission_to...\n for aggregate in project._get_aggregates():\n if not has_permission(user, aggregate, \"can_use_aggregate\"):\n aggregate.add_to_user(user,\"/\")\n try:\n # Get project detail URL to send via e-mail\n from expedient.clearinghouse.project import urls\n project_detail_url = reverse(\"project_detail\", args=[project.id]) or \"/\"\n # No \"https://\" check should be needed if settings are OK\n site_domain_url = \"https://\" + Site.objects.get_current().domain + project_detail_url\n send_mail(\n settings.EMAIL_SUBJECT_PREFIX + \"Project %s membership notification\" % (project.name),\n \"You have been added to project '%s' as a user with the following roles: %s.\\nYou may start experimenting now by going to %s\\n\\n\" % (project.name, roles, site_domain_url),\n from_email=settings.DEFAULT_FROM_EMAIL,\n recipient_list=[user.email],\n )\n except Exception as e:\n print \"[WARNING] User e-mail notification could not be sent. Details: %s\" % str(e)\n \n return HttpResponseRedirect(reverse(\"project_detail\", args=[proj_id]))\n\n else:\n form = AddMemberForm(project=project, giver=request.user)\n \n return simple.direct_to_template(\n request,\n template=TEMPLATE_PATH+\"/add_member.html\",\n extra_context={\n \"form\": form,\n \"project\": project,\n \"breadcrumbs\": (\n (\"Home\", reverse(\"home\")),\n (\"Project %s\" % project.name, reverse(\"project_detail\", args=[project.id])),\n (\"Add Member\", request.path),\n ),\n },\n )",
"metadata": "root.add_member",
"header": "['module', '___EOS___']",
"index": 383
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_add_members\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\ndef update_member(request, proj_id, user_id):\n \"\"\"Update a member's roles\"\"\"\n \n project = get_object_or_404(Project, id=proj_id)\n member = get_object_or_404(User, id=user_id)\n \n if request.method == \"POST\":\n form = MemberForm(\n project=project, user=member,\n giver=request.user, data=request.POST)\n \n if form.is_valid():\n form.save()\n return HttpResponseRedirect(\n reverse(\"project_detail\", args=[proj_id]))\n\n else:\n form = MemberForm(\n project=project, user=member,\n giver=request.user)\n \n return simple.direct_to_template(\n request,\n template=TEMPLATE_PATH+\"/update_member.html\",\n extra_context={\n \"form\": form,\n \"project\": project,\n \"member\": member,\n \"breadcrumbs\": (\n (\"Home\", reverse(\"home\")),\n (\"Project %s\" % project.name, reverse(\"project_detail\", args=[project.id])),\n (\"Update Member %s\" % member.username, request.path),\n ),\n },\n )",
"metadata": "root.update_member",
"header": "['module', '___EOS___']",
"index": 447
},
{
"content": "@require_objs_permissions_for_view(\n perm_names=[\"can_remove_members\"],\n permittee_func=get_user_from_req,\n target_func=get_queryset(Project, \"proj_id\"),\n)\ndef remove_member(request, proj_id, user_id):\n \"\"\"Kick a member out by stripping his roles\"\"\"\n \n project = get_object_or_404(Project, id=proj_id)\n member = get_object_or_404(User, id=user_id)\n\n if request.method == \"POST\":\n member = Permittee.objects.get_as_permittee(member)\n # Remove the roles\n for role in ProjectRole.objects.filter(project=project):\n role.remove_from_permittee(member)\n # Remove other permissions\n PermissionOwnership.objects.delete_all_for_target(project, member)\n\n #Remove can_use_aggregate if user is not member of any other project using the aggregates of this project\n for projectAgg in project._get_aggregates():\n aggNotUsedAnymoreByMember=1\n for p in Project.objects.exclude(id=project.id):\n if projectAgg in p._get_aggregates() and unicode(member) in p.members.values_list(\"username\", flat=True):\n aggNotUsedAnymoreByMember=0\n break;\n if aggNotUsedAnymoreByMember and not has_permission(member, projectAgg, \"can_use_aggregate\"):\n projectAgg.remove_from_user(member,\"/\")\n\n try:\n #Sync LDAP\n project.save()\n except:\n logger.warning(\"User '%s' may have not been deleted from project '%s'. It could be a bug within LDAP.\" % (member.object.username, project.name))\n\n return HttpResponseRedirect(\n reverse(\"project_detail\", args=[proj_id]))\n \n return simple.direct_to_template(\n request,\n template=TEMPLATE_PATH+\"/remove_member.html\",\n extra_context={\n \"project\": project,\n \"member\": member,\n \"breadcrumbs\": (\n (\"Home\", reverse(\"home\")),\n (\"Project %s\" % project.name, reverse(\"project_detail\", args=[project.id])),\n (\"Remove Member %s\" % member.username, request.path),\n ),\n },\n )",
"metadata": "root.remove_member",
"header": "['module', '___EOS___']",
"index": 488
}
]
| [
{
"span": "from django.views.generic import list_detail, create_update, simple",
"start_line": 4,
"start_column": 0,
"end_line": 4,
"end_column": 67
},
{
"span": "from django.db.models import Q",
"start_line": 15,
"start_column": 0,
"end_line": 15,
"end_column": 30
},
{
"span": "from django.contrib.contenttypes.models import ContentType",
"start_line": 27,
"start_column": 0,
"end_line": 27,
"end_column": 58
}
]
| []
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Unused local variable | AppScale/appscale/AppServer/lib/django-1.5/django/contrib/gis/utils/srs.py | [
{
"content": "def add_srs_entry(srs, auth_name='EPSG', auth_srid=None, ref_sys_name=None,\n database=None):\n \"\"\"\n This function takes a GDAL SpatialReference system and adds its information\n to the `spatial_ref_sys` table of the spatial backend. Doing this enables\n database-level spatial transformations for the backend. Thus, this utility\n is useful for adding spatial reference systems not included by default with\n the backend -- for example, the so-called \"Google Maps Mercator Projection\"\n is excluded in PostGIS 1.3 and below, and the following adds it to the\n `spatial_ref_sys` table:\n\n >>> from django.contrib.gis.utils import add_srs_entry\n >>> add_srs_entry(900913)\n\n Keyword Arguments:\n auth_name:\n This keyword may be customized with the value of the `auth_name` field.\n Defaults to 'EPSG'.\n\n auth_srid:\n This keyword may be customized with the value of the `auth_srid` field.\n Defaults to the SRID determined by GDAL.\n\n ref_sys_name:\n For SpatiaLite users only, sets the value of the `ref_sys_name` field.\n Defaults to the name determined by GDAL.\n\n database:\n The name of the database connection to use; the default is the value\n of `django.db.DEFAULT_DB_ALIAS` (at the time of this writing, it's value\n is 'default').\n \"\"\"\n from django.db import connections, DEFAULT_DB_ALIAS\n if not database:\n database = DEFAULT_DB_ALIAS\n connection = connections[database]\n\n if not hasattr(connection.ops, 'spatial_version'):\n raise Exception('The `add_srs_entry` utility only works '\n 'with spatial backends.')\n if connection.ops.oracle or connection.ops.mysql:\n raise Exception('This utility does not support the '\n 'Oracle or MySQL spatial backends.')\n SpatialRefSys = connection.ops.spatial_ref_sys()\n\n # If argument is not a `SpatialReference` instance, use it as parameter\n # to construct a `SpatialReference` instance.\n if not isinstance(srs, SpatialReference):\n srs = SpatialReference(srs)\n\n if srs.srid is None:\n raise Exception('Spatial reference requires an SRID to be '\n 'compatible with the spatial backend.')\n\n # Initializing the keyword arguments dictionary for both PostGIS\n # and SpatiaLite.\n kwargs = {'srid' : srs.srid,\n 'auth_name' : auth_name,\n 'auth_srid' : auth_srid or srs.srid,\n 'proj4text' : srs.proj4,\n }\n\n # Backend-specific fields for the SpatialRefSys model.\n if connection.ops.postgis:\n kwargs['srtext'] = srs.wkt\n if connection.ops.spatialite:\n kwargs['ref_sys_name'] = ref_sys_name or srs.name\n\n # Creating the spatial_ref_sys model.\n try:\n # Try getting via SRID only, because using all kwargs may\n # differ from exact wkt/proj in database.\n sr = SpatialRefSys.objects.using(database).get(srid=srs.srid)\n except SpatialRefSys.DoesNotExist:\n sr = SpatialRefSys.objects.using(database).create(**kwargs)",
"metadata": "root.add_srs_entry",
"header": "['module', '___EOS___']",
"index": 2
}
]
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{
"span": "sr ",
"start_line": 74,
"start_column": 8,
"end_line": 74,
"end_column": 10
},
{
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"start_line": 76,
"start_column": 8,
"end_line": 76,
"end_column": 10
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"content": " def connectionMade(self):\n \"\"\"\n \"\"\"\n self.interacting = None\n self.cmdbuf = ''\n self.honeypotFactory = self.factory.honeypotFactory\n\n # Someone tell me if i'm doing this wrong?\n d = self.do(telnet.LINEMODE)\n self.requestNegotiation(telnet.LINEMODE, telnet.LINEMODE_EDIT + '\\0')\n self.will(telnet.ECHO)\n\n self.transport.write('*** cowrie session management console ***\\r\\n')\n self.cmd_help()",
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"header": "['class', 'Interact', '(', 'telnet', '.', 'Telnet', ')', ':', '___EOS___']",
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Unused import | fordham-css/ptp/vis-api-server.py | [
{
"content": "from flask import Flask, url_for, json\nfrom flask import request, jsonify\nfrom functools import wraps\nimport time\nimport sys\nimport datetime\napp = Flask(__name__)\n\nimport logging\nfile_handler = logging.FileHandler('server.log')\napp.logger.addHandler(file_handler)\napp.logger.setLevel(logging.INFO)\n\n\nfrom utils import *\nimport redis\n\nr = redis.Redis(host='localhost',port=6669)\nr.set_response_callback('SMEMBERS', list)\n\nstock = sys.argv[1]\n\n \nif __name__ == '__main__':\n\tapp.run(debug=True,port=5000)",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "@app.route('/api/last_row', methods = ['GET'])\ndef last_row():\n \n # Make timestamp\n timestamp = datetime.datetime.fromtimestamp(time.time()).strftime('%Y-%m-%d %H:%M:%S')\n \n # Log init request\n app.logger.info('[+] [' + timestamp + '] ' + 'GET request recieved.')\n \n # Prepare bot response\n #therapy(parse_user_says(user_says))\n \n row = get_range_row(stock,-1,-1,r)[0]\n \n return jsonify({'stock':stock,'stamp':row[0],'price':row[1],'bid':row[2],'ask':row[3]})",
"metadata": "root.last_row",
"header": "['module', '___EOS___']",
"index": 22
}
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| [
{
"span": "from flask import Flask, url_for, json",
"start_line": 0,
"start_column": 0,
"end_line": 0,
"end_column": 38
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{
"span": "from flask import request, jsonify",
"start_line": 1,
"start_column": 0,
"end_line": 1,
"end_column": 34
},
{
"span": "from functools import wraps",
"start_line": 2,
"start_column": 0,
"end_line": 2,
"end_column": 27
}
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Unused import | AnyMesh/anyMesh-Python/example/urwid/main_loop.py | [
{
"content": "#!/usr/bin/python\n#\n# Urwid main loop code\n# Copyright (C) 2004-2012 Ian Ward\n# Copyright (C) 2008 Walter Mundt\n# Copyright (C) 2009 Andrew Psaltis\n#\n# This library is free software; you can redistribute it and/or\n# modify it under the terms of the GNU Lesser General Public\n# License as published by the Free Software Foundation; either\n# version 2.1 of the License, or (at your option) any later version.\n#\n# This library is distributed in the hope that it will be useful,\n# but WITHOUT ANY WARRANTY; without even the implied warranty of\n# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU\n# Lesser General Public License for more details.\n#\n# You should have received a copy of the GNU Lesser General Public\n# License along with this library; if not, write to the Free Software\n# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA\n#\n# Urwid web site: http://excess.org/urwid/\n\n\nimport time\nimport heapq\nimport select\nimport fcntl\nimport os\nfrom functools import wraps\nfrom weakref import WeakKeyDictionary\n\nfrom urwid.util import is_mouse_event\nfrom urwid.compat import PYTHON3\nfrom urwid.command_map import command_map, REDRAW_SCREEN\nfrom urwid.wimp import PopUpTarget\nfrom urwid import signals\nfrom urwid.display_common import INPUT_DESCRIPTORS_CHANGED\n\nPIPE_BUFFER_READ_SIZE = 4096 # can expect this much on Linux, so try for that\n\n\n\n\n\n\n\n\n\n\ntry:\n from twisted.internet.abstract import FileDescriptor\nexcept ImportError:\n FileDescriptor = object\n\n\n\n\n\n\n\n\nif __name__=='__main__':\n _test()\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class ExitMainLoop(Exception):\n \"\"\"\n When this exception is raised within a main loop the main loop\n will exit cleanly.\n \"\"\"\n pass",
"metadata": "root.ExitMainLoop",
"header": "['module', '___EOS___']",
"index": 41
},
{
"content": "class MainLoop(object):\n \"\"\"\n This is the standard main loop implementation for a single interactive\n session.\n\n :param widget: the topmost widget used for painting the screen, stored as\n :attr:`widget` and may be modified. Must be a box widget.\n :type widget: widget instance\n\n :param palette: initial palette for screen\n :type palette: iterable of palette entries\n\n :param screen: screen to use, default is a new :class:`raw_display.Screen`\n instance; stored as :attr:`screen`\n :type screen: display module screen instance\n\n :param handle_mouse: ``True`` to ask :attr:`.screen` to process mouse events\n :type handle_mouse: bool\n\n :param input_filter: a function to filter input before sending it to\n :attr:`.widget`, called from :meth:`.input_filter`\n :type input_filter: callable\n\n :param unhandled_input: a function called when input is not handled by\n :attr:`.widget`, called from :meth:`.unhandled_input`\n :type unhandled_input: callable\n\n :param event_loop: if :attr:`.screen` supports external an event loop it may be\n given here, default is a new :class:`SelectEventLoop` instance;\n stored as :attr:`.event_loop`\n :type event_loop: event loop instance\n\n :param pop_ups: `True` to wrap :attr:`.widget` with a :class:`PopUpTarget`\n instance to allow any widget to open a pop-up anywhere on the screen\n :type pop_ups: boolean\n\n\n .. attribute:: screen\n\n The screen object this main loop uses for screen updates and reading input\n\n .. attribute:: event_loop\n\n The event loop object this main loop uses for waiting on alarms and IO\n \"\"\"\n\n\n widget = property(lambda self:self._widget, _set_widget, doc=\n \"\"\"\n Property for the topmost widget used to draw the screen.\n This must be a box widget.\n \"\"\")\n\n pop_ups = property(lambda self:self._pop_ups, _set_pop_ups)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.MainLoop",
"header": "['module', '___EOS___']",
"index": 48
},
{
"content": " def __init__(self, widget, palette=(), screen=None,\n handle_mouse=True, input_filter=None, unhandled_input=None,\n event_loop=None, pop_ups=False):\n self._widget = widget\n self.handle_mouse = handle_mouse\n self.pop_ups = pop_ups # triggers property setting side-effect\n\n if not screen:\n from urwid import raw_display\n screen = raw_display.Screen()\n\n if palette:\n screen.register_palette(palette)\n\n self.screen = screen\n self.screen_size = None\n\n self._unhandled_input = unhandled_input\n self._input_filter = input_filter\n\n if not hasattr(screen, 'get_input_descriptors'\n ) and event_loop is not None:\n raise NotImplementedError(\"screen object passed \"\n \"%r does not support external event loops\" % (screen,))\n if event_loop is None:\n event_loop = SelectEventLoop()\n self.event_loop = event_loop\n\n self._input_timeout = None\n self._watch_pipes = {}",
"metadata": "root.MainLoop.__init__",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 94
},
{
"content": " def _set_widget(self, widget):\n self._widget = widget\n if self.pop_ups:\n self._topmost_widget.original_widget = self._widget\n else:\n self._topmost_widget = self._widget",
"metadata": "root.MainLoop._set_widget",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 125
},
{
"content": " def _set_pop_ups(self, pop_ups):\n self._pop_ups = pop_ups\n if pop_ups:\n self._topmost_widget = PopUpTarget(self._widget)\n else:\n self._topmost_widget = self._widget",
"metadata": "root.MainLoop._set_pop_ups",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 137
},
{
"content": " def set_alarm_in(self, sec, callback, user_data=None):\n \"\"\"\n Schedule an alarm in *sec* seconds that will call *callback* from the\n within the :meth:`run` method.\n\n :param sec: seconds until alarm\n :type sec: float\n :param callback: function to call with two parameters: this main loop\n object and *user_data*\n :type callback: callable\n \"\"\"\n def cb():\n callback(self, user_data)\n return self.event_loop.alarm(sec, cb)",
"metadata": "root.MainLoop.set_alarm_in",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 145
},
{
"content": " def set_alarm_at(self, tm, callback, user_data=None):\n \"\"\"\n Schedule an alarm at *tm* time that will call *callback* from the\n within the :meth:`run` function. Returns a handle that may be passed to\n :meth:`remove_alarm`.\n\n :param tm: time to call callback e.g. ``time.time() + 5``\n :type tm: float\n :param callback: function to call with two parameters: this main loop\n object and *user_data*\n :type callback: callable\n \"\"\"\n def cb():\n callback(self, user_data)\n return self.event_loop.alarm(tm - time.time(), cb)",
"metadata": "root.MainLoop.set_alarm_at",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 160
},
{
"content": " def remove_alarm(self, handle):\n \"\"\"\n Remove an alarm. Return ``True`` if *handle* was found, ``False``\n otherwise.\n \"\"\"\n return self.event_loop.remove_alarm(handle)",
"metadata": "root.MainLoop.remove_alarm",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 176
},
{
"content": " def watch_pipe(self, callback):\n \"\"\"\n Create a pipe for use by a subprocess or thread to trigger a callback\n in the process/thread running the main loop.\n\n :param callback: function taking one parameter to call from within\n the process/thread running the main loop\n :type callback: callable\n\n This method returns a file descriptor attached to the write end of a\n pipe. The read end of the pipe is added to the list of files\n :attr:`event_loop` is watching. When data is written to the pipe the\n callback function will be called and passed a single value containing\n data read from the pipe.\n\n This method may be used any time you want to update widgets from\n another thread or subprocess.\n\n Data may be written to the returned file descriptor with\n ``os.write(fd, data)``. Ensure that data is less than 512 bytes (or 4K\n on Linux) so that the callback will be triggered just once with the\n complete value of data passed in.\n\n If the callback returns ``False`` then the watch will be removed from\n :attr:`event_loop` and the read end of the pipe will be closed. You\n are responsible for closing the write end of the pipe with\n ``os.close(fd)``.\n \"\"\"\n pipe_rd, pipe_wr = os.pipe()\n fcntl.fcntl(pipe_rd, fcntl.F_SETFL, os.O_NONBLOCK)\n watch_handle = None\n\n def cb():\n data = os.read(pipe_rd, PIPE_BUFFER_READ_SIZE)\n rval = callback(data)\n if rval is False:\n self.event_loop.remove_watch_file(watch_handle)\n os.close(pipe_rd)\n\n watch_handle = self.event_loop.watch_file(pipe_rd, cb)\n self._watch_pipes[pipe_wr] = (watch_handle, pipe_rd)\n return pipe_wr",
"metadata": "root.MainLoop.watch_pipe",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 183
},
{
"content": " def remove_watch_pipe(self, write_fd):\n \"\"\"\n Close the read end of the pipe and remove the watch created by\n :meth:`watch_pipe`. You are responsible for closing the write end of\n the pipe.\n\n Returns ``True`` if the watch pipe exists, ``False`` otherwise\n \"\"\"\n try:\n watch_handle, pipe_rd = self._watch_pipes.pop(write_fd)\n except KeyError:\n return False\n\n if not self.event_loop.remove_watch_file(watch_handle):\n return False\n os.close(pipe_rd)\n return True",
"metadata": "root.MainLoop.remove_watch_pipe",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 226
},
{
"content": " def watch_file(self, fd, callback):\n \"\"\"\n Call *callback* when *fd* has some data to read. No parameters are\n passed to callback.\n\n Returns a handle that may be passed to :meth:`remove_watch_file`.\n \"\"\"\n return self.event_loop.watch_file(fd, callback)",
"metadata": "root.MainLoop.watch_file",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 244
},
{
"content": " def remove_watch_file(self, handle):\n \"\"\"\n Remove a watch file. Returns ``True`` if the watch file\n exists, ``False`` otherwise.\n \"\"\"\n return self.event_loop.remove_watch_file(handle)",
"metadata": "root.MainLoop.remove_watch_file",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 253
},
{
"content": " def run(self):\n \"\"\"\n Start the main loop handling input events and updating the screen. The\n loop will continue until an :exc:`ExitMainLoop` exception is raised.\n\n This method will use :attr:`screen`'s run_wrapper() method if\n :attr:`screen`'s start() method has not already been called.\n \"\"\"\n try:\n if self.screen.started:\n self._run()\n else:\n self.screen.run_wrapper(self._run)\n except ExitMainLoop:\n pass",
"metadata": "root.MainLoop.run",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 261
},
{
"content": " def _test_run(self):\n \"\"\"\n >>> w = _refl(\"widget\") # _refl prints out function calls\n >>> w.render_rval = \"fake canvas\" # *_rval is used for return values\n >>> scr = _refl(\"screen\")\n >>> scr.get_input_descriptors_rval = [42]\n >>> scr.get_cols_rows_rval = (20, 10)\n >>> scr.started = True\n >>> scr._urwid_signals = {}\n >>> evl = _refl(\"event_loop\")\n >>> evl.enter_idle_rval = 1\n >>> evl.watch_file_rval = 2\n >>> ml = MainLoop(w, [], scr, event_loop=evl)\n >>> ml.run() # doctest:+ELLIPSIS\n screen.set_mouse_tracking()\n screen.get_cols_rows()\n widget.render((20, 10), focus=True)\n screen.draw_screen((20, 10), 'fake canvas')\n screen.get_input_descriptors()\n event_loop.watch_file(42, <bound method ...>)\n event_loop.enter_idle(<bound method ...>)\n event_loop.run()\n event_loop.remove_enter_idle(1)\n event_loop.remove_watch_file(2)\n >>> scr.started = False\n >>> ml.run() # doctest:+ELLIPSIS\n screen.run_wrapper(<bound method ...>)\n \"\"\"",
"metadata": "root.MainLoop._test_run",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 277
},
{
"content": " def _run(self):\n if self.handle_mouse:\n self.screen.set_mouse_tracking()\n\n if not hasattr(self.screen, 'get_input_descriptors'):\n return self._run_screen_event_loop()\n\n self.draw_screen()\n\n fd_handles = []\n def reset_input_descriptors(only_remove=False):\n for handle in fd_handles:\n self.event_loop.remove_watch_file(handle)\n if only_remove:\n del fd_handles[:]\n else:\n fd_handles[:] = [\n self.event_loop.watch_file(fd, self._update)\n for fd in self.screen.get_input_descriptors()]\n if not fd_handles and self._input_timeout is not None:\n self.event_loop.remove_alarm(self._input_timeout)\n\n try:\n signals.connect_signal(self.screen, INPUT_DESCRIPTORS_CHANGED,\n reset_input_descriptors)\n except NameError:\n pass\n # watch our input descriptors\n reset_input_descriptors()\n idle_handle = self.event_loop.enter_idle(self.entering_idle)\n\n # Go..\n self.event_loop.run()\n\n # tidy up\n self.event_loop.remove_enter_idle(idle_handle)\n reset_input_descriptors(True)\n signals.disconnect_signal(self.screen, INPUT_DESCRIPTORS_CHANGED,\n reset_input_descriptors)",
"metadata": "root.MainLoop._run",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 306
},
{
"content": " def _update(self, timeout=False):\n \"\"\"\n >>> w = _refl(\"widget\")\n >>> w.selectable_rval = True\n >>> w.mouse_event_rval = True\n >>> scr = _refl(\"screen\")\n >>> scr.get_cols_rows_rval = (15, 5)\n >>> scr.get_input_nonblocking_rval = 1, ['y'], [121]\n >>> evl = _refl(\"event_loop\")\n >>> ml = MainLoop(w, [], scr, event_loop=evl)\n >>> ml._input_timeout = \"old timeout\"\n >>> ml._update() # doctest:+ELLIPSIS\n event_loop.remove_alarm('old timeout')\n screen.get_input_nonblocking()\n event_loop.alarm(1, <function ...>)\n screen.get_cols_rows()\n widget.selectable()\n widget.keypress((15, 5), 'y')\n >>> scr.get_input_nonblocking_rval = None, [(\"mouse press\", 1, 5, 4)\n ... ], []\n >>> ml._update()\n screen.get_input_nonblocking()\n widget.mouse_event((15, 5), 'mouse press', 1, 5, 4, focus=True)\n >>> scr.get_input_nonblocking_rval = None, [], []\n >>> ml._update()\n screen.get_input_nonblocking()\n \"\"\"\n if self._input_timeout is not None and not timeout:\n # cancel the timeout, something else triggered the update\n self.event_loop.remove_alarm(self._input_timeout)\n self._input_timeout = None\n\n max_wait, keys, raw = self.screen.get_input_nonblocking()\n \n if max_wait is not None:\n # if get_input_nonblocking wants to be called back\n # make sure it happens with an alarm\n self._input_timeout = self.event_loop.alarm(max_wait, \n lambda: self._update(timeout=True)) \n\n keys = self.input_filter(keys, raw)\n\n if keys:\n self.process_input(keys)\n if 'window resize' in keys:\n self.screen_size = None",
"metadata": "root.MainLoop._update",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 346
},
{
"content": " def _run_screen_event_loop(self):\n \"\"\"\n This method is used when the screen does not support using\n external event loops.\n\n The alarms stored in the SelectEventLoop in :attr:`event_loop`\n are modified by this method.\n \"\"\"\n next_alarm = None\n\n while True:\n self.draw_screen()\n\n if not next_alarm and self.event_loop._alarms:\n next_alarm = heapq.heappop(self.event_loop._alarms)\n\n keys = None\n while not keys:\n if next_alarm:\n sec = max(0, next_alarm[0] - time.time())\n self.screen.set_input_timeouts(sec)\n else:\n self.screen.set_input_timeouts(None)\n keys, raw = self.screen.get_input(True)\n if not keys and next_alarm: \n sec = next_alarm[0] - time.time()\n if sec <= 0:\n break\n\n keys = self.input_filter(keys, raw)\n\n if keys:\n self.process_input(keys)\n\n while next_alarm:\n sec = next_alarm[0] - time.time()\n if sec > 0:\n break\n tm, callback = next_alarm\n callback()\n\n if self.event_loop._alarms:\n next_alarm = heapq.heappop(self.event_loop._alarms)\n else:\n next_alarm = None\n\n if 'window resize' in keys:\n self.screen_size = None",
"metadata": "root.MainLoop._run_screen_event_loop",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 393
},
{
"content": " def _test_run_screen_event_loop(self):\n \"\"\"\n >>> w = _refl(\"widget\")\n >>> scr = _refl(\"screen\")\n >>> scr.get_cols_rows_rval = (10, 5)\n >>> scr.get_input_rval = [], []\n >>> ml = MainLoop(w, screen=scr)\n >>> def stop_now(loop, data):\n ... raise ExitMainLoop()\n >>> handle = ml.set_alarm_in(0, stop_now)\n >>> try:\n ... ml._run_screen_event_loop()\n ... except ExitMainLoop:\n ... pass\n screen.get_cols_rows()\n widget.render((10, 5), focus=True)\n screen.draw_screen((10, 5), None)\n screen.set_input_timeouts(0)\n screen.get_input(True)\n \"\"\"",
"metadata": "root.MainLoop._test_run_screen_event_loop",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 442
},
{
"content": " def process_input(self, keys):\n \"\"\"\n This method will pass keyboard input and mouse events to :attr:`widget`.\n This method is called automatically from the :meth:`run` method when\n there is input, but may also be called to simulate input from the user.\n\n *keys* is a list of input returned from :attr:`screen`'s get_input()\n or get_input_nonblocking() methods.\n\n Returns ``True`` if any key was handled by a widget or the\n :meth:`unhandled_input` method.\n \"\"\"\n if not self.screen_size:\n self.screen_size = self.screen.get_cols_rows()\n\n something_handled = False\n\n for k in keys:\n if k == 'window resize':\n continue\n if is_mouse_event(k):\n event, button, col, row = k\n if self._topmost_widget.mouse_event(self.screen_size,\n event, button, col, row, focus=True ):\n k = None\n elif self._topmost_widget.selectable():\n k = self._topmost_widget.keypress(self.screen_size, k)\n if k:\n if command_map[k] == REDRAW_SCREEN:\n self.screen.clear()\n something_handled = True\n else:\n something_handled |= bool(self.unhandled_input(k))\n else:\n something_handled = True\n\n return something_handled",
"metadata": "root.MainLoop.process_input",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 463
},
{
"content": " def _test_process_input(self):\n \"\"\"\n >>> w = _refl(\"widget\")\n >>> w.selectable_rval = True\n >>> scr = _refl(\"screen\")\n >>> scr.get_cols_rows_rval = (10, 5)\n >>> ml = MainLoop(w, [], scr)\n >>> ml.process_input(['enter', ('mouse drag', 1, 14, 20)])\n screen.get_cols_rows()\n widget.selectable()\n widget.keypress((10, 5), 'enter')\n widget.mouse_event((10, 5), 'mouse drag', 1, 14, 20, focus=True)\n True\n \"\"\"",
"metadata": "root.MainLoop._test_process_input",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 501
},
{
"content": " def input_filter(self, keys, raw):\n \"\"\"\n This function is passed each all the input events and raw keystroke\n values. These values are passed to the *input_filter* function\n passed to the constructor. That function must return a list of keys to\n be passed to the widgets to handle. If no *input_filter* was\n defined this implementation will return all the input events.\n \"\"\"\n if self._input_filter:\n return self._input_filter(keys, raw)\n return keys",
"metadata": "root.MainLoop.input_filter",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 516
},
{
"content": " def unhandled_input(self, input):\n \"\"\"\n This function is called with any input that was not handled by the\n widgets, and calls the *unhandled_input* function passed to the\n constructor. If no *unhandled_input* was defined then the input\n will be ignored.\n\n *input* is the keyboard or mouse input.\n\n The *unhandled_input* function should return ``True`` if it handled\n the input.\n \"\"\"\n if self._unhandled_input:\n return self._unhandled_input(input)",
"metadata": "root.MainLoop.unhandled_input",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 528
},
{
"content": " def entering_idle(self):\n \"\"\"\n This method is called whenever the event loop is about to enter the\n idle state. :meth:`draw_screen` is called here to update the\n screen when anything has changed.\n \"\"\"\n if self.screen.started:\n self.draw_screen()",
"metadata": "root.MainLoop.entering_idle",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 543
},
{
"content": " def draw_screen(self):\n \"\"\"\n Render the widgets and paint the screen. This method is called\n automatically from :meth:`entering_idle`.\n\n If you modify the widgets displayed outside of handling input or\n responding to an alarm you will need to call this method yourself\n to repaint the screen.\n \"\"\"\n if not self.screen_size:\n self.screen_size = self.screen.get_cols_rows()\n\n canvas = self._topmost_widget.render(self.screen_size, focus=True)\n self.screen.draw_screen(self.screen_size, canvas)",
"metadata": "root.MainLoop.draw_screen",
"header": "['class', 'MainLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 552
},
{
"content": "class SelectEventLoop(object):\n \"\"\"\n Event loop based on :func:`select.select`\n \"\"\"\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.SelectEventLoop",
"header": "['module', '___EOS___']",
"index": 568
},
{
"content": " def __init__(self):\n self._alarms = []\n self._watch_files = {}\n self._idle_handle = 0\n self._idle_callbacks = {}",
"metadata": "root.SelectEventLoop.__init__",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 573
},
{
"content": " def alarm(self, seconds, callback):\n \"\"\"\n Call callback() given time from from now. No parameters are\n passed to callback.\n\n Returns a handle that may be passed to remove_alarm()\n\n seconds -- floating point time to wait before calling callback\n callback -- function to call from event loop\n \"\"\"\n tm = time.time() + seconds\n heapq.heappush(self._alarms, (tm, callback))\n return (tm, callback)",
"metadata": "root.SelectEventLoop.alarm",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 579
},
{
"content": " def remove_alarm(self, handle):\n \"\"\"\n Remove an alarm.\n\n Returns True if the alarm exists, False otherwise\n \"\"\"\n try:\n self._alarms.remove(handle)\n heapq.heapify(self._alarms)\n return True\n except ValueError:\n return False",
"metadata": "root.SelectEventLoop.remove_alarm",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 593
},
{
"content": " def watch_file(self, fd, callback):\n \"\"\"\n Call callback() when fd has some data to read. No parameters\n are passed to callback.\n\n Returns a handle that may be passed to remove_watch_file()\n\n fd -- file descriptor to watch for input\n callback -- function to call when input is available\n \"\"\"\n self._watch_files[fd] = callback\n return fd",
"metadata": "root.SelectEventLoop.watch_file",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 606
},
{
"content": " def remove_watch_file(self, handle):\n \"\"\"\n Remove an input file.\n\n Returns True if the input file exists, False otherwise\n \"\"\"\n if handle in self._watch_files:\n del self._watch_files[handle]\n return True\n return False",
"metadata": "root.SelectEventLoop.remove_watch_file",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 619
},
{
"content": " def enter_idle(self, callback):\n \"\"\"\n Add a callback for entering idle.\n\n Returns a handle that may be passed to remove_idle()\n \"\"\"\n self._idle_handle += 1\n self._idle_callbacks[self._idle_handle] = callback\n return self._idle_handle",
"metadata": "root.SelectEventLoop.enter_idle",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 630
},
{
"content": " def remove_enter_idle(self, handle):\n \"\"\"\n Remove an idle callback.\n\n Returns True if the handle was removed.\n \"\"\"\n try:\n del self._idle_callbacks[handle]\n except KeyError:\n return False\n return True",
"metadata": "root.SelectEventLoop.remove_enter_idle",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 640
},
{
"content": " def _entering_idle(self):\n \"\"\"\n Call all the registered idle callbacks.\n \"\"\"\n for callback in self._idle_callbacks.values():\n callback()",
"metadata": "root.SelectEventLoop._entering_idle",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 652
},
{
"content": " def run(self):\n \"\"\"\n Start the event loop. Exit the loop when any callback raises\n an exception. If ExitMainLoop is raised, exit cleanly.\n \"\"\"\n try:\n self._did_something = True\n while True:\n try:\n self._loop()\n except select.error, e:\n if e.args[0] != 4:\n # not just something we need to retry\n raise\n except ExitMainLoop:\n pass",
"metadata": "root.SelectEventLoop.run",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 659
},
{
"content": " def _loop(self):\n \"\"\"\n A single iteration of the event loop\n \"\"\"\n fds = self._watch_files.keys()\n if self._alarms or self._did_something:\n if self._alarms:\n tm = self._alarms[0][0]\n timeout = max(0, tm - time.time())\n if self._did_something and (not self._alarms or \n (self._alarms and timeout > 0)):\n timeout = 0\n tm = 'idle'\n ready, w, err = select.select(fds, [], fds, timeout)\n else:\n tm = None\n ready, w, err = select.select(fds, [], fds)\n\n if not ready:\n if tm == 'idle':\n self._entering_idle()\n self._did_something = False\n elif tm is not None:\n # must have been a timeout\n tm, alarm_callback = self._alarms.pop(0)\n alarm_callback()\n self._did_something = True\n\n for fd in ready:\n self._watch_files[fd]()\n self._did_something = True",
"metadata": "root.SelectEventLoop._loop",
"header": "['class', 'SelectEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 676
},
{
"content": "class GLibEventLoop(object):\n \"\"\"\n Event loop based on GLib.MainLoop\n \"\"\"\n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.GLibEventLoop",
"header": "['module', '___EOS___']",
"index": 709
},
{
"content": " def __init__(self):\n from gi.repository import GLib\n self.GLib = GLib\n self._alarms = []\n self._watch_files = {}\n self._idle_handle = 0\n self._glib_idle_enabled = False # have we called glib.idle_add?\n self._idle_callbacks = {}\n self._loop = GLib.MainLoop()\n self._exc_info = None\n self._enable_glib_idle()",
"metadata": "root.GLibEventLoop.__init__",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 714
},
{
"content": " def alarm(self, seconds, callback):\n \"\"\"\n Call callback() given time from from now. No parameters are\n passed to callback.\n\n Returns a handle that may be passed to remove_alarm()\n\n seconds -- floating point time to wait before calling callback\n callback -- function to call from event loop\n \"\"\"\n @self.handle_exit\n def ret_false():\n callback()\n self._enable_glib_idle()\n return False\n fd = self.GLib.timeout_add(int(seconds*1000), ret_false)\n self._alarms.append(fd)\n return (fd, callback)",
"metadata": "root.GLibEventLoop.alarm",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 726
},
{
"content": " def remove_alarm(self, handle):\n \"\"\"\n Remove an alarm.\n\n Returns True if the alarm exists, False otherwise\n \"\"\"\n try:\n self._alarms.remove(handle[0])\n self.GLib.source_remove(handle[0])\n return True\n except ValueError:\n return False",
"metadata": "root.GLibEventLoop.remove_alarm",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 745
},
{
"content": " def watch_file(self, fd, callback):\n \"\"\"\n Call callback() when fd has some data to read. No parameters\n are passed to callback.\n\n Returns a handle that may be passed to remove_watch_file()\n\n fd -- file descriptor to watch for input\n callback -- function to call when input is available\n \"\"\"\n @self.handle_exit\n def io_callback(source, cb_condition):\n callback()\n self._enable_glib_idle()\n return True\n self._watch_files[fd] = \\\n self.GLib.io_add_watch(fd,self.GLib.IO_IN,io_callback)\n return fd",
"metadata": "root.GLibEventLoop.watch_file",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 758
},
{
"content": " def remove_watch_file(self, handle):\n \"\"\"\n Remove an input file.\n\n Returns True if the input file exists, False otherwise\n \"\"\"\n if handle in self._watch_files:\n self.GLib.source_remove(self._watch_files[handle])\n del self._watch_files[handle]\n return True\n return False",
"metadata": "root.GLibEventLoop.remove_watch_file",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 777
},
{
"content": " def enter_idle(self, callback):\n \"\"\"\n Add a callback for entering idle.\n\n Returns a handle that may be passed to remove_enter_idle()\n \"\"\"\n self._idle_handle += 1\n self._idle_callbacks[self._idle_handle] = callback\n return self._idle_handle",
"metadata": "root.GLibEventLoop.enter_idle",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 789
},
{
"content": " def _enable_glib_idle(self):\n if self._glib_idle_enabled:\n return\n self.GLib.idle_add(self._glib_idle_callback)\n self._glib_idle_enabled = True",
"metadata": "root.GLibEventLoop._enable_glib_idle",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 799
},
{
"content": " def _glib_idle_callback(self):\n for callback in self._idle_callbacks.values():\n callback()\n self._glib_idle_enabled = False\n return False # ask glib not to call again (or we would be called",
"metadata": "root.GLibEventLoop._glib_idle_callback",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 805
},
{
"content": " def remove_enter_idle(self, handle):\n \"\"\"\n Remove an idle callback.\n\n Returns True if the handle was removed.\n \"\"\"\n try:\n del self._idle_callbacks[handle]\n except KeyError:\n return False\n return True",
"metadata": "root.GLibEventLoop.remove_enter_idle",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 811
},
{
"content": " def run(self):\n \"\"\"\n Start the event loop. Exit the loop when any callback raises\n an exception. If ExitMainLoop is raised, exit cleanly.\n \"\"\"\n try:\n self._loop.run()\n finally:\n if self._loop.is_running():\n self._loop.quit()\n if self._exc_info:\n # An exception caused us to exit, raise it now\n exc_info = self._exc_info\n self._exc_info = None\n raise exc_info[0], exc_info[1], exc_info[2]",
"metadata": "root.GLibEventLoop.run",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 823
},
{
"content": " def handle_exit(self,f):\n \"\"\"\n Decorator that cleanly exits the :class:`GLibEventLoop` if\n :exc:`ExitMainLoop` is thrown inside of the wrapped function. Store the\n exception info if some other exception occurs, it will be reraised after\n the loop quits.\n\n *f* -- function to be wrapped\n \"\"\"\n def wrapper(*args,**kargs):\n try:\n return f(*args,**kargs)\n except ExitMainLoop:\n self._loop.quit()\n except:\n import sys\n self._exc_info = sys.exc_info()\n if self._loop.is_running():\n self._loop.quit()\n return False\n return wrapper",
"metadata": "root.GLibEventLoop.handle_exit",
"header": "['class', 'GLibEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 839
},
{
"content": "class TornadoEventLoop(object):\n \"\"\" This is an Urwid-specific event loop to plug into its MainLoop.\n It acts as an adaptor for Tornado's IOLoop which does all\n heavy lifting except idle-callbacks.\n\n Notice, since Tornado has no concept of idle callbacks we\n monkey patch ioloop._impl.poll() function to be able to detect\n potential idle periods.\n \"\"\"\n _ioloop_registry = WeakKeyDictionary() # {<ioloop> : {<handle> : <idle_func>}}\n _max_idle_handle = 0\n\n class PollProxy(object):\n \"\"\" A simple proxy for a Python's poll object that wraps the .poll() method\n in order to detect idle periods and call Urwid callbacks\n \"\"\"\n def __init__(self, poll_obj, idle_map):\n self.__poll_obj = poll_obj\n self.__idle_map = idle_map\n self._idle_done = False\n self._prev_timeout = 0\n\n def __getattr__(self, name):\n return getattr(self.__poll_obj, name)\n\n def poll(self, timeout):\n if timeout > self._prev_timeout:\n # if timeout increased we assume a timer event was handled\n self._idle_done = False\n self._prev_timeout = timeout\n start = time.time()\n\n # any IO pending wins\n events = self.__poll_obj.poll(0)\n if events:\n self._idle_done = False\n return events\n\n # our chance to enter idle\n if not self._idle_done:\n for callback in self.__idle_map.values():\n callback()\n self._idle_done = True\n\n # then complete the actual request (adjusting timeout)\n timeout = max(0, min(timeout, timeout + start - time.time()))\n events = self.__poll_obj.poll(timeout)\n if events:\n self._idle_done = False\n return events\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.TornadoEventLoop",
"header": "['module', '___EOS___']",
"index": 862
},
{
"content": " @classmethod\n def _patch_poll_impl(cls, ioloop):\n \"\"\" Wraps original poll object in the IOLoop's poll object\n \"\"\"\n if ioloop in cls._ioloop_registry:\n return # we already patched this instance\n\n cls._ioloop_registry[ioloop] = idle_map = {}\n ioloop._impl = cls.PollProxy(ioloop._impl, idle_map)",
"metadata": "root.TornadoEventLoop._patch_poll_impl",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 913
},
{
"content": " def __init__(self, ioloop=None):\n if not ioloop:\n from tornado.ioloop import IOLoop\n ioloop = IOLoop.instance()\n self._ioloop = ioloop\n self._patch_poll_impl(ioloop)\n self._pending_alarms = {}\n self._watch_handles = {} # {<watch_handle> : <file_descriptor>}\n self._max_watch_handle = 0\n self._exception = None",
"metadata": "root.TornadoEventLoop.__init__",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 923
},
{
"content": " def alarm(self, secs, callback):\n ioloop = self._ioloop\n def wrapped():\n try:\n del self._pending_alarms[handle]\n except KeyError:\n pass\n self.handle_exit(callback)()\n handle = ioloop.add_timeout(ioloop.time() + secs, wrapped)\n self._pending_alarms[handle] = 1\n return handle",
"metadata": "root.TornadoEventLoop.alarm",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 934
},
{
"content": " def remove_alarm(self, handle):\n self._ioloop.remove_timeout(handle)\n try:\n del self._pending_alarms[handle]\n except KeyError:\n return False\n else:\n return True",
"metadata": "root.TornadoEventLoop.remove_alarm",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 946
},
{
"content": " def watch_file(self, fd, callback):\n from tornado.ioloop import IOLoop\n handler = lambda fd,events: self.handle_exit(callback)()\n self._ioloop.add_handler(fd, handler, IOLoop.READ)\n self._max_watch_handle += 1\n handle = self._max_watch_handle\n self._watch_handles[handle] = fd\n return handle",
"metadata": "root.TornadoEventLoop.watch_file",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 955
},
{
"content": " def remove_watch_file(self, handle):\n fd = self._watch_handles.pop(handle, None)\n if fd is None:\n return False\n else:\n self._ioloop.remove_handler(fd)\n return True",
"metadata": "root.TornadoEventLoop.remove_watch_file",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 964
},
{
"content": " def enter_idle(self, callback):\n self._max_idle_handle += 1\n handle = self._max_idle_handle\n idle_map = self._ioloop_registry[self._ioloop]\n idle_map[handle] = callback\n return handle",
"metadata": "root.TornadoEventLoop.enter_idle",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 972
},
{
"content": " def remove_enter_idle(self, handle):\n idle_map = self._ioloop_registry[self._ioloop]\n cb = idle_map.pop(handle, None)\n return cb is not None",
"metadata": "root.TornadoEventLoop.remove_enter_idle",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 979
},
{
"content": " def handle_exit(self, func):\n @wraps(func)\n def wrapper(*args, **kw):\n try:\n return func(*args, **kw)\n except ExitMainLoop:\n self._ioloop.stop()\n except Exception as exc:\n self._exception = exc\n self._ioloop.stop()\n return False\n return wrapper",
"metadata": "root.TornadoEventLoop.handle_exit",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 984
},
{
"content": " def run(self):\n self._ioloop.start()\n if self._exception:\n exc, self._exception = self._exception, None\n raise exc",
"metadata": "root.TornadoEventLoop.run",
"header": "['class', 'TornadoEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 997
},
{
"content": "class TwistedInputDescriptor(FileDescriptor):\n\n",
"metadata": "root.TwistedInputDescriptor",
"header": "['module', '___EOS___']",
"index": 1009
},
{
"content": " def __init__(self, reactor, fd, cb):\n self._fileno = fd\n self.cb = cb\n FileDescriptor.__init__(self, reactor)",
"metadata": "root.TwistedInputDescriptor.__init__",
"header": "['class', 'TwistedInputDescriptor', '(', 'FileDescriptor', ')', ':', '___EOS___']",
"index": 1010
},
{
"content": " def fileno(self):\n return self._fileno",
"metadata": "root.TwistedInputDescriptor.fileno",
"header": "['class', 'TwistedInputDescriptor', '(', 'FileDescriptor', ')', ':', '___EOS___']",
"index": 1015
},
{
"content": " def doRead(self):\n return self.cb()",
"metadata": "root.TwistedInputDescriptor.doRead",
"header": "['class', 'TwistedInputDescriptor', '(', 'FileDescriptor', ')', ':', '___EOS___']",
"index": 1018
},
{
"content": "class TwistedEventLoop(object):\n \"\"\"\n Event loop based on Twisted_\n \"\"\"\n _idle_emulation_delay = 1.0/256 # a short time (in seconds)\n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.TwistedEventLoop",
"header": "['module', '___EOS___']",
"index": 1022
},
{
"content": " def __init__(self, reactor=None, manage_reactor=True):\n \"\"\"\n :param reactor: reactor to use\n :type reactor: :class:`twisted.internet.reactor`.\n :param: manage_reactor: `True` if you want this event loop to run\n and stop the reactor.\n :type manage_reactor: boolean\n\n .. WARNING::\n Twisted's reactor doesn't like to be stopped and run again. If you\n need to stop and run your :class:`MainLoop`, consider setting\n ``manage_reactor=False`` and take care of running/stopping the reactor\n at the beginning/ending of your program yourself.\n\n .. _Twisted: http://twistedmatrix.com/trac/\n \"\"\"\n if reactor is None:\n import twisted.internet.reactor\n reactor = twisted.internet.reactor\n self.reactor = reactor\n self._alarms = []\n self._watch_files = {}\n self._idle_handle = 0\n self._twisted_idle_enabled = False\n self._idle_callbacks = {}\n self._exc_info = None\n self.manage_reactor = manage_reactor\n self._enable_twisted_idle()",
"metadata": "root.TwistedEventLoop.__init__",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1028
},
{
"content": " def alarm(self, seconds, callback):\n \"\"\"\n Call callback() given time from from now. No parameters are\n passed to callback.\n\n Returns a handle that may be passed to remove_alarm()\n\n seconds -- floating point time to wait before calling callback\n callback -- function to call from event loop\n \"\"\"\n handle = self.reactor.callLater(seconds, self.handle_exit(callback))\n return handle",
"metadata": "root.TwistedEventLoop.alarm",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1057
},
{
"content": " def remove_alarm(self, handle):\n \"\"\"\n Remove an alarm.\n\n Returns True if the alarm exists, False otherwise\n \"\"\"\n from twisted.internet.error import AlreadyCancelled, AlreadyCalled\n try:\n handle.cancel()\n return True\n except AlreadyCancelled:\n return False\n except AlreadyCalled:\n return False",
"metadata": "root.TwistedEventLoop.remove_alarm",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1070
},
{
"content": " def watch_file(self, fd, callback):\n \"\"\"\n Call callback() when fd has some data to read. No parameters\n are passed to callback.\n\n Returns a handle that may be passed to remove_watch_file()\n\n fd -- file descriptor to watch for input\n callback -- function to call when input is available\n \"\"\"\n ind = TwistedInputDescriptor(self.reactor, fd,\n self.handle_exit(callback))\n self._watch_files[fd] = ind\n self.reactor.addReader(ind)\n return fd",
"metadata": "root.TwistedEventLoop.watch_file",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1085
},
{
"content": " def remove_watch_file(self, handle):\n \"\"\"\n Remove an input file.\n\n Returns True if the input file exists, False otherwise\n \"\"\"\n if handle in self._watch_files:\n self.reactor.removeReader(self._watch_files[handle])\n del self._watch_files[handle]\n return True\n return False",
"metadata": "root.TwistedEventLoop.remove_watch_file",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1101
},
{
"content": " def enter_idle(self, callback):\n \"\"\"\n Add a callback for entering idle.\n\n Returns a handle that may be passed to remove_enter_idle()\n \"\"\"\n self._idle_handle += 1\n self._idle_callbacks[self._idle_handle] = callback\n return self._idle_handle",
"metadata": "root.TwistedEventLoop.enter_idle",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1113
},
{
"content": " def _enable_twisted_idle(self):\n \"\"\"\n Twisted's reactors don't have an idle or enter-idle callback\n so the best we can do for now is to set a timer event in a very\n short time to approximate an enter-idle callback.\n\n .. WARNING::\n This will perform worse than the other event loops until we can find a\n fix or workaround\n \"\"\"\n if self._twisted_idle_enabled:\n return\n self.reactor.callLater(self._idle_emulation_delay,\n self.handle_exit(self._twisted_idle_callback, enable_idle=False))\n self._twisted_idle_enabled = True",
"metadata": "root.TwistedEventLoop._enable_twisted_idle",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1123
},
{
"content": " def _twisted_idle_callback(self):\n for callback in self._idle_callbacks.values():\n callback()\n self._twisted_idle_enabled = False",
"metadata": "root.TwistedEventLoop._twisted_idle_callback",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1139
},
{
"content": " def remove_enter_idle(self, handle):\n \"\"\"\n Remove an idle callback.\n\n Returns True if the handle was removed.\n \"\"\"\n try:\n del self._idle_callbacks[handle]\n except KeyError:\n return False\n return True",
"metadata": "root.TwistedEventLoop.remove_enter_idle",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1144
},
{
"content": " def run(self):\n \"\"\"\n Start the event loop. Exit the loop when any callback raises\n an exception. If ExitMainLoop is raised, exit cleanly.\n \"\"\"\n if not self.manage_reactor:\n return\n self.reactor.run()\n if self._exc_info:\n # An exception caused us to exit, raise it now\n exc_info = self._exc_info\n self._exc_info = None\n raise exc_info[0], exc_info[1], exc_info[2]",
"metadata": "root.TwistedEventLoop.run",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1156
},
{
"content": " def handle_exit(self, f, enable_idle=True):\n \"\"\"\n Decorator that cleanly exits the :class:`TwistedEventLoop` if\n :class:`ExitMainLoop` is thrown inside of the wrapped function. Store the\n exception info if some other exception occurs, it will be reraised after\n the loop quits.\n\n *f* -- function to be wrapped\n \"\"\"\n def wrapper(*args,**kargs):\n rval = None\n try:\n rval = f(*args,**kargs)\n except ExitMainLoop:\n if self.manage_reactor:\n self.reactor.stop()\n except:\n import sys\n print sys.exc_info()\n self._exc_info = sys.exc_info()\n if self.manage_reactor:\n self.reactor.crash()\n if enable_idle:\n self._enable_twisted_idle()\n return rval\n return wrapper",
"metadata": "root.TwistedEventLoop.handle_exit",
"header": "['class', 'TwistedEventLoop', '(', 'object', ')', ':', '___EOS___']",
"index": 1170
},
{
"content": "def _refl(name, rval=None, exit=False):\n \"\"\"\n This function is used to test the main loop classes.\n\n >>> scr = _refl(\"screen\")\n >>> scr.function(\"argument\")\n screen.function('argument')\n >>> scr.callme(when=\"now\")\n screen.callme(when='now')\n >>> scr.want_something_rval = 42\n >>> x = scr.want_something()\n screen.want_something()\n >>> x\n 42\n\n \"\"\"\n class Reflect(object):\n def __init__(self, name, rval=None):\n self._name = name\n self._rval = rval\n def __call__(self, *argl, **argd):\n args = \", \".join([repr(a) for a in argl])\n if args and argd:\n args = args + \", \"\n args = args + \", \".join([k+\"=\"+repr(v) for k,v in argd.items()])\n print self._name+\"(\"+args+\")\"\n if exit:\n raise ExitMainLoop()\n return self._rval\n def __getattr__(self, attr):\n if attr.endswith(\"_rval\"):\n raise AttributeError()\n #print self._name+\".\"+attr\n if hasattr(self, attr+\"_rval\"):\n return Reflect(self._name+\".\"+attr, getattr(self, attr+\"_rval\"))\n return Reflect(self._name+\".\"+attr)\n return Reflect(name)",
"metadata": "root._refl",
"header": "['module', '___EOS___']",
"index": 1199
},
{
"content": "def _test():\n import doctest\n doctest.testmod()",
"metadata": "root._test",
"header": "['module', '___EOS___']",
"index": 1237
}
]
| [
{
"span": "from urwid.compat import PYTHON3",
"start_line": 33,
"start_column": 0,
"end_line": 33,
"end_column": 32
}
]
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|
Unused import | openeventdata/petrarch2/petrarch2/PETRtree.py | [
{
"content": "\n\nfrom __future__ import print_function\nfrom __future__ import unicode_literals\n\n\nimport PETRglobals\nimport PETRreader\nimport time\nimport utilities\nimport types\n\n# -- from inspect import getouterframes, currentframe # -- # used to track the levels of recursion\n\n\n\n# PETRtree.py\n# Author: Clayton Norris\n# Caerus Associates/ University of Chicago\n#\n#\n# Purpose:\n# Called from petrarch.py, this contains the main logic\n# of the Petrarch software. Sentences are stored into\n# Sentence class objects, which contain a tree of Phrase\n# class objects. The phrases then do analyses of their role\n# in the sentence and the event information of the overall sentence\n# is calculated and returned within the get_events() method\n#\n#\n# Revision history:\n# July 2015 - Created\n# August 2015 - First release\n# April 2016 - Bugs causing crashes in very low frequency cases corrected \n\n# pas 16.04.22: print() statements commented-out with '# --' were used in the debugging and can probably be removed\n\n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class Phrase:\n \"\"\"\n This is a general class for all Phrase instances, which make up the nodes in the syntactic tree.\n The three subtypes are below.\n \n \"\"\"\n \n \n \n\n \n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.Phrase",
"header": "['module', '___EOS___']",
"index": 37
},
{
"content": " def __init__(self, label, date,sentence):\n \"\"\"\n Initialization for Phrase classes. \n \n \n Parameters\n -----------\n \n label: list\n Label for the phrase type, date\n \n Returns\n -------\n An instantiated Phrase object\n\n \"\"\"\n self.label = label if not label == \"MD\" else \"VB\"\n self.children = []\n self.phrasetype = label[0]\n self.annotation = \"\"\n self.text = \"\"\n self.parent = None\n self.meaning = \"\"\n self.verbclass = \"\"\n self.date = date\n self.index = -1\n self.head = None\n self.head_phrase = None\n self.color = False\n self.sentence = sentence",
"metadata": "root.Phrase.__init__",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 44
},
{
"content": " def get_meaning(self):\n \"\"\"\n Method for returning the meaning of the subtree rooted by this phrase,\n is overwritten by all subclasses, so this works primarily for\n S and S-Bar phrases.\n \n \n \n Parameters\n -----------\n self: Phrase object that called the method\n \n \n Returns\n -------\n \n events: list\n Combined meanings of the phrases children\n \"\"\"\n \n if self.label in \"SBAR\":\n lower = map(lambda b: b.get_meaning(), filter(lambda a: a.label in \"SBARVP\",self.children))\n events = []\n for item in lower:\n events += item\n if events:\n self.meaning = events\n return events\n \n return self.meaning",
"metadata": "root.Phrase.get_meaning",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 76
},
{
"content": " def get_text(self):\n if self.color:\n return \"\"\n text = self.text\n for child in self.children:\n if isinstance(child,NounPhrase):\n text += \" \" + child.get_text()[0]\n else:\n text += \" \" + child.get_text()\n \n return text",
"metadata": "root.Phrase.get_text",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 107
},
{
"content": " def resolve_codes(self,codes):\n \"\"\"\n Method that divides a list of mixed codes into actor and agent codes\n \n Parameters\n -----------\n codes: list\n Mixed list of codes\n \n Returns\n -------\n actorcodes: list\n List of actor codes\n \n agentcodes: list\n List of actor codes\n \n \"\"\"\n# -- print('Prc-entry',len(getouterframes(currentframe(1))),codes) # --\n if not codes:\n return [],[]\n \n actorcodes = []\n agentcodes = []\n for code in codes:\n if not code:\n continue\n \"\"\"if isinstance(code,tuple):\n actorcodes.append(code)\n else:\n agentcodes.append(code)\"\"\"\n if code.startswith(\"~\"):\n agentcodes.append(code)\n else:\n actorcodes.append(code)\n return actorcodes,agentcodes",
"metadata": "root.Phrase.resolve_codes",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 119
},
{
"content": " def mix_codes(self,agents,actors):\n \"\"\"\n Combine the actor codes and agent codes addressing duplicates\n and removing the general \"~PPL\" if there's a better option.\n \n Parameters\n -----------\n agents, actors : Lists of their respective codes\n \n \n Returns\n -------\n codes: list\n [Agent codes] x [Actor codes]\n \n \"\"\"\n \n \n# -- print('mc-entry',actors,agents)\n codes = set()\n mix = lambda a, b : a + b if not b in a else a\n actors = actors if actors else ['~']\n for ag in agents:\n if ag == '~PPL' and len(agents) > 1:\n continue\n# actors = map( lambda a : mix( a[0], ag[1:]), actors)\n actors = map( lambda a : mix( a, ag[1:]), actors)\n \n# -- print('mc-1',actors)\n return filter(lambda a : a not in ['','~','~~',None],actors)\n \n \n \n # 16.04.25 hmmm, this is either a construct of utterly phenomenal subtlety or else we never hit this code...\n codes = set()\n print('WTF-1')\n for act in (actors if actors else ['~']):\n for ag in (agents if agents else ['~']) :\n if ag == \"~PPL\" and len(agents) > 1:\n continue\n code = act\n if not ag[1:] in act:\n code += ag[1:]\n if not code in ['~','~~',\"\"]:\n codes.add(code)\n return list(codes)",
"metadata": "root.Phrase.mix_codes",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 158
},
{
"content": " def return_head(self):\n return self.head,self.head_phrase",
"metadata": "root.Phrase.return_head",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 207
},
{
"content": " def get_head(self):\n \"\"\"\n Method for finding the head of a phrase. The head of a phrase is the rightmost\n word-level constituent such that the path from root to head consists only of similarly-labeled\n phrases.\n \n Parameters\n -----------\n self: Phrase object that called the method\n \n Returns\n -------\n possibilities[-1]: tuple (string,NounPhrase)\n (The text of the head of the phrase, the NounPhrase object whose rightmost child is the\n head).\n \n \n \"\"\"\n self.get_head = self.return_head\n try:\n if self.label == 'S':\n self.head, self.head_phrase = map(lambda b: b.get_head(),filter(lambda a : a.label == 'VP', self.children))[0]\n return (self.head,self.head_phrase)\n elif self.label == 'ADVP':\n return self.children[0].text,self\n if (not self.label[1] == 'P'):\n return (self.text,self.parent)\n \n head_children = filter(lambda child : child.label.startswith(self.label[0]) and not child.label[1] == 'P', self.children)\n if head_children:\n possibilities = filter(None, map(lambda a: a.get_head(),head_children))\n else:\n other_children= filter(lambda child : child.label.startswith(self.label[0]), self.children)\n possibilities = filter(None, map(lambda a: a.get_head(),other_children))\n \n self.head_phrase = possibilities[-1][1]\n self.head = possibilities[-1][0] # return the last, English usually compounds words to the front\n return possibilities[-1]\n \n except:\n return (None,None)",
"metadata": "root.Phrase.get_head",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 212
},
{
"content": " def print_to_stdout(self,indent):\n print(indent, self.label,self.text,self.get_meaning())\n for child in self.children:\n child.print_to_stdout(indent + \"\\t\")",
"metadata": "root.Phrase.print_to_stdout",
"header": "['class', 'Phrase', ':', '___EOS___']",
"index": 255
},
{
"content": "class NounPhrase(Phrase):\n \"\"\"\n Class specific to noun phrases. \n \n Methods: get_meaning() - specific version of the super's method\n check_date() - find the date-specific version of an actor\n \n \"\"\"\n \n \n\n\n\n\n\n\n\n",
"metadata": "root.NounPhrase",
"header": "['module', '___EOS___']",
"index": 262
},
{
"content": " def __init__(self, label, date, sentence):\n Phrase.__init__(self, label, date, sentence )",
"metadata": "root.NounPhrase.__init__",
"header": "['class', 'NounPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 270
},
{
"content": " def return_meaning(self):\n return self.meaning",
"metadata": "root.NounPhrase.return_meaning",
"header": "['class', 'NounPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 274
},
{
"content": " def get_text(self):\n \"\"\"\n Noun-specific get text method\n \"\"\"\n PPcodes = []\n text = \"\"\n for child in self.children:\n if isinstance(child,PrepPhrase):\n m = self.resolve_codes(child.get_meaning())\n if m[0]:\n PPcodes += child.get_meaning()\n else:\n text += \" \" + child.get_text()\n if isinstance(child,NounPhrase):\n value = child.get_text()\n text += value[0]\n PPcodes += value[1]\n if child.label[:2] in [\"JJ\",\"NN\",\"DT\"]:\n text += \" \"+child.text\n return text,PPcodes",
"metadata": "root.NounPhrase.get_text",
"header": "['class', 'NounPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 278
},
{
"content": " def check_date(self, match):\n \"\"\"\n Method for resolving date restrictions on actor codes. \n \n Parameters\n -----------\n match: list\n Dates and codes from the dictionary\n \n Returns\n -------\n code: string\n The code corresponding to how the actor should be coded given the date\n \"\"\"\n \n code = None\n try:\n \n for j in match:\n dates = j[1]\n date = []\n code = \"\"\n for d in dates:\n if d[0] in '<>':\n date.append(d[0]+str(PETRreader.dstr_to_ordate(d[1:])))\n else:\n date.append(str(PETRreader.dstr_to_ordate(d)))\n curdate= self.date\n if not date:\n code = j[0]\n elif len(date) == 1:\n if date[0][0] == '<':\n if curdate < int(date[0][1:]):\n code = j[0]\n else:\n if curdate >= int(date[0][1:]):\n code = j[0]\n else:\n if curdate < int(date[1]):\n if curdate >= int(date[0]):\n code = j[0]\n \n if code:\n return code\n except Exception as e:\n #print(e)\n return code \n\n return code",
"metadata": "root.NounPhrase.check_date",
"header": "['class', 'NounPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 299
},
{
"content": " def get_meaning(self):\n\n def recurse(path, words, length,so_far= \"\"):\n \n# -- print('NPgm-rec-lev:',len(getouterframes(currentframe(1)))) # --\n \n if words and words[0] in path:\n match = recurse(path[words[0]],words[1:],length + 1 , so_far + \" \" + words[0])\n if match:\n return match\n if '#' in path:\n if isinstance(path[\"#\"],list):\n code = self.check_date(path['#'])\n if not code is None:\n \"\"\"print('NPgm-rec-1:',code) # --\n print('NPgm-rec-1.1:',path['#'][-1])\"\"\"\n return [code] , so_far, length, [path['#'][-1]] # 16.04.25 this branch always resolves to an actor; path['#'][-1] is the root string\n else:\n# -- print('NPgm-rec-2:',path['#'])\n return [path['#']], so_far, length # 16.04.25 this branch always resolves to an agent\n return False\n\n text_children = []\n PPcodes = []\n VPcodes = []\n NPcodes = []\n codes = []\n roots = []\n # -- print('NPgm-0:',self.get_text()) # --\n \n matched_txt = []\n \n for child in self.children:\n if isinstance(child,NounPhrase):\n value = child.get_text()\n text_children += value[0].split()\n NPcodes += value[1]\n elif child.label[:2] in [\"JJ\",\"DT\",\"NN\"]:\n text_children += child.get_text().split()\n \n elif child.label == \"PP\":\n m = self.resolve_codes(child.get_meaning())\n# -- print('gm-1:',m) # --\n if m[0]:\n PPcodes += child.get_meaning()\n else:\n text_children += child.get_text().split()\n \n elif child.label == \"VP\":\n m = child.get_meaning()\n if m and isinstance(m[0][1],basestring):\n m = self.resolve_codes(m[0][1])\n if m[0]:\n VPcodes += child.get_theme()\n else:\n pass\n # We could add the subtree here, but there shouldn't be any codes with VP components\n elif child.label == \"PRP\":\n # Find antecedent\n not_found = True\n level = self.parent\n reflexive = child.text.endswith(\"SELF\") or child.text.endswith(\"SELVES\")\n local = True\n while not_found and level.parent:\n if level.label.startswith(\"NP\") and reflexive: #Intensive, ignore\n break\n if local and level.label in [\"S\",\"SBAR\"]:\n local = False\n level=level.parent\n continue\n \n if (not local) or (reflexive and local):\n for child in level.parent.children:\n if isinstance(child,NounPhrase): \n if not child.get_meaning() == \"~\" : # Do we just want to pick the first?\n not_found = False\n codes += child.get_meaning()\n break\n\n level = level.parent\n \n \n # check whether there are codes in the noun Phrase\n index = 0\n while index < len(text_children):\n match = recurse(PETRglobals.ActorDict,text_children[index:],0) # checking for actors\n if match:\n# -- print('NPgm-m-1:',match)\n codes += match[0]\n roots += match[3]\n index += match[2]\n matched_txt += [match[1]]\n# -- print('NPgm-1:',matched_txt)\n continue\n\n match = recurse(PETRglobals.AgentDict,text_children[index:],0) # checking for agents\n if match:\n# -- print('NPgm-2.0:',roots)\n codes += match[0]\n roots += [['~']]\n index += match[2]\n matched_txt += [match[1]]\n \"\"\"print('NPgm-2:',matched_txt) # --\n print('NPgm-2.1:',roots)\"\"\"\n continue\n index += 1\n \n \"\"\"print('NPgm-m-lev:',len(getouterframes(currentframe(1)))) # -- \n print('NPgm-m-codes:',codes)\n print('NPgm-m-roots:',roots)\"\"\"\n # combine the actor/agent codes\n actorcodes,agentcodes = self.resolve_codes(codes)\n PPactor, PPagent = self.resolve_codes(PPcodes)\n NPactor, NPagent = self.resolve_codes(NPcodes)\n VPactor, VPagent = self.resolve_codes(VPcodes)\n if not actorcodes:\n actorcodes += NPactor # don't really need += here, right? pas 16.04.26\n if not actorcodes:\n actorcodes += PPactor\n if not actorcodes:\n actorcodes += VPactor # Do we want to pull meanings from verb phrases? Could be risky\n \n if not agentcodes:\n agentcodes += NPagent\n if not agentcodes:\n agentcodes += PPagent\n if not agentcodes:\n agentcodes += VPagent\n\n \"\"\"if len(actorcodes) > 0:\n print('NPgm-m-actorcodes:',actorcodes)\n print('NPgm-m-roots :',roots)\"\"\"\n \n self.meaning = self.mix_codes(agentcodes,actorcodes)\n self.get_meaning = self.return_meaning\n \"\"\"print('NPgm-3:',self.meaning)\n print('NPgm-4:',matched_txt)\"\"\"\n if matched_txt:\n self.sentence.metadata['nouns'] += [(matched_txt,self.meaning, roots[:len(matched_txt)])] \n# self.sentence.print_nouns('NPgm-5:') # --\n return self.meaning",
"metadata": "root.NounPhrase.get_meaning",
"header": "['class', 'NounPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 350
},
{
"content": " def convert_existential(self):\n # Reshuffle the tree to get existential \"There are\" phrases into a more basic form\n parent = self.parent\n sister = parent.children[1]\n neice = sister.children[1]\n subject = neice.children[0]\n predicate = neice.children[1]\n \n \n parent.children[0] = subject\n subject.parent = parent\n \n sister.children[1] = predicate\n predicate.parent = sister\n \n self.parent = None\n\n\n #parent.print_to_stdout(\"\")\n return subject",
"metadata": "root.NounPhrase.convert_existential",
"header": "['class', 'NounPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 494
},
{
"content": "class PrepPhrase(Phrase):\n\n\n",
"metadata": "root.PrepPhrase",
"header": "['module', '___EOS___']",
"index": 516
},
{
"content": " def __init__(self, label, date, sentence):\n Phrase.__init__(self, label, date, sentence)\n self.meaning = \"\"\n self.prep = \"\"\n self.head = \"\"",
"metadata": "root.PrepPhrase.__init__",
"header": "['class', 'PrepPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 518
},
{
"content": " def get_meaning(self):\n \"\"\"\n Return the meaning of the non-preposition constituent, and store the\n preposition.\n \n Note: pas 16.04.22\n Add this len() > 0 check to get around a very rare (about 0.001% of LN sentences) cases where a (PP (PRP structure\n caused an infinite recursion between NounPhrase.get_meaning() and PrepPhrase.get_meaning() in circumstances where\n self.children[1].get_text() gave an empty string. This solves the problem but I'm not completely confident this is \n the right place to trap it: in the process of debugging I noticed that there were cases where this recursion \n seemed to go a lot deeper than necessary, continuing with the same string, on some non-empty strings, though it \n did not crash. \n \"\"\"\n# -- print('PPgm-entry') # --\n self.prep = self.children[0].text\n if len(self.children) > 1 and not self.children[1].color: \n if isinstance(self.children[1],NounPhrase) and len(self.children[1].get_text()[0]) > 0: # see note above\n# -- print('PPgm-503',self.children[1].get_text()) # --\n self.meaning = self.children[1].get_meaning() \n else:\n self.meaning = \"\"\n# self.meaning = self.children[1].get_meaning() if isinstance(self.children[1],NounPhrase) else \"\" # code prior to the correction\n# -- print('PPgm-2',self.meaning) # --\n self.head = self.children[1].get_head()[0]\n \n return self.meaning",
"metadata": "root.PrepPhrase.get_meaning",
"header": "['class', 'PrepPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 524
},
{
"content": " def get_prep(self):\n \n return self.children[0].text",
"metadata": "root.PrepPhrase.get_prep",
"header": "['class', 'PrepPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 551
},
{
"content": "class VerbPhrase(Phrase):\n \"\"\"\n Subclass specific to Verb Phrases\n \n Methods\n -------\n __init__: Initialization and Instatiation\n \n is_valid: Corrects a known stanford error regarding miscoded noun phrases\n \n get_theme: Returns the coded target of the VP\n \n get_meaning: Returns event coding described by the verb phrase\n \n get_lower: Finds meanings of children\n \n get_upper: Finds grammatical subject\n \n get_code: Finds base verb code and calls match_pattern\n \n match_pattern: Matches the tree to a pattern in the Verb Dictionary\n \n get_S: Finds the closest S-level phrase above the verb\n \n match_transform: Matches an event code against transformation patterns in the dictionary\n \n \"\"\"\n\n \n \n \n \n \n\n \n \n\n\n\n \n\n\n\n\n\n\n\n \n\n\n\n \n",
"metadata": "root.VerbPhrase",
"header": "['module', '___EOS___']",
"index": 556
},
{
"content": " def __init__(self,label,date,sentence):\n Phrase.__init__(self,label,date,sentence)\n self.meaning = \"\" # \"meaning\" for the verb, i.e. the events coded by the vp\n self.upper = \"\" # contains the meaning of the noun phrase in the specifier position for the vp or its parents\n self.lower = \"\" # contains the meaning of the subtree c-commanded by the verb\n self.passive = False\n self.code = 0\n self.valid = self.is_valid()\n self.S = None",
"metadata": "root.VerbPhrase.__init__",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 584
},
{
"content": " def is_valid(self):\n \"\"\"\n This method is largely to overcome frequently made Stanford errors, where phrases like \"exiled dissidents\" were\n marked as verb phrases, and treating them as such would yield weird parses.\n \n Once such a phrase is identified because of its weird distribution, it is converted to \n a NounPhrase object\n \n \"\"\"\n try:\n if self.children[0].label == \"VBN\":\n helping = [\"HAVE\",\"HAD\",\"HAVING\",\"HAS\"]\n if ((not (self.parent.get_head()[0] in helping or self.parent.children[0].text in helping)) and\n len(filter(lambda a: isinstance(a,VerbPhrase),self.parent.children)) <= 1 and\n not self.check_passive()):\n \n self.valid = False\n \n np_replacement = NounPhrase(\"NP\",self.date,self.sentence)\n np_replacement.children = self.children\n np_replacement.parent = self.parent\n np_replacement.index = self.index\n \n self.parent.children.remove(self)\n self.parent.children.insert(self.index,np_replacement)\n del(self)\n self = np_replacement\n return False\n self.valid = True\n except IndexError as e:\n self.valid = True\n return True",
"metadata": "root.VerbPhrase.is_valid",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 594
},
{
"content": " def get_theme(self):\n \"\"\"\n This is used by the NounPhrase.get_meaning() method to determine relevant\n information in the VerbPhrase.\n \"\"\"\n m = self.get_meaning()\n if isinstance(m[0],basestring):\n return [m[0]]\n if m[0][1] == 'passive':\n return m[0][0]\n return [m[0][1]]",
"metadata": "root.VerbPhrase.get_theme",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 627
},
{
"content": " def return_meaning(self):\n return self.meaning",
"metadata": "root.VerbPhrase.return_meaning",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 639
},
{
"content": " def get_meaning(self):\n \"\"\"\n This determines the event coding of the subtree rooted in this verb phrase.\n \n Four methods are key in this process: get_upper(), get_lower(), get_code() \n and match_transform().\n \n First, get_meaning() gets the verb code from get_code()\n \n Then, it checks passivity. If the verb is passive, then it looks within \n verb phrases headed by [by, from, in] for the source, and for an explicit target\n in verb phrases headed by [at,against,into,towards]. If no target is found,\n this space is filled with 'passive', a flag used later to assign a target\n if it is in the grammatical subject position. \n \n If the verb is not passive, then the process goes:\n \n 1) call get_upper() and get_lower() to check for a grammatical subject \n and find the coding of the subtree and children, respectively.\n \n 2) If get_lower returned a list of events, combine those events with\n the upper and code, add to event list.\n \n 3) Otherwise, combine upper, lower, and code and add to event list\n \n 4) Check to see if there are S-level children, if so, combine with\n upper and code, add to list. \n \n 5) call match_transform() on all events in the list\n \n \n Parameters\n ----------\n self: VerbPhrase object that called the method\n \n Returns\n -------\n events: list\n List of events coded by the subtree rooted in this phrase.\n \n \"\"\"\n time1 = time.time()\n self.get_meaning = self.return_meaning\n \n c, passive,meta = self.get_code()\n s_options = filter(lambda a: a.label in \"SBAR\",self.children)\n\n def resolve_events(event):\n \"\"\"\n Helper method to combine events, accounting for \n missing sources, and targets, passives, multiple-\n target passives, and codeless verbs.\n \n Parameters\n ----------\n event: tuple\n (source, target, code) of lower event\n \n Returns\n -------\n returns: [tuple]\n list of resolved event tuples\n \"\"\"\n returns = []\n first,second,third = [up,\"\",\"\"]\n if not (up or c) :\n return [event]\n if not isinstance(event,tuple):\n second = event\n third = c\n if passive:\n for item in first:\n e2 = ([second],item,passive)\n self.sentence.metadata[id(e2)] = [event,meta,7]\n returns.append(e2)\n elif event[1] == 'passive':\n first = event[0]\n third = utilities.combine_code(c,event[2])\n if up:\n returns = []\n for source in up:\n e = (first,source,third)\n self.sentence.metadata[id(e)] = [event,up,1]\n returns.append(e)\n return returns\n second = 'passive'\n elif not event[0] in ['',[],[\"\"],[\"~\"],[\"~~\"]]:\n second = event\n third = c\n else:\n second = event[1]\n third = utilities.combine_code(c,event[2])\n e = (first,second,third)\n self.sentence.metadata[id(e)] = [event,c,meta ,2]\n return returns + [e]\n\n events = []\n up = self.get_upper()\n if self.check_passive() or (passive and not c):\n # Check for source in preps\n source_options = []\n target_options = up\n for child in self.children:\n if isinstance(child,PrepPhrase):\n if child.get_prep() in [\"BY\",\"FROM\",\"IN\"]:\n source_options += child.get_meaning()\n meta.append((child.prep, child.get_meaning()))\n elif child.get_prep() in [\"AT\",\"AGAINST\",\"INTO\",\"TOWARDS\"]:\n target_options += child.get_meaning()\n meta.append((child.prep, child.get_meaning()))\n if not target_options:\n target_options = [\"passive\"]\n if source_options or c:\n \n for i in target_options:\n e = (source_options, i ,c if self.check_passive() else passive)\n events.append(e)\n self.sentence.metadata[id(e)] = [None,e,meta,3]\n self.meaning = events\n return events\n \n up = \"\" if up in ['',[],[\"\"],[\"~\"],[\"~~\"]] else up\n low,neg = self.get_lower()\n if not low:\n low = \"\"\n if neg:\n c = 0\n \n if isinstance(low,list):\n for event in low:\n events += resolve_events(event)\n elif not s_options:\n if up or c:\n e = (up,low,c)\n self.sentence.metadata[id(e)] = [None,e,4]\n events.append(e)\n elif low:\n events.append(low)\n\n lower = map(lambda a: a.get_meaning(),s_options)\n sents = []\n\n for item in lower:\n sents += item\n \n if sents and not events: # Only if nothing else has been found do we look at lower NP's?\n # This decreases our coding frequency, but removes many false positives\n for event in sents:\n if isinstance(event,tuple) and (event[1] or event[2]):\n for ev in resolve_events(event):\n if isinstance(ev[1],list):\n for item in ev[1]:\n local = (ev[0],item,ev[2])\n self.sentence.metadata[id(local)] = [ev,item,5]\n events.append(local)\n else:\n events += resolve_events(event)\n maps = []\n for i in events:\n evs = self.match_transform(i)\n if isinstance(evs,tuple):\n for j in evs[0]:\n maps.append(j)\n self.sentence.metadata[id(j)] = [i,evs[1],6]\n else:\n maps += evs\n self.meaning = maps\n return maps",
"metadata": "root.VerbPhrase.get_meaning",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 642
},
{
"content": " def return_upper(self):\n return self.upper",
"metadata": "root.VerbPhrase.return_upper",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 812
},
{
"content": " def return_passive(self):\n return self.passive",
"metadata": "root.VerbPhrase.return_passive",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 815
},
{
"content": " def check_passive(self):\n \"\"\"\n Check if the verb is passive under these conditions:\n 1) Verb is -ed form, which is notated by stanford as VBD or VBN\n 2) Verb has a form of \"be\" as its next highest verb \n \n Parameters\n ----------\n self: VerbPhrase object calling the method\n \n Returns\n -------\n self.passive: boolean\n Whether or not it is passive\n \"\"\"\n# -- print('cp-entry')\n self.check_passive = self.return_passive\n if True:\n if self.children[0].label in [\"VBD\",\"VBN\"]:\n level= self.parent\n if level.label == \"NP\":\n self.passive = True\n return True\n for i in range(2):\n if level and isinstance(level,VerbPhrase):\n if level.children[0].text in [\"AM\",\"IS\",\"ARE\",\"WAS\",\"WERE\",\"BE\",\"BEEN\",\"BEING\"]:\n self.passive = True\n return True\n level = level.parent\n if not level:\n break\n \n else:\n print(\"Error in passive check\")\n self.passive = False\n return False",
"metadata": "root.VerbPhrase.check_passive",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 818
},
{
"content": " def return_S(self):\n# -- print('rS-entry')\n return self.S",
"metadata": "root.VerbPhrase.return_S",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 856
},
{
"content": " def get_S(self):\n \"\"\"\n Navigate up the tree following a VP path to find the closest s-level phrase. \n There is the extra condition that if the S-level phrase is a \"TO\"-phrase \n without a second subject specified, just so that \"A wants to help B\" will\n navigate all the way up to \"A wants\" rather than stopping at \"to\"\n \n Parameters\n -----------\n self: VerbPhrase object that called the method\n \n Returns\n -------\n level: VerbPhrase object\n Lowest non-TO S-level phrase object above the verb\n \"\"\"\n# -- print('gS-entry')\n self.get_S = self.return_S\n not_found = True\n level = self\n while not_found and not level.parent is None:\n if isinstance(level.parent, VerbPhrase):\n level = level.parent\n elif level.parent.label == \"S\":\n if level.children[0].label == \"TO\" and level.index == 0:\n level = level.parent\n continue\n self.S = level.parent\n return level.parent\n else:\n return level\n return None",
"metadata": "root.VerbPhrase.get_S",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 860
},
{
"content": " def get_upper(self):\n \"\"\"\n Finds the meaning of the specifier (NP sibling) of the VP. \n \n Parameters\n -----------\n self: VerbPhrase object that called the method\n \n Returns\n -------\n self.upper: List \n Actor codes of spec-VP\n \"\"\"\n self.get_upper = self.return_upper\n for child in self.parent.children:\n if isinstance(child, NounPhrase) and not child.get_meaning() == [\"~\"]:\n self.upper = child.get_meaning()\n \n return self.upper\n return []",
"metadata": "root.VerbPhrase.get_upper",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 895
},
{
"content": " def return_lower(self):\n return self.lower",
"metadata": "root.VerbPhrase.return_lower",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 918
},
{
"content": " def get_lower(self):\n \"\"\"\n Find the meaning of the children of the VP, and whether or not there is a \"not\" in the VP.\n \n If the VP has VP children, look only at these.\n \n Otherwise, this function pretty much is identical to the NounPhrase.get_meaning() \n method, except that it doesn't look at word-level children, because it shouldn't\n have any. \n \n Parameters\n -----------\n self: VerbPhrase object that called the method\n \n Returns\n -------\n self.lower: list\n Actor codes or Event codes, depending on situation\n \n negated: boolean\n Whether a \"not\" is present\n \n \"\"\"\n \n self.get_lower = self.return_lower\n \n lower = []\n v_options = filter(lambda a: (isinstance(a,VerbPhrase) and a.is_valid()),self.children)\n \n lower = map(lambda a: a.get_meaning(),v_options)\n\n events = []\n \n if len(self.children) > 1:\n negated = (lower and self.children[1].text) == \"NOT\" \n else:\n negated = False\n \n for item in lower:\n \n if negated:\n adjusted = []\n for event in item:\n if isinstance(event,tuple):\n adjusted.append((event[0],event[1],event[2] - 0xFFFF))\n else:\n adjusted.append(event)\n item = adjusted\n events += item\n \n if events:\n self.lower = events\n return events,negated\n \n NPcodes = []\n PPcodes = []\n VPcodes = []\n \n for child in self.children:\n if isinstance(child, NounPhrase):\n NPcodes += child.get_meaning()\n elif isinstance(child, PrepPhrase):\n PPcodes += (child.get_meaning())\n elif False and child.label in \"SBAR\":\n for ch in (child.children[-1].children if child.label == \"SBAR\" else child.children):\n if isinstance(ch, NounPhrase):\n Scodes += ch.get_meaning()\n elif isinstance(ch, PrepPhrase):\n Scodes += ch.get_meaning()\n elif isinstance(ch, VerbPhrase):\n Scodes += ch.get_meaning()[1]\n \n actorcodes,agentcodes = ([],[])\n NPactor, NPagent = self.resolve_codes(NPcodes)\n PPactor, PPagent = self.resolve_codes(PPcodes)\n VPactor, VPagent = self.resolve_codes(VPcodes)\n \n actorcodes += NPactor\n if not actorcodes:\n actorcodes += PPactor\n if not actorcodes:\n actorcodes += VPactor\n \n agentcodes += NPagent\n if not agentcodes:\n agentcodes += PPagent\n if not agentcodes:\n agentcodes += VPagent\n \n self.lower = self.mix_codes(agentcodes,actorcodes)\n return self.lower,negated",
"metadata": "root.VerbPhrase.get_lower",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 921
},
{
"content": " def return_code(self):\n return self.code",
"metadata": "root.VerbPhrase.return_code",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 1013
},
{
"content": " def get_code(self):\n \"\"\"\n Match the codes from the Verb Dictionary.\n \n Step 1. Check for compound verb matches\n \n Step 2. Check for pattern matches via match_pattern() method\n \n \n Parameters\n -----------\n self: VerbPhrase object that called the method\n \n Returns\n -------\n code: int\n Code described by this verb, best read in hex\n \"\"\"\n \n self.get_code = self.return_code\n meta = []\n dict = PETRglobals.VerbDict['verbs']\n if 'AND' in map(lambda a: a.text, self.children):\n return 0,0,['and']\n patterns = PETRglobals.VerbDict['phrases']\n verb = \"TO\" if self.children[0].label == \"TO\" else self.get_head()[0]\n meta.append(verb)\n meaning = \"\"\n path = dict\n passive = False\n if verb in dict:\n code = 0\n path = dict[verb]\n if ['#'] == path.keys():\n path = path['#']\n if True or path.keys() == ['#']: # Pre-compounds are weird\n try:\n code = path['#']['code']\n meaning = path['#']['meaning']\n \n self.verbclass = meaning if not meaning == \"\" else verb\n if not code == '':\n active, passive = utilities.convert_code(code)\n self.code = active\n except:\n self.code = (0,0,[])\n else:\n # Post - compounds\n for child in self.children:\n if child.label in [\"PRT\",\"ADVP\"]:\n if child.children[0].text in path:\n meta.append(child.children[0].text)\n path = path[child.children[0].text]\n if \"#\" in path:\n try:\n code = path['#']['#']['code']\n meaning = path['#']['#']['meaning']\n self.verbclass = meaning if not meaning == \"\" else verb\n if not code == '':\n active, passive = utilities.convert_code(code)\n self.code = active\n except:\n pass\n \n# -- print('++1')\n match = self.match_pattern()\n# -- print('++2')\n if match:\n# -- print('++4',match)\n# -- print('++3',match['line'])\n meta.append(match['line'])\n# -- print(match)\n active, passive = utilities.convert_code(match['code'])\n self.code = active\n if passive and not active:\n self.check_passive = lambda : True\n self.code = passive\n return self.code, passive,meta",
"metadata": "root.VerbPhrase.get_code",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 1016
},
{
"content": " def match_transform(self,e):\n \"\"\"\n Check to see if the event e follows one of the verb transformation patterns\n specified at the bottom of the Verb Dictionary file.\n \n If the transformation is present, adjust the event accordingly. \n If no transformation is present, check if the event is of the form:\n \n a ( b . Q ) P , where Q is not a top-level verb. \n \n and then convert this to ( a b P+Q )\n \n Otherwise, return the event as-is.\n \n Parameters\n -----------\n e: tuple\n Event to be transformed\n \n Returns\n -------\n t: list of tuples\n List of modified events, since multiple events can come from one single event\n \"\"\"\n \n \n def recurse(pdict,event,a2v = {}, v2a = {}):\n path = pdict\n if isinstance(pdict,list):\n line = pdict[1]\n path = pdict[0]\n verb = utilities.convert_code(path[2])[0] if not path[2] == \"Q\" else v2a[\"Q\"]\n if isinstance(v2a[path[1]],tuple):\n results = []\n for item in v2a[path[1]]:\n results.append((list(v2a[path[0]]),item,verb))\n return results, line\n return [(list(v2a[path[0]]),v2a[path[1]],verb)], line\n \n if isinstance(event,tuple):\n actor = None if not event[0] else tuple(event[0])\n masks = filter(lambda a :a in pdict, [event[2],event[2] - event[2] % 0x10,\n event[2] - event[2] % 0x100,event[2] - event[2] % 0x1000])\n if masks:\n path = pdict[masks[0]]\n elif -1 in pdict:\n v2a[\"Q\"] = event[2]\n path = pdict[-1]\n else:\n return False\n else:\n actor = event\n if actor in a2v:\n actor = a2v[actor]\n if not actor:\n actor = \"_\"\n if actor in path:\n return recurse(path[actor],event[1],a2v,v2a)\n elif not actor == '_':\n for var in sorted(path.keys())[::-1]:\n if var in v2a:\n continue\n if not var == '.':\n v2a[var] = actor\n a2v[actor] = var\n return recurse(path[var],event[1],a2v,v2a)\n return False\n \n \n try :\n t = recurse(PETRglobals.VerbDict['transformations'],e)\n if t:\n return t\n else:\n \n if e[0] and e[2] and isinstance(e[1],tuple) and e[1][0] and not e[1][2] / (16 ** 3):\n if isinstance(e[1][0],list):\n results = []\n for item in e[1][0]:\n event =(e[0],item,utilities.combine_code(e[1][2],e[2]))\n results.append(event)\n return results\n event =(e[0],e[1][0],utilities.combine_code(e[2],e[1][2]))\n return [event]\n\n\n except Exception as ex:\n pass #print(ex)\n return [e]",
"metadata": "root.VerbPhrase.match_transform",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 1097
},
{
"content": " def match_pattern(self):\n \"\"\" \n Match the tree against patterns specified in the dictionary. For a more illustrated explanation\n of how this process works, see the Petrarch2.pdf file in the documentation. \n \n \n Parameters\n -----------\n self: VerbPhrase object that called the method\n \n Returns\n -------\n False if no match, dict of match if present.\n \n \"\"\"\n meaning = self.verbclass\n code = self.code\n\n def match_phrase(path,phrase):\n # Having matched the head of the phrase, this matches the full noun phrase, if specified\n# -- print('mph-entry')\n if not phrase:\n# -- print('mph-False')\n return False\n for item in filter(lambda b: b.text in path,phrase.children):\n subpath = path[item.text]\n# -- print('mph-rr-1')\n match = reroute(subpath,lambda a: match_phrase(a,item.head_phrase))\n if match:\n item.color = True\n return match\n# -- print('mph-reroute') \n return reroute(path,lambda a: match_phrase(a,phrase.head_phrase))\n \n def match_noun(path,phrase = self if not self.check_passive() else self.get_S(),preplimit = 0):\n # Matches a noun or head of noun phrase\n# -- print('mn-entry')\n noun_phrases = []\n if not phrase:\n return False\n if preplimit:\n for sib in phrase.children:\n if isinstance(sib,PrepPhrase) and len(sib.children) > 1 and sib.get_prep() in [\"BY\",\"FROM\"] :\n noun_phrases.append(sib.children[1])\n else:\n for child in phrase.children:\n if child.label in (\"NP\",\"ADVP\"):\n noun_phrases.append(child)\n if isinstance(phrase,NounPhrase):\n noun_phrases.append(phrase)\n \n for item in noun_phrases:\n head,headphrase = item.get_head()\n \n if head and head in path:\n subpath = path[head]\n \n # First check within the NP for PP's\n skip = lambda a: False\n match = reroute(subpath, skip , skip , lambda a: match_prep(a,item), skip ,0)\n if match:\n headphrase.children[-1].color = True\n return match\n\n # Then check the other siblings\n match = reroute(subpath,(lambda a : match_phrase(a,item.head_phrase))\n if isinstance(item,NounPhrase) else None ) # pas 16.04.21: Trapped None by having reroute return False\n if match:\n headphrase.children[-1].color = True\n return match\n if '^' in path:\n phrase.color = True\n# -- print('mn-reroute1')\n return reroute(path['^'], lambda a: match_phrase(a,phrase.head_phrase))\n# -- print('mn-reroute2')\n return reroute(path,lambda a: match_phrase(a,phrase.head_phrase))\n\n def match_prep(path,phrase=self):\n # Matches preposition\n# -- print('mp-entry')\n for item in filter(lambda b: isinstance(b,PrepPhrase),phrase.children):\n prep = item.children[0].text\n if prep in path:\n subpath = path[prep]\n# -- print('mp-reroute1') \n match = reroute(subpath,\n lambda a : match_noun(a,item.children[1])if len(item.children) > 1 else False,\n match_prep)\n if match:\n# -- print('mp-False')\n return match\n# -- print('mp-reroute2') \n return reroute(path, o2 = match_prep)\n\n def reroute(subpath, o1 = match_noun, o2 = match_noun, o3 = match_prep, o4 = match_noun, exit = 1):\n# -- print('rr-entry:') # ,subpath\n if not o1: # match_noun() can call reroute() with o1 == None; guessing returning False is the appropriate response pas 16.04.21\n return False\n if '-' in subpath:\n match = o1(subpath['-'])\n if match:\n# -- print('rr-- match')\n return match\n \n if ',' in subpath:\n# -- print('rr-,')\n match = o2(subpath[','])\n if match:\n return match\n \n if '|' in subpath:\n# -- print('rr-|')\n match = o3(subpath['|'])\n if match:\n return match\n \n if '*' in subpath:\n# -- print('rr-*')\n match = o4(subpath['*'])\n if match:\n return match\n \n if '#' in subpath and exit:\n# -- print('rr-#')\n return subpath['#']\n \n# -- print('rr-False')\n return False\n \n # Match pattern\n if meaning in PETRglobals.VerbDict['phrases']:\n path = PETRglobals.VerbDict['phrases'][meaning]\n if self.check_passive():\n return match_noun(path,self,1)\n else:\n return match_noun(path,self.get_S())\n return False",
"metadata": "root.VerbPhrase.match_pattern",
"header": "['class', 'VerbPhrase', '(', 'Phrase', ')', ':', '___EOS___']",
"index": 1188
},
{
"content": "class Sentence:\n \"\"\"\n Holds the information of a sentence and its tree.\n \n Methods\n -------\n \n __init__ : Initialization and instantiation\n \n str_to_tree: Reads CoreNLP parse into memory\n \n get_events: Extracts events from sentence tree\n \n print_tree: Prints tree to a LaTeX file\n \n \n \n \n Metadata\n --------\n \n The sentence will return with a \"metadata\" dict. This has two parts.\n \n - sent.metadata['nouns'] will be a list of pairs of the form\n \n ( [Words that were coded], [Codes produced])\n \n Each list in the tuple usually only has one element, but sometimes multiple can occur\n \n - The other elements of sent.metadata have the key as the event, and\n the value as a list of lists. Each element of the value list contains\n some information about verbs that combined to form that event. The first\n element usually contains the primary verb and pattern that was matched on, and the latter\n elements are helping verbs that were combined with it.\n \n \n For example, the metadata for the sentence \n \n BOKO HARAM HAS LAUNCHED MANY SIMILAR ATTACKS DURING ITS SIX-YEAR CAMPAIGN FOR A STRICT ISLAMIC STATE IN NORTHEASTERN NIGERIA .\n \n \n Looks like:\n \n {\n (u'NGAREB', u'NGAMUS', u'190'): [[u'LAUNCHED', '- * ATTACKS [190]'],\n [u'HAS']],\n \n u'nouns': [([u'BOKO HARAM'], [u'NGAREB']),\n ([u'NIGERIA'], [u'NGA']),\n ([u'ISLAMIC'], [u'NGAMUS'])]}\n }\n \n \n \"\"\"\n \n \n\n\n\n\n \n \n \n\n\n\n '''def print_to_file(self,root,file = \"\"):\n\n \"\"\"Prints a LaTeX representation of the tree to a file, calls the recursive method\n print_tree() on the tree to print all of it\n \"\"\"\n print(\"\"\" \n \\\\resizebox{\\\\textwidth}{250pt}{%\n \\\\begin{tikzpicture}\n \\\\Tree\"\"\", file=file, end=\" \")\n\n self.print_tree(root, \"\", file)\n print(\"\\\\end{tikzpicture}}\\n\\n\", file=file)\n print(\"EVENTS: \",self.get_events(), file = file)\n print(\"\\\\\\\\\\nTEXT: \", self.txt, file=file)\n print(\"\\\\newpage\",file=file)'''\n \n ",
"metadata": "root.Sentence",
"header": "['module', '___EOS___']",
"index": 1328
},
{
"content": " def __init__(self, parse, text, date):\n self.treestr = parse.replace(')', ' )')\n self.parse = parse\n self.agent = \"\"\n self.ID = -1\n self.actor = \"\"\n self.date = date\n self.longlat = (-1,-1)\n self.verbs = []\n self.txt = \"\"\n self.tree = self.str_to_tree(parse.strip())\n self.verb_analysis = {}\n self.events = []\n self.metadata = {'nouns': [] }",
"metadata": "root.Sentence.__init__",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1382
},
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"content": " def str_to_tree(self,str):\n \"\"\"\n Take the Stanford CoreNLP parse and convert it to an object/pointer tree.\n \n Parameters\n -----------\n str: string \n Pre-processed CoreNLP parse, needs to be formated by utilities.format_parsed_str\n before being passed.\n \n Returns\n -------\n root: Phrase object\n Top level of the tree that represents the sentence\n \"\"\"\n segs = str.split()\n root = Phrase(segs[0][1:],self.date, self )\n level_stack = [root]\n existentials = []\n \n for element in segs[1:]:\n if element.startswith(\"(\"):\n lab = element[1:]\n if lab == \"NP\":\n new = NounPhrase(lab, self.date, self)\n elif lab == \"VP\":\n new = VerbPhrase(lab,self.date, self)\n self.verbs.append(new)\n elif lab == \"PP\":\n new = PrepPhrase(lab, self.date, self)\n else:\n new = Phrase(lab, self.date, self)\n if lab == \"EX\":\n existentials.append(new)\n \n new.parent = level_stack[-1]\n new.index = len(level_stack[-1].children)\n level_stack[-1].children.append(new)\n level_stack.append(new)\n elif element.endswith(\")\"):\n try:\n level_stack.pop()\n except:\n break\n else:\n level_stack[-1].text = element\n self.txt += \" \" +element\n \n for element in existentials:\n try:\n element.parent.convert_existential()\n except:\n pass\n return root",
"metadata": "root.Sentence.str_to_tree",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1398
},
{
"content": " def print_nouns(self,label): # -- \n \"\"\" Debugging print \"\"\"\n print(label)\n for la in self.metadata['nouns']:\n print(' ',la)",
"metadata": "root.Sentence.print_nouns",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1454
},
{
"content": " def get_metadata(self, entry):\n \n metadict = self.metadata\n next = entry\n store = \"\"\n meta_total = []\n while id(next) in metadict:\n store = metadict[id(next)]\n meta_total.append(store)\n next = store[0]\n #if not meta_total:\n # print(entry,self.txt)\n # exit()\n return map(lambda a: a[-2] if len(a) > 1 else a[0], meta_total[::-1])",
"metadata": "root.Sentence.get_metadata",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1461
},
{
"content": " def return_events(self):\n return self.events",
"metadata": "root.Sentence.return_events",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1477
},
{
"content": " def get_events(self,require_dyad = 1):\n \"\"\"\n Take the coding of the highest verb phrase and return that, given:\n 1) Target and source are both present\n 2) Code is non-zero\n 3) Target isn't another event\n \n Parameters\n -----------\n self: Sentence object calling the method\n \n Returns\n -------\n valid: list\n List of coded events that satisfy the above conditions, of form\n (source, target, code) where the code has been converted from an int\n back into CAMEO\n \n \"\"\"\n \n events = map(lambda a : a.get_meaning(), filter(lambda b: b.label in \"SVP\" , self.tree.children))\n meta = {'nouns' : self.metadata['nouns'] }\n \"\"\"print('GF1',events) # -- \n# -- print('GF2',meta) # -- \n self.print_nouns('GF2') # -- \"\"\" \n valid = []\n try:\n for sent in events:\n for event in sent:\n if event[1] == 'passive':\n event = (event[0],None,event[2])\n if isinstance(event,tuple) and isinstance(event[1],basestring) :\n \n code = utilities.convert_code(event[2],0)\n print('checking event', event, hex(event[2]))\n if event[0] and event[1] and code :\n for source in event[0]:\n valid.append((source.replace('~','---'),event[1].replace('~','---'),code))\n meta[(source.replace('~','---'),event[1].replace('~','---'),code)] = self.get_metadata(event)\n \n elif (not require_dyad) and event[0] and code and not event[1]:\n for source in event[0]:\n valid.append((source.replace('~','---'),\"---\",code))\n \n elif (not require_dyad) and event[1] and code and not event[0]:\n valid.append((\"---\",event[1].replace('~','---'),code))\n \n \n # If there are multiple actors in a cooperation scenario, code their cooperation as well\n if len(event[0]) > 1 and (not event[1]) and code and code[:2] in [\"03\",\"04\",\"05\",\"06\"]:\n for source in event[0]:\n for target in event[0]:\n if not source == target:\n valid.append((source.replace('~','---'),target.replace('~','---'),code))\n \n self.events = list(set(valid))\n self.get_events = self.return_events\n# -- print('GF3',valid,'\\nGF4',meta) # -- \n return valid , meta\n except Exception as e:\n print(\"Error in parsing:\",e)\n return None, None",
"metadata": "root.Sentence.get_events",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1481
},
{
"content": " def print_to_file(self,root,file = \"\"):\n \"\"\"\n Simplified version of the above for GF\n \"\"\"\n print(\"EVENTS: \",self.get_events(), file = file)\n txtstrg = self.txt.encode('ascii', 'ignore').decode('ascii') # <16.03.29> For now, just zap the unicode\n print(\"TEXT: \", txtstrg, file=file)",
"metadata": "root.Sentence.print_to_file",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1561
},
{
"content": " def print_tree(self, root, indent=\"\", f=\"\"):\n \"\"\"\n This prints a LaTeX formatted document of the tree. Calls on each of the children as well.\n \"\"\"\n print(\"[.\"+root.label.replace(\"$\",\"\"),(\"{\\\\bf \"+root.text+\"}\" if not root.text == \"\" else \"\") ,file = f,end = \" \")\n if root.label in [\"NP\"]:\n m = root.get_meaning()\n k = \"\"\n for i in m:\n k += \"+\" + i\n print(\"[.{\" + k + \"}\", file=f, end=\" \")\n elif root.label in [\"VP\"]:\n m = root.get_meaning()\n print(\"[.{\\it \"+utilities.code_to_string(m)+\"}\",file = f,end = \" \")\n \n for child in root.children:\n self.print_tree(child,indent+\"\\t\",f)\n if root.label in [\"NP\",\"VP\"]:\n print(\" ] ]\",file = f,end=\" \\n\")\n else:\n print(\" ]\", file=f, end=\" \")",
"metadata": "root.Sentence.print_tree",
"header": "['class', 'Sentence', ':', '___EOS___']",
"index": 1569
}
]
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"span": "import types",
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Unused import | alimanfoo/vcfnp/vcfnp/__init__.py | [
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"content": "# -*- coding: utf-8 -*-\nfrom __future__ import absolute_import, print_function, division\n\n\n__version__ = '2.3.0.dev0'\n\n\nimport vcfnp.config as config\nimport vcfnp.eff as eff\nfrom vcfnp.vcflib import PyVariantCallFile as VariantCallFile\nfrom vcfnp.array import variants, calldata, calldata_2d, view2d\nfrom vcfnp.table import VariantsTable\n",
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Except block handles 'BaseException' | modflowpy/flopy/flopy/modflow/mfhfb.py | [
{
"content": " @staticmethod\n def load(f, model, ext_unit_dict=None):\n \"\"\"\n Load an existing package.\n\n Parameters\n ----------\n f : filename or file handle\n File to load.\n model : model object\n The model object (of type: class:`flopy.modflow.mf.Modflow`) \n to which this package will be added.\n ext_unit_dict : dictionary, optional\n If the arrays in the file are specified using EXTERNAL,\n or older style array control records, then `f` should be a file\n handle. In this case ext_unit_dict is required, which can be\n constructed using the function\n :class:`flopy.utils.mfreadnam.parsenamefile`.\n\n Returns\n -------\n hfb : ModflowHfb object\n ModflowHfb object (of type :class:`flopy.modflow.mfbas.ModflowHfb`)\n\n Examples\n --------\n\n >>> import flopy\n >>> m = flopy.modflow.Modflow()\n >>> hfb = flopy.modflow.ModflowHfb.load('test.hfb', m)\n\n \"\"\"\n\n if model.verbose:\n sys.stdout.write('loading hfb6 package file...\\n')\n\n if not hasattr(f, 'read'):\n filename = f\n f = open(filename, 'r')\n # dataset 0 -- header\n while True:\n line = f.readline()\n if line[0] != '#':\n break\n # dataset 1\n t = line.strip().split()\n nphfb = int(t[0])\n mxfb = int(t[1])\n nhfbnp = int(t[2])\n # check for no-print suppressor\n options = []\n aux_names = []\n if len(t) > 2:\n it = 2\n while it < len(t):\n toption = t[it]\n #print it, t[it]\n if toption.lower() is 'noprint':\n options.append(toption)\n elif 'aux' in toption.lower():\n options.append(' '.join(t[it:it + 2]))\n aux_names.append(t[it + 1].lower())\n it += 1\n it += 1\n # data set 2 and 3\n if nphfb > 0:\n dt = ModflowHfb.get_empty(1).dtype\n pak_parms = mfparbc.load(f, nphfb, dt, model.verbose)\n # data set 4\n bnd_output = None\n if nhfbnp > 0:\n specified = ModflowHfb.get_empty(nhfbnp)\n for ibnd in range(nhfbnp):\n line = f.readline()\n if \"open/close\" in line.lower():\n raise NotImplementedError(\"load() method does not support \\'open/close\\'\")\n t = line.strip().split()\n specified[ibnd] = tuple(t[:len(specified.dtype.names)])\n\n # convert indices to zero-based\n specified['k'] -= 1\n specified['irow1'] -= 1\n specified['icol1'] -= 1\n specified['irow2'] -= 1\n specified['icol2'] -= 1\n\n bnd_output = np.recarray.copy(specified)\n\n if nphfb > 0:\n partype = ['hydchr']\n line = f.readline()\n t = line.strip().split()\n nacthfb = int(t[0])\n for iparm in range(nacthfb):\n line = f.readline()\n t = line.strip().split()\n pname = t[0].lower()\n iname = 'static'\n par_dict, current_dict = pak_parms.get(pname)\n data_dict = current_dict[iname]\n #print par_dict\n #print data_dict\n\n par_current = ModflowHfb.get_empty(par_dict['nlst'])\n\n #\n if model.mfpar.pval is None:\n parval = np.float(par_dict['parval'])\n else:\n try:\n parval = np.float(model.mfpar.pval.pval_dict[pname])\n except:\n parval = np.float(par_dict['parval'])\n\n # fill current parameter data (par_current)\n for ibnd, t in enumerate(data_dict):\n par_current[ibnd] = tuple(t[:len(par_current.dtype.names)])\n\n # convert indices to zero-based\n par_current['k'] -= 1\n par_current['irow1'] -= 1\n par_current['icol1'] -= 1\n par_current['irow2'] -= 1\n par_current['icol2'] -= 1\n\n for ptype in partype:\n par_current[ptype] *= parval\n\n if bnd_output is None:\n bnd_output = np.recarray.copy(par_current)\n else:\n bnd_output = stack_arrays((bnd_output, par_current),\n asrecarray=True, usemask=False)\n\n hfb = ModflowHfb(model, nphfb=0, mxfb=0, nhfbnp=len(bnd_output),\n hfb_data=bnd_output,\n nacthfb=0, options=options)\n return hfb",
"metadata": "root.ModflowHfb.load",
"header": "['class', 'ModflowHfb', '(', 'Package', ')', ':', '___EOS___']",
"index": 196
}
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|
Unused import | pybrain/pybrain/pybrain/supervised/trainers/svmtrainer.py | [
{
"content": "from __future__ import print_function\n\n__author__ = \"Martin Felder, [email protected]\"\n\ntry:\n from svm import svm_model, svm_parameter, svm_problem, cross_validation #@UnresolvedImport\n from svm import C_SVC, NU_SVC, ONE_CLASS, EPSILON_SVR, NU_SVR #@UnresolvedImport @UnusedImport\n from svm import LINEAR, POLY, RBF, SIGMOID, PRECOMPUTED #@UnresolvedImport @UnusedImport\nexcept ImportError:\n raise ImportError(\"Cannot find LIBSVM installation. Make sure svm.py and svmc.* are in the PYTHONPATH!\")\n\nfrom numpy import * #@UnusedWildImport\nimport logging\n\n\n\n \n \n\n \n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class SVMTrainer(object):\n \"\"\"A class performing supervised learning of a DataSet by an SVM unit. See \n the remarks on :class:`SVMUnit` above. This whole class is a bit of a hack,\n and provided mostly for convenience of comparisons.\"\"\"\n \n \n \n \n \n \n \n ",
"metadata": "root.SVMTrainer",
"header": "['module', '___EOS___']",
"index": 15
},
{
"content": " def __init__(self, svmunit, dataset, modelfile=None, plot=False):\n \"\"\" Initialize data and unit to be trained, and load the model, if \n provided.\n \n The passed `svmunit` has to be an object of class :class:`SVMUnit` \n that is going to be trained on the :class:`ClassificationDataSet` object\n dataset. \n Compared to FNN training we do not use a test data set, instead 5-fold \n cross-validation is performed if needed.\n \n If `modelfile` is provided, this model is loaded instead of training.\n If `plot` is True, a grid search is performed and the resulting pattern\n is plotted.\"\"\"\n self.svm = svmunit\n self.ds = dataset\n self.svmtarget = dataset['target'].flatten()\n self.plot = plot\n self.searchlog = 'gridsearch_results.txt'\n # set default parameters for training\n self.params = {\n 'kernel_type':RBF\n }\n\n if modelfile is not None: self.load(modelfile)",
"metadata": "root.SVMTrainer.__init__",
"header": "['class', 'SVMTrainer', '(', 'object', ')', ':', '___EOS___']",
"index": 20
},
{
"content": " def train(self, search=False, **kwargs):\n \"\"\" Train the SVM on the dataset. For RBF kernels (the default), an optional meta-parameter search can be performed.\n\n :key search: optional name of grid search class to use for RBF kernels: 'GridSearch' or 'GridSearchDOE' \n :key log2g: base 2 log of the RBF width parameter\n :key log2C: base 2 log of the slack parameter\n :key searchlog: filename into which to dump the search log\n :key others: ...are passed through to the grid search and/or libsvm \n \"\"\"\n \n self.setParams(**kwargs)\n problem = svm_problem(self.ds['target'].flatten(), self.ds['input'].tolist())\n if search:\n # this is a bit of a hack...\n model = eval(search + \"(problem, self.svmtarget, cmin=[0,-7],cmax=[25,1], cstep=[0.5,0.2],plotflag=self.plot,searchlog=self.searchlog,**self.params)\")\n else:\n param = svm_parameter(**self.params)\n model = svm_model(problem, param)\n logging.info(\"Training completed with parameters:\")\n logging.info(repr(param))\n\n self.svm.setModel(model)",
"metadata": "root.SVMTrainer.train",
"header": "['class', 'SVMTrainer', '(', 'object', ')', ':', '___EOS___']",
"index": 46
},
{
"content": " def save(self, filename):\n \"\"\" save the trained SVM \"\"\"\n self.svm.saveModel(filename)",
"metadata": "root.SVMTrainer.save",
"header": "['class', 'SVMTrainer', '(', 'object', ')', ':', '___EOS___']",
"index": 70
},
{
"content": " def load(self, filename):\n \"\"\" no training at all - just load the SVM model from a file \"\"\"\n self.svm.loadModel(filename)",
"metadata": "root.SVMTrainer.load",
"header": "['class', 'SVMTrainer', '(', 'object', ')', ':', '___EOS___']",
"index": 75
},
{
"content": " def setParams(self, **kwargs):\n \"\"\" Set parameters for SVM training. Apart from the ones below, you can use all parameters \n defined for the LIBSVM svm_model class, see their documentation.\n\n :key searchlog: Save a list of coordinates and the achieved CV accuracy to this file.\"\"\"\n if 'weight' in kwargs:\n self.params['nr_weight'] = len(kwargs['weight'])\n if 'log2C' in kwargs:\n self.params['C'] = 2 ** kwargs['log2C']\n kwargs.pop('log2C')\n if 'log2g' in kwargs:\n self.params['gamma'] = 2 ** kwargs['log2g']\n kwargs.pop('log2g')\n if 'searchlog' in kwargs:\n self.searchlog = kwargs['searchlog']\n kwargs.pop('searchlog')\n self.params.update(kwargs)",
"metadata": "root.SVMTrainer.setParams",
"header": "['class', 'SVMTrainer', '(', 'object', ')', ':', '___EOS___']",
"index": 79
},
{
"content": "class GridSearch(svm_model):\n \"\"\"Helper class used by :class:`SVMTrainer` to perform an exhaustive grid search, and plot the\n resulting accuracy surface, if desired. Adapted from the LIBSVM python toolkit.\"\"\"\n \n allPts = []\n allScores = []\n \n \n \n \n \n\n\n\n ",
"metadata": "root.GridSearch",
"header": "['module', '___EOS___']",
"index": 99
},
{
"content": " def __init__(self, problem, targets, cmin, cmax, cstep=None, crossval=5,\n plotflag=False, maxdepth=8, searchlog='gridsearch_results.txt', **params):\n \"\"\" Set up (log) grid search over the two RBF kernel parameters C and gamma.\n\n :arg problem: the LIBSVM svm_problem to be optimized, ie. the input and target data\n :arg targets: unfortunately, the targets used in the problem definition have to be given again here\n :arg cmin: lower left corner of the log2C/log2gamma window to search\n :arg cmax: upper right corner of the log2C/log2gamma window to search\n :key cstep: step width for log2C and log2gamma (ignored for DOE search)\n :key crossval: split dataset into this many parts for cross-validation\n :key plotflag: if True, plot the error surface contour (regular) or search pattern (DOE)\n :key maxdepth: maximum window bisection depth (DOE only)\n :key searchlog: Save a list of coordinates and the achieved CV accuracy to this file\n :key others: ...are passed through to the cross_validation method of LIBSVM\n \"\"\"\n self.nPars = len(cmin)\n self.usermin = cmin\n self.usermax = cmax\n self.userstep = cstep\n self.crossval = crossval\n self.plotflag = plotflag\n self.maxdepth = maxdepth # number of zoom-in steps (DOE search only!)\n \n # set default parameters for training\n self.params = params\n \n if self.plotflag:\n import pylab as p \n p.ion()\n p.figure(figsize=[12, 8])\n \n assert isinstance(problem, svm_problem)\n self.problem = problem\n self.targets = targets\n \n self.resfile = open(searchlog, 'w')\n\n # do the parameter searching\n param = self.search()\n \n if self.plotflag: \n p.ioff()\n p.show()\n \n self.resfile.close()\n svm_model.__init__(self, problem, param)",
"metadata": "root.GridSearch.__init__",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 106
},
{
"content": " def setParams(self, **kwargs):\n \"\"\" set parameters for SVM training \"\"\"\n if 'weight' in kwargs:\n self.params['nr_weight'] = len(kwargs['weight'])\n self.params.update(kwargs)",
"metadata": "root.GridSearch.setParams",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 153
},
{
"content": " def search(self):\n \"\"\" iterate successive parameter grid refinement and evaluation; adapted from LIBSVM grid search tool \"\"\"\n jobs = self.calculate_jobs()\n scores = []\n for line in jobs:\n for (c, g) in line:\n # run cross-validation for this point\n self.setParams(C=2 ** c, gamma=2 ** g)\n param = svm_parameter(**self.params)\n cvresult = array(cross_validation(self.problem, param, self.crossval))\n corr, = where(cvresult == self.targets)\n res = (c, g, float(corr.size) / self.targets.size) \n scores.append(res)\n self._save_points(res)\n self._redraw(scores)\n scores = array(scores)\n best = scores[scores[:, 0].argmax(), 1:]\n self.setParams(C=2 ** best[0], gamma=2 ** best[1])\n logging.info(\"best log2C=%12.7g, log2g=%11.7g \" % (best[0], best[1]))\n param = svm_parameter(**self.params)\n return param",
"metadata": "root.GridSearch.search",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 159
},
{
"content": " def _permute_sequence(self, seq):\n \"\"\" helper function to create a nice sequence of refined regular grids; from LIBSVM grid search tool \"\"\"\n n = len(seq)\n if n <= 1: return seq\n \n mid = int(n / 2)\n left = self._permute_sequence(seq[:mid])\n right = self._permute_sequence(seq[mid + 1:])\n \n ret = [seq[mid]]\n while left or right:\n if left: ret.append(left.pop(0))\n if right: ret.append(right.pop(0))\n \n return ret",
"metadata": "root.GridSearch._permute_sequence",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 182
},
{
"content": " def _range_f(self, begin, end, step):\n \"\"\" like range, but works on non-integer too; from LIBSVM grid search tool \"\"\" \n seq = []\n while 1:\n if step > 0 and begin > end: break\n if step < 0 and begin < end: break\n seq.append(begin)\n begin = begin + step\n return seq",
"metadata": "root.GridSearch._range_f",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 198
},
{
"content": " def calculate_jobs(self):\n \"\"\" like range, but works on non-integer too; from LIBSVM grid search tool \"\"\" \n c_seq = self._permute_sequence(self._range_f(self.usermin[0], self.usermax[0], self.userstep[0]))\n g_seq = self._permute_sequence(self._range_f(self.usermin[1], self.usermax[1], self.userstep[1]))\n nr_c = float(len(c_seq))\n nr_g = float(len(g_seq))\n global total_points\n total_points = (nr_g + 1) * (nr_g)\n i = 0\n j = 0\n jobs = []\n \n while i < nr_c or j < nr_g:\n if i / nr_c < j / nr_g:\n # increase C resolution\n line = []\n for k in range(0, j):\n line.append((c_seq[i], g_seq[k]))\n i = i + 1\n jobs.append(line)\n else:\n # increase g resolution\n line = []\n for k in range(0, i):\n line.append((c_seq[k], g_seq[j]))\n j = j + 1\n jobs.append(line)\n return jobs",
"metadata": "root.GridSearch.calculate_jobs",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 208
},
{
"content": " def _save_points(self, res):\n \"\"\" save the list of points and corresponding scores into a file \"\"\"\n self.resfile.write(\"%g, %g, %g\\n\" % res)\n logging.info(\"log2C=%g, log2g=%g, res=%g\" % res)\n self.resfile.flush()",
"metadata": "root.GridSearch._save_points",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 237
},
{
"content": " def _redraw(self, db, tofile=0, eta=None):\n \"\"\" redraw the updated grid interactively \"\"\"\n import pylab as p \n if len(db) <= 3 or not self.plotflag: return\n #begin_level = round(max(map(lambda(x):x[2],db))) - 3\n #step_size = 0.25\n nContours = 25\n #suffix = ''\n #if eta is not None:\n # suffix = \" (ETA: %5.2f min)\" % eta\n def cmp (x, y):\n if x[0] < y[0]: return - 1\n if x[0] > y[0]: return 1\n if x[1] > y[1]: return - 1\n if x[1] < y[1]: return 1\n return 0\n db.sort(cmp)\n dbarr = p.asarray(db)\n # reconstruct grid: array is ordered along first and second dimension\n x = dbarr[:, 0]\n dimy = len(x[x == x[0]])\n dimx = x.size / dimy\n print(('plotting: ', dimx, dimy))\n x = x.reshape(dimx, dimy)\n y = dbarr[:, 1]\n y = y.reshape(dimx, dimy)\n z = dbarr[:, 2].reshape(dimx, dimy)\n \n # plot using manual double buffer\n p.ioff()\n p.clf()\n p.contourf(x, y, z, nContours)\n p.hsv()\n p.colorbar()\n p.xlim(self.usermin[0], self.usermax[0])\n p.ylim(self.usermin[1], self.usermax[1])\n p.xlabel(r'$\\rm{log}_2(C)$')\n p.ylabel(r'$\\rm{log}_2(\\gamma)$')\n p.ion()\n p.draw_if_interactive()",
"metadata": "root.GridSearch._redraw",
"header": "['class', 'GridSearch', '(', 'svm_model', ')', ':', '___EOS___']",
"index": 243
},
{
"content": "class GridSearchDOE(GridSearch):\n \"\"\" Same as GridSearch, but implements a design-of-experiments based search pattern, as\n described by C. Staelin, http://www.hpl.hp.com/techreports/2002/HPL-2002-354R1.pdf \"\"\"\n\n # DOE pattern; the last 5 points do not need to be calculated when refining the grid \n doepat = array([[0.5, 1], [0.25, 0.75], [0.75, 0.75], [0, 0.5], [1, 0.5], \\\n [0.25, 0.25], [0.75, 0.25], [0.5, 0], [0, 1], [1, 1], [0.5, 0.5], [0, 0], [1, 0]])\n nPts = 13\n depth = 0\n \n \n \n ",
"metadata": "root.GridSearchDOE",
"header": "['module', '___EOS___']",
"index": 286
},
{
"content": " def search(self, cmin=None, cmax=None):\n \"\"\" iterate parameter grid refinement and evaluation recursively \"\"\"\n if self.depth > self.maxdepth:\n # maximum search depth reached - finish up\n best = self.allPts[self.allScores.argmax(), :]\n logging.info(\"best log2C=%12.7g, log2g=%11.7g \" % (best[0], best[1]))\n self.setParams(C=2 ** best[0], gamma=2 ** best[1])\n param = svm_parameter(**self.params)\n logging.info(\"Grid search completed! Final parameters:\")\n logging.info(repr(param))\n return param\n \n # generate DOE gridpoints using current range\n if cmin is None:\n # use initial values, if none given\n cmin = array(self.usermin)\n cmax = array(self.usermax)\n points = self.refineGrid(cmin, cmax)\n \n # calculate scores for all grid points using n-fold cross-validation\n scores = []\n isnew = array([True] * self.nPts)\n for i in range(self.nPts):\n idx = self._findIndex(points[i, :])\n if idx >= 0:\n # point already exists\n isnew[i] = False\n scores.append(self.allScores[idx])\n else: \n # new point, run cross-validation\n self.setParams(C=2 ** points[i, 0], gamma=2 ** points[i, 1])\n param = svm_parameter(**self.params)\n cvresult = array(cross_validation(self.problem, param, self.crossval))\n # save cross validation result as \"% correct\" \n corr, = where(cvresult == self.targets)\n corr = float(corr.size) / self.targets.size\n scores.append(corr)\n self._save_points((points[i, 0], points[i, 1], corr))\n\n scores = array(scores)\n \n # find max and new ranges by halving the old ones, whereby\n # entire search region must lie within original search range\n newctr = points[scores.argmax(), :].copy()\n newdiff = (cmax - cmin) / 4.0\n for i in range(self.nPars):\n newctr[i] = min([max([newctr[i], self.usermin[i] + newdiff[i]]), self.usermax[i] - newdiff[i]])\n cmin = newctr - newdiff\n cmax = newctr + newdiff\n logging.info(\"depth:\\t%3d\\tcrange:\\t%g\\tscore:\\t%g\" % (self.depth, cmax[0] - cmin[0], scores.max()))\n \n # append points and scores to the full list\n if self.depth == 0:\n self.allPts = points[isnew, :].copy()\n self.allScores = scores[isnew].copy()\n else:\n self.allPts = append(self.allPts, points[isnew, :], axis=0)\n self.allScores = append(self.allScores, scores[isnew], axis=0)\n \n if self.plotflag:\n import pylab as p \n if self.depth == 0:\n self.oPlot = p.plot(self.allPts[:, 0], self.allPts[:, 1], 'o')[0]\n # insert new data into plot\n self.oPlot.set_data(self.allPts[:, 0], self.allPts[:, 1])\n p.draw()\n \n # recursively call ourselves\n self.depth += 1 \n return self.search(cmin, cmax)",
"metadata": "root.GridSearchDOE.search",
"header": "['class', 'GridSearchDOE', '(', 'GridSearch', ')', ':', '___EOS___']",
"index": 296
},
{
"content": " def refineGrid(self, cmin, cmax):\n \"\"\" given grid boundaries, generate the corresponding DOE pattern from template\"\"\"\n diff = array((cmax - cmin).tolist()*self.nPts).reshape(self.nPts, self.nPars)\n return self.doepat * diff + array(cmin.tolist()*self.nPts).reshape(self.nPts, self.nPars)",
"metadata": "root.GridSearchDOE.refineGrid",
"header": "['class', 'GridSearchDOE', '(', 'GridSearch', ')', ':', '___EOS___']",
"index": 368
},
{
"content": " def _findIndex(self, point):\n \"\"\" determines whether given point already exists in list of all calculated points.\n raises exception if more than one point is found, returns -1 if no point is found \"\"\"\n if self.depth == 0: return - 1\n check = self.allPts[:, 0] == point[0]\n for i in range(1, point.size):\n check = check & (self.allPts[:, i] == point[i])\n idx, = where(check)\n if idx.size == 0:\n return - 1\n elif idx.size > 1:\n logging.error(\"Something went wrong - found more than one matching point!\")\n logging.error(str(point))\n logging.error(str(self.allPts))\n raise\n else:\n return idx[0]",
"metadata": "root.GridSearchDOE._findIndex",
"header": "['class', 'GridSearchDOE', '(', 'GridSearch', ')', ':', '___EOS___']",
"index": 373
}
]
| [
{
"span": "from svm import C_SVC, NU_SVC, ONE_CLASS, EPSILON_SVR, NU_SVR ",
"start_line": 6,
"start_column": 4,
"end_line": 6,
"end_column": 65
},
{
"span": "from svm import LINEAR, POLY, RBF, SIGMOID, PRECOMPUTED ",
"start_line": 7,
"start_column": 4,
"end_line": 7,
"end_column": 59
}
]
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Unused import | frappe/frappe/frappe/utils/sel.py | [
{
"content": "# Copyright (c) 2015, Frappe Technologies Pvt. Ltd. and Contributors\n# MIT License. See license.txt\n\nfrom __future__ import unicode_literals\n\nfrom selenium.webdriver.common.keys import Keys\nfrom selenium import webdriver\nfrom selenium.webdriver.common.by import By\nfrom selenium.webdriver.support.ui import WebDriverWait\nfrom selenium.webdriver.support.select import Select\nfrom selenium.webdriver.support import expected_conditions as EC\nfrom selenium.common.exceptions import TimeoutException\nfrom urllib import unquote\nimport time, subprocess\nimport signal\nimport sys\n\nhost = \"http://localhost\"\npipe = None\nport = \"8000\"\n_driver = None\n_verbose = None\nlogged_in = False\ncur_route = False\ninput_wait = 0\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "def get_localhost():\n\treturn \"{host}:{port}\".format(host=host, port=port)",
"metadata": "root.get_localhost",
"header": "['module', '___EOS___']",
"index": 26
},
{
"content": "def start(verbose=None, driver=None):\n\tglobal _driver, _verbose\n\t_verbose = verbose\n\n\t_driver = getattr(webdriver, driver or \"PhantomJS\")()\n\t_driver.set_window_size(1080,800)\n\n\tsignal.signal(signal.SIGINT, signal_handler)",
"metadata": "root.start",
"header": "['module', '___EOS___']",
"index": 29
},
{
"content": "def signal_handler(signal, frame):\n\tclose()\n\tsys.exit(0)",
"metadata": "root.signal_handler",
"header": "['module', '___EOS___']",
"index": 38
},
{
"content": "def start_test_server(verbose):\n\tglobal pipe\n\tpipe = subprocess.Popen([\"bench\", \"serve\", \"--port\", port], stdout=subprocess.PIPE, stderr=subprocess.PIPE)\n\t#time.sleep(5)\n\twhile not pipe.stderr.readline():\n\t\ttime.sleep(0.5)\n\tif verbose:\n\t\tprint \"Test server started\"",
"metadata": "root.start_test_server",
"header": "['module', '___EOS___']",
"index": 42
},
{
"content": "def get(url):\n\t_driver.get(url)",
"metadata": "root.get",
"header": "['module', '___EOS___']",
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},
{
"content": "def login(wait_for_id=\"#page-desktop\"):\n\tglobal logged_in\n\tif logged_in:\n\t\treturn\n\tget(get_localhost() + \"/login\")\n\twait(\"#login_email\")\n\tset_input(\"#login_email\", \"Administrator\")\n\tset_input(\"#login_password\", \"admin\", key=Keys.RETURN)\n\twait(wait_for_id)\n\tlogged_in = True",
"metadata": "root.login",
"header": "['module', '___EOS___']",
"index": 54
},
{
"content": "def go_to_module(module_name, item=None):\n\tglobal cur_route\n\n\t# desktop\n\tfind(\".navbar-home\", True)[0].click()\n\tcur_route = None\n\twait(\"#page-desktop\")\n\n\tpage = \"Module/\" + module_name\n\tm = find('#page-desktop [data-link=\"{0}\"] .app-icon'.format(page))\n\tif not m:\n\t\tpage = \"List/\" + module_name\n\t\tm = find('#page-desktop [data-link=\"{0}\"] .app-icon'.format(page))\n\tif not m:\n\t\traise Exception, \"Module {0} not found\".format(module_name)\n\n\tm[0].click()\n\twait_for_page(page)\n\n\tif item:\n\t\telem = find('[data-label=\"{0}\"]'.format(item))[0]\n\t\telem.click()\n\t\tpage = elem.get_attribute(\"data-route\")\n\t\twait_for_page(page)",
"metadata": "root.go_to_module",
"header": "['module', '___EOS___']",
"index": 66
},
{
"content": "def new_doc(module, doctype):\n\tgo_to_module(module, doctype)\n\tprimary_action()\n\twait_for_page(\"Form/\" + doctype)",
"metadata": "root.new_doc",
"header": "['module', '___EOS___']",
"index": 91
},
{
"content": "def add_child(fieldname):\n\tfind('[data-fieldname=\"{0}\"] .grid-add-row'.format(fieldname))[0].click()\n\twait('[data-fieldname=\"{0}\"] .form-grid'.format(fieldname))",
"metadata": "root.add_child",
"header": "['module', '___EOS___']",
"index": 96
},
{
"content": "def done_add_child(fieldname):\n\tselector = '[data-fieldname=\"{0}\"] .grid-row-open .btn-success'.format(fieldname)\n\tscroll_to(selector)\n\twait_till_clickable(selector).click()",
"metadata": "root.done_add_child",
"header": "['module', '___EOS___']",
"index": 100
},
{
"content": "def find(selector, everywhere=False):\n\tif cur_route and not everywhere:\n\t\tselector = cur_route + \" \" + selector\n\treturn _driver.find_elements_by_css_selector(selector)",
"metadata": "root.find",
"header": "['module', '___EOS___']",
"index": 105
},
{
"content": "def set_field(fieldname, value, fieldtype=\"input\"):\n\t_driver.switch_to.window(_driver.current_window_handle)\n\tselector = '{0}[data-fieldname=\"{1}\"]'.format(fieldtype, fieldname)\n\tset_input(selector, value, key=Keys.TAB)\n\twait_for_ajax()",
"metadata": "root.set_field",
"header": "['module', '___EOS___']",
"index": 110
},
{
"content": "def set_select(fieldname, value):\n\tselect = Select(find('select[data-fieldname=\"{0}\"]'.format(fieldname))[0])\n\tselect.select_by_value(value)\n\twait_for_ajax()",
"metadata": "root.set_select",
"header": "['module', '___EOS___']",
"index": 116
},
{
"content": "def primary_action():\n\tselector = \".page-actions .primary-action\"\n\tscroll_to(selector)\n\twait_till_clickable(selector).click()\n\twait_for_ajax()",
"metadata": "root.primary_action",
"header": "['module', '___EOS___']",
"index": 121
},
{
"content": "def wait_for_page(name):\n\tglobal cur_route\n\tcur_route = None\n\troute = '[data-page-route=\"{0}\"]'.format(name)\n\twait_for_ajax()\n\telem = wait(route)\n\twait_for_ajax()\n\tcur_route = route\n\treturn elem",
"metadata": "root.wait_for_page",
"header": "['module', '___EOS___']",
"index": 127
},
{
"content": "def wait_till_clickable(selector):\n\tif cur_route:\n\t\tselector = cur_route + \" \" + selector\n\treturn get_wait().until(EC.element_to_be_clickable((By.CSS_SELECTOR, selector)))",
"metadata": "root.wait_till_clickable",
"header": "['module', '___EOS___']",
"index": 137
},
{
"content": "def wait_till_visible(selector):\n\tif cur_route:\n\t\tselector = cur_route + \" \" + selector\n\treturn get_wait().until(EC.visibility_of_element_located((By.CSS_SELECTOR, selector)))",
"metadata": "root.wait_till_visible",
"header": "['module', '___EOS___']",
"index": 142
},
{
"content": "def wait_for_ajax():\n\twait('body[data-ajax-state=\"complete\"]', True)",
"metadata": "root.wait_for_ajax",
"header": "['module', '___EOS___']",
"index": 147
},
{
"content": "def wait_for_state(state):\n\treturn wait(cur_route + '[data-state=\"{0}\"]'.format(state), True)",
"metadata": "root.wait_for_state",
"header": "['module', '___EOS___']",
"index": 150
},
{
"content": "def wait(selector, everywhere=False):\n\tif cur_route and not everywhere:\n\t\tselector = cur_route + \" \" + selector\n\n\ttime.sleep(0.5)\n\telem = get_wait().until(EC.presence_of_element_located((By.CSS_SELECTOR, selector)))\n\treturn elem",
"metadata": "root.wait",
"header": "['module', '___EOS___']",
"index": 153
},
{
"content": "def get_wait():\n\treturn WebDriverWait(_driver, 20)",
"metadata": "root.get_wait",
"header": "['module', '___EOS___']",
"index": 161
},
{
"content": "def set_input(selector, text, key=None):\n\telem = find(selector)[0]\n\telem.clear()\n\telem.send_keys(text)\n\tif key:\n\t\ttime.sleep(0.5)\n\t\telem.send_keys(key)\n\tif input_wait:\n\t\ttime.sleep(input_wait)",
"metadata": "root.set_input",
"header": "['module', '___EOS___']",
"index": 164
},
{
"content": "def scroll_to(selector):\n\texecute_script(\"frappe.ui.scroll('{0}')\".format(selector))",
"metadata": "root.scroll_to",
"header": "['module', '___EOS___']",
"index": 174
},
{
"content": "def execute_script(js):\n\t_driver.execute_script(js)",
"metadata": "root.execute_script",
"header": "['module', '___EOS___']",
"index": 177
},
{
"content": "def close():\n\tglobal _driver, pipe\n\tif _driver:\n\t\t_driver.quit()\n\tif pipe:\n\t\tpipe.kill()\n\t_driver = pipe = None",
"metadata": "root.close",
"header": "['module', '___EOS___']",
"index": 180
}
]
| [
{
"span": "from selenium.common.exceptions import TimeoutException",
"start_line": 11,
"start_column": 0,
"end_line": 11,
"end_column": 55
}
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Unnecessary pass | nipy/nitime/nitime/tests/test_timeseries.py | [
{
"content": "def test_TimeArray_init_int64():\n \"\"\"Make sure that we can initialize TimeArray with an array of ints\"\"\"\n time = ts.TimeArray(np.int64(1))\n npt.assert_equal(time.__repr__(), '1.0 s')\n\n pass",
"metadata": "root.test_TimeArray_init_int64",
"header": "['module', '___EOS___']",
"index": 109
},
{
"content": "def test_event_subclass_slicing():\n \"Subclassing Events should preserve the subclass after slicing\"\n class Events_with_X(ts.Events):\n \"A class which shows as attributes all of the event data\"\n def __getattr__(self,k):\n return self.data[k]\n pass\n time = np.linspace(0,10,11)\n x,y = np.sin(time),np.cos(time)\n e = Events_with_X(time, **dict(x=x,y=y))\n npt.assert_equal(e.x, e.data['x'])\n npt.assert_equal(e.y, e.data['y'])\n slice_of_e = e[:4]\n slice_of_e.x # should not raise attribute error\n slice_of_e.y # should not raise attribute error\n npt.assert_equal(slice_of_e.x, x[:4])\n npt.assert_equal(slice_of_e.y, y[:4])\n assert(slice_of_e.__class__ == Events_with_X)",
"metadata": "root.test_event_subclass_slicing",
"header": "['module', '___EOS___']",
"index": 824
}
]
| [
{
"span": "pass",
"start_line": 114,
"start_column": 4,
"end_line": 114,
"end_column": 8
},
{
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"start_line": 830,
"start_column": 8,
"end_line": 830,
"end_column": 12
}
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`__eq__` not overridden when adding attributes | edoburu/django-parler/parler/utils/views.py | [
{
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"content": "# Copyright (c) 2015-present, Facebook, Inc.\n# All rights reserved.\n#\n# This source code is licensed under the BSD-style license found in the\n# LICENSE file in the root directory of this source tree. An additional grant\n# of patent rights can be found in the PATENTS file in the same directory.\n#\nfrom __future__ import print_function\n\nimport output\n\n\n",
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"content": " def getAttributes(self, foreColor, backColor, other):\n colorIndex = -1\n colorPair = (foreColor, backColor)\n if not colorPair in self.colors:\n newIndex = len(self.colors)\n if newIndex < self.cursesAPI.getColorPairs():\n self.cursesAPI.initPair(newIndex, foreColor, backColor)\n self.colors[colorPair] = newIndex\n colorIndex = newIndex\n else:\n colorIndex = self.colors[colorPair]\n\n attr = self.cursesAPI.colorPair(colorIndex)\n\n attr = attr | other\n\n return attr",
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"content": " def addstr(self, y, x, text, attr=None):\n if attr is None:\n attr = self.cursesAPI.colorPair(self.DEFAULT_COLOR_INDEX)\n elif attr == self.CURRENT_COLORS:\n attr = self.currentAttributes\n\n self.screen.addstr(y, x, text, attr)",
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Unused local variable | ekzhu/datasketch/benchmark/lsh_benchmark.py | [
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Unused import | edoburu/django-fluent-contents/fluent_contents/plugins/sharedcontent/south_migrations/0003_migrate_translated_fields.py | [
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"content": "# -*- coding: utf-8 -*-\nimport datetime\nfrom django.core.exceptions import ObjectDoesNotExist\nfrom south.db import db\nfrom south.v2 import DataMigration\nfrom django.db import models\nfrom fluent_contents import appsettings\n\n\n",
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"content": "class Migration(DataMigration):\n\n\n\n models = {\n u'contenttypes.contenttype': {\n 'Meta': {'ordering': \"('name',)\", 'unique_together': \"(('app_label', 'model'),)\", 'object_name': 'ContentType', 'db_table': \"'django_content_type'\"},\n 'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})\n },\n 'fluent_contents.contentitem': {\n 'Meta': {'ordering': \"('placeholder', 'sort_order')\", 'object_name': 'ContentItem'},\n u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language_code': ('django.db.models.fields.CharField', [], {'default': \"''\", 'max_length': '15', 'db_index': 'True'}),\n 'parent_id': ('django.db.models.fields.IntegerField', [], {'null': 'True'}),\n 'parent_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u\"orm['contenttypes.ContentType']\"}),\n 'placeholder': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'contentitems'\", 'null': 'True', 'on_delete': 'models.SET_NULL', 'to': \"orm['fluent_contents.Placeholder']\"}),\n 'polymorphic_ctype': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'polymorphic_fluent_contents.contentitem_set'\", 'null': 'True', 'to': u\"orm['contenttypes.ContentType']\"}),\n 'sort_order': ('django.db.models.fields.IntegerField', [], {'default': '1', 'db_index': 'True'})\n },\n 'fluent_contents.placeholder': {\n 'Meta': {'unique_together': \"(('parent_type', 'parent_id', 'slot'),)\", 'object_name': 'Placeholder'},\n u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'parent_id': ('django.db.models.fields.IntegerField', [], {'null': 'True'}),\n 'parent_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u\"orm['contenttypes.ContentType']\", 'null': 'True', 'blank': 'True'}),\n 'role': ('django.db.models.fields.CharField', [], {'default': \"'m'\", 'max_length': '1'}),\n 'slot': ('django.db.models.fields.SlugField', [], {'max_length': '50'}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '255', 'blank': 'True'})\n },\n u'sharedcontent.sharedcontent': {\n 'Meta': {'object_name': 'SharedContent'},\n u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'slug': ('django.db.models.fields.SlugField', [], {'unique': 'True', 'max_length': '50'}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '200'})\n },\n u'sharedcontent.sharedcontent_translation': {\n 'Meta': {'unique_together': \"[('language_code', 'master')]\", 'object_name': 'SharedContent_Translation'},\n u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language_code': ('django.db.models.fields.CharField', [], {'max_length': '15', 'db_index': 'True'}),\n 'master': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'translations'\", 'null': 'True', 'to': u\"orm['sharedcontent.SharedContent']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '200'})\n },\n u'sharedcontent.sharedcontentitem': {\n 'Meta': {'ordering': \"('placeholder', 'sort_order')\", 'object_name': 'SharedContentItem', 'db_table': \"u'contentitem_sharedcontent_sharedcontentitem'\", '_ormbases': ['fluent_contents.ContentItem']},\n u'contentitem_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['fluent_contents.ContentItem']\", 'unique': 'True', 'primary_key': 'True'}),\n 'shared_content': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'shared_content_items'\", 'to': u\"orm['sharedcontent.SharedContent']\"})\n }\n }\n\n complete_apps = ['sharedcontent']\n symmetrical = True",
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"content": " def forwards(self, orm):\n db.execute(\n 'INSERT INTO sharedcontent_sharedcontent_translation(title, language_code, master_id)'\n ' SELECT title, %s, id FROM sharedcontent_sharedcontent',\n [appsettings.FLUENT_CONTENTS_DEFAULT_LANGUAGE_CODE]\n )",
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"content": " def backwards(self, orm):\n # Convert all fields back to the single-language table.\n for sharedcontent in orm['sharedcontent.SharedContent'].objects.all():\n translations = orm['sharedcontent.SharedContent_Translation'].objects.filter(master_id=sharedcontent.id)\n try:\n # Try default translation\n translation = translations.get(language_code=appsettings.FLUENT_CONTENTS_DEFAULT_LANGUAGE_CODE)\n except ObjectDoesNotExist:\n try:\n # Try internal fallback\n translation = translations.get(language_code__in=('en-us', 'en'))\n except ObjectDoesNotExist:\n # Hope there is a single translation\n translation = translations.get()\n\n sharedcontent.title = translation.title\n sharedcontent.save()",
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Unreachable code | goFrendiAsgard/kokoropy/applications/routes.py | [
{
"content": "#####################################################################################\n# Configuration name : FIRST_TIME\n# Default value : True\n# Alternative value : True, False\n# If you have modify something, and want to disable kokoropy's default home page, \n# just set this to False\n#####################################################################################\nFIRST_TIME = True\n\n#####################################################################################\n# Configuration name : CUSTOM_ERROR\n# Default value : False\n# Alternative value : True, False\n# If you want to enable custom error, end let your visitor see the \n# sarcastic-human word instead of any informative-for-developer-info \n# such as \"404 Not found\", set this to true\n#####################################################################################\nCUSTOM_ERROR = False\n\n#####################################################################################\n# End of configuration\n#####################################################################################\n\nfrom kokoropy import load_view, base_url\n\n################### These functions are used for routes (url) #######################\n\n\n####################### These functions are used for hooks ##########################\n\n\n####################### These functions are used for errors #########################\n\n\n\nif FIRST_TIME:\n urls = (\n # index\n ('/', index),\n (base_url(), index),\n # getting_started\n (base_url('getting_started'), getting_started)\n )\n\nif CUSTOM_ERROR:\n hooks = (\n ('before_request', before_request),\n ('after_request', after_request)\n )\n \n errors = (\n ('404', error_404),\n ('403', error_403),\n ('500', error_500)\n )\n",
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Signature mismatch in overriding method | divio/django-cms/cms/templatetags/cms_tags.py | [
{
"content": "class CMSEditableObject(InclusionTag):\n \"\"\"\n Templatetag that links a content extracted from a generic django model\n to the model admin changeform.\n \"\"\"\n template = 'cms/toolbar/content.html'\n edit_template = 'cms/toolbar/plugin.html'\n name = 'render_model'\n options = Options(\n Argument('instance'),\n Argument('attribute'),\n Argument('edit_fields', default=None, required=False),\n Argument('language', default=None, required=False),\n Argument('filters', default=None, required=False),\n Argument('view_url', default=None, required=False),\n Argument('view_method', default=None, required=False),\n 'as',\n Argument('varname', required=False, resolve=False),\n )\n\n\n\n\n\n\n\n\n",
"metadata": "root.CMSEditableObject",
"header": "['module', '___EOS___']",
"index": 692
},
{
"content": " def __init__(self, parser, tokens):\n self.parser = parser\n super(CMSEditableObject, self).__init__(parser, tokens)",
"metadata": "root.CMSEditableObject.__init__",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 712
},
{
"content": " def _is_editable(self, request):\n return (request and hasattr(request, 'toolbar') and\n request.toolbar.edit_mode and\n request.toolbar.show_toolbar)",
"metadata": "root.CMSEditableObject._is_editable",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 716
},
{
"content": " def get_template(self, context, **kwargs):\n if self._is_editable(context.get('request', None)):\n return self.edit_template\n return self.template",
"metadata": "root.CMSEditableObject.get_template",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 721
},
{
"content": " def render_tag(self, context, **kwargs):\n \"\"\"\n Overridden from InclusionTag to push / pop context to avoid leaks\n \"\"\"\n context.push()\n template = self.get_template(context, **kwargs)\n data = self.get_context(context, **kwargs)\n output = render_to_string(template, flatten_context(data)).strip()\n context.pop()\n if kwargs.get('varname'):\n context[kwargs['varname']] = output\n return ''\n else:\n return output",
"metadata": "root.CMSEditableObject.render_tag",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 726
},
{
"content": " def _get_editable_context(self, context, instance, language, edit_fields,\n view_method, view_url, querystring, editmode=True):\n \"\"\"\n Populate the contex with the requested attributes to trigger the changeform\n \"\"\"\n request = context['request']\n if hasattr(request, 'toolbar'):\n lang = request.toolbar.toolbar_language\n else:\n lang = get_language()\n with force_language(lang):\n extra_context = {}\n if edit_fields == 'changelist':\n instance.get_plugin_name = u\"%s %s list\" % (smart_text(_('Edit')), smart_text(instance._meta.verbose_name))\n extra_context['attribute_name'] = 'changelist'\n elif editmode:\n instance.get_plugin_name = u\"%s %s\" % (smart_text(_('Edit')), smart_text(instance._meta.verbose_name))\n if not context.get('attribute_name', None):\n # Make sure CMS.Plugin object will not clash in the frontend.\n extra_context['attribute_name'] = '-'.join(edit_fields) \\\n if not isinstance('edit_fields', six.string_types) else edit_fields\n else:\n instance.get_plugin_name = u\"%s %s\" % (smart_text(_('Add')), smart_text(instance._meta.verbose_name))\n extra_context['attribute_name'] = 'add'\n extra_context['instance'] = instance\n extra_context['generic'] = instance._meta\n # view_method has the precedence and we retrieve the corresponding\n # attribute in the instance class.\n # If view_method refers to a method it will be called passing the\n # request; if it's an attribute, it's stored for later use\n if view_method:\n method = getattr(instance, view_method)\n if callable(method):\n url_base = method(context['request'])\n else:\n url_base = method\n else:\n # The default view_url is the default admin changeform for the\n # current instance\n if not editmode:\n view_url = 'admin:%s_%s_add' % (\n instance._meta.app_label, instance._meta.model_name)\n url_base = reverse(view_url)\n elif not edit_fields:\n if not view_url:\n view_url = 'admin:%s_%s_change' % (\n instance._meta.app_label, instance._meta.model_name)\n if isinstance(instance, Page):\n url_base = reverse(view_url, args=(instance.pk, language))\n else:\n url_base = reverse(view_url, args=(instance.pk,))\n else:\n if not view_url:\n view_url = 'admin:%s_%s_edit_field' % (\n instance._meta.app_label, instance._meta.model_name)\n if view_url.endswith('_changelist'):\n url_base = reverse(view_url)\n else:\n url_base = reverse(view_url, args=(instance.pk, language))\n querystring['edit_fields'] = \",\".join(context['edit_fields'])\n if editmode:\n extra_context['edit_url'] = \"%s?%s\" % (url_base, urlencode(querystring))\n else:\n extra_context['edit_url'] = \"%s\" % url_base\n extra_context['refresh_page'] = True\n # We may be outside the CMS (e.g.: an application which is not attached via Apphook)\n # in this case we may only go back to the home page\n if getattr(context['request'], 'current_page', None):\n extra_context['redirect_on_close'] = context['request'].current_page.get_absolute_url(language)\n else:\n extra_context['redirect_on_close'] = ''\n return extra_context",
"metadata": "root.CMSEditableObject._get_editable_context",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 741
},
{
"content": " def _get_content(self, context, instance, attribute, language, filters):\n \"\"\"\n Renders the requested attribute\n \"\"\"\n extra_context = copy(context)\n attr_value = None\n if hasattr(instance, 'lazy_translation_getter'):\n attr_value = instance.lazy_translation_getter(attribute, '')\n if not attr_value:\n attr_value = getattr(instance, attribute, '')\n extra_context['content'] = attr_value\n # This allow the requested item to be a method, a property or an\n # attribute\n if callable(extra_context['content']):\n if isinstance(instance, Page):\n extra_context['content'] = extra_context['content'](language)\n else:\n extra_context['content'] = extra_context['content'](context['request'])\n if filters:\n expression = self.parser.compile_filter(\"content|%s\" % (filters))\n extra_context['content'] = expression.resolve(extra_context)\n return extra_context",
"metadata": "root.CMSEditableObject._get_content",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 814
},
{
"content": " def _get_data_context(self, context, instance, attribute, edit_fields,\n language, filters, view_url, view_method):\n \"\"\"\n Renders the requested attribute and attach changeform trigger to it\n\n Uses `_get_empty_context`\n \"\"\"\n if not attribute:\n return context\n attribute = attribute.strip()\n # ugly-ish\n if isinstance(instance, Page):\n if attribute == 'title':\n attribute = 'get_title'\n if not edit_fields:\n edit_fields = 'title'\n elif attribute == 'page_title':\n attribute = 'get_page_title'\n if not edit_fields:\n edit_fields = 'page_title'\n elif attribute == 'menu_title':\n attribute = 'get_menu_title'\n if not edit_fields:\n edit_fields = 'menu_title'\n elif attribute == 'titles':\n attribute = 'get_title'\n if not edit_fields:\n edit_fields = 'title,page_title,menu_title'\n view_url = 'admin:cms_page_edit_title_fields'\n extra_context = copy(context)\n extra_context['attribute_name'] = attribute\n extra_context = self._get_empty_context(extra_context, instance,\n edit_fields, language, view_url,\n view_method)\n extra_context.update(self._get_content(extra_context, instance, attribute,\n language, filters))\n # content is for non-edit template content.html\n # rendered_content is for edit template plugin.html\n # in this templatetag both hold the same content\n extra_context['content'] = mark_safe(extra_context['content'])\n extra_context['rendered_content'] = extra_context['content']\n return extra_context",
"metadata": "root.CMSEditableObject._get_data_context",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 837
},
{
"content": " def _get_empty_context(self, context, instance, edit_fields, language,\n view_url, view_method, editmode=True):\n \"\"\"\n Inject in a copy of the context the data requested to trigger the edit.\n\n `content` and `rendered_content` is emptied.\n \"\"\"\n if not language:\n language = get_language_from_request(context['request'])\n # This allow the requested item to be a method, a property or an\n # attribute\n if not instance and editmode:\n return context\n extra_context = copy(context)\n # ugly-ish\n if instance and isinstance(instance, Page):\n if edit_fields == 'titles':\n edit_fields = 'title,page_title,menu_title'\n view_url = 'admin:cms_page_edit_title_fields'\n if edit_fields == 'changelist':\n view_url = 'admin:%s_%s_changelist' % (\n instance._meta.app_label, instance._meta.model_name)\n querystring = OrderedDict((('language', language),))\n if edit_fields:\n extra_context['edit_fields'] = edit_fields.strip().split(\",\")\n # If the toolbar is not enabled the following part is just skipped: it\n # would cause a perfomance hit for no reason\n if self._is_editable(context.get('request', None)):\n extra_context.update(self._get_editable_context(\n extra_context, instance, language, edit_fields, view_method,\n view_url, querystring, editmode))\n # content is for non-edit template content.html\n # rendered_content is for edit template plugin.html\n # in this templatetag both hold the same content\n extra_context['content'] = ''\n extra_context['rendered_content'] = ''\n return extra_context",
"metadata": "root.CMSEditableObject._get_empty_context",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 880
},
{
"content": " def get_context(self, context, instance, attribute, edit_fields,\n language, filters, view_url, view_method, varname):\n \"\"\"\n Uses _get_data_context to render the requested attributes\n \"\"\"\n extra_context = self._get_data_context(context, instance, attribute,\n edit_fields, language, filters,\n view_url, view_method)\n extra_context['render_model'] = True\n return extra_context",
"metadata": "root.CMSEditableObject.get_context",
"header": "['class', 'CMSEditableObject', '(', 'InclusionTag', ')', ':', '___EOS___']",
"index": 918
},
{
"content": "class CMSEditableObjectIcon(CMSEditableObject):\n \"\"\"\n Templatetag that links a content extracted from a generic django model\n to the model admin changeform.\n\n The output of this templatetag is just an icon to trigger the changeform.\n \"\"\"\n name = 'render_model_icon'\n options = Options(\n Argument('instance'),\n Argument('edit_fields', default=None, required=False),\n Argument('language', default=None, required=False),\n Argument('view_url', default=None, required=False),\n Argument('view_method', default=None, required=False),\n 'as',\n Argument('varname', required=False, resolve=False),\n )\n",
"metadata": "root.CMSEditableObjectIcon",
"header": "['module', '___EOS___']",
"index": 931
},
{
"content": " def get_context(self, context, instance, edit_fields, language,\n view_url, view_method, varname):\n \"\"\"\n Uses _get_empty_context and adds the `render_model_icon` variable.\n \"\"\"\n extra_context = self._get_empty_context(context, instance, edit_fields,\n language, view_url, view_method)\n extra_context['render_model_icon'] = True\n return extra_context",
"metadata": "root.CMSEditableObjectIcon.get_context",
"header": "['class', 'CMSEditableObjectIcon', '(', 'CMSEditableObject', ')', ':', '___EOS___']",
"index": 949
},
{
"content": "class CMSEditableObjectAdd(CMSEditableObject):\n \"\"\"\n Templatetag that links a content extracted from a generic django model\n to the model admin changeform.\n\n The output of this templatetag is just an icon to trigger the changeform.\n \"\"\"\n name = 'render_model_add'\n options = Options(\n Argument('instance'),\n Argument('language', default=None, required=False),\n Argument('view_url', default=None, required=False),\n Argument('view_method', default=None, required=False),\n 'as',\n Argument('varname', required=False, resolve=False),\n )\n",
"metadata": "root.CMSEditableObjectAdd",
"header": "['module', '___EOS___']",
"index": 961
},
{
"content": " def get_context(self, context, instance, language,\n view_url, view_method, varname):\n \"\"\"\n Uses _get_empty_context and adds the `render_model_icon` variable.\n \"\"\"\n if isinstance(instance, Model) and not instance.pk:\n instance.pk = 0\n extra_context = self._get_empty_context(context, instance, None,\n language, view_url, view_method,\n editmode=False)\n extra_context['render_model_add'] = True\n return extra_context",
"metadata": "root.CMSEditableObjectAdd.get_context",
"header": "['class', 'CMSEditableObjectAdd', '(', 'CMSEditableObject', ')', ':', '___EOS___']",
"index": 978
},
{
"content": "class CMSEditableObjectAddBlock(CMSEditableObject):\n \"\"\"\n Templatetag that links arbitrary content to the addform for the specified\n model (based on the provided model instance).\n \"\"\"\n name = 'render_model_add_block'\n options = Options(\n Argument('instance'),\n Argument('language', default=None, required=False),\n Argument('view_url', default=None, required=False),\n Argument('view_method', default=None, required=False),\n 'as',\n Argument('varname', required=False, resolve=False),\n blocks=[('endrender_model_add_block', 'nodelist')],\n )\n\n",
"metadata": "root.CMSEditableObjectAddBlock",
"header": "['module', '___EOS___']",
"index": 993
},
{
"content": " def render_tag(self, context, **kwargs):\n \"\"\"\n Renders the block and then inject the resulting HTML in the template\n context\n \"\"\"\n context.push()\n template = self.get_template(context, **kwargs)\n data = self.get_context(context, **kwargs)\n data['content'] = mark_safe(kwargs['nodelist'].render(data))\n data['rendered_content'] = data['content']\n output = render_to_string(template, flatten_context(data))\n context.pop()\n if kwargs.get('varname'):\n context[kwargs['varname']] = output\n return ''\n else:\n return output",
"metadata": "root.CMSEditableObjectAddBlock.render_tag",
"header": "['class', 'CMSEditableObjectAddBlock', '(', 'CMSEditableObject', ')', ':', '___EOS___']",
"index": 1009
},
{
"content": " def get_context(self, context, instance, language,\n view_url, view_method, varname, nodelist):\n \"\"\"\n Uses _get_empty_context and adds the `render_model_icon` variable.\n \"\"\"\n if isinstance(instance, Model) and not instance.pk:\n instance.pk = 0\n extra_context = self._get_empty_context(context, instance, None,\n language, view_url, view_method,\n editmode=False)\n extra_context['render_model_add'] = True\n return extra_context",
"metadata": "root.CMSEditableObjectAddBlock.get_context",
"header": "['class', 'CMSEditableObjectAddBlock', '(', 'CMSEditableObject', ')', ':', '___EOS___']",
"index": 1027
},
{
"content": "class CMSEditableObjectBlock(CMSEditableObject):\n \"\"\"\n Templatetag that links a content extracted from a generic django model\n to the model admin changeform.\n\n The rendered content is to be specified in the enclosed block.\n \"\"\"\n name = 'render_model_block'\n options = Options(\n Argument('instance'),\n Argument('edit_fields', default=None, required=False),\n Argument('language', default=None, required=False),\n Argument('view_url', default=None, required=False),\n Argument('view_method', default=None, required=False),\n 'as',\n Argument('varname', required=False, resolve=False),\n blocks=[('endrender_model_block', 'nodelist')],\n )\n\n",
"metadata": "root.CMSEditableObjectBlock",
"header": "['module', '___EOS___']",
"index": 1042
},
{
"content": " def render_tag(self, context, **kwargs):\n \"\"\"\n Renders the block and then inject the resulting HTML in the template\n context\n \"\"\"\n context.push()\n template = self.get_template(context, **kwargs)\n data = self.get_context(context, **kwargs)\n data['content'] = mark_safe(kwargs['nodelist'].render(data))\n data['rendered_content'] = data['content']\n output = render_to_string(template, flatten_context(data))\n context.pop()\n if kwargs.get('varname'):\n context[kwargs['varname']] = output\n return ''\n else:\n return output",
"metadata": "root.CMSEditableObjectBlock.render_tag",
"header": "['class', 'CMSEditableObjectBlock', '(', 'CMSEditableObject', ')', ':', '___EOS___']",
"index": 1061
},
{
"content": " def get_context(self, context, instance, edit_fields, language,\n view_url, view_method, varname, nodelist):\n \"\"\"\n Uses _get_empty_context and adds the `instance` object to the local\n context. Context here is to be intended as the context of the nodelist\n in the block.\n \"\"\"\n extra_context = self._get_empty_context(context, instance, edit_fields,\n language, view_url, view_method)\n extra_context['instance'] = instance\n extra_context['render_model_block'] = True\n return extra_context",
"metadata": "root.CMSEditableObjectBlock.get_context",
"header": "['class', 'CMSEditableObjectBlock', '(', 'CMSEditableObject', ')', ':', '___EOS___']",
"index": 1079
}
]
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"span": "def get_context(self, context, instance, language,\n view_url, view_method, varname, nodelist):",
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"end_column": 62
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| [
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"end_column": 71
}
]
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|
Module is imported more than once | ctuning/ck/ck/repo/module/web/module.py | [
{
"content": "#\n# Collective Knowledge (CK web service)\n#\n# See CK LICENSE.txt for licensing details\n# See CK COPYRIGHT.txt for copyright details\n#\n# Developer: Grigori Fursin\n#\n\ncfg={} # Will be updated by CK (meta description of this module)\nwork={} # Will be updated by CK (temporal data)\nck=None # Will be updated by CK (initialized CK kernel) \n\ns_host=''\ns_port=''\n\n# Local settings\nimport os\nimport sys\nimport cgi\nimport urllib\nimport base64\nimport tempfile\n\n# Import various modules while supporting both Python 2.x and 3.x\ntry:\n from http.server import BaseHTTPRequestHandler, HTTPServer\nexcept:\n from BaseHTTPServer import BaseHTTPRequestHandler, HTTPServer\n\ntry:\n import urllib.parse as urlparse\nexcept:\n import urlparse\n\ntry:\n from urllib.parse import quote as urlquote\nexcept:\n from urllib import quote as urlquote\n\ntry:\n from urllib.parse import unquote as urlunquote\nexcept:\n from urllib import unquote as urlunquote\n\n#try:\n# import http.cookies as Cookie\n#except:\n# import Cookie\n\ntry:\n from socketserver import ThreadingMixIn\nexcept:\n from SocketServer import ThreadingMixIn\n\n##############################################################################\n# Initialize module\n\n\n##############################################################################\n# Access CK through CMD (can detach console)\n\n\n##############################################################################\n# Send error to HTTP stream\n\n\n##############################################################################\n# Send error to HTTP stream\n\n\n##############################################################################\n# Process CK web service request (both GET and POST)\n\n\n##############################################################################\n# Class to handle requests in separate threads\n\n\n##############################################################################\n# Class to handle CK web service requests\n\n\n##############################################################################\n# start web service\n\n\n##############################################################################\n# test web\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "def process_ck_web_request(i):\n\n \"\"\"\n\n Input: {\n http - Python http object\n }\n\n Output: { None }\n \"\"\"\n\n # http object\n http=i['http']\n\n # Parse GET variables and path\n xget={}\n xpath={'host':'', 'port':'', 'first':'', 'rest':'', 'query':''} # May be used in the future\n\n xt='json'\n\n xpath['host']=i.get('host','')\n xpath['port']=i.get('port','')\n\n # Check GET variables\n if http.path!='':\n http.send_response(200)\n\n a=urlparse.urlparse(http.path)\n xp=a.path\n xr=''\n\n if xp.startswith('/'): xp=xp[1:]\n\n u=xp.find('/')\n if u>=0:\n xr=xp[u+1:]\n xp=xp[:u]\n\n xt=xp\n\n xpath['first']=xp\n xpath['rest']=xr\n xpath['query']=a.query\n b=urlparse.parse_qs(a.query, keep_blank_values=True, )\n\n xget={}\n for k in b:\n# xget[k]=b[k][0]\n xget[k]=urlunquote(b[k][0])\n if sys.version_info[0]<3:\n xget[k]=xget[k].decode('utf8')\n\n # Check POST\n xpost={}\n xpost1={}\n\n try:\n headers = http.headers\n content_type = headers.get('content-type')\n ctype=''\n if content_type != None:\n ctype, pdict = cgi.parse_header(content_type)\n # Python3 cgi.parse_multipart expects boundary to be bytes, not str.\n if sys.version_info[0]<3 and 'boundary' in pdict: \n pdict['boundary'] = pdict['boundary'].encode()\n\n if ctype == 'multipart/form-data':\n if sys.version_info[0]<3:\n xpost1 = cgi.parse_multipart(http.rfile, pdict)\n else:\n xxpost1 = cgi.FieldStorage(fp=http.rfile, headers=headers, environ={'REQUEST_METHOD':'POST'})\n for k in xxpost1.keys():\n xpost1[k]=[xxpost1[k].value]\n elif ctype == 'application/x-www-form-urlencoded':\n length = int(http.headers.get('content-length'))\n s=http.rfile.read(length)\n if sys.version_info[0]>2: s=s.decode('utf8')\n xpost1 = cgi.parse_qs(s, keep_blank_values=1)\n \n except Exception as e:\n bin=b'internal CK web service error [7101] ('+format(e).encode('utf8')+')'\n web_err({'http':http, 'type':xt, 'bin':bin})\n ck.out(ck.cfg['error']+bin.decode('utf8'))\n return\n\n # Post processing\n for k in xpost1:\n v=xpost1[k]\n if k.endswith('[]'): \n k1=k[:-2]\n xpost[k1]=[]\n for l in v:\n xpost[k1].append(urlunquote(l))\n else: \n if k!='file_content':\n xpost[k]=urlunquote(v[0])\n else:\n xpost[k]=v[0]\n\n if k=='file_content':\n fcrt=xpost1.get('file_content_record_to_tmp','')\n if (type(fcrt)==list and len(fcrt)>0 and fcrt[0]=='yes') or fcrt=='yes':\n fd, fn=tempfile.mkstemp(suffix='.tmp', prefix='ck-') # suffix is important - CK will delete such file!\n os.close(fd)\n\n f=open(fn,'wb')\n f.write(xpost[k])\n f.close()\n\n xpost[k+'_uploaded']=fn\n del(xpost[k])\n k+='_uploaded'\n else:\n import base64\n xpost[k+'_base64']=base64.urlsafe_b64encode(xpost[k]).decode('utf8')\n del(xpost[k])\n k+='_base64'\n\n if sys.version_info[0]<3:\n xpost[k]=xpost[k].decode('utf8')\n\n # Prepare input and check if CK json present\n ii=xget\n ii.update(xpost)\n\n cj=ii.get('ck_json','').strip()\n if cj!='':\n r=ck.convert_json_str_to_dict({'str':cj, 'skip_quote_replacement':'yes'})\n if r['return']>0: \n bin=b'internal CK web service error [7102] ('+r['error'].encode('utf8')+b')'\n web_err({'http':http, 'type':xt, 'bin':bin})\n ck.out(ck.cfg['error']+bin.decode('utf8'))\n return\n\n del(ii['ck_json'])\n ii.update(r['dict'])\n\n # Misc parameters\n dc=ii.get('detach_console','')\n act=ii.get('action','')\n\n # Check output type\n if ii.get('out','')!='': \n xt=ii['out']\n\n if xt=='': xt='web'\n\n if xt!='json' and xt!='con' and xt!='web':\n web_out({'http':http, \n 'type':'web', \n 'bin':b'Unknown CK request ('+xt.encode('utf8')+b')!'})\n return\n\n # Prepare temporary output file\n fd, fn=tempfile.mkstemp(prefix='ck-')\n os.close(fd)\n os.remove(fn)\n\n # Check output\n if dc=='yes':\n if ck.cfg.get('forbid_detached_console','')=='yes':\n web_out({'http':http, \n 'type':'web', \n 'bin':b'Detached console is forbidden!'})\n return\n else:\n ii['out_file']=fn\n ii['web']='yes'\n if xt=='json' or xt=='web': \n ii['out']='json_file'\n # else output to console (for remote access for example)\n\n ii['con_encoding']='utf8'\n\n ii['server_host']=s_host\n ii['server_port']=s_port\n\n # Execute command *********************************************************\n if act=='':\n if cfg.get('if_web_action_not_defined','')!='' and cfg.get('if_web_module_not_defined','')!='':\n ii['module_uoa']=cfg['if_web_module_not_defined']\n ii['action']=cfg['if_web_action_not_defined']\n\n r=call_ck(ii)\n\n # Process output\n if r['return']>0:\n if os.path.isfile(fn): os.remove(fn)\n\n bout=r['error']\n\n try: bout=bout.encode('utf-8')\n except Exception as e: pass\n \n web_err({'http':http, \n 'type':xt, \n 'bin':bout})\n return\n\n # If output to console or detached console\n if xt=='con' or dc=='yes': \n if os.path.isfile(fn): os.remove(fn)\n\n bout=r.get('std','').encode('utf8')\n\n web_out({'http':http, 'type':xt, 'bin':bout})\n\n return\n\n # If json or web\n # Try to load output file\n if not os.path.isfile(fn):\n web_err({'http':http, \n 'type':xt, \n 'bin':b'Output json file was not created, see output ('+r['std'].encode('utf8')+b')!'})\n return\n\n r=ck.load_text_file({'text_file':fn, 'keep_as_bin':'yes'})\n if r['return']>0:\n bout=r['error']\n\n try: bout=bout.encode('utf-8')\n except Exception as e: pass\n\n web_err({'http':http, 'type':xt, 'bin':bout})\n\n return\n\n bin=r['bin']\n \n if os.path.isfile(fn): os.remove(fn)\n\n # Process JSON output from file\n fx=''\n\n if sys.version_info[0]>2: bin=bin.decode('utf-8')\n\n ru=ck.convert_json_str_to_dict({'str':bin, 'skip_quote_replacement':'yes'})\n if ru['return']>0:\n bout=ru['error']\n\n try: bout=bout.encode('utf-8')\n except Exception as e: pass\n\n web_err({'http':http, 'type':xt, 'bin':bout})\n\n return\n\n rr=ru['dict']\n if rr['return']>0:\n bout=rr['error']\n\n try: bout=bout.encode('utf-8')\n except Exception as e: pass\n\n web_err({'http':http, 'type':xt, 'bin':bout})\n return\n\n # Check if file was returned\n fr=False\n\n if 'file_content_base64' in rr and rr.get('filename','')!='':\n fr=True\n\n # Check if download\n if (xt=='web' and fr) or (act=='pull' and xt!='json'):\n import base64\n x=rr.get('file_content_base64','')\n\n fx=rr.get('filename','')\n if fx=='': fx=ck.cfg['default_archive_name']\n\n # Fixing Python bug\n if sys.version_info[0]==3 and sys.version_info[1]<3:\n x=x.encode('utf-8')\n else:\n x=str(x)\n bin=base64.urlsafe_b64decode(x) # convert from unicode to str since base64 works on strings\n # should be safe in Python 2.x and 3.x\n\n # Process extension\n fn1, fne = os.path.splitext(fx)\n if fne.startswith('.'): fne=fne[1:]\n if fne!='': xt=fne\n else: xt='unknown'\n else:\n # Check and output html\n if rr.get('html','')!='':\n bin=rr['html'].encode('utf-8')\n else:\n if sys.version_info[0]>2: # Unknown output\n bin=bin.encode('utf-8')\n\n web_out({'http':http, 'type':xt, 'bin':bin, 'filename':fx})\n \n return {'return':0}",
"metadata": "root.process_ck_web_request",
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|
Imprecise assert | zunzun/pyeq2/UnitTests/Test_ExtendedVersionHandlers.py | [
{
"content": " def test_ExtendedVersion_Exponential_WithOffset_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Offset')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_Offset')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx) + Offset')\n self.assertEqual(equation.GetDisplayName(), 'Exponential With Offset')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b', 'Offset'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 0.018)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Exponential_WithOffset_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 21
},
{
"content": " def test_ExtendedVersion_Reciprocal_Exponential_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Reciprocal')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_Reciprocal')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = 1.0 / y')\n self.assertEqual(equation.GetDisplayName(), 'Reciprocal Exponential')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 1.9)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Reciprocal_Exponential_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 37
},
{
"content": " def test_ExtendedVersion_Reciprocal_Exponential_WithOffset_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Reciprocal With Offset')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_ReciprocalWithOffset')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = 1.0 / y + Offset')\n self.assertEqual(equation.GetDisplayName(), 'Reciprocal Exponential With Offset')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b', 'Offset'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 0.018)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Reciprocal_Exponential_WithOffset_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 53
},
{
"content": " def test_ExtendedVersion_Inverse_Exponential_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Inverse')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_Inverse')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = x / y')\n self.assertEqual(equation.GetDisplayName(), 'Inverse Exponential')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 1.6)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Inverse_Exponential_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 69
},
{
"content": " def test_ExtendedVersion_Inverse_Exponential_WithOffset_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Inverse With Offset')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_InverseWithOffset')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = x / y + Offset')\n self.assertEqual(equation.GetDisplayName(), 'Inverse Exponential With Offset')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b', 'Offset'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 0.018)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Inverse_Exponential_WithOffset_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 85
},
{
"content": " def test_ExtendedVersion_Exponential_WithLinearDecay_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Linear Decay')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_LinearDecay')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = y / x')\n self.assertEqual(equation.GetDisplayName(), 'Exponential With Linear Decay')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 2.2)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Exponential_WithLinearDecay_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 101
},
{
"content": " def test_ExtendedVersion_Exponential_WithLinearDecayAndOffset_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Linear Decay And Offset')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_LinearDecayAndOffset')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = y / x + Offset')\n self.assertEqual(equation.GetDisplayName(), 'Exponential With Linear Decay And Offset')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b', 'Offset'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 0.49)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Exponential_WithLinearDecayAndOffset_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 117
},
{
"content": " def test_ExtendedVersion_Exponential_WithLinearGrowth_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Linear Growth')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_LinearGrowth')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = y * x')\n self.assertEqual(equation.GetDisplayName(), 'Exponential With Linear Growth')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 1.6)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Exponential_WithLinearGrowth_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 133
},
{
"content": " def test_ExtendedVersion_Exponential_WithLinearGrowthAndOffset_2D(self):\n equation = pyeq2.Models_2D.Exponential.Exponential('SSQABS', 'Linear Growth And Offset')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_LinearGrowthAndOffset')\n self.assertEqual(equation.GetDisplayHTML(), 'y = a * exp(bx)<br>y = y * x + Offset')\n self.assertEqual(equation.GetDisplayName(), 'Exponential With Linear Growth And Offset')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b', 'Offset'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 1)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 0.018)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Exponential_WithLinearGrowthAndOffset_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 149
},
{
"content": " def test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialGrowth_2D(self):\n equation = pyeq2.Models_2D.Exponential.AsymptoticExponentialA('SSQABS', 'Exponential Growth')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_ExponentialGrowth')\n self.assertEqual(equation.GetDisplayHTML(), 'y = 1.0 - a<sup>x</sup><br>y = y * (b * exp(x))')\n self.assertEqual(equation.GetDisplayName(), 'Asymptotic Exponential A With Exponential Growth')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 2)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 21.0)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialGrowth_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 165
},
{
"content": " def test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialGrowthAndOffset_2D(self):\n equation = pyeq2.Models_2D.Exponential.AsymptoticExponentialA('SSQABS', 'Exponential Growth And Offset')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_ExponentialGrowthAndOffset')\n self.assertEqual(equation.GetDisplayHTML(), 'y = 1.0 - a<sup>x</sup><br>y = y * (b * exp(x)) + Offset')\n self.assertEqual(equation.GetDisplayName(), 'Asymptotic Exponential A With Exponential Growth And Offset')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b', 'Offset'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 2)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 7.0)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialGrowthAndOffset_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 181
},
{
"content": " def test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialDecay_2D(self):\n equation = pyeq2.Models_2D.Exponential.AsymptoticExponentialA('SSQABS', 'Exponential Decay')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_ExponentialDecay')\n self.assertEqual(equation.GetDisplayHTML(), 'y = 1.0 - a<sup>x</sup><br>y = y / (b * exp(x))')\n self.assertEqual(equation.GetDisplayName(), 'Asymptotic Exponential A With Exponential Decay')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 2)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 1.9)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialDecay_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 197
},
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"content": " def test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialDecayAndOffset_2D(self):\n equation = pyeq2.Models_2D.Exponential.AsymptoticExponentialA('SSQABS', 'Exponential Decay And Offset')\n self.assertEqual(equation.extendedVersionHandler.__class__.__name__, 'ExtendedVersionHandler_ExponentialDecayAndOffset')\n self.assertEqual(equation.GetDisplayHTML(), 'y = 1.0 - a<sup>x</sup><br>y = y / (b * exp(x)) + Offset')\n self.assertEqual(equation.GetDisplayName(), 'Asymptotic Exponential A With Exponential Decay And Offset')\n self.assertEqual(equation.GetCoefficientDesignators(), ['a', 'b', 'Offset'])\n self.assertEqual(len(equation.GetDataCacheFunctions()), 2)\n self.assertFalse(equation.CanLinearSolverBeUsedForSSQABS())\n\n pyeq2.dataConvertorService().ConvertAndSortColumnarASCII(DataForUnitTests.asciiDataInColumns_2D, equation, False)\n \n equation.Solve()\n fittingTarget = equation.CalculateAllDataFittingTarget(equation.solvedCoefficients)\n self.assertTrue(fittingTarget <= 0.017)",
"metadata": "root.TestExtendedVersionHandlers.test_ExtendedVersion_Asymptotic_Exponential_A_WithExponentialDecayAndOffset_2D",
"header": "['class', 'TestExtendedVersionHandlers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 213
}
]
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|
Unused import | adieu/python-openid/examples/server.py | [
{
"content": "#!/usr/bin/env python\n\n__copyright__ = 'Copyright 2005-2008, Janrain, Inc.'\n\nfrom BaseHTTPServer import HTTPServer, BaseHTTPRequestHandler\nfrom urlparse import urlparse\n\nimport time\nimport Cookie\nimport cgi\nimport cgitb\nimport sys\n\n\ntry:\n import openid\nexcept ImportError:\n sys.stderr.write(\"\"\"\nFailed to import the OpenID library. In order to use this example, you\nmust either install the library (see INSTALL in the root of the\ndistribution) or else add the library to python's import path (the\nPYTHONPATH environment variable).\n\nFor more information, see the README in the root of the library\ndistribution.\"\"\")\n sys.exit(1)\n\nfrom openid.extensions import sreg\nfrom openid.server import server\nfrom openid.store.filestore import FileOpenIDStore\nfrom openid.consumer import discover\n\n\n\n\n\n\nif __name__ == '__main__':\n host = 'localhost'\n data_path = 'sstore'\n port = 8000\n\n try:\n import optparse\n except ImportError:\n pass # Use defaults (for Python 2.2)\n else:\n parser = optparse.OptionParser('Usage:\\n %prog [options]')\n parser.add_option(\n '-d', '--data-path', dest='data_path', default=data_path,\n help='Data directory for storing OpenID consumer state. '\n 'Defaults to \"%default\" in the current directory.')\n parser.add_option(\n '-p', '--port', dest='port', type='int', default=port,\n help='Port on which to listen for HTTP requests. '\n 'Defaults to port %default.')\n parser.add_option(\n '-s', '--host', dest='host', default=host,\n help='Host on which to listen for HTTP requests. '\n 'Also used for generating URLs. Defaults to %default.')\n\n options, args = parser.parse_args()\n if args:\n parser.error('Expected no arguments. Got %r' % args)\n\n host = options.host\n port = options.port\n data_path = options.data_path\n\n main(host, port, data_path)\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "def quoteattr(s):\n qs = cgi.escape(s, 1)\n return '\"%s\"' % (qs,)",
"metadata": "root.quoteattr",
"header": "['module', '___EOS___']",
"index": 13
},
{
"content": "class OpenIDHTTPServer(HTTPServer):\n \"\"\"\n http server that contains a reference to an OpenID Server and\n knows its base URL.\n \"\"\"\n",
"metadata": "root.OpenIDHTTPServer",
"header": "['module', '___EOS___']",
"index": 35
},
{
"content": " def __init__(self, *args, **kwargs):\n HTTPServer.__init__(self, *args, **kwargs)\n\n if self.server_port != 80:\n self.base_url = ('http://%s:%s/' %\n (self.server_name, self.server_port))\n else:\n self.base_url = 'http://%s/' % (self.server_name,)\n\n self.openid = None\n self.approved = {}\n self.lastCheckIDRequest = {}",
"metadata": "root.OpenIDHTTPServer.__init__",
"header": "['class', 'OpenIDHTTPServer', '(', 'HTTPServer', ')', ':', '___EOS___']",
"index": 40
},
{
"content": " def setOpenIDServer(self, oidserver):\n self.openid = oidserver",
"metadata": "root.OpenIDHTTPServer.setOpenIDServer",
"header": "['class', 'OpenIDHTTPServer', '(', 'HTTPServer', ')', ':', '___EOS___']",
"index": 53
},
{
"content": "class ServerHandler(BaseHTTPRequestHandler):\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n",
"metadata": "root.ServerHandler",
"header": "['module', '___EOS___']",
"index": 57
},
{
"content": " def __init__(self, *args, **kwargs):\n self.user = None\n BaseHTTPRequestHandler.__init__(self, *args, **kwargs)",
"metadata": "root.ServerHandler.__init__",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 58
},
{
"content": " def do_GET(self):\n try:\n self.parsed_uri = urlparse(self.path)\n self.query = {}\n for k, v in cgi.parse_qsl(self.parsed_uri[4]):\n self.query[k] = v\n\n self.setUser()\n\n path = self.parsed_uri[2].lower()\n\n if path == '/':\n self.showMainPage()\n elif path == '/openidserver':\n self.serverEndPoint(self.query)\n\n elif path == '/login':\n self.showLoginPage('/', '/')\n elif path == '/loginsubmit':\n self.doLogin()\n elif path.startswith('/id/'):\n self.showIdPage(path)\n elif path.startswith('/yadis/'):\n self.showYadis(path[7:])\n elif path == '/serveryadis':\n self.showServerYadis()\n else:\n self.send_response(404)\n self.end_headers()\n\n except (KeyboardInterrupt, SystemExit):\n raise\n except:\n self.send_response(500)\n self.send_header('Content-type', 'text/html')\n self.end_headers()\n self.wfile.write(cgitb.html(sys.exc_info(), context=10))",
"metadata": "root.ServerHandler.do_GET",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 63
},
{
"content": " def do_POST(self):\n try:\n self.parsed_uri = urlparse(self.path)\n\n self.setUser()\n content_length = int(self.headers['Content-Length'])\n post_data = self.rfile.read(content_length)\n\n self.query = {}\n for k, v in cgi.parse_qsl(post_data):\n self.query[k] = v\n\n path = self.parsed_uri[2]\n if path == '/openidserver':\n self.serverEndPoint(self.query)\n\n elif path == '/allow':\n self.handleAllow(self.query)\n else:\n self.send_response(404)\n self.end_headers()\n\n except (KeyboardInterrupt, SystemExit):\n raise\n except:\n self.send_response(500)\n self.send_header('Content-type', 'text/html')\n self.end_headers()\n self.wfile.write(cgitb.html(sys.exc_info(), context=10))",
"metadata": "root.ServerHandler.do_POST",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 101
},
{
"content": " def handleAllow(self, query):\n # pretend this next bit is keying off the user's session or something,\n # right?\n request = self.server.lastCheckIDRequest.get(self.user)\n\n if 'yes' in query:\n if 'login_as' in query:\n self.user = self.query['login_as']\n\n if request.idSelect():\n identity = self.server.base_url + 'id/' + query['identifier']\n else:\n identity = request.identity\n\n trust_root = request.trust_root\n if self.query.get('remember', 'no') == 'yes':\n self.server.approved[(identity, trust_root)] = 'always'\n\n response = self.approved(request, identity)\n\n elif 'no' in query:\n response = request.answer(False)\n\n else:\n assert False, 'strange allow post. %r' % (query,)\n\n self.displayResponse(response)",
"metadata": "root.ServerHandler.handleAllow",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 131
},
{
"content": " def setUser(self):\n cookies = self.headers.get('Cookie')\n if cookies:\n morsel = Cookie.BaseCookie(cookies).get('user')\n if morsel:\n self.user = morsel.value",
"metadata": "root.ServerHandler.setUser",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 160
},
{
"content": " def isAuthorized(self, identity_url, trust_root):\n if self.user is None:\n return False\n\n if identity_url != self.server.base_url + 'id/' + self.user:\n return False\n\n key = (identity_url, trust_root)\n return self.server.approved.get(key) is not None",
"metadata": "root.ServerHandler.isAuthorized",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 167
},
{
"content": " def serverEndPoint(self, query):\n try:\n request = self.server.openid.decodeRequest(query)\n except server.ProtocolError, why:\n self.displayResponse(why)\n return\n\n if request is None:\n # Display text indicating that this is an endpoint.\n self.showAboutPage()\n return\n\n if request.mode in [\"checkid_immediate\", \"checkid_setup\"]:\n self.handleCheckIDRequest(request)\n else:\n response = self.server.openid.handleRequest(request)\n self.displayResponse(response)",
"metadata": "root.ServerHandler.serverEndPoint",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 177
},
{
"content": " def addSRegResponse(self, request, response):\n sreg_req = sreg.SRegRequest.fromOpenIDRequest(request)\n\n # In a real application, this data would be user-specific,\n # and the user should be asked for permission to release\n # it.\n sreg_data = {\n 'nickname':self.user\n }\n\n sreg_resp = sreg.SRegResponse.extractResponse(sreg_req, sreg_data)\n response.addExtension(sreg_resp)",
"metadata": "root.ServerHandler.addSRegResponse",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 195
},
{
"content": " def approved(self, request, identifier=None):\n response = request.answer(True, identity=identifier)\n self.addSRegResponse(request, response)\n return response",
"metadata": "root.ServerHandler.approved",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 208
},
{
"content": " def handleCheckIDRequest(self, request):\n is_authorized = self.isAuthorized(request.identity, request.trust_root)\n if is_authorized:\n response = self.approved(request)\n self.displayResponse(response)\n elif request.immediate:\n response = request.answer(False)\n self.displayResponse(response)\n else:\n self.server.lastCheckIDRequest[self.user] = request\n self.showDecidePage(request)",
"metadata": "root.ServerHandler.handleCheckIDRequest",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 213
},
{
"content": " def displayResponse(self, response):\n try:\n webresponse = self.server.openid.encodeResponse(response)\n except server.EncodingError, why:\n text = why.response.encodeToKVForm()\n self.showErrorPage('<pre>%s</pre>' % cgi.escape(text))\n return\n\n self.send_response(webresponse.code)\n for header, value in webresponse.headers.iteritems():\n self.send_header(header, value)\n self.writeUserHeader()\n self.end_headers()\n\n if webresponse.body:\n self.wfile.write(webresponse.body)",
"metadata": "root.ServerHandler.displayResponse",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 225
},
{
"content": " def doLogin(self):\n if 'submit' in self.query:\n if 'user' in self.query:\n self.user = self.query['user']\n else:\n self.user = None\n self.redirect(self.query['success_to'])\n elif 'cancel' in self.query:\n self.redirect(self.query['fail_to'])\n else:\n assert 0, 'strange login %r' % (self.query,)",
"metadata": "root.ServerHandler.doLogin",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 242
},
{
"content": " def redirect(self, url):\n self.send_response(302)\n self.send_header('Location', url)\n self.writeUserHeader()\n\n self.end_headers()",
"metadata": "root.ServerHandler.redirect",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 254
},
{
"content": " def writeUserHeader(self):\n if self.user is None:\n t1970 = time.gmtime(0)\n expires = time.strftime(\n 'Expires=%a, %d-%b-%y %H:%M:%S GMT', t1970)\n self.send_header('Set-Cookie', 'user=;%s' % expires)\n else:\n self.send_header('Set-Cookie', 'user=%s' % self.user)",
"metadata": "root.ServerHandler.writeUserHeader",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 261
},
{
"content": " def showAboutPage(self):\n endpoint_url = self.server.base_url + 'openidserver'\n\n def link(url):\n url_attr = quoteattr(url)\n url_text = cgi.escape(url)\n return '<a href=%s><code>%s</code></a>' % (url_attr, url_text)\n\n def term(url, text):\n return '<dt>%s</dt><dd>%s</dd>' % (link(url), text)\n\n resources = [\n (self.server.base_url, \"This example server's home page\"),\n ('http://www.openidenabled.com/',\n 'An OpenID community Web site, home of this library'),\n ('http://www.openid.net/', 'the official OpenID Web site'),\n ]\n\n resource_markup = ''.join([term(url, text) for url, text in resources])\n\n self.showPage(200, 'This is an OpenID server', msg=\"\"\"\\\n <p>%s is an OpenID server endpoint.<p>\n <p>For more information about OpenID, see:</p>\n <dl>\n %s\n </dl>\n \"\"\" % (link(endpoint_url), resource_markup,))",
"metadata": "root.ServerHandler.showAboutPage",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 270
},
{
"content": " def showErrorPage(self, error_message):\n self.showPage(400, 'Error Processing Request', err='''\\\n <p>%s</p>\n <!--\n\n This is a large comment. It exists to make this page larger.\n That is unfortunately necessary because of the \"smart\"\n handling of pages returned with an error code in IE.\n\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n *************************************************************\n\n -->\n ''' % error_message)",
"metadata": "root.ServerHandler.showErrorPage",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 298
},
{
"content": " def showDecidePage(self, request):\n id_url_base = self.server.base_url+'id/'\n # XXX: This may break if there are any synonyms for id_url_base,\n # such as referring to it by IP address or a CNAME.\n assert (request.identity.startswith(id_url_base) or \n request.idSelect()), repr((request.identity, id_url_base))\n expected_user = request.identity[len(id_url_base):]\n\n if request.idSelect(): # We are being asked to select an ID\n msg = '''\\\n <p>A site has asked for your identity. You may select an\n identifier by which you would like this site to know you.\n On a production site this would likely be a drop down list\n of pre-created accounts or have the facility to generate\n a random anonymous identifier.\n </p>\n '''\n fdata = {\n 'id_url_base': id_url_base,\n 'trust_root': request.trust_root,\n }\n form = '''\\\n <form method=\"POST\" action=\"/allow\">\n <table>\n <tr><td>Identity:</td>\n <td>%(id_url_base)s<input type='text' name='identifier'></td></tr>\n <tr><td>Trust Root:</td><td>%(trust_root)s</td></tr>\n </table>\n <p>Allow this authentication to proceed?</p>\n <input type=\"checkbox\" id=\"remember\" name=\"remember\" value=\"yes\"\n /><label for=\"remember\">Remember this\n decision</label><br />\n <input type=\"submit\" name=\"yes\" value=\"yes\" />\n <input type=\"submit\" name=\"no\" value=\"no\" />\n </form>\n '''%fdata\n elif expected_user == self.user:\n msg = '''\\\n <p>A new site has asked to confirm your identity. If you\n approve, the site represented by the trust root below will\n be told that you control identity URL listed below. (If\n you are using a delegated identity, the site will take\n care of reversing the delegation on its own.)</p>'''\n\n fdata = {\n 'identity': request.identity,\n 'trust_root': request.trust_root,\n }\n form = '''\\\n <table>\n <tr><td>Identity:</td><td>%(identity)s</td></tr>\n <tr><td>Trust Root:</td><td>%(trust_root)s</td></tr>\n </table>\n <p>Allow this authentication to proceed?</p>\n <form method=\"POST\" action=\"/allow\">\n <input type=\"checkbox\" id=\"remember\" name=\"remember\" value=\"yes\"\n /><label for=\"remember\">Remember this\n decision</label><br />\n <input type=\"submit\" name=\"yes\" value=\"yes\" />\n <input type=\"submit\" name=\"no\" value=\"no\" />\n </form>''' % fdata\n else:\n mdata = {\n 'expected_user': expected_user,\n 'user': self.user,\n }\n msg = '''\\\n <p>A site has asked for an identity belonging to\n %(expected_user)s, but you are logged in as %(user)s. To\n log in as %(expected_user)s and approve the login request,\n hit OK below. The \"Remember this decision\" checkbox\n applies only to the trust root decision.</p>''' % mdata\n\n fdata = {\n 'identity': request.identity,\n 'trust_root': request.trust_root,\n 'expected_user': expected_user,\n }\n form = '''\\\n <table>\n <tr><td>Identity:</td><td>%(identity)s</td></tr>\n <tr><td>Trust Root:</td><td>%(trust_root)s</td></tr>\n </table>\n <p>Allow this authentication to proceed?</p>\n <form method=\"POST\" action=\"/allow\">\n <input type=\"checkbox\" id=\"remember\" name=\"remember\" value=\"yes\"\n /><label for=\"remember\">Remember this\n decision</label><br />\n <input type=\"hidden\" name=\"login_as\" value=\"%(expected_user)s\"/>\n <input type=\"submit\" name=\"yes\" value=\"yes\" />\n <input type=\"submit\" name=\"no\" value=\"no\" />\n </form>''' % fdata\n\n self.showPage(200, 'Approve OpenID request?', msg=msg, form=form)",
"metadata": "root.ServerHandler.showDecidePage",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 334
},
{
"content": " def showIdPage(self, path):\n link_tag = '<link rel=\"openid.server\" href=\"%sopenidserver\">' %\\\n self.server.base_url\n yadis_loc_tag = '<meta http-equiv=\"x-xrds-location\" content=\"%s\">'%\\\n (self.server.base_url+'yadis/'+path[4:])\n disco_tags = link_tag + yadis_loc_tag\n ident = self.server.base_url + path[1:]\n\n approved_trust_roots = []\n for (aident, trust_root) in self.server.approved.keys():\n if aident == ident:\n trs = '<li><tt>%s</tt></li>\\n' % cgi.escape(trust_root)\n approved_trust_roots.append(trs)\n\n if approved_trust_roots:\n prepend = '<p>Approved trust roots:</p>\\n<ul>\\n'\n approved_trust_roots.insert(0, prepend)\n approved_trust_roots.append('</ul>\\n')\n msg = ''.join(approved_trust_roots)\n else:\n msg = ''\n\n self.showPage(200, 'An Identity Page', head_extras=disco_tags, msg='''\\\n <p>This is an identity page for %s.</p>\n %s\n ''' % (ident, msg))",
"metadata": "root.ServerHandler.showIdPage",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 429
},
{
"content": " def showYadis(self, user):\n self.send_response(200)\n self.send_header('Content-type', 'application/xrds+xml')\n self.end_headers()\n\n endpoint_url = self.server.base_url + 'openidserver'\n user_url = self.server.base_url + 'id/' + user\n self.wfile.write(\"\"\"\\\n<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<xrds:XRDS\n xmlns:xrds=\"xri://$xrds\"\n xmlns=\"xri://$xrd*($v*2.0)\">\n <XRD>\n\n <Service priority=\"0\">\n <Type>%s</Type>\n <Type>%s</Type>\n <URI>%s</URI>\n <LocalID>%s</LocalID>\n </Service>\n\n </XRD>\n</xrds:XRDS>\n\"\"\"%(discover.OPENID_2_0_TYPE, discover.OPENID_1_0_TYPE,\n endpoint_url, user_url))",
"metadata": "root.ServerHandler.showYadis",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 456
},
{
"content": " def showServerYadis(self):\n self.send_response(200)\n self.send_header('Content-type', 'application/xrds+xml')\n self.end_headers()\n\n endpoint_url = self.server.base_url + 'openidserver'\n self.wfile.write(\"\"\"\\\n<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<xrds:XRDS\n xmlns:xrds=\"xri://$xrds\"\n xmlns=\"xri://$xrd*($v*2.0)\">\n <XRD>\n\n <Service priority=\"0\">\n <Type>%s</Type>\n <URI>%s</URI>\n </Service>\n\n </XRD>\n</xrds:XRDS>\n\"\"\"%(discover.OPENID_IDP_2_0_TYPE, endpoint_url,))",
"metadata": "root.ServerHandler.showServerYadis",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 482
},
{
"content": " def showMainPage(self):\n yadis_tag = '<meta http-equiv=\"x-xrds-location\" content=\"%s\">'%\\\n (self.server.base_url + 'serveryadis')\n if self.user:\n openid_url = self.server.base_url + 'id/' + self.user\n user_message = \"\"\"\\\n <p>You are logged in as %s. Your OpenID identity URL is\n <tt><a href=%s>%s</a></tt>. Enter that URL at an OpenID\n consumer to test this server.</p>\n \"\"\" % (self.user, quoteattr(openid_url), openid_url)\n else:\n user_message = \"\"\"\\\n <p>This server uses a cookie to remember who you are in\n order to simulate a standard Web user experience. You are\n not <a href='/login'>logged in</a>.</p>\"\"\"\n\n self.showPage(200, 'Main Page', head_extras = yadis_tag, msg='''\\\n <p>This is a simple OpenID server implemented using the <a\n href=\"http://openid.schtuff.com/\">Python OpenID\n library</a>.</p>\n\n %s\n\n <p>To use this server with a consumer, the consumer must be\n able to fetch HTTP pages from this web server. If this\n computer is behind a firewall, you will not be able to use\n OpenID consumers outside of the firewall with it.</p>\n\n <p>The URL for this server is <a href=%s><tt>%s</tt></a>.</p>\n ''' % (user_message, quoteattr(self.server.base_url), self.server.base_url))",
"metadata": "root.ServerHandler.showMainPage",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 504
},
{
"content": " def showLoginPage(self, success_to, fail_to):\n self.showPage(200, 'Login Page', form='''\\\n <h2>Login</h2>\n <p>You may log in with any name. This server does not use\n passwords because it is just a sample of how to use the OpenID\n library.</p>\n <form method=\"GET\" action=\"/loginsubmit\">\n <input type=\"hidden\" name=\"success_to\" value=\"%s\" />\n <input type=\"hidden\" name=\"fail_to\" value=\"%s\" />\n <input type=\"text\" name=\"user\" value=\"\" />\n <input type=\"submit\" name=\"submit\" value=\"Log In\" />\n <input type=\"submit\" name=\"cancel\" value=\"Cancel\" />\n </form>\n ''' % (success_to, fail_to))",
"metadata": "root.ServerHandler.showLoginPage",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 535
},
{
"content": " def showPage(self, response_code, title,\n head_extras='', msg=None, err=None, form=None):\n\n if self.user is None:\n user_link = '<a href=\"/login\">not logged in</a>.'\n else:\n user_link = 'logged in as <a href=\"/id/%s\">%s</a>.<br /><a href=\"/loginsubmit?submit=true&success_to=/login\">Log out</a>' % \\\n (self.user, self.user)\n\n body = ''\n\n if err is not None:\n body += '''\\\n <div class=\"error\">\n %s\n </div>\n ''' % err\n\n if msg is not None:\n body += '''\\\n <div class=\"message\">\n %s\n </div>\n ''' % msg\n\n if form is not None:\n body += '''\\\n <div class=\"form\">\n %s\n </div>\n ''' % form\n\n contents = {\n 'title': 'Python OpenID Server Example - ' + title,\n 'head_extras': head_extras,\n 'body': body,\n 'user_link': user_link,\n }\n\n self.send_response(response_code)\n self.writeUserHeader()\n self.send_header('Content-type', 'text/html')\n self.end_headers()\n\n self.wfile.write('''<html>\n <head>\n <title>%(title)s</title>\n %(head_extras)s\n </head>\n <style type=\"text/css\">\n h1 a:link {\n color: black;\n text-decoration: none;\n }\n h1 a:visited {\n color: black;\n text-decoration: none;\n }\n h1 a:hover {\n text-decoration: underline;\n }\n body {\n font-family: verdana,sans-serif;\n width: 50em;\n margin: 1em;\n }\n div {\n padding: .5em;\n }\n table {\n margin: none;\n padding: none;\n }\n .banner {\n padding: none 1em 1em 1em;\n width: 100%%;\n }\n .leftbanner {\n text-align: left;\n }\n .rightbanner {\n text-align: right;\n font-size: smaller;\n }\n .error {\n border: 1px solid #ff0000;\n background: #ffaaaa;\n margin: .5em;\n }\n .message {\n border: 1px solid #2233ff;\n background: #eeeeff;\n margin: .5em;\n }\n .form {\n border: 1px solid #777777;\n background: #ddddcc;\n margin: .5em;\n margin-top: 1em;\n padding-bottom: 0em;\n }\n dd {\n margin-bottom: 0.5em;\n }\n </style>\n <body>\n <table class=\"banner\">\n <tr>\n <td class=\"leftbanner\">\n <h1><a href=\"/\">Python OpenID Server Example</a></h1>\n </td>\n <td class=\"rightbanner\">\n You are %(user_link)s\n </td>\n </tr>\n </table>\n%(body)s\n </body>\n</html>\n''' % contents)",
"metadata": "root.ServerHandler.showPage",
"header": "['class', 'ServerHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']",
"index": 550
},
{
"content": "def main(host, port, data_path):\n addr = (host, port)\n httpserver = OpenIDHTTPServer(addr, ServerHandler)\n\n # Instantiate OpenID consumer store and OpenID consumer. If you\n # were connecting to a database, you would create the database\n # connection and instantiate an appropriate store here.\n store = FileOpenIDStore(data_path)\n oidserver = server.Server(store, httpserver.base_url + 'openidserver')\n\n httpserver.setOpenIDServer(oidserver)\n\n print 'Server running at:'\n print httpserver.base_url\n httpserver.serve_forever()",
"metadata": "root.main",
"header": "['module', '___EOS___']",
"index": 672
}
]
| [
{
"span": "import openid",
"start_line": 18,
"start_column": 4,
"end_line": 18,
"end_column": 17
}
]
| []
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Unnecessary pass | NeuroVault/NeuroVault/scripts/add_pearson_similarity_metric.py | [
{
"content": "'''\nCreated on 30 Jan 2015\n\n@author: vsochat\n'''\nimport os\nimport django\nos.environ.setdefault(\"DJANGO_SETTINGS_MODULE\", \"neurovault.settings\")\ndjango.setup()\n\nfrom neurovault.apps.statmaps.models import Similarity, Comparison, Image\nfrom neurovault.apps.statmaps.tasks import save_voxelwise_pearson_similarity\nfrom django.db import IntegrityError\nimport errno\n\n# First create the image similarity metric\npearson_metric = Similarity(similarity_metric=\"pearson product-moment correlation coefficient\",\n transformation=\"voxelwise\",\n metric_ontology_iri=\"http://webprotege.stanford.edu/RCS8W76v1MfdvskPLiOdPaA\",\n transformation_ontology_iri=\"http://webprotege.stanford.edu/R87C6eFjEftkceScn1GblDL\")\ntry:\n pearson_metric.save()\nexcept IntegrityError as exc:\n print \"A Similarity Metric has already been defined for %s\" %(pearson_metric)\n pass \n\n# Now, we need to generate a \"comparison\" object for all files in the database\n# We will use a celery task (as this will be integrated into upload workflow)\nfor image1 in Image.objects.filter(collection__private=False):\n for image2 in Image.objects.filter(collection__private=False):\n if image1.pk < image2.pk:\n print \"Calculating pearson similarity for images %s and %s\" %(image1,image2)\n save_voxelwise_pearson_similarity(image1.pk,image2.pk)\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
}
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{
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{
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"content": "# -*- coding: utf-8 -*-\n#\n# Piped documentation build configuration file, created by\n# sphinx-quickstart on Wed Apr 6 17:38:11 2011.\n#\n# This file is execfile()d with the current directory set to its containing dir.\n#\n# Note that not all possible configuration values are present in this\n# autogenerated file.\n#\n# All configuration values have a default; values that are commented out\n# serve to show the default.\n\nimport sys, os\n\n# If extensions (or modules to document with autodoc) are in another directory,\n# add these directories to sys.path here. If the directory is relative to the\n# documentation root, use os.path.abspath to make it absolute, like shown here.\n#sys.path.insert(0, os.path.abspath('.'))\n\n# -- General configuration -----------------------------------------------------\n\n# If your documentation needs a minimal Sphinx version, state it here.\n#needs_sphinx = '1.0'\n\n# Add any Sphinx extension module names here, as strings. 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Unused local variable | saltstack/salt/salt/states/drac.py | [
{
"content": "def network(ip, netmask, gateway):\n '''\n Ensure the DRAC network settings are consistent\n '''\n ret = {'name': ip,\n 'result': True,\n 'changes': {},\n 'comment': ''}\n\n current_network = __salt__['drac.network_info']()\n new_network = {}\n\n if ip != current_network['IPv4 settings']['IP Address']:\n ret['changes'].update({'IP Address':\n {'Old': current_network['IPv4 settings']['IP Address'],\n 'New': ip}})\n\n if netmask != current_network['IPv4 settings']['Subnet Mask']:\n ret['changes'].update({'Netmask':\n {'Old': current_network['IPv4 settings']['Subnet Mask'],\n 'New': netmask}})\n\n if gateway != current_network['IPv4 settings']['Gateway']:\n ret['changes'].update({'Gateway':\n {'Old': current_network['IPv4 settings']['Gateway'],\n 'New': gateway}})\n\n if __opts__['test']:\n ret['result'] = None\n return ret\n\n if __salt__['drac.set_network'](ip, netmask, gateway):\n if not ret['changes']:\n ret['comment'] = 'Network is in the desired state'\n\n return ret\n\n ret['result'] = False\n ret['comment'] = 'unable to configure network'\n\n return ret",
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Unused import | elmar-hinz/Python.Vii/tests/Cursor_Test.py | [
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"content": " def countOfLines(self):\n return len(self.text)",
"metadata": "root.BufferMock.countOfLines",
"header": "['class', 'BufferMock', ':', '___EOS___']",
"index": 17
},
{
"content": "class MotionsMock:\n",
"metadata": "root.MotionsMock",
"header": "['module', '___EOS___']",
"index": 23
},
{
"content": " def gotoPositionStrict(self, position):\n self.targetPosition = position\n if position == Position(1,1):\n \" test_delete_all_lines() \"\n return Range((0,0), (0,0))\n else:\n \" other tests \"\n return Range((1,1), (1,1))",
"metadata": "root.MotionsMock.gotoPositionStrict",
"header": "['class', 'MotionsMock', ':', '___EOS___']",
"index": 25
},
{
"content": "class Cursor_Test:\n\n\n\n\n\n\n \"\"\" Track insertions \"\"\"\n\n\n\n\n\n\n \"\"\" Track deletions \"\"\"\n\n\n\n\n\n\n\n",
"metadata": "root.Cursor_Test",
"header": "['module', '___EOS___']",
"index": 34
},
{
"content": " def setup(self):\n self.buffer = BufferMock()\n self.motions = MotionsMock()\n self.fixture = Cursor()\n self.fixture.x = 1\n self.fixture.y = 1\n self.fixture.buffer = self.buffer\n self.fixture.motions = self.motions\n slot(\"cursorMoved\", self)\n self.cursorMoved = False",
"metadata": "root.Cursor_Test.setup",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 36
},
{
"content": " def receive(self, signal, sender):\n if signal == \"cursorMoved\":\n if sender == self.fixture:\n self.cursorMoved = True",
"metadata": "root.Cursor_Test.receive",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 47
},
{
"content": " def test_init(self):\n assert self.fixture.__class__ == Cursor\n assert self.fixture.buffer == self.buffer\n assert self.fixture.motions == self.motions\n assert self.fixture.x == 1\n assert self.fixture.y == 1",
"metadata": "root.Cursor_Test.test_init",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 52
},
{
"content": " def test_update(self):\n self.fixture.updated()\n assert self.cursorMoved\n # TODO test execptions",
"metadata": "root.Cursor_Test.test_update",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 59
},
{
"content": " def test_position(self):\n assert self.fixture.position() == Position(1,1)\n assert not self.cursorMoved\n self.fixture.position(Position(2,3))\n assert self.fixture.position() == Position(2,3)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_position",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 64
},
{
"content": " def test_insert_vertically_after_cursor(self):\n \"\"\" cursor is fix \"\"\"\n signal(\"insertedIntoBuffer\", self.buffer,\n startPosition = Position(2,1),\n afterPosition = Position(3,1))\n assert self.fixture.position() == Position(1,1)\n assert not self.cursorMoved",
"metadata": "root.Cursor_Test.test_insert_vertically_after_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 73
},
{
"content": " def test_insert_horizontally_after_cursor(self):\n \"\"\" cursor is fix \"\"\"\n signal(\"insertedIntoBuffer\", self.buffer,\n startPosition = Position(1,2),\n afterPosition = Position(1,3))\n assert self.fixture.position() == Position(1,1)\n assert not self.cursorMoved",
"metadata": "root.Cursor_Test.test_insert_horizontally_after_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 81
},
{
"content": " def test_insert_vertically_before_cursor(self):\n \"\"\" cursor moves down \"\"\"\n self.fixture.position(Position(3, 2))\n text = \"line one\\naa\\nbb\\nline two\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"insertedIntoBuffer\", self.buffer,\n startPosition = Position(2,1),\n afterPosition = Position(4,1))\n assert self.fixture.position() == Position(5,2)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_insert_vertically_before_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 89
},
{
"content": " def test_insert_horizontally_before_cursor(self):\n \"\"\" cursor moves right \"\"\"\n self.fixture.position(Position(2, 4))\n text = \"line one\\nlxxxine two\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"insertedIntoBuffer\", self.buffer,\n startPosition = Position(2,2),\n afterPosition = Position(2,5))\n assert self.fixture.position() == Position(2, 7)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_insert_horizontally_before_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 100
},
{
"content": " def test_insert_before_cursor(self):\n \"\"\" cursor moves in both dimensions \"\"\"\n self.fixture.position(Position(2, 8))\n text = \"line one\\nline xxx\\n\\nytwo\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"insertedIntoBuffer\", self.buffer,\n startPosition = Position(2,6),\n afterPosition = Position(4,2))\n assert self.fixture.position() == Position(4, 4)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_insert_before_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 111
},
{
"content": " def test_delete_vertically_after_cursor(self):\n \"\"\" cursor is fix \"\"\"\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(2,1),\n startPosition = Position(3,1))\n assert self.fixture.position() == Position(1,1)\n assert not self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_vertically_after_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 124
},
{
"content": " def test_delete_horizontally_after_cursor(self):\n \"\"\" cursor is fix \"\"\"\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(1,2),\n startPosition = Position(1,3))\n assert self.fixture.position() == Position(1,1)\n assert not self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_horizontally_after_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 132
},
{
"content": " def test_delete_vertically_before_cursor(self):\n \"\"\" cursor moves up \"\"\"\n text = \"line one\\naa\\nbb\\nline two\\nline three\\n\".splitlines()\n self.buffer.text = text\n self.fixture.position(Position(5, 2))\n text = \"line one\\nline two\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(2,1),\n startPosition = Position(4,1))\n assert self.fixture.position() == Position(3,2)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_vertically_before_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 140
},
{
"content": " def test_delete_horizontally_before_cursor(self):\n \"\"\" cursor moves left \"\"\"\n text = \"line one\\nlxxxine two\\nline three\\n\".splitlines()\n self.buffer.text = text\n self.fixture.position(Position(2, 7))\n text = \"line one\\nline two\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(2,2),\n startPosition = Position(2,5))\n assert self.fixture.position() == Position(2, 4)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_horizontally_before_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 153
},
{
"content": " def test_delete_before_cursor(self):\n \"\"\" cursor moves in both dimensions \"\"\"\n text = \"line one\\nline xxx\\n\\nytwo\\nline three\\n\".splitlines()\n self.buffer.text = text\n self.fixture.position(Position(4, 4))\n text = \"line one\\nline two\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(2,6),\n startPosition = Position(4,2))\n assert self.fixture.position() == Position(2, 8)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_before_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 166
},
{
"content": " def test_delete_around_cursor(self):\n \" cursor moves in both dimensions \"\n text = \"line one\\nline xxx\\nyyy\\nzzz two\\nline three\\n\".splitlines()\n self.buffer.text = text\n self.fixture.position(Position(3, 2))\n text = \"line one\\nline two\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(2,6),\n startPosition = Position(4,5))\n assert self.motions.targetPosition == Position(2,6)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_around_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 179
},
{
"content": " def test_delete_last_lines_with_cursor(self):\n \" cursor moves to beginning of last line \"\n text = \"line one\\nline two\\nline three\\n44\\n55\\n\".splitlines()\n self.buffer.text = text\n self.fixture.position(Position(5, 2))\n text = \"line one\\nline two\\nline three\\n\".splitlines()\n self.buffer.text = text\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(4,1),\n startPosition = Position(5,3))\n assert self.motions.targetPosition == Position(4,1)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_last_lines_with_cursor",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 192
},
{
"content": " def test_delete_all_lines(self):\n \" cursor moves to 0, 0 \"\n self.fixture.position(Position(2, 2))\n self.buffer.text = []\n signal(\"deletedFromBuffer\", self.buffer,\n afterPosition = Position(1, 1),\n startPosition = Position(4, 1))\n assert self.motions.targetPosition == Position(1,1)\n assert self.fixture.position() == Position(0,0)\n assert self.cursorMoved",
"metadata": "root.Cursor_Test.test_delete_all_lines",
"header": "['class', 'Cursor_Test', ':', '___EOS___']",
"index": 205
}
]
| [
{
"span": "from nose.plugins.skip import SkipTest",
"start_line": 1,
"start_column": 0,
"end_line": 1,
"end_column": 38
}
]
| []
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Unused import | apache/climate/obs4MIPs/Toolbox/ESGFresources.py | [
{
"content": "# Licensed to the Apache Software Foundation (ASF) under one\n# or more contributor license agreements. See the NOTICE file\n# distributed with this work for additional information\n# regarding copyright ownership. The ASF licenses this file\n# to you under the Apache License, Version 2.0 (the\n# \"License\"); you may not use this file except in compliance\n# with the License. You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing,\n# software distributed under the License is distributed on an\n# \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY\n# KIND, either express or implied. See the License for the\n# specific language governing permissions and limitations\n# under the License.\n\n\nimport pdb\nimport shutil\nimport os,sys\nfrom numpy import arange\nfrom Toolbox.CMORresources import CMORAttributes\n\n# ********************************************************************\n# ESGFresources()\n#\n# ********************************************************************\n\n\n# ********************************************************************\n# movefiles() \n#\n# rename files in new obs4MIPS path\n# ********************************************************************\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
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},
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"content": "class ESGFresources:\n '''\n Create dictionary based on a file using key=value standard \n '''\n\n\n\n",
"metadata": "root.ESGFresources",
"header": "['module', '___EOS___']",
"index": 28
},
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"content": " def __init__(self,rcFile):\n '''\n Read CMIP5 Table and convert into a dictionary\n strip quote double quote, leading and trailing white space\n from key and value.\n '''\n f=open( rcFile, 'r')\n lines=f.readlines()\n f.close()\n\n self.resources=dict([(key.strip(), value.strip(),) \n for line in lines if line != '\\n' \\\n and line[0] != \"#\" \n for (key, value) in\n [line.strip().\\\n replace(\"'\",\"\").\\\n replace(\"\\\"\",\"\").\\\n rstrip().\\\n split(\"=\")]])\n\n for key in self.resources.keys():\n self.resources[key]=self.resources[key].replace(\"\\\\\",\"\\\"\")\n \n self.xcl=None\n try:\n self.xcl=self.resources['excel_file']\n rc=self.ReadXCL()\n except:\n pass",
"metadata": "root.ESGFresources.__init__",
"header": "['class', 'ESGFresources', ':', '___EOS___']",
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},
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"content": " def __getitem__(self,key):\n '''\n Retreive item from resource dictionary\n '''\n return self.resources[key]",
"metadata": "root.ESGFresources.__getitem__",
"header": "['class', 'ESGFresources', ':', '___EOS___']",
"index": 62
},
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"content": " def __setitem__(self,key,value):\n '''\n '''\n self.resources[key]=value",
"metadata": "root.ESGFresources.__setitem__",
"header": "['class', 'ESGFresources', ':', '___EOS___']",
"index": 68
},
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"content": " def __delete__(self,key):\n '''\n '''\n del self.resources[key]",
"metadata": "root.ESGFresources.__delete__",
"header": "['class', 'ESGFresources', ':', '___EOS___']",
"index": 73
},
{
"content": " def ReadXCL(self):\n '''\n Read Excel Table and fill rc variable related field.\n '''\n try:\n import xlrd\n except:\n print \"****** Could not find xlrd Python Package ****\"\n print \"****** Please install xlrd package to read excel files ****\"\n\n if( os.path.isfile(self.xcl) ):\n\t\twb=xlrd.open_workbook(self.xcl)\n else:\n print \"****** Could not find \"+self.xcl+\" file ****\"\n print \"****** Please check excel file name ****\"\n raise NameError(self.xcl)\n\n sheet=wb.sheet_by_name('Variables')\n\n self.resources['cmor_var'] = [ sheet.row( i )[ 0 ].value.\\\n encode('ascii','ignore') \\\n for i in arange(sheet.nrows-2) + 2 ]\n\n self.resources['original_var'] = [ sheet.row( i )[ 1 ].value.\\\n encode('ascii','ignore') \\\n for i in arange(sheet.nrows-2) + 2 ]\n\n self.resources['original_units']=[ sheet.row( i )[ 2 ].value.\\\n encode('ascii','ignore') \\\n for i in arange(sheet.nrows-2) + 2 ]\n\n self.resources['level'] =[ sheet.row( i )[ 3 ].value.\\\n encode('ascii','ignore') \\\n for i in arange(sheet.nrows-2) + 2]\n \n self.resources['equation'] =[ sheet.row( i )[ 6 ].value.\\\n encode('ascii','ignore') \\\n for i in arange(sheet.nrows-2) + 2 ]\n\n # -----------------------------------------------------------------\n # Make sure it is a string. The main program will call eval on it.\n # -----------------------------------------------------------------\n self.resources['cmor_var'] = str(self.resources['cmor_var'] )\n self.resources['original_var'] = str(self.resources['original_var'])\n self.resources['original_units'] =str(self.resources['original_units'])\n self.resources['equation'] =str(self.resources['equation'])\n self.resources['level'] =str(self.resources['level'])\n return 1",
"metadata": "root.ESGFresources.ReadXCL",
"header": "['class', 'ESGFresources', ':', '___EOS___']",
"index": 78
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"content": "def movefiles(rc): \n '''\n Change CMIP5 directory struture to obs4MIPS directory structure.\n Create new path and rename files following with new convention \n Remove old directory tree.\n '''\n # ----------------------\n # New path for obs4MIPS\n # ----------------------\n path = rc['institute_id' ] + '/' + \\\n rc['instrument' ] + '/' + \\\n rc['project_id' ] + '/' + \\\n rc['product' ] + '/' + \\\n rc['modeling_realm' ] + '/' + \\\n rc['cvrt_cmor_var' ] + '/' + \\\n rc['frequency' ] + '/' + \\\n rc['data_structure' ] + '/' + \\\n rc['institute_id' ] + '/' + \\\n rc['instrument' ] \n \n # -------------------------------------------------------------\n # For TRMM data set version_directory is set to 'false' so that\n # no version will be created in the directory\n # -------------------------------------------------------------\n try:\n rc['version_directory'] == 'false'\n pass\n except:\n path += '/V' + rc['processing_version'] + '/'\n\n # -----------------------------\n # Make sure the directory exist \n # ------------------------------\n try:\n os.makedirs(path)\n except:\n None\n\n # -----------------\n # Rename all files\n # -----------------\n cmorpath = rc['project_id' ] + '/' + \\\n rc['product' ] + '/' + \\\n rc['institute_id'] + '/' \n\n # -----------------\n # Manage attributes\n # -----------------\n for r,d,f in os.walk(cmorpath):\n for files in f:\n if files.endswith(\".nc\"):\n filetimestamp = files.split('_')[-1].strip(\".nc\")\n file = os.path.join(r,files)\n print file\n # -----------------\n # Delete attributes\n # ------------------\n Attr=CMORAttributes( file )\n DelGlbAttributes=eval(rc['DelGlbAttributes'].\\\n replace('\\\\','\\''))\n for attribute in DelGlbAttributes:\n print \"Deleting attribute: %s\" % attribute\n Attr.GlbDel(attribute)\n # -----------------\n # set attributes\n # ------------------\n SetGlbAttributes=eval(rc['SetGlbAttributes'].\\\n replace('\\\\','\\''))\n for (attribute,Value) in SetGlbAttributes:\n print \"Assigning attribute (%s,%s)\" % (attribute,Value)\n Attr.GlbSet(attribute,Value)\n Attr.close()\n\n source = ''\n if( rc['source_fn'] == 'SYNOPTIC' ):\n source = rc['SYNOPTIC']+\"z_\"\n elif( rc['source_fn'] != '' ):\n source = rc['source_fn'].split('_')[0] + '_'\n \n newfilename = rc['cvrt_cmor_var' ] + '_' + \\\n rc['instrument' ] + '-' + \\\n source + \\\n rc['processing_level' ] + '_v'+ \\\n rc['processing_version'] + '_' + \\\n filetimestamp + '.nc'\n \n newfilename = os.path.join(path,newfilename)\n # -----------\n # Move files\n # -----------\n print file\n print newfilename\n os.rename(file,newfilename)\n\n \n # ----------------\n # Remove cmor path\n # ----------------\n shutil.rmtree( rc['project_id'] )\n return 0",
"metadata": "root.movefiles",
"header": "['module', '___EOS___']",
"index": 133
}
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"content": " def setUp(self):\n self.filepath = None\n f, self.filepath = tempfile.mkstemp()\n os.unlink(self.filepath)\n self._env = os.environ\n print \"hej\"",
"metadata": "root.TestBase.setUp",
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|
Unused import | nasa/CrisisMappingToolkit/cmt/radar/learning.py | [
{
"content": "# -----------------------------------------------------------------------------\n# Copyright * 2014, United States Government, as represented by the\n# Administrator of the National Aeronautics and Space Administration. All\n# rights reserved.\n#\n# The Crisis Mapping Toolkit (CMT) v1 platform is licensed under the Apache\n# License, Version 2.0 (the \"License\"); you may not use this file except in\n# compliance with the License. You may obtain a copy of the License at\n# http://www.apache.org/licenses/LICENSE-2.0.\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT\n# WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the\n# License for the specific language governing permissions and limitations under\n# the License.\n# -----------------------------------------------------------------------------\n\nimport ee\nfrom cmt.mapclient_qt import centerMap, addToMap\n\nfrom histogram import RadarHistogram\n\n\n'''\nUse Earth Engine's classifier tool for water detection.\n'''\n\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "def __learning_threshold(domain, algorithm):\n \n training_domain = None\n if domain.training_domain:\n training_domain = domain.training_domain\n elif domain.unflooded_domain:\n training_domain = domain.unflooded_domain\n if not training_domain:\n raise Exception('Cannot use learning algorithms without a training image defined by the domain!')\n classifier = ee.apply('TrainClassifier', {'image': training_domain.get_radar().image,\n 'subsampling' : 0.07,\n 'training_image' : training_domain.ground_truth,\n 'training_band' : 'b1',\n 'training_region' : training_domain.bounds,\n 'max_classification': 2,\n 'classifier_name' : algorithm})\n classified = ee.call('ClassifyImage', domain.get_radar().image, classifier).select(['classification'], ['b1']);\n return classified;",
"metadata": "root.__learning_threshold",
"header": "['module', '___EOS___']",
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"content": "def decision_tree(domain):\n '''Use \"Cart\" method: Classification and Regression Tree'''\n return __learning_threshold(domain, 'Cart')",
"metadata": "root.decision_tree",
"header": "['module', '___EOS___']",
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},
{
"content": "def random_forests(domain):\n '''Use \"RifleSerialClassifier\" method: A Random Forest technique'''\n return __learning_threshold(domain, 'RifleSerialClassifier')",
"metadata": "root.random_forests",
"header": "['module', '___EOS___']",
"index": 49
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"content": "def svm(domain):\n '''Use \"Pegasos\" method: Primal Estimated sub-GrAdient SOlver for SVM'''\n return __learning_threshold(domain, 'Pegasos')",
"metadata": "root.svm",
"header": "['module', '___EOS___']",
"index": 52
}
]
| [
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"span": "from cmt.mapclient_qt import centerMap, addToMap",
"start_line": 18,
"start_column": 0,
"end_line": 18,
"end_column": 48
},
{
"span": "from histogram import RadarHistogram",
"start_line": 20,
"start_column": 0,
"end_line": 20,
"end_column": 36
}
]
| []
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"content": "# coding=utf-8\n#\n# Copyright © 2015 VMware, Inc. All Rights Reserved.\n#\n# Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated\n# documentation files (the \"Software\"), to deal in the Software without restriction, including without limitation\n# the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and\n# to permit persons to whom the Software is furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included in all copies or substantial portions\n# of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED\n# TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL\n# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF\n# CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS\n# IN THE SOFTWARE.\n\n__author__ = 'yfauser'\n\nfrom tests.config import *\nfrom nsxramlclient.client import NsxClient\nimport time\n\n\nclient_session = NsxClient(nsxraml_file, nsxmanager, nsx_username, nsx_password, debug=True)\n\n#TODO: add tests for all vds operations",
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Unused import | uwdata/termite-visualizations/web2py/gluon/cfs.py | [
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"content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\n\n\"\"\"\nThis file is part of the web2py Web Framework\nCopyrighted by Massimo Di Pierro <[email protected]>\nLicense: LGPLv3 (http://www.gnu.org/licenses/lgpl.html)\n\nFunctions required to execute app components\n============================================\n\nFOR INTERNAL USE ONLY\n\"\"\"\n\nfrom os import stat\nimport thread\nimport logging\nfrom gluon.fileutils import read_file\n\ncfs = {} # for speed-up\ncfs_lock = thread.allocate_lock() # and thread safety\n\n\n",
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"content": "def getcfs(key, filename, filter=None):\n \"\"\"\n Caches the *filtered* file `filename` with `key` until the file is\n modified.\n\n :param key: the cache key\n :param filename: the file to cache\n :param filter: is the function used for filtering. Normally `filename` is a\n .py file and `filter` is a function that bytecode compiles the file.\n In this way the bytecode compiled file is cached. (Default = None)\n\n This is used on Google App Engine since pyc files cannot be saved.\n \"\"\"\n try:\n t = stat(filename).st_mtime\n except OSError:\n return filter() if callable(filter) else ''\n cfs_lock.acquire()\n item = cfs.get(key, None)\n cfs_lock.release()\n if item and item[0] == t:\n return item[1]\n if not callable(filter):\n data = read_file(filename)\n else:\n data = filter()\n cfs_lock.acquire()\n cfs[key] = (t, data)\n cfs_lock.release()\n return data",
"metadata": "root.getcfs",
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Unused import | los-cocos/cocos/utest/test_RectMapCollider__no_stuck.py | [
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"content": "# -*- coding: utf-8 -*-\n\"\"\" Tests that an actor using RectMapCollider does not get stuck\nRun the tests with pytest.\n\nImplementation description\n - The basic situation considered is\n - actor touching wall in one of it sides\n - requested to move a dx, dy that will push against the wall and\n allow free movement in the axis not blocked by the wall\n\n - They are so many small variations in each situation proposed that\n directly writing each test setup would be error prone, so a layered\n case generator approach was selected\n - base cases depict qualitative diferent situations as a\n (map, actor_rect, push, signed free axis vector)\n - for each parametrizable value , a set of values of\n interest is defined\n - code will walk the (base cases, params values) generating the\n concrete cases to validate\n - as an implementation detail, maps will be cached\n\n - params desired to change\n map: the basic form and orientation in the situation\n cell_size, actor_size: mostly\n actor side z <=> cell side z\n actor side odd or even (because .center assings; division_errors?)\n push style: dx, dy\n actor start position: move the start position along the wall to cover\n all int alignements with the grid, ie do offsets 1..cell_width if\n free movement axis is x, ... \n\"\"\"\nfrom __future__ import division, print_function, unicode_literals\n\n# that simplifies the pyglet mockup needed\n# remember to erase or set to zero for normal runs\nimport os\nassert os.environ['cocos_utest']\n\n# set the desired pyglet mockup\nimport sys\nsys.path.insert(0,'pyglet_mockup1')\nimport pyglet\nassert pyglet.mock_level == 1\n \n# will use the cocos in the same checkout, except if you move this file.\nimport sys\nimport os\nsys.path.insert(0, os.path.join(os.path.dirname(__file__), '..'))\n\n# for py.test\nimport py\n\nimport cocos\nimport cocos.layer\nfrom cocos.tiles import RectMap, RectCell, RectMapCollider \nfrom cocos.rect import Rect\n\nimport aux_RectMapCollider__no_stuck as aux\n# set the cocos classes needed in aux before calling any function there\naux.RectMap_cls = RectMap\naux.RectCell = RectCell\naux.Rect = Rect\n\n\nmaps_cache = aux.generate_maps('-')\n \n##def test_smoketest_string_to_RectMap():\n## cells_per_row = 5\n## cells_per_column = 6\n## cell_width = 3\n## cell_height = 5\n## string_map = mapstrings['vertical_w_hole']\n## rect_map = string_to_RectMap(string_map, cell_width, cell_height)\n## cells = rect_map.get_in_region(0, 0,\n## cells_per_row * cell_width,\n## cells_per_column * cell_height)\n## assert len(cells)== cells_per_row * cells_per_column\n## non_empties = set(e for e in cells if e.cell is not None)\n## print(non_empties)\n## # remember rows begin counting from bottom due to openGL origin\n## assert ( set( (e.i, e.j) for e in non_empties ) ==\n## {(2, 0), (2,1), (2, 2), (2, 4), (2, 5) } )\n \n\n \n##class TestClass():\n## params = {\n## 'test_equals': [dict(a=1, b=2), dict(a=3, b=3), dict(a=5, b=4)],\n## 'test_zerodivision': [dict(a=1, b=0), dict(a=3, b=2)],\n## }\n## \n## def test_equals(self, a, b):\n## assert a == b\n## \n## def test_zerodivision(self, a, b):\n## py.test.raises(ZeroDivisionError, \"a/b\")\n##\n##class TestClass2():\n## params = {\n## \"test_concatenation\": [dict(r='a', s='b', res='ab'),\n## dict(r='aa', s='bb', res='aabb')]\n## }\n##\n## def test_concatenation(self, r, s, res):\n## assert r+s+'z' == res\n\nscenario = [ d for d in aux.case_generator(aux.first_expansion(maps_cache, aux.common_base_cases))]\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "def pytest_generate_tests(metafunc):\n # called once per each test function\n for funcargs in metafunc.cls.params[metafunc.function.__name__]:\n # schedule a new test function run with applied **funcargs\n metafunc.addcall(funcargs=funcargs)",
"metadata": "root.pytest_generate_tests",
"header": "['module', '___EOS___']",
"index": 84
},
{
"content": "class TestClass():\n params = {\n 'test_no_stuck': scenario,\n }\n",
"metadata": "root.TestClass",
"header": "['module', '___EOS___']",
"index": 113
},
{
"content": " def test_no_stuck(self, generic_id, tilemap, start_rect, dx, dy, expect_dxdy):\n collider = RectMapCollider()\n new = start_rect.copy()\n new.x += dx\n new.y += dy\n new_dx, new_dy = collider.collide_map(tilemap, start_rect, new, dx, dy)\n assert new.position == (start_rect.x + expect_dxdy[0],\n start_rect.y + expect_dxdy[1])\n # uncomment if changed behavior in RectMapCollider \n assert (new_dx, new_dy) == expect_dxdy",
"metadata": "root.TestClass.test_no_stuck",
"header": "['class', 'TestClass', '(', ')', ':', '___EOS___']",
"index": 118
}
]
| [
{
"span": "import py",
"start_line": 50,
"start_column": 0,
"end_line": 50,
"end_column": 9
},
{
"span": "import cocos",
"start_line": 52,
"start_column": 0,
"end_line": 52,
"end_column": 12
},
{
"span": "import cocos.layer",
"start_line": 53,
"start_column": 0,
"end_line": 53,
"end_column": 18
}
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Unused local variable | anandology/pyjamas/pyjs/src/pyjs/translator_dict.py | [
{
"content": " def node_and_test(self, node, jsbool=False, name=None):\n jsvars = self.jsvars.copy()\n args = []\n childs = node.children.__iter__()\n if jsbool:\n name = None\n elif name is None:\n name = self.get_tmp_jsname('and$')\n self.add_lines(\"var %s\" % name)\n args.append(self.get_test(childs.next(), name))\n try:\n while True:\n self.assert_value(node, childs.next().value, 'and')\n args.append(self.get_test(childs.next(), name))\n except StopIteration:\n pass\n test = ' && '.join(args)\n if jsbool:\n return test\n return '(%s ? %s : %s)' % (test, name, name)",
"metadata": "root.Translator.node_and_test",
"header": "['class', 'Translator', '(', 'object', ')', ':', '___EOS___']",
"index": 1124
},
{
"content": " def node_except_clause(self, node):\n jsvars = self.jsvars.copy()\n childs = node.children.__iter__()\n self.assert_value(node, childs.next().value, 'except')\n classes = None\n varname = None\n try:\n child = childs.next()\n if isinstance(child, Node) and type_repr(child.type) == 'atom':\n self.assert_value(node, child.children[0].value, '(')\n self.assert_value(node, child.children[-1].value, ')')\n classes = self.dispatch(child.children[1])\n else:\n classes = self.dispatch(child)\n self.assert_value(node, childs.next().value, ',')\n varname = self.dispatch(childs.next(), assign=True)\n except StopIteration:\n pass\n if classes is not None:\n if not isinstance(classes, list):\n classes = [classes]\n tests = []\n return classes, varname\n return None, None",
"metadata": "root.Translator.node_except_clause",
"header": "['class', 'Translator', '(', 'object', ')', ':', '___EOS___']",
"index": 1598
},
{
"content": " def node_if_stmt(self, node):\n jsvars = self.jsvars.copy()\n childs = node.children.__iter__()\n try:\n while True:\n stmt = childs.next()\n if stmt.value == 'if':\n test = self.get_test(childs.next())\n test = \"if (%s) {\" % test\n self.add_lines(test, self.track_lineno(stmt))\n elif stmt.value == 'elif':\n test = self.get_test(childs.next())\n test = \"} else if (%s) {\" % test\n self.add_lines(test)\n elif stmt.value == 'else':\n self.add_lines('} else {')\n self.assert_value(node, childs.next().value, ':')\n self.indent()\n self.dispatch(childs.next())\n self.dedent()\n except StopIteration:\n pass\n self.add_lines(\"}\")",
"metadata": "root.Translator.node_if_stmt",
"header": "['class', 'Translator', '(', 'object', ')', ':', '___EOS___']",
"index": 2224
},
{
"content": " def node_or_test(self, node, jsbool=False, name=None):\n jsvars = self.jsvars.copy()\n args = []\n childs = node.children.__iter__()\n if jsbool:\n name = None\n elif name is None:\n name = self.get_tmp_jsname('or$')\n self.add_lines(\"var %s\" % name)\n args.append(self.get_test(childs.next(), name))\n try:\n while True:\n self.assert_value(node, childs.next().value, 'or')\n args.append(self.get_test(childs.next(), name))\n except StopIteration:\n pass\n test = ' || '.join(args)\n if jsbool:\n return test\n return '(%s ? %s : %s)' % (test, name, name)",
"metadata": "root.Translator.node_or_test",
"header": "['class', 'Translator', '(', 'object', ')', ':', '___EOS___']",
"index": 2459
},
{
"content": " def node_test(self, node):\n jsvars = self.jsvars.copy()\n childs = node.children.__iter__()\n left = self.dispatch(childs.next())\n self.assert_value(node, childs.next().value, 'if')\n test = self.get_test(childs.next())\n self.assert_value(node, childs.next().value, 'else')\n right = self.dispatch(childs.next())\n return '%s ? %s : %s' % (test, left, right)",
"metadata": "root.Translator.node_test",
"header": "['class', 'Translator', '(', 'object', ')', ':', '___EOS___']",
"index": 2758
},
{
"content": "def translate(compiler, sources, output_file, module_name=None, **kw):\n global TranslationError\n kw = dict(all_compile_options, **kw)\n list_imports = kw.get('list_imports', False)\n sources = map(os.path.abspath, sources)\n output_file = os.path.abspath(output_file)\n if not module_name:\n module_name, extension = os.path.splitext(os.path.basename(sources[0]))\n\n translator = Translator(sources[0], module_name, kw)\n TranslationError = translator.TranslationError\n trees = []\n tree = None\n for src in sources:\n current_tree = translator.ast_tree_creator(src)\n flags = set()\n f = file(src)\n for l in f:\n if l.startswith('#@PYJS_'):\n flags.add(l.strip()[7:])\n f.close()\n if tree:\n tree = translator.tree_merge(tree, current_tree, flags)\n else:\n tree = current_tree\n #XXX: if we have an override the sourcefile and the tree is not the same!\n f = file(sources[0], \"r\")\n src = f.read()\n f.close()\n if list_imports:\n # TODO: use ImportVisitor instead of Translator\n translator.dispatch_file(tree)\n return translator.imported_modules.keys(), translator.imported_js.keys()\n v = ImportVisitor(module_name)\n compiler.walk(tree, v)\n return v.imported_modules, v.imported_js\n\n translator.dispatch_file(tree)\n\n if output_file == '-':\n output = sys.stdout\n else:\n output = file(output_file, 'w')\n output.write(translator.get_javascript())\n output.close()\n return sorted(translator.imported_modules.keys()), sorted(translator.imported_js.keys())",
"metadata": "root.translate",
"header": "['module', '___EOS___']",
"index": 3141
},
{
"content": " def visitFrom(self, node):\n if node.modname == '__pyjamas__':\n return\n if node.modname == '__javascript__':\n return\n # XXX: hack for in-function checking, we should have another\n # object to check our scope\n absPath = False\n modname = node.modname\n if hasattr(node, 'level') and node.level > 0:\n absPath = True\n modname = self.module_name.split('.')\n level = node.level\n if len(modname) < level:\n raise TranslationError(\n \"Attempted relative import beyond toplevel package\",\n node, self.module_name)\n if node.modname != '':\n level += 1\n if level > 1:\n modname = '.'.join(modname[:-(node.level-1)])\n else:\n modname = self.module_name\n if node.modname != '':\n modname += '.' + node.modname\n if modname[0] == '.':\n modname = modname[1:]\n for name in node.names:\n sub = modname + '.' + name[0]\n ass_name = name[1] or name[0]\n self._doImport(((sub, ass_name),))",
"metadata": "root.ImportVisitor.visitFrom",
"header": "['class', 'ImportVisitor', '(', 'object', ')', ':', '___EOS___']",
"index": 3217
}
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Except block handles 'BaseException' | rawdigits/bouncer/example/redis-loaders/host.py | [
{
"content": "def process_data(data):\n global metric\n #print data\n if data['type'] == 'request':\n time = ((data['time']/1000)/granularity)*granularity\n TIME_LENGTH=10\n\n try:\n metric[\"%s-%s\" % (time, data['host'])] += 1\n except:\n metric[\"%s-%s\" % (time, data['host'])] = 1\n\n if b.check():\n #using slices in these because it seems faster..\n for k,v in metric.items():\n time, host = k[0:10], k[11:]\n r.zincrby(time+\"-hosts\", host, v)\n\n metric.clear()",
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|
Imprecise assert | crossbario/autobahn-python/autobahn/wamp/test/test_auth.py | [
{
"content": " def test_compute_totp(self):\n pat = re.compile(u\"\\d{6}\")\n secret = u\"MFRGGZDFMZTWQ2LK\"\n signature = auth.compute_totp(secret)\n self.assertEqual(type(signature), six.text_type)\n self.assertTrue(pat.match(signature) is not None)",
"metadata": "root.TestWampAuthHelpers.test_compute_totp",
"header": "['class', 'TestWampAuthHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
"index": 90
},
{
"content": " def test_compute_totp_offset(self):\n pat = re.compile(u\"\\d{6}\")\n secret = u\"MFRGGZDFMZTWQ2LK\"\n for offset in range(-10, 10):\n signature = auth.compute_totp(secret, offset)\n self.assertEqual(type(signature), six.text_type)\n self.assertTrue(pat.match(signature) is not None)",
"metadata": "root.TestWampAuthHelpers.test_compute_totp_offset",
"header": "['class', 'TestWampAuthHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']",
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Unused import | cigroup-ol/windml/examples_alt/prediction/svr_response_curve.py | [
{
"content": "\"\"\"\nResponse Curve of a Turbine\n--------------------------------------------------\n\nThe response curve is the mapping from wind speed to wind power production. In\nthis example the response curve is learned via support vector regression.\n\"\"\"\n\n# Author: Nils A. Treiber <[email protected]>\n# License: BSD 3 clause\n\nfrom matplotlib import dates\nimport matplotlib.pylab as plt\nimport datetime, time\nimport numpy as np\n\nfrom numpy import array, matrix\nfrom sklearn.grid_search import GridSearchCV\nfrom sklearn.cross_validation import KFold\nfrom sklearn import __version__ as sklearn_version\nfrom sklearn.svm import SVR\n\nfrom sklearn.neighbors import KNeighborsRegressor\nfrom windml.datasets.nrel import NREL\nfrom windml.visualization.plot_response_curve import plot_response_curve\n\n\nds = NREL()\nturbine = ds.get_turbine(NREL.park_id['palmsprings'], 2004, 2006)\ntimeseries = turbine.get_measurements()\nmax_speed = 40\nskip = 1\n\n\n# plot true values as blue points\nspeed = [m[2] for m in timeseries[::skip]]\nscore = [m[1] for m in timeseries[::skip]]\n\n\n# Second Plot: KNN-Interpolation\n# Built patterns und labels\nX_train = speed[0:len(speed):1]\nY_train = score[0:len(score):1]\nX_train_array = array([[element] for element in X_train])\n\n# initialize KNN regressor from sklearn.\nk_neighbors = 30\nknn = KNeighborsRegressor(k_neighbors, 'uniform')\n\n# fitting the pattern-label pairs\nT = np.linspace(0, max_speed, 500)[:, np.newaxis]\nY_hat = knn.fit(X_train_array, Y_train).predict(T)\n\n\n# Last Plot\nstart_speed = 15\nthreshold = 25\nelements = max_speed-start_speed\n\nnum_over_thres = np.zeros((elements), dtype=np.int)\nnum_below_thres = np.zeros((elements), dtype=np.int)\n\nfor i in range(len(X_train)):\n elem = 0\n for j in range(start_speed, max_speed):\n act_value = np.float32(j)\n if (X_train[i] >= (act_value) and X_train[i] < (act_value+1.0)):\n if (Y_train[i] < threshold):\n num_below_thres[elem] += 1\n else:\n num_over_thres[elem] += 1\n elem += 1\n\n\nfraction = np.zeros(max_speed, dtype=np.float32)\nfor i in range(start_speed, len(fraction)):\n if (np.float32(num_below_thres[i-start_speed]+num_over_thres[i-start_speed]) > 0):\n fraction[i] = np.float32(num_below_thres[i-start_speed])/(num_below_thres[i-start_speed]+num_over_thres[i-start_speed])\n else:\n fraction[i] = -1\nprint fraction\n\n\n\nfigure = plt.figure(figsize=(15, 10))\nplot_abs = plt.subplot(2, 2, 1)\nplt.title(\"Measurements\")\nplt.scatter(speed, score, color=\"b\")\nplt.xlim([-1, max_speed])\nplt.xlabel(\"Windspeed [m/s]\")\nplt.ylim([-2, 32])\nplt.ylabel(\"Correct Score [MW]\")\n\nplot_scatter = plt.subplot(2, 2, 2)\nplt.title(\"KNN Interpolation of the Response Curve\")\nplt.plot(T, Y_hat, color='b')\nplt.scatter(speed, score, color=\"#CCCCCC\")\nplt.xlim([-1, max_speed])\nplt.xlabel(\"Windspeed [m/s]\")\nplt.ylim([-2, 32])\nplt.ylabel(\"Correct Score [MW]\")\n\nplot_abs = plt.subplot(2, 2, 3)\nplt.title(\"Distribution of Wind Speeds\")\nplt.hist( X_train, bins=np.float(max_speed), histtype='stepfilled', normed=True, color='b')\nplt.xlim([-1, max_speed])\nplt.ylim(-0.01, 0.13)\nplt.xlabel(\"Windspeed [m/s]\")\nplt.ylabel(\"Relative Frequency\")\n\nplot_scatter = plt.subplot(2, 2, 4)\nplt.title(\"Frequency of Cut-Outs\")\nsteps = range(40)\nplt.plot(steps, fraction, \"o\", color='b')\nplt.xlim([-1,max_speed])\nplt.xlabel(\"Windspeed [m/s]\")\nplt.ylim([-0.1, 1.1])\nplt.ylabel(\"Probabilty of Cut-Out Events (Thres = 15)\")\n\nplt.show()\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
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| [
{
"span": "from matplotlib import dates",
"start_line": 11,
"start_column": 0,
"end_line": 11,
"end_column": 28
},
{
"span": "import datetime, time",
"start_line": 13,
"start_column": 0,
"end_line": 13,
"end_column": 21
},
{
"span": "from numpy import array, matrix",
"start_line": 16,
"start_column": 0,
"end_line": 16,
"end_column": 31
},
{
"span": "from sklearn.grid_search import GridSearchCV",
"start_line": 17,
"start_column": 0,
"end_line": 17,
"end_column": 44
},
{
"span": "from sklearn.cross_validation import KFold",
"start_line": 18,
"start_column": 0,
"end_line": 18,
"end_column": 42
},
{
"span": "from sklearn import __version__ as sklearn_version",
"start_line": 19,
"start_column": 0,
"end_line": 19,
"end_column": 50
},
{
"span": "from sklearn.svm import SVR",
"start_line": 20,
"start_column": 0,
"end_line": 20,
"end_column": 27
},
{
"span": "from windml.visualization.plot_response_curve import plot_response_curve",
"start_line": 24,
"start_column": 0,
"end_line": 24,
"end_column": 72
}
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Except block handles 'BaseException' | treeio/treeio/treeio/messaging/views.py | [
{
"content": "@handle_response_format\n@treeio_login_required\n@_process_mass_form\ndef stream_view(request, stream_id, response_format='html'):\n \"Stream view page\"\n\n user = request.user.profile\n\n stream = get_object_or_404(MessageStream, pk=stream_id)\n if not request.user.profile.has_permission(stream):\n return user_denied(request, message=\"You don't have access to this Stream\",\n response_format=response_format)\n\n if request.user.profile.has_permission(stream, mode='x'):\n if request.POST:\n message = Message()\n message.author = user.get_contact()\n if not message.author:\n return user_denied(request,\n message=\"You can't send message without a Contact Card assigned to you.\",\n response_format=response_format)\n\n form = MessageForm(\n request.user.profile, None, None, request.POST, instance=message)\n if form.is_valid():\n message = form.save()\n message.recipients.add(user.get_contact())\n message.set_user_from_request(request)\n message.read_by.add(user)\n try:\n # if email entered create contact and add to recipients\n if 'multicomplete_recipients' in request.POST and request.POST['multicomplete_recipients']:\n try:\n conf = ModuleSetting.get_for_module(\n 'treeio.messaging', 'default_contact_type')[0]\n default_contact_type = ContactType.objects.get(\n pk=long(conf.value))\n except Exception:\n default_contact_type = None\n emails = request.POST[\n 'multicomplete_recipients'].split(',')\n for email in emails:\n emailstr = unicode(email).strip()\n if re.match('[a-zA-Z0-9+_\\-\\.]+@[0-9a-zA-Z][.-0-9a-zA-Z]*.[a-zA-Z]+', emailstr):\n contact, created = Contact.get_or_create_by_email(\n emailstr, contact_type=default_contact_type)\n message.recipients.add(contact)\n if created:\n contact.set_user_from_request(request)\n except:\n pass\n # send email to all recipients\n message.send_email()\n\n return HttpResponseRedirect(reverse('messaging_stream_view', args=[stream.id]))\n else:\n form = MessageForm(request.user.profile, stream_id)\n\n else:\n form = None\n\n objects = Object.filter_by_request(request, Message.objects.filter(\n reply_to__isnull=True, stream=stream).order_by('-date_created'))\n context = _get_default_context(request)\n context.update({'messages': objects,\n 'form': form,\n 'stream': stream})\n\n return render_to_response('messaging/stream_view', context,\n context_instance=RequestContext(request),\n response_format=response_format)",
"metadata": "root.stream_view",
"header": "['module', '___EOS___']",
"index": 218
},
{
"content": "@handle_response_format\n@treeio_login_required\ndef stream_checkmail(request, stream_id, response_format='html'):\n \"Stream check mail\"\n user = request.user.profile\n\n stream = get_object_or_404(MessageStream, pk=stream_id)\n if not user.has_permission(stream):\n return user_denied(request, message=\"You don't have access to this Stream\",\n response_format=response_format)\n\n try:\n stream.process_email()\n messages.add_message(\n request, messages.INFO, _(\"E-mails fetched successfully.\"), fail_silently=True)\n except:\n try:\n messages.add_message(request, messages.ERROR, _(\n \"Failed to retrieve messages for this stream. Please check stream settings\"), fail_silently=True)\n except:\n pass\n\n return HttpResponseRedirect(reverse('messaging_stream_view', args=[stream.id]))",
"metadata": "root.stream_checkmail",
"header": "['module', '___EOS___']",
"index": 322
},
{
"content": "@handle_response_format\n@treeio_login_required\ndef messaging_compose(request, response_format='html'):\n \"New message page\"\n\n user = request.user.profile\n\n if request.POST:\n if 'cancel' not in request.POST:\n message = Message()\n message.author = user.get_contact()\n if not message.author:\n return user_denied(request,\n message=\"You can't send message without a Contact Card assigned to you.\",\n response_format=response_format)\n\n form = MessageForm(\n request.user.profile, None, None, request.POST, instance=message)\n if form.is_valid():\n message = form.save()\n message.recipients.add(user.get_contact())\n message.set_user_from_request(request)\n message.read_by.add(user)\n try:\n # if email entered create contact and add to recipients\n if 'multicomplete_recipients' in request.POST and request.POST['multicomplete_recipients']:\n try:\n conf = ModuleSetting.get_for_module(\n 'treeio.messaging', 'default_contact_type')[0]\n default_contact_type = ContactType.objects.get(\n pk=long(conf.value))\n except Exception:\n default_contact_type = None\n emails = request.POST[\n 'multicomplete_recipients'].split(',')\n for email in emails:\n emailstr = unicode(email).strip()\n if re.match('[a-zA-Z0-9+_\\-\\.]+@[0-9a-zA-Z][.-0-9a-zA-Z]*.[a-zA-Z]+', emailstr):\n contact, created = Contact.get_or_create_by_email(\n emailstr, contact_type=default_contact_type)\n message.recipients.add(contact)\n if created:\n contact.set_user_from_request(request)\n except:\n pass\n # send email to all recipients\n message.send_email()\n\n return HttpResponseRedirect(reverse('messaging'))\n else:\n return HttpResponseRedirect(reverse('messaging'))\n\n else:\n form = MessageForm(request.user.profile, None)\n\n context = _get_default_context(request)\n context.update({'form': form})\n\n return render_to_response('messaging/message_compose', context,\n context_instance=RequestContext(request), response_format=response_format)",
"metadata": "root.messaging_compose",
"header": "['module', '___EOS___']",
"index": 376
},
{
"content": "@handle_response_format\n@treeio_login_required\ndef messaging_view(request, message_id, response_format='html'):\n \"Single message page\"\n\n message = get_object_or_404(Message, pk=message_id)\n user = request.user.profile\n\n if not user.has_permission(message):\n return user_denied(request, message=\"You don't have access to this Message\",\n response_format=response_format)\n\n message.read_by.add(user)\n\n if request.POST and request.POST.get('body', False):\n \"Unread message\"\n\n reply = Message()\n reply.author = user.get_contact()\n if not reply.author:\n return user_denied(request,\n message=\"You can't send message without a Contact Card assigned to you.\",\n response_format=response_format)\n reply.reply_to = message\n form = MessageReplyForm(\n user, message.stream_id, message, request.POST, instance=reply)\n if form.is_valid():\n reply = form.save()\n reply.set_user_from_request(request)\n # Add author to recipients\n reply.recipients.add(reply.author)\n message.read_by.clear()\n\n try:\n # if email entered create contact and add to recipients\n if 'multicomplete_recipients' in request.POST and request.POST['multicomplete_recipients']:\n try:\n conf = ModuleSetting.get_for_module(\n 'treeio.messaging', 'default_contact_type')[0]\n default_contact_type = ContactType.objects.get(\n pk=long(conf.value))\n except Exception:\n default_contact_type = None\n emails = request.POST[\n 'multicomplete_recipients'].split(',')\n for email in emails:\n emailstr = unicode(email).strip()\n if re.match('[a-zA-Z0-9+_\\-\\.]+@[0-9a-zA-Z][.-0-9a-zA-Z]*.[a-zA-Z]+', emailstr):\n contact, created = Contact.get_or_create_by_email(\n emailstr, contact_type=default_contact_type)\n reply.recipients.add(contact)\n if created:\n contact.set_user_from_request(request)\n except:\n pass\n\n # Add each recipient of the reply to the original message\n for recipient in reply.recipients.all():\n message.recipients.add(recipient)\n\n # send email to all recipients\n reply.send_email()\n\n return HttpResponseRedirect(reverse('messaging_message_view', args=[message.id]))\n\n else:\n form = MessageReplyForm(\n request.user.profile, message.stream_id, message)\n\n replies = Object.filter_by_request(request,\n Message.objects.filter(reply_to=message).order_by('date_created'))\n\n context = _get_default_context(request)\n context.update({'message': message,\n 'messages': replies,\n 'form': form})\n\n return render_to_response('messaging/message_view', context,\n context_instance=RequestContext(request),\n response_format=response_format)",
"metadata": "root.messaging_view",
"header": "['module', '___EOS___']",
"index": 438
},
{
"content": "@handle_response_format\n@treeio_login_required\ndef settings_view(request, response_format='html'):\n \"Settings admin view\"\n\n # default content type\n try:\n conf = ModuleSetting.get_for_module('treeio.messaging', 'default_contact_type',\n user=request.user.profile)[0]\n default_contact_type = ContactType.objects.get(pk=long(conf.value))\n except:\n default_contact_type = None\n\n # default imap folder\n try:\n conf = ModuleSetting.get_for_module(\n 'treeio.messaging', 'default_imap_folder')[0]\n default_imap_folder = conf.value\n except:\n default_imap_folder = getattr(\n settings, 'HARDTREE_MESSAGING_IMAP_DEFAULT_FOLDER_NAME', 'UNSEEN')\n\n # signature\n try:\n conf = ModuleSetting.get_for_module('treeio.messaging', 'signature',\n user=request.user.profile, strict=True)[0]\n signature = conf.value\n except:\n signature = ''\n\n types = Object.filter_by_request(\n request, ContactType.objects.order_by('name'))\n\n context = _get_default_context(request)\n context.update({'types': types,\n 'signature': signature,\n 'default_contact_type': default_contact_type,\n 'default_imap_folder': default_imap_folder})\n\n return render_to_response('messaging/settings_view', context,\n context_instance=RequestContext(request),\n response_format=response_format)",
"metadata": "root.settings_view",
"header": "['module', '___EOS___']",
"index": 680
}
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|
Unused import | rll/lfd/lfd/rapprentice/compute_decomps.py | [
{
"content": "import h5py\nimport numpy as np\nimport scipy.linalg\nimport argparse\n\nfrom lfd.rapprentice.tps import tps_kernel_matrix \n\n\n\n\n\nif __name__=='__main__':\n main()\n \n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "def parse_arguments():\n parser = argparse.ArgumentParser()\n parser.add_argument('datafile', type=str)\n parser.add_argument('--bend_coeff_init', type=float, default=10)\n parser.add_argument('--bend_coeff_final', type=float, default=.1)\n parser.add_argument('--n_iter', type=int, default=20)\n parser.add_argument('--verbose', action='store_true')\n return parser.parse_args()",
"metadata": "root.parse_arguments",
"header": "['module', '___EOS___']",
"index": 7
},
{
"content": "def get_lu_decomp(x_na, bend_coef, rot_coef):\n \"\"\"\n precomputes the LU decomposition and other intermediate results needed\n to fit a TPS to x_na with bend_coeff\n\n all thats needed is to compute the righthand side and do a forward solve\n \"\"\"\n \n n,d = x_na.shape\n Q = np.c_[np.ones((n,1)), x_na, K_nn]\n QWQ = Q.T.dot(WQ)\n H = Q.T.dot(Q)\n H[d+1:,d+1:] += bend_coef * K_nn\n rot_coefs = np.ones(d) * rot_coef if np.isscalar(rot_coef) else rot_coef\n H[1:d+1, 1:d+1] += np.diag(rot_coefs)\n\n A = np.r_[np.zeros((d+1,d+1)), np.c_[np.ones((n,1)), x_na]].T\n\n # f = -WQ.T.dot(y_ng)\n # f[1:d+1,0:d] -= np.diag(rot_coefs)\n\n _u,_s,_vh = np.linalg.svd(A.T)\n N = _u[:,n_cnts:]\n\n p, l, u, = scipy.linalg.lu(N.T.dot(H.dot(N)))\n\n # z = np.linalg.solve(N.T.dot(H.dot(N)), -N.T.dot(f))\n # x = N.dot(z)\n\n res_dict = {'p' : p, 'l' : l, 'u' : u, 'N' : N, 'rot_coeffs' : rot_coeffs}\n\n return bend_coeff, res_dict",
"metadata": "root.get_lu_decomp",
"header": "['module', '___EOS___']",
"index": 16
},
{
"content": "def main():\n args = parse_arguments()\n\n f = h5py.File(args.datafile, 'r')\n \n bend_coefs = np.loglinspace(args.bend_coef_init, args.bend_coeff_final, args.n_iter)\n\n for seg_name, seg_info in f.iteritems():\n if 'LU' not in seg_info:\n lu_group = seg_info.create_group('LU')\n else:\n lu_group = seg_info['LU']\n x_na = seg_info['cloud_xyz'][:]\n for bend_coeff in bend_coeffs:\n if str(bend_coeff) in lu_group:\n continue\n \n bend_coeff_g = lu_group.create_group(str(bend_coeff))\n _, res = get_lu_decomp(x_na, bend_coeff)\n for k, v in res.iteritems():\n bend_coeff_g[k] = v\n\n if args.verbose:\n print 'segment {} bend_coeff {}'.format(seg_name, bend_coeff)\n\n f.close()",
"metadata": "root.main",
"header": "['module', '___EOS___']",
"index": 50
}
]
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{
"span": "from lfd.rapprentice.tps import tps_kernel_matrix ",
"start_line": 5,
"start_column": 0,
"end_line": 5,
"end_column": 49
}
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Except block handles 'BaseException' | aerospike/aerospike-client-python/test/old_tests/test_admin_revoke_roles.py | [
{
"content": "# -*- coding: utf-8 -*-\n\nimport pytest\nimport sys\nimport time\nfrom .test_base_class import TestBaseClass\nfrom aerospike import exception as e\n\naerospike = pytest.importorskip(\"aerospike\")\ntry:\n import aerospike\nexcept:\n print(\"Please install aerospike python client.\")\n sys.exit(1)\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
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},
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"content": " def setup_method(self, method):\n \"\"\"\n Setup method\n \"\"\"\n hostlist, user, password = TestBaseClass().get_hosts()\n config = {\"hosts\": hostlist}\n TestRevokeRoles.Me = self\n self.client = aerospike.client(config).connect(user, password)\n try:\n self.client.admin_drop_user(\"example-test\")\n except:\n pass\n policy = {}\n user = \"example-test\"\n password = \"foo2\"\n roles = [\"read-write\", \"sys-admin\", \"read\"]\n\n self.client.admin_create_user(user, password, roles, policy)\n\n self.delete_users = []",
"metadata": "root.TestRevokeRoles.setup_method",
"header": "['class', 'TestRevokeRoles', '(', 'TestBaseClass', ')', ':', '___EOS___']",
"index": 22
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| [
{
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{
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Unused import | gferreira/hTools2/Lib/hTools2/dialogs/font/vmetrics_adjust2.py | [
{
"content": "# [h] adjust vertical metrics\n\n# import\n\ntry:\n from mojo.roboFont import CurrentFont, CurrentGlyph\n\nexcept ImportError:\n from robofab.world import CurrentFont, CurrentGlyph\n\nfrom vanilla import *\n\nfrom hTools2 import hDialog\nfrom hTools2.dialogs.misc import Spinner\nfrom hTools2.modules.fontutils import get_full_name\nfrom hTools2.modules.messages import no_font_open\n\n# object\n\n",
"metadata": "root",
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{
"content": "class adjustVerticalMetrics(hDialog):\n\n \"\"\"A dialog to adjust the vertical metrics of the font.\n\n .. image:: imgs/font/adjust-vmetrics.png\n\n \"\"\"\n\n ascender_min = 1\n capheight_min = 1\n xheight_min = 1\n descender_min = 1\n\n column_1 = 80\n column_2 = 200\n column_3 = 45\n\n moveX = 0\n moveY = 0\n",
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},
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"content": " def __init__(self):\n self.title = \"vmetrics\"\n self.height = (self.spinner_height*5) + (self.padding_y*6) + 1\n self.w = FloatingWindow((self.width, self.height), self.title)\n x = 0\n y = self.padding_y\n self.w.emsquare = Spinner(\n (x, y),\n default='1000',\n scale=1,\n integer=True,\n label='ems')\n y += self.spinner_height + self.padding_y\n self.w.xheight = Spinner(\n (x, y),\n default='500',\n scale=1,\n integer=True,\n label='xht')\n y += self.spinner_height + self.padding_y\n self.w.capheight = Spinner(\n (x, y),\n default='700',\n scale=1,\n integer=True,\n label='cap')\n y += self.spinner_height + self.padding_y\n self.w.ascender = Spinner(\n (x, y),\n default='800',\n scale=1,\n integer=True,\n label='asc')\n y += self.spinner_height + self.padding_y\n self.w.descender = Spinner(\n (x, y),\n default='200',\n scale=1,\n integer=True,\n label='dsc')\n y += self.spinner_height + self.padding_y\n self.w.open()",
"metadata": "root.adjustVerticalMetrics.__init__",
"header": "['class', 'adjustVerticalMetrics', '(', 'hDialog', ')', ':', '___EOS___']",
"index": 39
}
]
| [
{
"span": "from mojo.roboFont import CurrentFont, CurrentGlyph",
"start_line": 5,
"start_column": 4,
"end_line": 5,
"end_column": 55
},
{
"span": "from robofab.world import CurrentFont, CurrentGlyph",
"start_line": 8,
"start_column": 4,
"end_line": 8,
"end_column": 55
},
{
"span": "from hTools2.modules.fontutils import get_full_name",
"start_line": 14,
"start_column": 0,
"end_line": 14,
"end_column": 51
},
{
"span": "from hTools2.modules.messages import no_font_open",
"start_line": 15,
"start_column": 0,
"end_line": 15,
"end_column": 49
}
]
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Unused local variable | taoliu/taolib/Scripts/wig_correlation.py | [
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"content": "def main():\n usage = \"usage: %prog <-r rfile> [options] <wiggle files> ...\"\n description = \"Draw correlation plot for many wiggle files. Based on qc_chIP_whole.py\"\n \n optparser = OptionParser(version=\"%prog 0.1\",description=description,usage=usage,add_help_option=False)\n optparser.add_option(\"-h\",\"--help\",action=\"help\",help=\"Show this help message and exit.\")\n optparser.add_option(\"-d\",\"--db\",type=\"str\",dest=\"dbname\",help=\"UCSC db name for the assembly. Default: ce4\",default=\"ce4\")\n optparser.add_option(\"-r\",\"--rfile\",dest=\"rfile\",\n help=\"R output file. If not set, do not save R file.\")\n optparser.add_option(\"-s\",\"--step\",dest=\"step\",type=\"int\",\n help=\"sampling step in kbps. default: 100, minimal: 1\",default=100)\n optparser.add_option(\"-z\",\"--imgsize\",dest=\"imgsize\",type=\"int\",\n help=\"image size in inches, note the PNG dpi is 72. default: 10, minimal: 10\",default=10) \n optparser.add_option(\"-f\",\"--format\",dest=\"imgformat\",type=\"string\",\n help=\"image format. PDF or PNG\",default='PDF')\n optparser.add_option(\"-m\",\"--method\",dest=\"method\",type=\"string\",default=\"median\",\n help=\"method to process the paired two sets of data in the sampling step. Choices are 'median', 'mean', and 'sample' (just take one point out of a data set). Default: median\")\n optparser.add_option(\"-l\",\"--wig-label\",dest=\"wiglabel\",type=\"string\",action=\"append\",\n help=\"the wiggle file labels in the figure. No space is allowed. This option should be used same times as wiggle files, and please input them in the same order as -w option. default: will use the wiggle file filename as labels.\")\n optparser.add_option(\"--min-score\",dest=\"minscore\",type=\"float\",default=-10000,\n help=\"minimum score included in calculation. Points w/ score lower than this will be discarded.\")\n optparser.add_option(\"--max-score\",dest=\"maxscore\",type=\"float\",default=10000,\n help=\"maximum score included in calculation. Points w/ score larger than this will be discarded.\")\n optparser.add_option(\"-H\",\"--heatmap\",dest=\"heatmap\",action=\"store_true\",default=False,\n help=\"If True, a heatmap image will be generated instead of paired scatterplot image.\")\n \n (options,wigfiles) = optparser.parse_args()\n\n imgfmt = options.imgformat.upper()\n if imgfmt != 'PDF' and imgfmt != 'PNG':\n print \"unrecognized format: %s\" % imgfmt\n sys.exit(1)\n\n method = options.method.lower()\n if method == 'median':\n medfunc = median\n elif method == 'mean':\n medfunc = mean\n elif method == 'sample':\n medfunc = lambda u: u[-1]\n else:\n print \"unrecognized method: %s\" % (method)\n sys.exit(1)\n\n wigfilenum = len(wigfiles)\n\n # must provide >=2 wiggle files\n if wigfilenum < 2 or not options.rfile:\n optparser.print_help()\n sys.exit(1)\n\n # wig labels\n if options.wiglabel and len(options.wiglabel) == wigfilenum:\n wiglabel = options.wiglabel\n else: # or use the filename\n wiglabel = map(lambda x:os.path.basename(x),wigfiles)\n \n\n if options.step < 1:\n error(\"Step can not be lower than 1!\")\n sys.exit(1)\n if options.imgsize < 10:\n error(\"Image size can not be lower than 10!\")\n sys.exit(1)\n\n # check the files\n for f in wigfiles:\n if not os.path.isfile(f):\n error(\"%s is not valid!\" % f)\n sys.exit(1)\n \n wigfhds = map(open,wigfiles) # file handlers for wiggle files\n\n info(\"number of wiggle files: %d\" % wigfilenum)\n # get chromosome length info from UCSC\n info(\"connect to UCSC to get chromosome length information\")\n try:\n chrom_len = get_chrom_length(options.dbname)\n except:\n error(\"Error!\")\n sys.exit(1)\n\n # get the common chromosome list:\n chromsdict = {}\n for wigfhd in wigfhds:\n tmpset = set([])\n for l in wigfhd:\n if l.find(\"chrom=\") != -1:\n c = re.search(\"chrom=(\\w+)\",l).group(1)\n tmpset.add(c)\n for c in tmpset:\n chromsdict[c] = chromsdict.setdefault(c,0)+1\n chroms = []\n for c in chromsdict.keys():\n if chromsdict[c]==wigfilenum:\n chroms.append(c)\n\n info(\"common chromosomes are %s...\" % \",\".join(chroms))\n\n if options.rfile:\n rfhd = open(options.rfile,\"w\")\n rfhd.write('''\nrequire(\"RColorBrewer\") ## from CRAN\n''')\n\n # for each wig file, sample...\n for i in range(len(wigfhds)):\n wigfhd = wigfhds[i]\n wigfhd.seek(0) # reset\n info(\"read wiggle track from wiggle file #%d\" % (i+1))\n wig = WiggleIO.WiggleIO(wigfhd).build_binKeeper(chromLenDict=chrom_len,bin=options.step)\n p = [] # size of p is number of cages in binkeeper\n ap = p.append\n for chrom in chroms:\n step_region = []\n step_region_a = step_region.append\n try:\n end_of_chrom = chrom_len[chrom]\n except:\n warn(\"chromosome %s can not be found in UCSC... skip...\" % chrom)\n continue\n bkeeper = wig[chrom] # binkeeper object\n for (parray,varray) in bkeeper.cage: # for each cage in binkeeper, there are [position array] and [value array].\n if varray:\n ap(medfunc(varray))\n else:\n ap(None)\n info(\"write values to r file\")\n rfhd.write(\"p%d <- c(\" % i )\n if p[0]:\n rfhd.write(\"%f\" % p[0])\n else:\n rfhd.write(\"NA\")\n for v in p[1:]:\n if v:\n rfhd.write(\",%f\" % v)\n else:\n rfhd.write(\",NA\")\n rfhd.write(\")\\n\")\n \n rfhd.write(\"c <- cbind(p0\")\n for i in range(wigfilenum-1):\n rfhd.write(\",p%d\" % (i+1))\n rfhd.write(\")\\n\")\n \n rfhd.write(\"c <- c[ c[,1]<=%f & c[,1]>=%f \" % (options.maxscore,options.minscore))\n for i in range(wigfilenum-1):\n rfhd.write(\"& c[,%d]<=%f & c[,%d]>=%f \" % (i+2,options.maxscore,i+2,options.minscore))\n rfhd.write(\",]\\n\")\n if imgfmt == 'PDF':\n rfhd.write(\"pdf(\\\"%s.pdf\\\",width=%d,height=%d)\\n\" % (options.rfile,options.imgsize,options.imgsize))\n elif imgfmt == 'PNG':\n rfhd.write(\"png(\\\"%s.png\\\",units=\\\"in\\\",res=150,width=%d,height=%d)\\n\" % (options.rfile,options.imgsize,options.imgsize))\n\n if options.heatmap: # heatmap\n rfhd.write('library(gplots)\\n')\n rfhd.write('''\nm <- cor(c, method=\"pearson\", use=\"pairwise.complete.obs\")\n''')\n labels = \",\".join(map(lambda x:\"\\\"\"+x+\"\\\"\",wiglabel))\n rfhd.write(\"rownames(m) <- c(%s)\\n\" % labels)\n rfhd.write(\"colnames(m) <- c(%s)\\n\" % labels) \n rfhd.write('# draw the heatmap using gplots heatmap.2\\n') \n# rfhd.write('bitmap(\"%s.bmp\",width=%d,height=%d)\\n' % (options.rfile,options.imgsize,options.imgsize))\n rfhd.write('mn <- -1\\n')\n rfhd.write('mx <- 1\\n')\n rfhd.write('n <- 98\\n')\n rfhd.write('bias <- 1\\n')\n rfhd.write('mc <- matrix(as.character(round(m, 2)), ncol=dim(m)[2])\\n')\n rfhd.write('breaks <- seq(mn, mx, (mx-mn)/(n))\\n')\n rfhd.write('cr <- colorRampPalette(colors = c(\"#2927FF\",\"#FFFFFF\",\"#DF5C5C\"), bias=bias)\\n')\n rfhd.write('heatmap.2(m, col = cr(n), breaks=breaks, trace=\"none\", cellnote=mc, notecol=\"black\", notecex=1.8, keysize=0.5, density.info=\"histogram\", margins=c(27.0,27.0), cexRow=2.20, cexCol=2.20, revC=T, symm=T)\\n')\n else: # scatterplot\n rfhd.write('''\npanel.plot <- function( x,y, ... )\n{\n par(new=TRUE)\n m <- cbind(x,y)\n plot(m,col=densCols(m),pch=20)\n lines(lowess(m[!is.na(m[,1])&!is.na(m[,2]),]),col=\"red\") \n}\n \npanel.cor <- function(x, y, digits=2, prefix=\"\", cex.cor, ...)\n{\n usr <- par(\"usr\"); on.exit(par(usr))\n par(usr = c(0, 1, 0, 1))\n r <- cor(x, y,use=\"complete.obs\")\n txt <- format(c(r, 0.123456789), digits=digits)[1]\n txt <- paste(prefix, txt, sep=\"\")\n if(missing(cex.cor)) cex.cor <- 0.8/strwidth(txt)\n text(0.5, 0.5, txt, cex = cex.cor * abs(r))\n}\n''')\n labels = \",\".join(map(lambda x:\"\\\"\"+x+\"\\\"\",wiglabel))\n rfhd.write('''\npairs(c, lower.panel=panel.plot, upper.panel=panel.cor, labels=c(%s))\n''' % (labels))\n\n rfhd.write(\"dev.off()\\n\")\n rfhd.close()\n\n # try to call R\n try:\n subprocess.call(['Rscript',options.rfile])\n except:\n info(\"Please check %s\" % options.rfile)\n else:\n info(\"Please check %s\" % (options.rfile+'.bmp'))",
"metadata": "root.main",
"header": "['module', '___EOS___']",
"index": 95
}
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{
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Unused import | jumoconnect/openjumo/jumodjango/mailer/messager_tasks.py | [
{
"content": "from celery.task import task\nfrom donation.models import Donor\nimport logging\nfrom message.models import Message, Publication\nimport socket\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "@task(ignore_result=True, rate_limit='10/s')\ndef _send_user_message(message_id, campaign_id):\n message = Message.get(message_id)\n pub_id = message.publication_id\n publication = Publication.get(pub_id)\n donor_ids = publication.get_subscribed_donor_ids()\n\n for donor_id in donor_ids:\n _email_donor.delay(donor_id, message.id)",
"metadata": "root._send_user_message",
"header": "['module', '___EOS___']",
"index": 7
},
{
"content": "def send_user_message(message_id):\n \"\"\" Make this call appear synchronous. Usage:\n\n send_user_message(1)\n\n Actually an asynchronous task\n \"\"\"\n\n try:\n _send_user_message.delay(message_id)\n except socket.timeout:\n logging.error(\"Couldn't send message due to socket timeout. Rabbit may be down\")",
"metadata": "root.send_user_message",
"header": "['module', '___EOS___']",
"index": 17
}
]
| [
{
"span": "from donation.models import Donor",
"start_line": 1,
"start_column": 0,
"end_line": 1,
"end_column": 33
}
]
| []
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Testing equality to None | aerospike/aerospike-client-python/test/old_tests/test_admin_query_user.py | [
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Module is imported with 'import' and 'import from' | Yelp/mrjob/mrjob/util.py | [
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Except block handles 'BaseException' | mrknow/filmkodi/plugin.video.specto/resources/lib/libraries/simpledownloader.py | [
{
"content": "def download(name, image, url):\n\n from resources.lib.libraries import control\n\n if url == None:\n return control.infoDialog(control.lang(30501).encode('utf-8'))\n\n try: headers = dict(urlparse.parse_qsl(url.rsplit('|', 1)[1]))\n except: headers = dict('')\n\n url = url.split('|')[0]\n\n content = re.compile('(.+?)\\sS(\\d*)E\\d*$').findall(name)\n transname = name.translate(None, '\\/:*?\"<>|').strip('.')\n levels =['../../../..', '../../..', '../..', '..']\n\n if len(content) == 0:\n dest = control.setting('movie_downloads')\n dest = control.transPath(dest)\n for level in levels:\n try: control.makeFile(os.path.abspath(os.path.join(dest, level)))\n except: pass\n control.makeFile(dest)\n dest = os.path.join(dest, transname)\n control.makeFile(dest)\n else:\n dest = control.setting('tv_downloads')\n dest = control.transPath(dest)\n for level in levels:\n try: control.makeFile(os.path.abspath(os.path.join(dest, level)))\n except: pass\n control.makeFile(dest)\n transtvshowtitle = content[0][0].translate(None, '\\/:*?\"<>|').strip('.')\n dest = os.path.join(dest, transtvshowtitle)\n control.makeFile(dest)\n dest = os.path.join(dest, 'Season %01d' % int(content[0][1]))\n control.makeFile(dest)\n\n ext = os.path.splitext(urlparse.urlparse(url).path)[1][1:]\n if not ext in ['mp4', 'mkv', 'flv', 'avi', 'mpg']: ext = 'mp4'\n dest = os.path.join(dest, transname + '.' + ext)\n\n sysheaders = urllib.quote_plus(json.dumps(headers))\n\n sysurl = urllib.quote_plus(url)\n\n systitle = urllib.quote_plus(name)\n\n sysimage = urllib.quote_plus(image)\n\n sysdest = urllib.quote_plus(dest)\n\n script = inspect.getfile(inspect.currentframe())\n cmd = 'RunScript(%s, %s, %s, %s, %s, %s)' % (script, sysurl, sysdest, systitle, sysimage, sysheaders)\n\n xbmc.executebuiltin(cmd)",
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"content": "def getResponse(url, headers, size):\n try:\n if size > 0:\n size = int(size)\n headers['Range'] = 'bytes=%d-' % size\n\n req = urllib2.Request(url, headers=headers)\n\n resp = urllib2.urlopen(req, timeout=30)\n return resp\n except:\n return None",
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"content": "def doDownload(url, dest, title, image, headers):\n\n headers = json.loads(urllib.unquote_plus(headers))\n\n url = urllib.unquote_plus(url)\n\n title = urllib.unquote_plus(title)\n\n image = urllib.unquote_plus(image)\n\n dest = urllib.unquote_plus(dest)\n\n file = dest.rsplit(os.sep, 1)[-1]\n\n resp = getResponse(url, headers, 0)\n\n if not resp:\n xbmcgui.Dialog().ok(title, dest, 'Download failed', 'No response from server')\n return\n\n try: content = int(resp.headers['Content-Length'])\n except: content = 0\n\n try: resumable = 'bytes' in resp.headers['Accept-Ranges'].lower()\n except: resumable = False\n\n #print \"Download Header\"\n #print resp.headers\n if resumable:\n print \"Download is resumable\"\n\n if content < 1:\n xbmcgui.Dialog().ok(title, file, 'Unknown filesize', 'Unable to download')\n return\n\n size = 1024 * 1024\n mb = content / (1024 * 1024)\n\n if content < size:\n size = content\n\n total = 0\n notify = 0\n errors = 0\n count = 0\n resume = 0\n sleep = 0\n\n if xbmcgui.Dialog().yesno(title + ' - Confirm Download', file, 'Complete file is %dMB' % mb, 'Continue with download?', 'Confirm', 'Cancel') == 1:\n return\n\n print 'Download File Size : %dMB %s ' % (mb, dest)\n\n #f = open(dest, mode='wb')\n f = xbmcvfs.File(dest, 'w')\n\n chunk = None\n chunks = []\n\n while True:\n downloaded = total\n for c in chunks:\n downloaded += len(c)\n percent = min(100 * downloaded / content, 100)\n if percent >= notify:\n xbmc.executebuiltin( \"XBMC.Notification(%s,%s,%i,%s)\" % ( title + ' - Download Progress - ' + str(percent)+'%', dest, 10000, image))\n\n print 'Download percent : %s %s %dMB downloaded : %sMB File Size : %sMB' % (str(percent)+'%', dest, mb, downloaded / 1000000, content / 1000000)\n\n notify += 10\n\n chunk = None\n error = False\n\n try: \n chunk = resp.read(size)\n if not chunk:\n if percent < 99:\n error = True\n else:\n while len(chunks) > 0:\n c = chunks.pop(0)\n f.write(c)\n del c\n\n f.close()\n print '%s download complete' % (dest)\n return done(title, dest, True)\n\n except Exception, e:\n print str(e)\n error = True\n sleep = 10\n errno = 0\n\n if hasattr(e, 'errno'):\n errno = e.errno\n\n if errno == 10035: # 'A non-blocking socket operation could not be completed immediately'\n pass\n\n if errno == 10054: #'An existing connection was forcibly closed by the remote host'\n errors = 10 #force resume\n sleep = 30\n\n if errno == 11001: # 'getaddrinfo failed'\n errors = 10 #force resume\n sleep = 30\n\n if chunk:\n errors = 0\n chunks.append(chunk)\n if len(chunks) > 5:\n c = chunks.pop(0)\n f.write(c)\n total += len(c)\n del c\n\n if error:\n errors += 1\n count += 1\n print '%d Error(s) whilst downloading %s' % (count, dest)\n xbmc.sleep(sleep*1000)\n\n if (resumable and errors > 0) or errors >= 10:\n if (not resumable and resume >= 50) or resume >= 500:\n #Give up!\n print '%s download canceled - too many error whilst downloading' % (dest)\n return done(title, dest, False)\n\n resume += 1\n errors = 0\n if resumable:\n chunks = []\n #create new response\n print 'Download resumed (%d) %s' % (resume, dest)\n resp = getResponse(url, headers, total)\n else:\n #use existing response\n pass",
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"content": " def gds_validate_integer_list(self, input_data, node, input_name=''):\n values = input_data.split()\n for value in values:\n try:\n fvalue = float(value)\n except (TypeError, ValueError), exp:\n raise_parse_error(node, 'Requires sequence of integers')\n return input_data",
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"content": " def gds_validate_float_list(self, input_data, node, input_name=''):\n values = input_data.split()\n for value in values:\n try:\n fvalue = float(value)\n except (TypeError, ValueError), exp:\n raise_parse_error(node, 'Requires sequence of floats')\n return input_data",
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"content": " def gds_validate_double_list(self, input_data, node, input_name=''):\n values = input_data.split()\n for value in values:\n try:\n fvalue = float(value)\n except (TypeError, ValueError), exp:\n raise_parse_error(node, 'Requires sequence of doubles')\n return input_data",
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"content": " def exportChildren(self, outfile, level, namespace_='', name_='scpd', fromsubclass_=False, pretty_print=True):\n if pretty_print:\n eol_ = '\\n'\n else:\n eol_ = ''\n if self.specVersion is not None:\n self.specVersion.export(outfile, level, namespace_, name_='specVersion', pretty_print=pretty_print)\n if self.actionList is not None:\n self.actionList.export(outfile, level, namespace_, name_='actionList', pretty_print=pretty_print)\n if self.serviceStateTable is not None:\n self.serviceStateTable.export(outfile, level, namespace_, name_='serviceStateTable', pretty_print=pretty_print)",
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"content": " def exportChildren(self, outfile, level, namespace_='', name_='ArgumentListType', fromsubclass_=False, pretty_print=True):\n if pretty_print:\n eol_ = '\\n'\n else:\n eol_ = ''\n for argument_ in self.argument:\n argument_.export(outfile, level, namespace_, name_='argument', pretty_print=pretty_print)",
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"content": " def exportChildren(self, outfile, level, namespace_='', name_='ServiceStateTableType', fromsubclass_=False, pretty_print=True):\n if pretty_print:\n eol_ = '\\n'\n else:\n eol_ = ''\n for stateVariable_ in self.stateVariable:\n stateVariable_.export(outfile, level, namespace_, name_='stateVariable', pretty_print=pretty_print)",
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{
"content": "def parse(inFileName):\n doc = parsexml_(inFileName)\n rootNode = doc.getroot()\n rootTag, rootClass = get_root_tag(rootNode)\n if rootClass is None:\n rootTag = 'scpd'\n rootClass = scpd\n rootObj = rootClass.factory()\n rootObj.build(rootNode)\n # Enable Python to collect the space used by the DOM.\n doc = None\n return rootObj",
"metadata": "root.parse",
"header": "['module', '___EOS___']",
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"content": "def parseString(inString):\n from StringIO import StringIO\n doc = parsexml_(StringIO(inString))\n rootNode = doc.getroot()\n rootTag, rootClass = get_root_tag(rootNode)\n if rootClass is None:\n rootTag = 'scpd'\n rootClass = scpd\n rootObj = rootClass.factory()\n rootObj.build(rootNode)\n # Enable Python to collect the space used by the DOM.\n doc = None\n return rootObj",
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},
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"content": "def parseLiteral(inFileName):\n doc = parsexml_(inFileName)\n rootNode = doc.getroot()\n rootTag, rootClass = get_root_tag(rootNode)\n if rootClass is None:\n rootTag = 'scpd'\n rootClass = scpd\n rootObj = rootClass.factory()\n rootObj.build(rootNode)\n # Enable Python to collect the space used by the DOM.\n doc = None\n sys.stdout.write('#from service import *\\n\\n')\n sys.stdout.write('from datetime import datetime as datetime_\\n\\n')\n sys.stdout.write('import service as model_\\n\\n')\n sys.stdout.write('rootObj = model_.rootTag(\\n')\n rootObj.exportLiteral(sys.stdout, 0, name_=rootTag)\n sys.stdout.write(')\\n')\n return rootObj",
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}
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Implicit string concatenation in a list | ubernostrum/django-registration/registration/validators.py | [
{
"content": "\"\"\"\nError messages, data and custom validation code used in\ndjango-registration's various user-registration form classes.\n\n\"\"\"\n\nfrom django.core.exceptions import ValidationError\nfrom django.utils.translation import ugettext_lazy as _\n\n\nDUPLICATE_EMAIL = _(u\"This email address is already in use. \"\n u\"Please supply a different email address.\")\nFREE_EMAIL = _(u\"Registration using free email addresses is prohibited. \"\n u\"Please supply a different email address.\")\nRESERVED_NAME = _(u\"This value is reserved and cannot be registered.\")\nTOS_REQUIRED = _(u\"You must agree to the terms to register\")\n\n\n# Below we construct a large but non-exhaustive list of names which\n# users probably should not be able to register with, due to various\n# risks:\n#\n# * For a site which creates email addresses from username, important\n# common addresses must be reserved.\n#\n# * For a site which creates subdomains from usernames, important\n# common hostnames/domain names must be reserved.\n#\n# * For a site which uses the username to generate a URL to the user's\n# profile, common well-known filenames must be reserved.\n#\n# etc., etc.\n#\n# Credit for basic idea and most of the list to Geoffrey Thomas's blog\n# post about names to reserve:\n# https://ldpreload.com/blog/names-to-reserve\nSPECIAL_HOSTNAMES = [\n # Hostnames with special/reserved meaning.\n 'autoconfig', # Thunderbird autoconfig\n 'autodiscover', # MS Outlook/Exchange autoconfig\n 'broadcasthost', # Network broadcast hostname\n 'isatap', # IPv6 tunnel autodiscovery\n 'localdomain', # Loopback\n 'localhost', # Loopback\n 'wpad', # Proxy autodiscovery\n]\n\n\nPROTOCOL_HOSTNAMES = [\n # Common protocol hostnames.\n 'ftp',\n 'imap',\n 'mail',\n 'news',\n 'pop',\n 'pop3',\n 'smtp',\n 'usenet',\n 'uucp',\n 'webmail',\n 'www',\n]\n\n\nCA_ADDRESSES = [\n # Email addresses known used by certificate authorities during\n # verification.\n 'admin',\n 'administrator',\n 'hostmaster',\n 'info',\n 'is',\n 'it',\n 'mis',\n 'postmaster',\n 'root',\n 'ssladmin',\n 'ssladministrator',\n 'sslwebmaster',\n 'sysadmin',\n 'webmaster',\n]\n\n\nRFC_2142 = [\n # RFC-2142-defined names not already covered.\n 'abuse',\n 'marketing',\n 'noc',\n 'sales',\n 'security',\n 'support',\n]\n\n\nNOREPLY_ADDRESSES = [\n # Common no-reply email addresses.\n 'mailer-daemon',\n 'nobody',\n 'noreply',\n 'no-reply',\n]\n\n\nSENSITIVE_FILENAMES = [\n # Sensitive filenames.\n 'clientaccesspolicy.xml', # Silverlight cross-domain policy file.\n 'crossdomain.xml', # Flash cross-domain policy file.\n 'favicon.ico',\n 'humans.txt',\n 'robots.txt',\n '.htaccess',\n '.htpasswd',\n]\n\n\nOTHER_SENSITIVE_NAMES = [\n # Other names which could be problems depending on URL/subdomain\n # structure.\n 'account',\n 'accounts',\n 'blog',\n 'buy',\n 'clients',\n 'contact',\n 'contactus',\n 'contact-us',\n 'copyright',\n 'dashboard',\n 'doc',\n 'docs',\n 'download',\n 'downloads',\n 'enquiry',\n 'faq',\n 'help',\n 'inquiry',\n 'license',\n 'login',\n 'logout',\n 'payments',\n 'plans',\n 'portfolio',\n 'preferences',\n 'pricing',\n 'privacy',\n 'profile',\n 'register'\n 'secure',\n 'signup',\n 'ssl',\n 'status',\n 'subscribe',\n 'terms',\n 'tos',\n 'user',\n 'users'\n 'weblog',\n 'work',\n]\n\n\nDEFAULT_RESERVED_NAMES = (SPECIAL_HOSTNAMES + PROTOCOL_HOSTNAMES +\n CA_ADDRESSES + RFC_2142 + NOREPLY_ADDRESSES +\n SENSITIVE_FILENAMES + OTHER_SENSITIVE_NAMES)\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
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| [
{
"span": "'register'\n 'secure',",
"start_line": 147,
"start_column": 4,
"end_line": 148,
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{
"span": "'users'\n 'weblog',",
"start_line": 156,
"start_column": 4,
"end_line": 157,
"end_column": 12
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|
Except block handles 'BaseException' | severb/flowy/tests/test_swf_integration.py | [
{
"content": "from __future__ import print_function\n\nimport os\nimport sys\nimport multiprocessing\nimport time\nimport json\nimport uuid\nimport random\nimport functools\nimport gzip\n\nimport vcr\nimport vcr.cassette\nimport vcr.errors\nimport vcr.serialize\nimport vcr.request\nfrom boto.swf.layer1 import Layer1\nfrom flowy import restart\nfrom flowy import wait\nfrom flowy import TaskError\nfrom flowy import SWFActivityConfig\nfrom flowy import SWFActivityWorker\nfrom flowy import SWFWorkflowConfig\nfrom flowy import SWFWorkflowStarter\nfrom flowy import SWFWorkflowWorker\n\nVERSION = 2\nHERE = os.path.dirname(os.path.realpath(__file__))\nA_CASSETTE = os.path.join(HERE, 'cassettes/a.yml.gz')\nW_CASSETTE = os.path.join(HERE, 'cassettes/w.yml.gz')\nDOMAIN = 'IntegrationTest'\nTASKLIST = 'tl'\nIDENTITY = 'test'\n\nRECORDING = False\n\nexit_event = multiprocessing.Event()\nwf_finished_event = multiprocessing.Event()\n\n\n# Patch vcr to use gzip files\n\n\n\n\n\nvcr.cassette.load_cassette = load_cassette\nvcr.cassette.save_cassette = save_cassette\n\n# Patch requests_match in cassette for speed-up\n\n\nvcr.cassette.requests_match = requests_match\n\n# Patch urpalse to speed-up for python3\ntry:\n from functools import lru_cache\n from urllib.parse import urlparse\n vcr.request.urlparse = lru_cache(maxsize=None)(urlparse)\nexcept ImportError:\n pass\n\n\n# patch uuid4 for consistent keys\n\nuuid.uuid4 = functools.partial(next, fake_uuid4())\n\n\n\n\n\n\n\n\n\n\na_conf = SWFActivityConfig(default_task_list=TASKLIST,\n default_schedule_to_start=30,\n default_schedule_to_close=60,\n default_start_to_close=15,\n default_heartbeat=10)\n\n\n\n\nempty_conf = SWFWorkflowConfig(default_task_list=TASKLIST,\n default_decision_duration=10,\n default_workflow_duration=20,\n default_child_policy='TERMINATE', )\nempty_conf.conf_activity('activity', VERSION, 'tactivity')\n\n\n\n\nconf_use_activities = SWFWorkflowConfig(default_task_list=TASKLIST,\n default_decision_duration=10,\n default_workflow_duration=60,\n default_child_policy='TERMINATE')\nconf_use_activities.conf_activity('task', VERSION, 'tactivity')\nconf_use_activities.conf_activity('short_task', VERSION, 'tactivity',\n schedule_to_close=1,\n retry=(0, ))\nconf_use_activities.conf_activity('delayed_task', VERSION, 'tactivity',\n retry=(3, ))\nconf_use_activities.conf_activity('non_existing_task', 1, 'xxx')\n\nconf_use_workflow = SWFWorkflowConfig(default_task_list=TASKLIST,\n default_decision_duration=10,\n default_workflow_duration=60,\n default_child_policy='TERMINATE')\nconf_use_workflow.conf_workflow('task', VERSION, 'TWorkflow')\nconf_use_workflow.conf_workflow('short_task', VERSION, 'TWorkflow',\n workflow_duration=1,\n retry=(0, ))\nconf_use_workflow.conf_workflow('delayed_task', VERSION, 'TWorkflow',\n retry=(3, ))\nconf_use_workflow.conf_workflow('non_existing_task', 1, 'xxx')\n\n\n\n\n\n\n\n\nwworker = TestSWFWorkflowWorker()\nwworker.scan(package=sys.modules[__name__])\naworker = TestSWFActivityWorker()\naworker.scan(package=sys.modules[__name__])\n\n\nbody_cache = {}\n\n\n\n\nvcr.default_vcr.register_matcher('dict_body', body_as_dict)\nvcr.default_vcr.register_matcher('esc_headers', body_as_dict)\n\ncassette_args = {\n 'match_on': ['dict_body', 'esc_headers', 'query', 'method', 'uri', 'host',\n 'port', 'path'],\n 'filter_headers': ['authorization', 'x-amz-date', 'content-length',\n 'user-agent']\n}\n\n\n\n\n\n\n\n\n\n\nif __name__ == '__main__':\n RECORDING = True\n try:\n os.remove(A_CASSETTE)\n except:\n pass\n try:\n os.remove(W_CASSETTE)\n except:\n pass\n\n a_worker = multiprocessing.Process(target=start_activity_worker)\n w_worker = multiprocessing.Process(target=start_workflow_worker)\n\n a_worker.start()\n w_worker.start()\n\n time.sleep(5) # Wait for registration\n\n wfs = ['TestWorkflow', 'TestWorkflowW', 'RestartWorkflow']\n for wf in wfs:\n print('Starting', wf)\n SWFWorkflowStarter(DOMAIN, wf, VERSION)()\n wf_finished_event.wait()\n wf_finished_event.clear()\n\n # Must be the last one\n print('Prepare to exit')\n SWFWorkflowStarter(DOMAIN, 'ExitWorkflow', VERSION)()\n\n a_worker.join()\n w_worker.join()\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
}
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| [
{
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"end_line": 312,
"end_column": 11
},
{
"span": "except:",
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"end_line": 316,
"end_column": 11
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Conflicting attributes in base classes | ga4gh/server/ga4gh/cli.py | [
{
"content": "class AbstractQueryRunner(object):\n \"\"\"\n Abstract base class for runner classes\n \"\"\"",
"metadata": "root.AbstractQueryRunner",
"header": "['module', '___EOS___']",
"index": 158
},
{
"content": " def __init__(self, args):\n self._key = args.key\n # TODO this is an experimental addition which is useful for\n # testing. We should think about this and document it if we\n # this it's a useful feature. There is an argument for pushing\n # the backend instantiation into the client, and letting the\n # client be a factory, instantiating the correct Client class\n # depending on the prefix.\n filePrefix = \"file://\"\n if args.baseUrl.startswith(filePrefix):\n dataDir = args.baseUrl[len(filePrefix):]\n theBackend = backend.Backend(\n datarepo.FileSystemDataRepository(dataDir))\n self._client = client.LocalClient(theBackend)\n else:\n self._client = client.HttpClient(\n args.baseUrl, verbosityToLogLevel(args.verbose), self._key)",
"metadata": "root.AbstractQueryRunner.__init__",
"header": "['class', 'AbstractQueryRunner', '(', 'object', ')', ':', '___EOS___']",
"index": 162
},
{
"content": "class FormattedOutputRunner(AbstractQueryRunner):\n \"\"\"\n Superclass of runners that support output in common formats.\n \"\"\"\n\n",
"metadata": "root.FormattedOutputRunner",
"header": "['module', '___EOS___']",
"index": 181
},
{
"content": " def __init__(self, args):\n super(FormattedOutputRunner, self).__init__(args)\n self._output = self._textOutput\n if args.outputFormat == \"json\":\n self._output = self._jsonOutput",
"metadata": "root.FormattedOutputRunner.__init__",
"header": "['class', 'FormattedOutputRunner', '(', 'AbstractQueryRunner', ')', ':', '___EOS___']",
"index": 185
},
{
"content": " def _jsonOutput(self, gaObjects):\n \"\"\"\n Outputs the specified protocol objects as one JSON string per\n line.\n \"\"\"\n for gaObject in gaObjects:\n print(gaObject.toJsonString())",
"metadata": "root.FormattedOutputRunner._jsonOutput",
"header": "['class', 'FormattedOutputRunner', '(', 'AbstractQueryRunner', ')', ':', '___EOS___']",
"index": 191
},
{
"content": " def _textOutput(self, gaObjects):\n \"\"\"\n Outputs a text summary of the specified protocol objects, one\n per line.\n \"\"\"\n for gaObject in gaObjects:\n if hasattr(gaObject, 'name'):\n print(gaObject.id, gaObject.name, sep=\"\\t\")\n else:\n print(gaObject.id, sep=\"\\t\")",
"metadata": "root.FormattedOutputRunner._textOutput",
"header": "['class', 'FormattedOutputRunner', '(', 'AbstractQueryRunner', ')', ':', '___EOS___']",
"index": 199
},
{
"content": "class AbstractGetRunner(FormattedOutputRunner):\n \"\"\"\n Abstract base class for get runner classes\n \"\"\"\n",
"metadata": "root.AbstractGetRunner",
"header": "['module', '___EOS___']",
"index": 211
},
{
"content": " def __init__(self, args):\n super(AbstractGetRunner, self).__init__(args)\n self._id = args.id",
"metadata": "root.AbstractGetRunner.__init__",
"header": "['class', 'AbstractGetRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 215
},
{
"content": " def run(self):\n response = self._method(self._id)\n self._output([response])",
"metadata": "root.AbstractGetRunner.run",
"header": "['class', 'AbstractGetRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 219
},
{
"content": "class AbstractSearchRunner(FormattedOutputRunner):\n \"\"\"\n Abstract base class for search runner classes\n \"\"\"\n\n\n\n\n\n\n",
"metadata": "root.AbstractSearchRunner",
"header": "['module', '___EOS___']",
"index": 224
},
{
"content": " def __init__(self, args):\n super(AbstractSearchRunner, self).__init__(args)\n self._pageSize = args.pageSize\n self._client.setPageSize(self._pageSize)",
"metadata": "root.AbstractSearchRunner.__init__",
"header": "['class', 'AbstractSearchRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 229
},
{
"content": " def getAllDatasets(self):\n \"\"\"\n Returns all datasets on the server.\n \"\"\"\n return self._client.searchDatasets()",
"metadata": "root.AbstractSearchRunner.getAllDatasets",
"header": "['class', 'AbstractSearchRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 234
},
{
"content": " def getAllVariantSets(self):\n \"\"\"\n Returns all variant sets on the server.\n \"\"\"\n for dataset in self.getAllDatasets():\n iterator = self._client.searchVariantSets(datasetId=dataset.id)\n for variantSet in iterator:\n yield variantSet",
"metadata": "root.AbstractSearchRunner.getAllVariantSets",
"header": "['class', 'AbstractSearchRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 240
},
{
"content": " def getAllFeatureSets(self):\n \"\"\"\n Returns all feature sets on the server.\n \"\"\"\n for dataset in self.getAllDatasets():\n iterator = self._client.searchFeatureSets(datasetId=dataset.id)\n for featureSet in iterator:\n yield featureSet",
"metadata": "root.AbstractSearchRunner.getAllFeatureSets",
"header": "['class', 'AbstractSearchRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 249
},
{
"content": " def getAllReadGroupSets(self):\n \"\"\"\n Returns all readgroup sets on the server.\n \"\"\"\n for dataset in self.getAllDatasets():\n iterator = self._client.searchReadGroupSets(\n datasetId=dataset.id)\n for readGroupSet in iterator:\n yield readGroupSet",
"metadata": "root.AbstractSearchRunner.getAllReadGroupSets",
"header": "['class', 'AbstractSearchRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 258
},
{
"content": " def getAllReadGroups(self):\n \"\"\"\n Get all read groups in a read group set\n \"\"\"\n for dataset in self.getAllDatasets():\n iterator = self._client.searchReadGroupSets(\n datasetId=dataset.id)\n for readGroupSet in iterator:\n readGroupSet = self._client.getReadGroupSet(readGroupSet.id)\n for readGroup in readGroupSet.readGroups:\n yield readGroup.id",
"metadata": "root.AbstractSearchRunner.getAllReadGroups",
"header": "['class', 'AbstractSearchRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 268
},
{
"content": " def getAllReferenceSets(self):\n \"\"\"\n Returns all reference sets on the server.\n \"\"\"\n return self._client.searchReferenceSets()",
"metadata": "root.AbstractSearchRunner.getAllReferenceSets",
"header": "['class', 'AbstractSearchRunner', '(', 'FormattedOutputRunner', ')', ':', '___EOS___']",
"index": 280
},
{
"content": "class VariantFormatterMixin(object):\n \"\"\"\n Simple mixin to format variant objects.\n \"\"\"",
"metadata": "root.VariantFormatterMixin",
"header": "['module', '___EOS___']",
"index": 441
},
{
"content": " def _textOutput(self, gaObjects):\n \"\"\"\n Prints out the specified Variant objects in a VCF-like form.\n \"\"\"\n for variant in gaObjects:\n print(\n variant.id, variant.variantSetId, variant.names,\n variant.referenceName, variant.start, variant.end,\n variant.referenceBases, variant.alternateBases,\n sep=\"\\t\", end=\"\\t\")\n for key, value in variant.info.items():\n print(key, value, sep=\"=\", end=\";\")\n print(\"\\t\", end=\"\")\n for c in variant.calls:\n print(\n c.callSetId, c.genotype, c.genotypeLikelihood, c.info,\n c.phaseset, sep=\":\", end=\"\\t\")\n print()",
"metadata": "root.VariantFormatterMixin._textOutput",
"header": "['class', 'VariantFormatterMixin', '(', 'object', ')', ':', '___EOS___']",
"index": 445
},
{
"content": "class AnnotationFormatterMixin(object):\n \"\"\"\n Simple mixin to format variant objects.\n \"\"\"",
"metadata": "root.AnnotationFormatterMixin",
"header": "['module', '___EOS___']",
"index": 465
},
{
"content": " def _textOutput(self, gaObjects):\n \"\"\"\n Prints out the specified Variant objects in a VCF-like form.\n \"\"\"\n for variantAnnotation in gaObjects:\n print(\n variantAnnotation.id, variantAnnotation.variantId,\n variantAnnotation.variantAnnotationSetId,\n variantAnnotation.createDateTime, sep=\"\\t\", end=\"\\t\")\n for effect in variantAnnotation.transcriptEffects:\n print(effect.alternateBases, sep=\"|\", end=\"|\")\n for so in effect.effects:\n print(so.term, sep=\"&\", end=\"|\")\n print(so.id, sep=\"&\", end=\"|\")\n print(effect.hgvsAnnotation.transcript,\n effect.hgvsAnnotation.protein, sep=\"|\", end=\"\\t\")\n print()",
"metadata": "root.AnnotationFormatterMixin._textOutput",
"header": "['class', 'AnnotationFormatterMixin', '(', 'object', ')', ':', '___EOS___']",
"index": 469
},
{
"content": "class FeatureFormatterMixin(object):\n \"\"\"\n Mix-in class to format Feature (Sequence Annotation) objects\n \"\"\"",
"metadata": "root.FeatureFormatterMixin",
"header": "['module', '___EOS___']",
"index": 488
},
{
"content": " def _textOutput(self, gaObjects):\n for feature in gaObjects:\n print(\n feature.id, feature.parentId, feature.featureSetId,\n feature.referenceName, feature.start, feature.end,\n feature.strand, sep=\"\\t\", end=\"\\t\")\n print(\n \"FeatureType:\", feature.featureType.id,\n feature.featureType.term, end=\"\\t\")\n for attrkey in feature.attributes.vals.keys():\n print(\n attrkey, feature.attributes.vals[attrkey],\n sep=\":\", end=\"; \")\n print()",
"metadata": "root.FeatureFormatterMixin._textOutput",
"header": "['class', 'FeatureFormatterMixin', '(', 'object', ')', ':', '___EOS___']",
"index": 492
},
{
"content": "class SearchVariantsRunner(VariantFormatterMixin, AbstractSearchRunner):\n \"\"\"\n Runner class for the variants/search method.\n \"\"\"\n\n",
"metadata": "root.SearchVariantsRunner",
"header": "['module', '___EOS___']",
"index": 508
},
{
"content": "class SearchVariantAnnotationsRunner(\n AnnotationFormatterMixin, AbstractSearchRunner):\n \"\"\"\n Runner class for the variantannotations/search method.\n \"\"\"\n\n\n",
"metadata": "root.SearchVariantAnnotationsRunner",
"header": "['module', '___EOS___']",
"index": 540
},
{
"content": "class SearchFeaturesRunner(FeatureFormatterMixin, AbstractSearchRunner):\n \"\"\"\n Runner class for the features/search method.\n \"\"\"\n\n",
"metadata": "root.SearchFeaturesRunner",
"header": "['module', '___EOS___']",
"index": 588
},
{
"content": "class GetVariantRunner(VariantFormatterMixin, AbstractGetRunner):\n \"\"\"\n Runner class for the variants/{id} method\n \"\"\"",
"metadata": "root.GetVariantRunner",
"header": "['module', '___EOS___']",
"index": 756
},
{
"content": "class GetFeatureRunner(FeatureFormatterMixin, AbstractGetRunner):\n \"\"\"\n Runner class for the features/{id} method\n \"\"\"",
"metadata": "root.GetFeatureRunner",
"header": "['module', '___EOS___']",
"index": 783
}
]
| [
{
"span": "class SearchVariantsRunner(VariantFormatterMixin, AbstractSearchRunner):",
"start_line": 508,
"start_column": 0,
"end_line": 508,
"end_column": 72
},
{
"span": "class SearchVariantAnnotationsRunner(\n AnnotationFormatterMixin, AbstractSearchRunner):",
"start_line": 540,
"start_column": 0,
"end_line": 541,
"end_column": 56
},
{
"span": "class SearchFeaturesRunner(FeatureFormatterMixin, AbstractSearchRunner):",
"start_line": 588,
"start_column": 0,
"end_line": 588,
"end_column": 72
},
{
"span": "class GetVariantRunner(VariantFormatterMixin, AbstractGetRunner):",
"start_line": 756,
"start_column": 0,
"end_line": 756,
"end_column": 65
},
{
"span": "class GetFeatureRunner(FeatureFormatterMixin, AbstractGetRunner):",
"start_line": 783,
"start_column": 0,
"end_line": 783,
"end_column": 65
}
]
| [
{
"span": "def _textOutput(self, gaObjects):",
"start_line": 199,
"start_column": 4,
"end_line": 199,
"end_column": 37
},
{
"span": "def _textOutput(self, gaObjects):",
"start_line": 445,
"start_column": 4,
"end_line": 445,
"end_column": 37
},
{
"span": "def _textOutput(self, gaObjects):",
"start_line": 469,
"start_column": 4,
"end_line": 469,
"end_column": 37
},
{
"span": "def _textOutput(self, gaObjects):",
"start_line": 492,
"start_column": 4,
"end_line": 492,
"end_column": 37
}
]
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Unused local variable | AppScale/appscale/AppServer/lib/django-1.5/tests/modeltests/many_to_one/tests.py | [
{
"content": " def test_selects(self):\n new_article = self.r.article_set.create(headline=\"John's second story\",\n pub_date=datetime(2005, 7, 29))\n new_article2 = self.r2.article_set.create(headline=\"Paul's story\",\n pub_date=datetime(2006, 1, 17))\n # Reporter objects have access to their related Article objects.\n self.assertQuerysetEqual(self.r.article_set.all(), [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(self.r.article_set.filter(headline__startswith='This'),\n [\"<Article: This is a test>\"])\n self.assertEqual(self.r.article_set.count(), 2)\n self.assertEqual(self.r2.article_set.count(), 1)\n # Get articles by id\n self.assertQuerysetEqual(Article.objects.filter(id__exact=self.a.id),\n [\"<Article: This is a test>\"])\n self.assertQuerysetEqual(Article.objects.filter(pk=self.a.id),\n [\"<Article: This is a test>\"])\n # Query on an article property\n self.assertQuerysetEqual(Article.objects.filter(headline__startswith='This'),\n [\"<Article: This is a test>\"])\n # The API automatically follows relationships as far as you need.\n # Use double underscores to separate relationships.\n # This works as many levels deep as you want. There's no limit.\n # Find all Articles for any Reporter whose first name is \"John\".\n self.assertQuerysetEqual(Article.objects.filter(reporter__first_name__exact='John'),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n # Check that implied __exact also works\n self.assertQuerysetEqual(Article.objects.filter(reporter__first_name='John'),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n # Query twice over the related field.\n self.assertQuerysetEqual(\n Article.objects.filter(reporter__first_name__exact='John',\n reporter__last_name__exact='Smith'),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n # The underlying query only makes one join when a related table is referenced twice.\n queryset = Article.objects.filter(reporter__first_name__exact='John',\n reporter__last_name__exact='Smith')\n self.assertNumQueries(1, list, queryset)\n self.assertEqual(queryset.query.get_compiler(queryset.db).as_sql()[0].count('INNER JOIN'), 1)\n\n # The automatically joined table has a predictable name.\n self.assertQuerysetEqual(\n Article.objects.filter(reporter__first_name__exact='John').extra(\n where=[\"many_to_one_reporter.last_name='Smith'\"]),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n # ... and should work fine with the unicode that comes out of forms.Form.cleaned_data\n self.assertQuerysetEqual(\n Article.objects.filter(reporter__first_name__exact='John'\n ).extra(where=[\"many_to_one_reporter.last_name='%s'\" % 'Smith']),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n # Find all Articles for a Reporter.\n # Use direct ID check, pk check, and object comparison\n self.assertQuerysetEqual(\n Article.objects.filter(reporter__id__exact=self.r.id),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(\n Article.objects.filter(reporter__pk=self.r.id),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(\n Article.objects.filter(reporter=self.r.id),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(\n Article.objects.filter(reporter=self.r),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(\n Article.objects.filter(reporter__in=[self.r.id,self.r2.id]).distinct(),\n [\n \"<Article: John's second story>\",\n \"<Article: Paul's story>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(\n Article.objects.filter(reporter__in=[self.r,self.r2]).distinct(),\n [\n \"<Article: John's second story>\",\n \"<Article: Paul's story>\",\n \"<Article: This is a test>\",\n ])\n # You can also use a queryset instead of a literal list of instances.\n # The queryset must be reduced to a list of values using values(),\n # then converted into a query\n self.assertQuerysetEqual(\n Article.objects.filter(\n reporter__in=Reporter.objects.filter(first_name='John').values('pk').query\n ).distinct(),\n [\n \"<Article: John's second story>\",\n \"<Article: This is a test>\",\n ])",
"metadata": "root.ManyToOneTests.test_selects",
"header": "['class', 'ManyToOneTests', '(', 'TestCase', ')', ':', '___EOS___']",
"index": 118
},
{
"content": " def test_reverse_selects(self):\n a3 = Article.objects.create(id=None, headline=\"Third article\",\n pub_date=datetime(2005, 7, 27), reporter_id=self.r.id)\n a4 = Article.objects.create(id=None, headline=\"Fourth article\",\n pub_date=datetime(2005, 7, 27), reporter_id=str(self.r.id))\n # Reporters can be queried\n self.assertQuerysetEqual(Reporter.objects.filter(id__exact=self.r.id),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(Reporter.objects.filter(pk=self.r.id),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(Reporter.objects.filter(first_name__startswith='John'),\n [\"<Reporter: John Smith>\"])\n # Reporters can query in opposite direction of ForeignKey definition\n self.assertQuerysetEqual(Reporter.objects.filter(article__id__exact=self.a.id),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(Reporter.objects.filter(article__pk=self.a.id),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(Reporter.objects.filter(article=self.a.id),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(Reporter.objects.filter(article=self.a),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__in=[self.a.id,a3.id]).distinct(),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__in=[self.a.id,a3]).distinct(),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__in=[self.a,a3]).distinct(),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__headline__startswith='T'),\n [\"<Reporter: John Smith>\", \"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__headline__startswith='T').distinct(),\n [\"<Reporter: John Smith>\"])\n\n # Counting in the opposite direction works in conjunction with distinct()\n self.assertEqual(\n Reporter.objects.filter(article__headline__startswith='T').count(), 2)\n self.assertEqual(\n Reporter.objects.filter(article__headline__startswith='T').distinct().count(), 1)\n\n # Queries can go round in circles.\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__reporter__first_name__startswith='John'),\n [\n \"<Reporter: John Smith>\",\n \"<Reporter: John Smith>\",\n \"<Reporter: John Smith>\",\n ])\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__reporter__first_name__startswith='John').distinct(),\n [\"<Reporter: John Smith>\"])\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__reporter__exact=self.r).distinct(),\n [\"<Reporter: John Smith>\"])\n\n # Check that implied __exact also works.\n self.assertQuerysetEqual(\n Reporter.objects.filter(article__reporter=self.r).distinct(),\n [\"<Reporter: John Smith>\"])\n\n # It's possible to use values() calls across many-to-one relations.\n # (Note, too, that we clear the ordering here so as not to drag the\n # 'headline' field into the columns being used to determine uniqueness)\n d = {'reporter__first_name': 'John', 'reporter__last_name': 'Smith'}\n self.assertEqual([d],\n list(Article.objects.filter(reporter=self.r).distinct().order_by()\n .values('reporter__first_name', 'reporter__last_name')))",
"metadata": "root.ManyToOneTests.test_reverse_selects",
"header": "['class', 'ManyToOneTests', '(', 'TestCase', ')', ':', '___EOS___']",
"index": 237
},
{
"content": " def test_select_related(self):\n # Check that Article.objects.select_related().dates() works properly when\n # there are multiple Articles with the same date but different foreign-key\n # objects (Reporters).\n r1 = Reporter.objects.create(first_name='Mike', last_name='Royko', email='[email protected]')\n r2 = Reporter.objects.create(first_name='John', last_name='Kass', email='[email protected]')\n a1 = Article.objects.create(headline='First', pub_date=datetime(1980, 4, 23), reporter=r1)\n a2 = Article.objects.create(headline='Second', pub_date=datetime(1980, 4, 23), reporter=r2)\n self.assertEqual(list(Article.objects.select_related().dates('pub_date', 'day')),\n [\n datetime(1980, 4, 23, 0, 0),\n datetime(2005, 7, 27, 0, 0),\n ])\n self.assertEqual(list(Article.objects.select_related().dates('pub_date', 'month')),\n [\n datetime(1980, 4, 1, 0, 0),\n datetime(2005, 7, 1, 0, 0),\n ])\n self.assertEqual(list(Article.objects.select_related().dates('pub_date', 'year')),\n [\n datetime(1980, 1, 1, 0, 0),\n datetime(2005, 1, 1, 0, 0),\n ])",
"metadata": "root.ManyToOneTests.test_select_related",
"header": "['class', 'ManyToOneTests', '(', 'TestCase', ')', ':', '___EOS___']",
"index": 308
},
{
"content": " def test_delete(self):\n new_article = self.r.article_set.create(headline=\"John's second story\",\n pub_date=datetime(2005, 7, 29))\n new_article2 = self.r2.article_set.create(headline=\"Paul's story\",\n pub_date=datetime(2006, 1, 17))\n a3 = Article.objects.create(id=None, headline=\"Third article\",\n pub_date=datetime(2005, 7, 27), reporter_id=self.r.id)\n a4 = Article.objects.create(id=None, headline=\"Fourth article\",\n pub_date=datetime(2005, 7, 27), reporter_id=str(self.r.id))\n # If you delete a reporter, his articles will be deleted.\n self.assertQuerysetEqual(Article.objects.all(),\n [\n \"<Article: Fourth article>\",\n \"<Article: John's second story>\",\n \"<Article: Paul's story>\",\n \"<Article: Third article>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(Reporter.objects.order_by('first_name'),\n [\n \"<Reporter: John Smith>\",\n \"<Reporter: Paul Jones>\",\n ])\n self.r2.delete()\n self.assertQuerysetEqual(Article.objects.all(),\n [\n \"<Article: Fourth article>\",\n \"<Article: John's second story>\",\n \"<Article: Third article>\",\n \"<Article: This is a test>\",\n ])\n self.assertQuerysetEqual(Reporter.objects.order_by('first_name'),\n [\"<Reporter: John Smith>\"])\n # You can delete using a JOIN in the query.\n Reporter.objects.filter(article__headline__startswith='This').delete()\n self.assertQuerysetEqual(Reporter.objects.all(), [])\n self.assertQuerysetEqual(Article.objects.all(), [])",
"metadata": "root.ManyToOneTests.test_delete",
"header": "['class', 'ManyToOneTests', '(', 'TestCase', ')', ':', '___EOS___']",
"index": 332
}
]
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Unused import | AppScale/appscale/AppServer/lib/concurrent/concurrent/futures/__init__.py | [
{
"content": "# Copyright 2009 Brian Quinlan. All Rights Reserved.\n# Licensed to PSF under a Contributor Agreement.\n\n\"\"\"Execute computations asynchronously using threads or processes.\"\"\"\n\n__author__ = 'Brian Quinlan ([email protected])'\n\nfrom concurrent.futures._base import (FIRST_COMPLETED,\n FIRST_EXCEPTION,\n ALL_COMPLETED,\n CancelledError,\n TimeoutError,\n Future,\n Executor,\n wait,\n as_completed)\nfrom concurrent.futures.process import ProcessPoolExecutor\nfrom concurrent.futures.thread import ThreadPoolExecutor\n",
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Unused local variable | evfredericksen/pynacea/pynhost/pynhost/commands.py | [
{
"content": "def new_action_list(raw_actions, rule_match=None):\n words = rule_match.matched_words if rule_match else ()\n new_actions = []\n for action in raw_actions:\n if isinstance(action, dynamic.Num):\n action = action.evaluate(rule_match)\n elif isinstance (action, (list, tuple)):\n func = action[0]\n for action in self.actions:\n if not isinstance(action, (int, dynamic.RepeatCommand)):\n return True\n return False\n\n def __str__(self):\n return '<ActionList matching words {}>'.format(' '.join(self.matched_words))\n\n def __repr__(self):\n return str(self)",
"metadata": "root.new_action_list",
"header": "['module', '___EOS___']",
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Except block handles 'BaseException' | ufora/ufora/ufora/distributed/SharedState/SharedState_test.py | [
{
"content": " def clientThread(self, harness, passIndex, threadIndex, totalThreadCount,\n successList, failureList, connectedThreads, connectedThreadEvent,\n viewList,\n blockUntilConnected\n ):\n try:\n logging.info(\"Connecting to SharedState in thread %s\", threadIndex)\n try:\n view = harness.newView()\n viewList.append(view)\n finally:\n connectedThreads.append(threadIndex)\n\n if len(connectedThreads) == totalThreadCount:\n connectedThreadEvent.set()\n logging.debug(\"All reconnection test threads have connected.\")\n\n\n if blockUntilConnected:\n connectedThreadEvent.wait()\n\n logging.info(\"Have view in thread %s\", threadIndex)\n\n logging.info(\"Connected to shared state in thread %s\", threadIndex)\n\n harness.subscribeToKeyspace(view, NativeJson.Json(\"data\"))\n\n harness.writeToKeyspace(\n view,\n NativeJson.Json(\"data\"),\n NativeJson.Json(str(threadIndex)),\n NativeJson.Json(str(passIndex))\n )\n\n t0 = time.time()\n\n while True:\n itemDict = dict(harness.getAllItemsFromView(view, NativeJson.Json(\"data\")))\n\n allAreCurPass = True\n if len(itemDict) == totalThreadCount:\n for i in itemDict:\n if itemDict[i] != NativeJson.Json(str(passIndex)):\n allAreCurPass = False\n\n if allAreCurPass:\n successList.append(threadIndex)\n return\n\n time.sleep(.01)\n if time.time() - t0 > 5.0:\n failureList.append(\"Bad dict: %s\" % itemDict)\n return\n\n view.flush()\n except:\n failureList.append(\"Exception: \" + traceback.format_exc())",
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"content": " def test_file_management(self):\n tempDir = tempfile.mkdtemp()\n\n curOpenFiles = len(os.listdir('/proc/%s/fd' % os.getpid()))\n\n OPEN_FILE_LIMIT = 200\n\n if curOpenFiles >= OPEN_FILE_LIMIT:\n os.system(\"ls -alh /proc/%s/fd\" % os.getpid())\n\n self.assertTrue(curOpenFiles < OPEN_FILE_LIMIT, \"Too many open files: %s\" % curOpenFiles)\n\n soft, hard = resource.getrlimit(resource.RLIMIT_OFILE)\n\n harness = self.getHarness(inMemory=True,\n cachePathOverride=tempDir,\n maxOpenFiles=15)\n try:\n v1 = harness.newView()\n resource.setrlimit(resource.RLIMIT_OFILE, (curOpenFiles + 30, hard))\n\n for ix in range(128):\n space = SharedState.Keyspace(\"TakeHighestIdKeyType\",\n NativeJson.Json(\"TestSpace%s\" % ix),\n 1)\n rng = SharedState.KeyRange(space, 0, None, None, True, False)\n v1.subscribe(rng)\n key = SharedState.Key(space, (NativeJson.Json('key%s' % ix),))\n with SharedState.Transaction(v1):\n v1[key] = NativeJson.Json('value %s' % ix)\n finally:\n time.sleep(0.01)\n harness.teardown()\n resource.setrlimit(resource.RLIMIT_OFILE, (soft, hard))\n try:\n shutil.rmtree(tempDir)\n except:\n pass",
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Unused import | open-cloud/xos/xos/core/models/serviceclass.py | [
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"metadata": "root",
"header": "['module', '___EOS___']",
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"content": "def get_default_serviceclass():\n try:\n return ServiceClass.objects.get(name=\"Best Effort\")\n except ServiceClass.DoesNotExist:\n return None",
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"content": "class ServiceClass(PlCoreBase):\n name = StrippedCharField(max_length=32)\n description = StrippedCharField(max_length=255)\n commitment = models.IntegerField(default=365)\n membershipFee = models.IntegerField(default=0)\n membershipFeeMonths = models.IntegerField(default=12)\n upgradeRequiresApproval = models.BooleanField(default=False)\n upgradeFrom = models.ManyToManyField('self', blank=True, null=True)\n\n class Meta(PlCoreBase.Meta):\n verbose_name_plural = \"Service classes\"\n\n",
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"content": " def save_by_user(self, user, *args, **kwds):\n if self.can_update(user):\n super(ServiceClass, self).save(*args, **kwds)",
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Unused local variable | slinderman/pyhawkes/test/test_sbm_mf.py | [
{
"content": "def test_sbm_mf(seed=None):\n \"\"\"\n Create a discrete time Hawkes model and generate from it.\n\n :return:\n \"\"\"\n if seed is None:\n seed = np.random.randint(2**32)\n\n print \"Setting seed to \", seed\n np.random.seed(seed)\n\n C = 5\n K = 100\n T = 1000\n dt = 1.0\n B = 3\n p = 0.4 * np.eye(C) + (0.05) * (1-np.eye(C))\n\n # Generate from a true model\n network_hypers = {'C': C, 'beta': 1.0/K, 'p': p}\n true_model = DiscreteTimeNetworkHawkesModelSpikeAndSlab(K, dt=dt, B=B,\n network_hypers=network_hypers)\n c = true_model.network.c\n perm = np.argsort(c)\n #\n # Plot the true network\n plt.ion()\n plot_network(true_model.weight_model.A[np.ix_(perm, perm)],\n true_model.weight_model.W[np.ix_(perm, perm)])\n plt.pause(0.001)\n\n # Make a new model for inference\n test_network_hypers = {'C': C, 'beta': 1.0/K, 'tau0': 0.5, 'tau1': 0.5}\n test_model = DiscreteTimeNetworkHawkesModelGammaMixture(K=K, dt=dt, B=B,\n network_hypers=test_network_hypers)\n test_model.weight_model.initialize_from_gibbs(true_model.weight_model.A,\n true_model.weight_model.W)\n\n # Plot the block probabilities\n plt.figure()\n im = plt.imshow(test_model.network.mf_m[perm,:],\n interpolation=\"none\", cmap=\"Greys\",\n aspect=float(C)/K)\n plt.xlabel('C')\n plt.ylabel('K')\n plt.show()\n plt.pause(0.001)\n\n # Run mean field updates for the SBM given a fixed network\n N_iters = 20\n c_samples = []\n vlbs = []\n for itr in xrange(N_iters):\n if itr % 5 == 0:\n print \"Iteration: \", itr\n\n # Update the plot\n im.set_data(test_model.network.mf_m[perm,:])\n plt.pause(0.001)\n\n\n # Resample from meanfield distribution\n test_model.network.resample_from_mf()\n c_samples.append(copy.deepcopy(test_model.network.c))\n vlbs.append(test_model.network.get_vlb() + test_model.weight_model.get_vlb())\n\n if itr > 0:\n\n if vlbs[-1] - vlbs[-2] < -1e-3:\n print \"VLBS are not increasing\"\n print np.array(vlbs)\n # import pdb; pdb.set_trace()\n raise Exception(\"VLBS are not increasing!\")\n\n\n # Take a mean field step\n test_model.network.meanfieldupdate(test_model.weight_model)\n\n plt.ioff()\n\n # Compute sample statistics for second half of samples\n c_samples = np.array(c_samples)\n vlbs = np.array(vlbs)\n\n print \"True c: \", true_model.network.c\n print \"Test c: \", c_samples[-10:, :]\n\n # Compute the adjusted mutual info score of the clusterings\n amis = []\n arss = []\n for c in c_samples:\n amis.append(adjusted_mutual_info_score(true_model.network.c, c))\n arss.append(adjusted_rand_score(true_model.network.c, c))\n\n plt.figure()\n plt.plot(np.arange(N_iters), amis, '-r')\n plt.plot(np.arange(N_iters), arss, '-b')\n plt.xlabel(\"Iteration\")\n plt.ylabel(\"Clustering score\")\n\n plt.figure()\n plt.plot(np.arange(N_iters), vlbs)\n plt.xlabel(\"Iteration\")\n plt.ylabel(\"VLB\")\n\n plt.show()\n #\n # plt.close('all')",
"metadata": "root.test_sbm_mf",
"header": "['module', '___EOS___']",
"index": 11
}
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| [
{
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"end_line": 25,
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Except block handles 'BaseException' | paypal/support/support/meta_service/meta_service.py | [
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"content": "def get_pytypes():\n answer = defaultdict(lambda: 0)\n try:\n for ob in gc.get_objects():\n answer[repr(type(ob))] += 1\n except:\n pass\n return answer",
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"content": "def get_pytypes_len_gen():\n try:\n yield \"{\\n\"\n\n def get_total_size(obj, n=0):\n if n > 10:\n return 0\n obj_len = 0\n try:\n if callable(getattr(obj, '__len__', False)):\n obj_len += int(obj.__len__())\n except:\n pass\n for a in gc.get_referents(obj):\n obj_len += get_total_size(a, n + 1)\n return obj_len\n\n for ob in gc.get_objects():\n if getattr(ob, '__len__', False):\n yield \"\\\"\" + repr(type(ob)) + \":\" + str(id(ob)) + \"\\\": [\" + str(len(ob)) \\\n + \", \" + str(get_total_size(ob)) + \"]\\n\"\n\n except Exception as e:\n yield \"\\\"error\\\":\\\"\" + repr(e).replace(\"\\\"\", \"\\\\\\\"\") + \"\\\"\\n\"\n yield \"}\\n\"",
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"content": "def get_fd_info():\n '''\n Gathers and correlates fd info from 3 sources:\n\n 1. gc over all objects that have a fileno(); this is most 'socket-like' things\n 2. infra Context object data structures\n 3. psutil information\n 4. /proc filesystem (if available)\n\n This function is a little bit open-ended, we can probably continue\n to find additional sources of information\n '''\n import psutil\n\n fd_info = collections.defaultdict(\n lambda: {'gc_objs': [], '/proc': {}, 'context': [], 'psutil': {}})\n\n # 1 - all objects with filenos\n for obj in gc.get_objects():\n try:\n fd = None\n if hasattr(obj, 'fileno') and callable(obj.fileno):\n fd = obj.fileno()\n except: # there are a zillion boring reasons this may fail\n pass\n if isinstance(fd, (int, long)):\n fd_info[fd]['gc_objs'].append(obj)\n\n # 2 - inspection of data-structures in context\n ctx = context.get_context()\n socks = []\n if ctx.connection_mgr:\n for model in ctx.connection_mgr.server_models.values():\n socks.extend(model.active_connections)\n if ctx.client_sockets:\n socks.extend(ctx.client_sockets)\n if ctx.server_group:\n socks.extend(ctx.server_group.socks.values())\n for sock in socks:\n fd_info[sock.fileno()]['context'].append(sock)\n\n # 3 - psutil information\n process = psutil.Process()\n for f in process.get_open_files():\n if f.fd == -1:\n continue\n fd_info[f.fd]['psutil']['path'] = f.path\n for conn in process.get_connections(kind='all'):\n if conn.fd == -1:\n continue\n fd_info[conn.fd]['psutil'].update(vars(conn))\n del fd_info[conn.fd]['psutil']['fd']\n\n # 4 - /proc filesystem\n proc_path = \"/proc/\" + str(os.getpid())\n if not os.path.exists(proc_path):\n return dict(fd_info)\n\n for fd in os.listdir(proc_path + \"/fd\"):\n try:\n inode = os.readlink(proc_path + \"/fd/\" + fd)\n except OSError:\n continue\n else:\n fd = int(fd)\n fd_info[fd]['/proc']['inode'] = inode\n\n return dict(fd_info)",
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"content": "def _transform(v):\n try:\n return dict(v)\n except:\n pass\n try:\n return list(v)\n except:\n pass\n return repr(v)",
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{
"content": " @skip_if_disabled\n def test_delete_not_existing(self):\n \"\"\"\n We test the following:\n\n 0. GET /images/1\n - Verify 404\n 1. DELETE /images/1\n - Verify 404\n \"\"\"\n self.cleanup()\n self.start_servers(**self.__dict__.copy())\n\n api_port = self.api_port\n registry_port = self.registry_port\n\n # 0. GET /images\n # Verify no public images\n path = \"http://%s:%d/v1/images\" % (\"0.0.0.0\", self.api_port)\n http = httplib2.Http()\n response, content = http.request(path, 'GET')\n self.assertEqual(response.status, 200)\n self.assertEqual(content, '{\"images\": []}')\n\n # 1. DELETE /images/1\n # Verify 404 returned\n path = \"http://%s:%d/v1/images/1\" % (\"0.0.0.0\", self.api_port)\n http = httplib2.Http()\n response, content = http.request(path, 'DELETE')\n self.assertEqual(response.status, 404)\n\n self.stop_servers()",
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Unused import | denizalti/concoord/concoord/replica.py | [
{
"content": "'''\n@author: Deniz Altinbuken, Emin Gun Sirer\n@note: The Replica keeps an object and responds to Perform messages received from the Leader.\n@copyright: See LICENSE\n'''\nimport inspect\nimport time\nimport os, sys\nimport signal\nimport cPickle as pickle\nfrom threading import Thread, Lock, Timer, Event\nfrom concoord.pack import Proposal, PValue\nfrom concoord.pvalue import PValueSet\nfrom concoord.nameserver import Nameserver\nfrom concoord.responsecollector import ResponseCollector\nfrom concoord.exception import ConCoordException, BlockingReturn, UnblockingReturn\nfrom concoord.node import *\nfrom concoord.enums import *\nfrom concoord.utils import *\nfrom concoord.message import *\n\nbackoff_event = Event()\n\n\nif __name__=='__main__':\n main()\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class Replica(Node):\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# LEADER STATE\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n## PAXOS METHODS\n\n\n## PAXOS ACCEPTOR MESSAGE HANDLERS\n\n\n\n## PAXOS REPLICA MESSAGE HANDLERS\n\n\n\n\n\n\n\n\n\n\n## SHELL COMMANDS\n\n\n\n\n\n\n## TERMINATION METHODS\n",
"metadata": "root.Replica",
"header": "['module', '___EOS___']",
"index": 22
},
{
"content": " def __init__(self):\n Node.__init__(self)\n # load and initialize the object to be replicated\n import importlib\n objectloc,a,classname = self.objectname.rpartition('.')\n self.object = None\n try:\n module = importlib.import_module(objectloc)\n if hasattr(module, classname):\n self.object = getattr(module, classname)()\n except (ValueError, ImportError, AttributeError):\n self.object = None\n\n if not self.object:\n self.logger.write(\"Object Error\", \"Object cannot be found.\")\n self._graceexit(1)\n try:\n self.token = getattr(self.object, '_%s__concoord_token' % self.objectname)\n except AttributeError as e:\n if self.debug: self.logger.write(\"State\", \"Object initialized without a token.\")\n self.token = None\n\n # leadership state\n self.leader_initializing = False\n self.isleader = False\n self.ballotnumber = (0, 0, self.id)\n self.nexttoexecute = 1\n # decided commands: <commandnumber:command>\n self.decisions = {}\n self.decisionset = set()\n # executed commands: <command:(replycode,commandresult,unblocked{})>\n self.executed = {}\n # commands that are proposed: <commandnumber:command>\n self.proposals = {}\n self.proposalset = set()\n # commands that are received, not yet proposed: <commandnumber:command>\n self.pendingcommands = {}\n self.pendingcommandset = set()\n # commandnumbers known to be in use\n self.usedcommandnumbers = set()\n # nodes being added/deleted\n self.nodesbeingdeleted = set()\n # number for metacommands initiated from this replica\n self.metacommandnumber = 0\n # keep nodes that are recently updated\n self.recentlyupdatedpeerslock = Lock()\n self.recentlyupdatedpeers = []\n\n # Quorum state\n if self.durable:\n self.file = open('concoordlog', 'a')\n\n self.quorumballotnumber = (0, 0, '')\n self.last_accept_msg_id = -1\n self.quorumaccepted = PValueSet()\n self.objectsnapshot = (0,None)\n\n # PERFORMANCE MEASUREMENT VARS\n self.firststarttime = 0\n self.firststoptime = 0\n self.secondstarttime = 0\n self.secondstoptime = 0\n self.count = 0\n\n self.throughput_runs = 0\n self.throughput_stop = 0\n self.throughput_start = 0",
"metadata": "root.Replica.__init__",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 23
},
{
"content": " def __str__(self):\n rstr = \"%s %s:%d\\n\" % (\"LEADER\" if self.isleader else node_names[self.type], self.addr, self.port)\n rstr += \"Members:\\n%s\\n\" % \"\\n\".join(str(peer) for peer in self.replicas)\n rstr += \"Waiting to execute command %d.\\n\" % self.nexttoexecute\n rstr += \"Commands:\\n\"\n for commandnumber, command in self.decisions.iteritems():\n state = ''\n if command in self.executed:\n if isinstance(command, ProposalClientBatch):\n state = '\\t' + str(self.executed[command])\n else:\n state = '\\t' + cr_codes[self.executed[command][0]]+ '\\t' + str(self.executed[command][1])\n rstr += str(commandnumber) + \":\\t\" + str(command) + state + '\\n'\n if len(self.pendingcommands):\n rstr += \"Pending Commands:\\n\"\n for commandnumber, command in self.pendingcommands.iteritems():\n rstr += str(commandnumber) + \":\\t\" + str(command) + '\\n'\n if len(self.proposals):\n rstr += \"Proposals:\\n\"\n for commandnumber, command in self.proposals.iteritems():\n rstr += str(commandnumber) + \":\\t\" + str(command) + '\\n'\n # Add QUORUM State\n rstr += \"Quorum Ballot Number: %s\\n\" % str(self.quorumballotnumber)\n rstr += \"Accepted PValues: %s\\n\" % str(self.quorumaccepted)\n\n return rstr",
"metadata": "root.Replica.__str__",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 91
},
{
"content": " def _import_object(self, name):\n mod = __import__(name)\n components = name.split('.')\n for comp in components[1:]:\n mod = getattr(mod, comp)\n return mod",
"metadata": "root.Replica._import_object",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 118
},
{
"content": " def startservice(self):\n \"\"\"Start the background services associated with a replica.\"\"\"\n Node.startservice(self)\n\n if self.isnameserver and not self.useroute53:\n if self.debug: self.logger.write(\"State\", \"Starting the Nameserver Thread.\")\n # Start a thread for the UDP server\n UDP_server_thread = Thread(target=self.nameserver.udp_server_loop, name='UDPServerThread')\n UDP_server_thread.start()",
"metadata": "root.Replica.startservice",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 125
},
{
"content": " @staticmethod\n def _apply_args_to_method(method, args, _concoord_command):\n argspec = inspect.getargspec(method)\n if argspec.args and argspec.args[-1] == '_concoord_command':\n return method(*args, _concoord_command=_concoord_command)\n elif argspec.keywords is not None:\n return method(*args, _concoord_command=_concoord_command)\n else:\n return method(*args)",
"metadata": "root.Replica._apply_args_to_method",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 135
},
{
"content": " def performcore_clientbatch(self, commandbatch, designated=False):\n '''performs all clientrequests in a clientbatch and returns a batched result.'''\n if self.debug: self.logger.write(\"State\", \"Performing client batch.\")\n clientreplies = []\n for commandtuple in commandbatch.command:\n commandname = commandtuple[0]\n commandargs = commandtuple[1:]\n # Result triple\n clientreplycode, givenresult, unblocked = (-1, None, {})\n try:\n method = getattr(self.object, commandname)\n # Watch out for the lock release and acquire!\n self.lock.release()\n try:\n givenresult = method(*commandargs)\n clientreplycode = CR_OK\n except BlockingReturn as blockingretexp:\n if self.debug: self.logger.write(\"State\", \"Blocking Client.\")\n givenresult = blockingretexp.returnvalue\n clientreplycode = CR_BLOCK\n except UnblockingReturn as unblockingretexp:\n if self.debug: self.logger.write(\"State\", \"Unblocking Client(s).\")\n # Get the information about the method call\n # These will be used to update executed and\n # to send reply message to the caller client\n givenresult = unblockingretexp.returnvalue\n unblocked = unblockingretexp.unblocked\n clientreplycode = CR_OK\n # If there are clients to be unblocked that have\n # been blocked previously, send them unblock messages\n for unblockedclientcommand in unblocked.iterkeys():\n self.send_reply_to_client(CR_UNBLOCK, None, unblockedclientcommand)\n except Exception as e:\n if self.debug: self.logger.write(\"Execution Error\", \"Error during method invocation: %s\" % str(e))\n givenresult = pickle.dumps(e)\n clientreplycode = CR_EXCEPTION\n unblocked = {}\n self.lock.acquire()\n except (TypeError, AttributeError) as t:\n if self.debug: self.logger.write(\"Execution Error\",\n \"command not supported: %s\" % str(commandname))\n if self.debug: self.logger.write(\"Execution Error\", \"%s\" % str(t))\n\n givenresult = 'Method Does Not Exist: ', commandname\n clientreplycode = CR_EXCEPTION\n unblocked = {}\n clientreplies.append((clientreplycode, givenresult, unblocked))\n self.add_to_executed(commandbatch, clientreplies)\n\n if self.isleader and str(commandbatch.client) in self.connectionpool.poolbypeer.keys():\n self.send_replybatch_to_client(clientreplies, commandbatch)\n\n if self.nexttoexecute % GARBAGEPERIOD == 0 and self.isleader:\n mynumber = self.metacommandnumber\n self.metacommandnumber += 1\n garbagetuple = (\"_garbage_collect\", self.nexttoexecute)\n garbagecommand = Proposal(self.me, mynumber, garbagetuple)\n if self.leader_initializing:\n self.handle_client_command(garbagecommand, prepare=True)\n else:\n self.handle_client_command(garbagecommand)\n if self.debug: self.logger.write(\"State:\", \"returning from performcore!\")",
"metadata": "root.Replica.performcore_clientbatch",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 145
},
{
"content": " def performcore(self, command, dometaonly=False, designated=False):\n \"\"\"The core function that performs a given command in a slot number. It\n executes regular commands as well as META-level commands (commands related\n to the managements of the Paxos protocol) with a delay of WINDOW commands.\"\"\"\n commandtuple = command.command\n if type(commandtuple) == str:\n commandname = commandtuple\n commandargs = []\n else:\n commandname = commandtuple[0]\n commandargs = commandtuple[1:]\n ismeta = (commandname in METACOMMANDS)\n noop = (commandname == \"noop\")\n send_result_to_client = True\n if self.debug: self.logger.write(\"State:\", \"---> Command: %s DoMetaOnly: %s IsMeta: %s\"\n % (command, dometaonly, ismeta))\n # Result triple\n clientreplycode, givenresult, unblocked = (-1, None, {})\n try:\n if dometaonly and not ismeta:\n return\n elif noop:\n method = getattr(self, NOOP)\n clientreplycode = CR_OK\n givenresult = \"NOOP\"\n unblocked = {}\n send_result_to_client = False\n elif dometaonly and ismeta:\n # execute a metacommand when the window has expired\n if self.debug: self.logger.write(\"State\",\n \"commandname: %s args: %s\" %\n (commandname, str(commandargs)))\n method = getattr(self, commandname)\n clientreplycode = CR_META\n givenresult = self._apply_args_to_method(method, commandargs, command)\n unblocked = {}\n send_result_to_client = False\n elif not dometaonly and ismeta:\n # meta command, but the window has not passed yet,\n # so just mark it as executed without actually executing it\n # the real execution will take place when the window has expired\n self.add_to_executed(command, (CR_META, META, {}))\n return\n elif not dometaonly and not ismeta:\n # this is the workhorse case that executes most normal commands\n method = getattr(self.object, commandname)\n # Watch out for the lock release and acquire!\n self.lock.release()\n try:\n givenresult = self._apply_args_to_method(method, commandargs, command)\n clientreplycode = CR_OK\n send_result_to_client = True\n except BlockingReturn as blockingretexp:\n if self.debug: self.logger.write(\"State\", \"Blocking Client.\")\n givenresult = blockingretexp.returnvalue\n clientreplycode = CR_BLOCK\n send_result_to_client = True\n except UnblockingReturn as unblockingretexp:\n if self.debug: self.logger.write(\"State\", \"Unblocking Client(s).\")\n # Get the information about the method call\n # These will be used to update executed and\n # to send reply message to the caller client\n givenresult = unblockingretexp.returnvalue\n unblocked = unblockingretexp.unblocked\n clientreplycode = CR_OK\n send_result_to_client = True\n # If there are clients to be unblocked that have\n # been blocked previously, send them unblock messages\n for unblockedclientcommand in unblocked.iterkeys():\n self.send_reply_to_client(CR_UNBLOCK, None, unblockedclientcommand)\n except Exception as e:\n if self.debug: self.logger.write(\"Execution Error\",\n \"Error during method invocation: %s\" % str(e))\n givenresult = pickle.dumps(e)\n clientreplycode = CR_EXCEPTION\n send_result_to_client = True\n unblocked = {}\n self.lock.acquire()\n except (TypeError, AttributeError) as t:\n if self.debug: self.logger.write(\"Execution Error\",\n \"command not supported: %s\" % str(command))\n if self.debug: self.logger.write(\"Execution Error\", \"%s\" % str(t))\n\n self.logger.write(\"Execution Error\",\n \"command not supported: %s\" % str(command))\n self.logger.write(\"Execution Error\", \"%s\" % str(t))\n\n givenresult = 'Method Does Not Exist: ', commandname\n clientreplycode = CR_EXCEPTION\n unblocked = {}\n send_result_to_client = True\n self.add_to_executed(command, (clientreplycode,givenresult,unblocked))\n\n if commandname not in METACOMMANDS:\n # if this client contacted me for this operation, return him the response\n if send_result_to_client and self.isleader and \\\n str(command.client) in self.connectionpool.poolbypeer.keys():\n self.send_reply_to_client(clientreplycode, givenresult, command)\n\n if self.nexttoexecute % GARBAGEPERIOD == 0 and self.isleader:\n mynumber = self.metacommandnumber\n self.metacommandnumber += 1\n garbagetuple = (\"_garbage_collect\", self.nexttoexecute, self.ballotnumber)\n garbagecommand = Proposal(self.me, mynumber, garbagetuple)\n if self.leader_initializing:\n self.handle_client_command(garbagecommand, prepare=True)\n else:\n self.handle_client_command(garbagecommand)\n if self.debug: self.logger.write(\"State:\", \"returning from performcore!\")",
"metadata": "root.Replica.performcore",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 208
},
{
"content": " def send_replybatch_to_client(self, givenresult, command):\n if self.debug: self.logger.write(\"State\", \"Sending REPLY to CLIENT\")\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: givenresult,\n FLD_REPLYCODE: CR_BATCH,\n FLD_INRESPONSETO: command.clientcommandnumber})\n clientconn = self.connectionpool.get_connection_by_peer(command.client)\n if clientconn == None or clientconn.thesocket == None:\n if self.debug: self.logger.write(\"State\", \"Client connection does not exist.\")\n return\n clientconn.send(clientreply)",
"metadata": "root.Replica.send_replybatch_to_client",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 318
},
{
"content": " def send_reply_to_client(self, clientreplycode, givenresult, command):\n if self.debug: self.logger.write(\"State\", \"Sending REPLY to CLIENT\")\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: givenresult,\n FLD_REPLYCODE: clientreplycode,\n FLD_INRESPONSETO: command.clientcommandnumber})\n if self.debug: self.logger.write(\"State\", \"Clientreply: %s\" % str(clientreply))\n clientconn = self.connectionpool.get_connection_by_peer(command.client)\n if clientconn == None or clientconn.thesocket == None:\n if self.debug: self.logger.write(\"State\", \"Client connection does not exist.\")\n return\n clientconn.send(clientreply)",
"metadata": "root.Replica.send_reply_to_client",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 330
},
{
"content": " def perform(self, msg, designated=False):\n \"\"\"Take a given PERFORM message, add it to the set of decided commands,\n and call performcore to execute.\"\"\"\n if self.debug: self.logger.write(\"State:\", \"Performing msg %s\" % str(msg))\n if msg.commandnumber not in self.decisions:\n self.add_to_decisions(msg.commandnumber, msg.proposal)\n # If replica was using this commandnumber for a different proposal, initiate it again\n if msg.commandnumber in self.proposals and msg.proposal != self.proposals[msg.commandnumber]:\n self.pick_commandnumber_add_to_pending(self.proposals[msg.commandnumber])\n self.issue_pending_commands()\n\n while self.nexttoexecute in self.decisions:\n requestedcommand = self.decisions[self.nexttoexecute]\n if isinstance(requestedcommand, ProposalServerBatch):\n for command in requestedcommand.proposals:\n self.execute_command(command, msg, designated)\n else:\n self.execute_command(requestedcommand, msg, designated)\n self.nexttoexecute += 1\n # the window just got bumped by one\n # check if there are pending commands, and issue one of them\n self.issue_pending_commands()\n if self.debug: self.logger.write(\"State\", \"Returning from PERFORM!\")",
"metadata": "root.Replica.perform",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 343
},
{
"content": " def execute_command(self, requestedcommand, msg, designated):\n # commands are executed one by one here.\n if requestedcommand in self.executed:\n if self.debug: self.logger.write(\"State\", \"Previously executed command %d.\"\n % self.nexttoexecute)\n # Execute the metacommand associated with this command\n if self.nexttoexecute > WINDOW:\n if self.debug: self.logger.write(\"State\",\n \"performcore %d\" % (self.nexttoexecute-WINDOW))\n self.performcore(self.decisions[self.nexttoexecute-WINDOW], True)\n # If we are a leader, we should send a reply to the client for this command\n # in case the client didn't receive the reply from the previous leader\n if self.isleader:\n prevrcode, prevresult, prevunblocked = self.executed[requestedcommand]\n if prevrcode == CR_BLOCK:\n # As dictionary is not sorted we have to start from the beginning every time\n for resultset in self.executed.itervalues():\n if resultset[EXC_UNBLOCKED] == requestedcommand:\n # This client has been UNBLOCKED\n prevresult = None\n prevrcode = CR_UNBLOCK\n # Send a reply to the client only if there was a client\n if type(requestedcommand.command) == str:\n commandname = requestedcommand.command\n else:\n commandname = requestedcommand.command[0]\n if (commandname not in METACOMMANDS) and (commandname != 'noop'):\n if self.debug: self.logger.write(\"State\", \"Sending reply to client.\")\n self.send_reply_to_client(prevrcode, prevresult, requestedcommand)\n elif requestedcommand not in self.executed:\n if self.debug: self.logger.write(\"State\", \"executing command %s.\" % str(requestedcommand))\n # check to see if there was a metacommand precisely WINDOW commands ago\n # that should now take effect\n # We are calling performcore 2 times, the timing gets screwed plus this\n # is very unefficient\n if self.nexttoexecute > WINDOW:\n if self.debug: self.logger.write(\"State\", \"performcore %d\" % \\\n (self.nexttoexecute-WINDOW))\n if not (isinstance(self.decisions[self.nexttoexecute-WINDOW], ProposalServerBatch) or\n isinstance(self.decisions[self.nexttoexecute-WINDOW], ProposalClientBatch)):\n self.performcore(self.decisions[self.nexttoexecute-WINDOW], True,\n designated=designated)\n if self.debug: self.logger.write(\"State\", \"performcore %s\" % str(requestedcommand))\n if isinstance(requestedcommand, ProposalClientBatch):\n self.performcore_clientbatch(requestedcommand, designated=designated)\n else:\n self.performcore(requestedcommand, designated=designated)",
"metadata": "root.Replica.execute_command",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 367
},
{
"content": " def pick_commandnumber_add_to_pending(self, givenproposal):\n givencommandnumber = self.find_commandnumber()\n self.add_to_pendingcommands(givencommandnumber, givenproposal)",
"metadata": "root.Replica.pick_commandnumber_add_to_pending",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 415
},
{
"content": " def issue_next_command(self):\n if self.debug: self.logger.write(\"State\", \"Pending commands: %s\" % str(self.pendingcommands))\n if self.debug: self.logger.write(\"State\", \"Pending commandset: %s\" % str(self.pendingcommandset))\n if len(self.pendingcommands) == 0:\n return\n smallestcommandnumber = sorted(self.pendingcommands.keys())[0]\n if smallestcommandnumber in self.pendingcommands:\n if self.active:\n self.do_command_propose_from_pending(smallestcommandnumber)\n else:\n self.do_command_prepare_from_pending(smallestcommandnumber)",
"metadata": "root.Replica.issue_next_command",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 419
},
{
"content": " def issue_pending_commands(self):\n if self.debug: self.logger.write(\"State\", \"Pending commands: %s\" % str(self.pendingcommands))\n if len(self.pendingcommands) == 0:\n return\n sortedcommandnumbers = sorted(self.pendingcommands.keys())\n for smallestcommandnumber in sortedcommandnumbers:\n if self.active:\n self.do_command_propose_from_pending(smallestcommandnumber)\n else:\n self.do_command_prepare_from_pending(smallestcommandnumber)",
"metadata": "root.Replica.issue_pending_commands",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 431
},
{
"content": " def msg_perform(self, conn, msg):\n \"\"\"received a PERFORM message, perform it and send an\n UPDATE message to the source if necessary\"\"\"\n self.perform(msg)\n\n if not self.stateuptodate:\n if self.debug: self.logger.write(\"State\", \"Updating..\")\n if msg.commandnumber == 1:\n self.stateuptodate = True\n return\n updatemessage = create_message(MSG_UPDATE, self.me)\n conn.send(updatemessage)",
"metadata": "root.Replica.msg_perform",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 442
},
{
"content": " def msg_issue(self, conn, msg):\n self.issue_pending_commands()",
"metadata": "root.Replica.msg_issue",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 455
},
{
"content": " def msg_helo(self, conn, msg):\n if self.debug: self.logger.write(\"State\", \"Received HELO\")\n # This is the first other replica, it should be added by this replica\n if len(self.replicas) == 0:\n if self.debug: self.logger.write(\"State\", \"Adding the first REPLICA\")\n # Agree on adding self and the first replica:\n self.become_leader()\n # Add self\n self.replicas[self.me] = 0\n addcommand = self.create_add_command(self.me)\n self.pick_commandnumber_add_to_pending(addcommand)\n for i in range(WINDOW+3):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n self.issue_pending_commands()\n # Add replica\n addcommand = self.create_add_command(msg.source)\n self.pick_commandnumber_add_to_pending(addcommand)\n for i in range(WINDOW+3):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n self.issue_pending_commands()\n else:\n if self.isleader:\n if self.debug: self.logger.write(\"State\", \"Adding the new node\")\n addcommand = self.create_add_command(msg.source)\n self.pick_commandnumber_add_to_pending(addcommand)\n for i in range(WINDOW+3):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n self.issue_pending_commands()\n else:\n if self.debug: self.logger.write(\"State\", \"Not the leader, sending a HELOREPLY\")\n if self.debug: self.logger.write(\"State\", \"Leader is %s\" % str(self.find_leader()))\n heloreplymessage = create_message(MSG_HELOREPLY, self.me,\n {FLD_LEADER: self.find_leader()})\n conn.send(heloreplymessage)",
"metadata": "root.Replica.msg_helo",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 458
},
{
"content": " def msg_update(self, conn, msg):\n \"\"\"a replica needs to be updated on the set of past decisions, send caller's decisions\"\"\"\n # This should be done only if it has not been done recently.\n with self.recentlyupdatedpeerslock:\n if msg.source in self.recentlyupdatedpeers:\n return\n updatereplymessage = create_message(MSG_UPDATEREPLY, self.me,\n {FLD_DECISIONS: self.decisions})\n conn.send(updatereplymessage)\n with self.recentlyupdatedpeerslock:\n self.recentlyupdatedpeers.append(msg.source)",
"metadata": "root.Replica.msg_update",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 496
},
{
"content": " def msg_updatereply(self, conn, msg):\n \"\"\"merge decisions received with local decisions\"\"\"\n # If the node is already up-to-date, return.\n if self.stateuptodate:\n return\n for key,value in self.decisions.iteritems():\n if key in msg.decisions:\n assert self.decisions[key] == msg.decisions[key], \"Update Error\"\n # update decisions cumulatively\n self.decisions.update(msg.decisions)\n self.decisionset = set(self.decisions.values())\n self.usedcommandnumbers = self.usedcommandnumbers.union(set(self.decisions.keys()))\n # Execute the ones that we can execute\n while self.nexttoexecute in self.decisions:\n requestedcommand = self.decisions[self.nexttoexecute]\n if requestedcommand in self.executed:\n if self.debug: self.logger.write(\"State\",\n \"Previously executed command %d.\"\n % self.nexttoexecute)\n # Execute the metacommand associated with this command\n if self.nexttoexecute > WINDOW:\n if self.debug: self.logger.write(\"State\",\n \"performcore %d\"\n % (self.nexttoexecute-WINDOW))\n self.performcore(self.decisions[self.nexttoexecute-WINDOW], True)\n self.nexttoexecute += 1\n elif requestedcommand not in self.executed:\n if self.debug: self.logger.write(\"State\", \"executing command %d.\" % self.nexttoexecute)\n\n if self.nexttoexecute > WINDOW:\n if self.debug: self.logger.write(\"State\", \"performcore %d\" % \\\n (self.nexttoexecute-WINDOW))\n self.performcore(self.decisions[self.nexttoexecute-WINDOW], True)\n if self.debug: self.logger.write(\"State\", \"performcore %d\" % self.nexttoexecute)\n self.performcore(self.decisions[self.nexttoexecute])\n self.nexttoexecute += 1\n # the window got bumped\n # check if there are pending commands, and issue one of them\n self.issue_pending_commands()\n if self.debug: self.logger.write(\"State\", \"Update is done!\")\n self.stateuptodate = True",
"metadata": "root.Replica.msg_updatereply",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 508
},
{
"content": " def do_noop(self):\n if self.debug: self.logger.write(\"State:\", \"doing noop!\")",
"metadata": "root.Replica.do_noop",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 550
},
{
"content": " def _add_node(self, nodetype, nodename, epoch):\n nodetype = int(nodetype)\n if self.debug: self.logger.write(\"State\", \"Adding node: %s %s\" % (node_names[nodetype],\n nodename))\n ipaddr,port = nodename.split(\":\")\n nodepeer = Peer(ipaddr,int(port),nodetype)\n self.replicas[nodepeer] = 0\n\n # update the revision if nameserver\n if self.isnameserver:\n self.nameserver.update()\n\n # if leader, increment epoch in the ballotnumber\n temp = (self.ballotnumber[BALLOTEPOCH]+1,\n self.ballotnumber[BALLOTNO],\n self.ballotnumber[BALLOTNODE])\n if self.debug: self.logger.write(\"State:\", \"Incremented EPOCH: %s\" % str(temp))\n self.ballotnumber = temp\n\n # check leadership state\n if self.stateuptodate:\n chosenleader = self.find_leader()\n if chosenleader == self.me and not self.isleader:\n # become the leader\n if not self.stateuptodate:\n self.leader_initializing = True\n self.become_leader()\n elif chosenleader != self.me and self.isleader:\n # unbecome the leader\n self.unbecome_leader()",
"metadata": "root.Replica._add_node",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 553
},
{
"content": " def _del_node(self, nodetype, nodename, epoch):\n nodetype = int(nodetype)\n if self.debug: self.logger.write(\"State\",\n \"Deleting node: %s %s\" % (node_names[nodetype], nodename))\n ipaddr,port = nodename.split(\":\")\n nodepeer = Peer(ipaddr,int(port),nodetype)\n try:\n del self.replicas[nodepeer]\n except KeyError:\n if self.debug: self.logger.write(\"State\",\n \"Cannot delete node that is not in the view: %s %s\"\n % (node_names[nodetype], nodename))\n # remove the node from nodesbeingdeleted\n if nodepeer in self.nodesbeingdeleted:\n self.nodesbeingdeleted.remove(nodepeer)\n\n # update the revision if nameserver\n if self.isnameserver:\n self.nameserver.update()\n\n # if leader, increment epoch in the ballotnumber\n temp = (self.ballotnumber[BALLOTEPOCH]+1,\n self.ballotnumber[BALLOTNO],\n self.ballotnumber[BALLOTNODE])\n if self.debug: self.logger.write(\"State:\", \"Incremented EPOCH: %s\" % str(temp))\n self.ballotnumber = temp\n\n # if deleted node is a replica and this replica is uptodate\n # check leadership state\n if self.stateuptodate:\n chosenleader = self.find_leader()\n if chosenleader == self.me and not self.isleader:\n # become the leader\n if not self.stateuptodate:\n self.leader_initializing = True\n self.become_leader()\n elif chosenleader != self.me and self.isleader:\n # unbecome the leader\n self.unbecome_leader()\n\n # if deleted node is self and the node is not just replaying history\n if nodepeer == self.me:\n if self.debug: self.logger.write(\"State\", \"I have been deleted from the view.\")\n self._rejoin()",
"metadata": "root.Replica._del_node",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 584
},
{
"content": " def _garbage_collect(self, garbagecommandnumber, epoch):\n \"\"\" garbage collect \"\"\"\n if self.debug: self.logger.write(\"State\",\n \"Initiating garbage collection upto cmd#%d\"\n % garbagecommandnumber)\n snapshot = pickle.dumps(self.object)\n garbagemsg = create_message(MSG_GARBAGECOLLECT, self.me,\n {FLD_COMMANDNUMBER: garbagecommandnumber,\n FLD_SNAPSHOT: snapshot})\n self.send(garbagemsg,group=self.replicas)\n # do local garbage collection\n self.local_garbage_collect(garbagecommandnumber)",
"metadata": "root.Replica._garbage_collect",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 629
},
{
"content": " def local_garbage_collect(self, commandnumber):\n \"\"\"\n Truncates decisions, executed and proposals\n up to given commandnumber\n \"\"\"\n keys = sorted(self.decisions.keys())\n # Sanity checking\n lastkey = keys[0]\n candelete = True\n for cmdno in keys:\n if cmdno == lastkey:\n lastkey += 1\n else:\n candelete = False\n break\n # Truncating\n if not candelete:\n return False\n for cmdno in keys:\n if cmdno < commandnumber:\n if self.decisions[cmdno] in self.executed:\n del self.executed[self.decisions[cmdno]]\n try:\n del self.proposals[cmdno]\n except:\n pass\n #del self.decisions[cmdno]\n else:\n break\n return True",
"metadata": "root.Replica.local_garbage_collect",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 642
},
{
"content": " def become_leader(self):\n \"\"\"Leader State\n - active: indicates if the Leader has a *good* ballotnumber\n - ballotnumber: the highest ballotnumber Leader has used\n - outstandingprepares: ResponseCollector dictionary for MSG_PREPARE,\n indexed by ballotnumber\n - outstandingproposes: ResponseCollector dictionary for MSG_PROPOSE,\n indexed by commandnumber\n - receivedclientrequests: commands received from clients as\n <(client,clientcommandnumber):command> mappings\n - backoff: backoff amount that is used to determine how much a leader should\n backoff during a collusion\n - commandgap: next commandnumber that will be used by this leader\n \"\"\"\n if not self.isleader:\n self.isleader = True\n self.active = False\n self.outstandingprepares = {}\n self.outstandingproposes = {}\n self.receivedclientrequests = {}\n self.backoff = 0\n self.commandgap = 1\n self.leader_initializing = True\n\n backoff_thread = Thread(target=self.update_backoff)\n backoff_event.clear()\n backoff_thread.start()\n if self.debug: self.logger.write(\"State\", \"Becoming LEADER!\")",
"metadata": "root.Replica.become_leader",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 674
},
{
"content": " def unbecome_leader(self):\n \"\"\"drop LEADER state, become a replica\"\"\"\n # fail-stop tolerance, coupled with retries in the client, mean that a\n # leader can at any time discard all of its internal state and the protocol\n # will still work correctly.\n if self.debug: self.logger.write(\"State:\", \"Unbecoming LEADER!\")\n self.isleader = False\n backoff_event.set()",
"metadata": "root.Replica.unbecome_leader",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 703
},
{
"content": " def update_backoff(self):\n \"\"\"used by the backoffthread to decrease the backoff amount by half periodically\"\"\"\n while not backoff_event.isSet():\n self.backoff = self.backoff/2\n backoff_event.wait(BACKOFFDECREASETIMEOUT)",
"metadata": "root.Replica.update_backoff",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 712
},
{
"content": " def detect_colliding_leader(self, ballotnumber):\n \"\"\"detects a colliding leader from the highest ballotnumber received from replicas\"\"\"\n otherleader_addr,otherleader_port = ballotnumber[BALLOTNODE].split(\":\")\n otherleader = Peer(otherleader_addr, int(otherleader_port), NODE_REPLICA)\n return otherleader",
"metadata": "root.Replica.detect_colliding_leader",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 718
},
{
"content": " def leader_is_alive(self):\n \"\"\"returns a tuple if the leader is alive and the currentleader\"\"\"\n currentleader = self.find_leader()\n if currentleader != self.me:\n if self.debug: self.logger.write(\"State\", \"Sending PING to %s\" % str(currentleader))\n pingmessage = create_message(MSG_PING, self.me)\n successid = self.send(pingmessage, peer=currentleader)\n if successid < 0:\n self.replicas[currentleader] += 1\n return False, currentleader\n return True, currentleader",
"metadata": "root.Replica.leader_is_alive",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 724
},
{
"content": " def find_leader(self):\n \"\"\"returns the minimum peer that is alive as the leader\"\"\"\n # sort the replicas first\n replicas = sorted(self.replicas.items(), key=lambda t: t[0])\n if self.debug: self.logger.write(\"State\", \"All Replicas in my view:%s\" %str(replicas))\n for (replica,liveness) in replicas:\n if liveness == 0:\n del replicas\n if self.debug: self.logger.write(\"State\", \"Leader is %s\" %str(replica))\n return replica\n del replicas\n if self.debug: self.logger.write(\"State\", \"Leader is me\")\n return self.me",
"metadata": "root.Replica.find_leader",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 736
},
{
"content": " def update_ballotnumber(self, seedballotnumber):\n \"\"\"update the ballotnumber with a higher value than the given ballotnumber\"\"\"\n assert seedballotnumber[BALLOTEPOCH] == self.ballotnumber[BALLOTEPOCH], \\\n \"%s is in epoch %d instead of %d\" % \\\n (str(self.me), seedballotnumber[BALLOTEPOCH], self.ballotnumber[BALLOTEPOCH])\n temp = (self.ballotnumber[BALLOTEPOCH],\n seedballotnumber[BALLOTNO]+1,\n self.ballotnumber[BALLOTNODE])\n if self.debug: self.logger.write(\"State:\", \"Updated ballotnumber to %s\" % str(temp))\n self.ballotnumber = temp",
"metadata": "root.Replica.update_ballotnumber",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 750
},
{
"content": " def find_commandnumber(self):\n \"\"\"returns the first gap in proposals and decisions combined\"\"\"\n while self.commandgap <= len(self.usedcommandnumbers):\n if self.commandgap in self.usedcommandnumbers:\n self.commandgap += 1\n else:\n if self.debug: self.logger.write(\"State\", \"Picked command number: %d\" % self.commandgap)\n self.usedcommandnumbers.add(self.commandgap)\n return self.commandgap\n if self.debug: self.logger.write(\"State\", \"Picked command number: %d\" % self.commandgap)\n self.usedcommandnumbers.add(self.commandgap)\n return self.commandgap",
"metadata": "root.Replica.find_commandnumber",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 761
},
{
"content": " def add_to_executed(self, key, value):\n self.executed[key] = value",
"metadata": "root.Replica.add_to_executed",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 774
},
{
"content": " def add_to_decisions(self, key, value):\n self.decisions[key] = value\n if isinstance(value, ProposalServerBatch):\n for item in value.proposals:\n self.decisionset.add(item)\n else:\n self.decisionset.add(value)\n self.usedcommandnumbers.add(key)",
"metadata": "root.Replica.add_to_decisions",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 777
},
{
"content": " def add_to_proposals(self, key, value):\n self.proposals[key] = value\n if isinstance(value, ProposalServerBatch):\n for item in value.proposals:\n self.proposalset.add(item)\n else:\n self.proposalset.add(value)\n self.usedcommandnumbers.add(key)",
"metadata": "root.Replica.add_to_proposals",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 786
},
{
"content": " def add_to_pendingcommands(self, key, value):\n # If a Replica adds a pendingcommand before it is up to date\n # it assigns 1 as a commandnumber for a command. This later\n # gets overwritten when the same command is added later with\n # a higher commandnumber in the pendingcommandset but not in\n # in the pendingcommands as they have different keys. The case\n # that causes this to happen should be prevented, adding an if\n # case in this function will not fix the logic, will just get rid\n # of the symptom.\n self.pendingcommands[key] = value\n if isinstance(value, ProposalServerBatch):\n for item in value.proposals:\n self.pendingcommandset.add(item)\n else:\n self.pendingcommandset.add(value)",
"metadata": "root.Replica.add_to_pendingcommands",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 795
},
{
"content": " def remove_from_executed(self, key):\n del self.executed[key]",
"metadata": "root.Replica.remove_from_executed",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 811
},
{
"content": " def remove_from_decisions(self, key):\n value = self.decisions[key]\n if isinstance(value, ProposalServerBatch):\n for item in value.proposals:\n self.decisionset.remove(item)\n else:\n self.decisionset.remove(value)\n del self.decisions[key]\n self.usedcommandnumbers.remove(key)\n self.commandgap = key",
"metadata": "root.Replica.remove_from_decisions",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 814
},
{
"content": " def remove_from_proposals(self, key):\n value = self.proposals[key]\n if isinstance(value, ProposalServerBatch):\n for item in value.proposals:\n self.proposalset.remove(item)\n else:\n self.proposalset.remove(value)\n del self.proposals[key]\n self.usedcommandnumbers.remove(key)\n self.commandgap = key",
"metadata": "root.Replica.remove_from_proposals",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 825
},
{
"content": " def remove_from_pendingcommands(self, key):\n value = self.pendingcommands[key]\n if isinstance(value, ProposalServerBatch):\n for item in value.proposals:\n self.pendingcommandset.remove(item)\n else:\n self.pendingcommandset.remove(value)\n del self.pendingcommands[key]",
"metadata": "root.Replica.remove_from_pendingcommands",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 836
},
{
"content": " def handle_client_command(self, givencommand, sendcount=1, prepare=False):\n \"\"\"handle received command\n - if it has been received before check if it has been executed\n -- if it has been executed send the result\n -- if it has not been executed yet send INPROGRESS\n - if this request has not been received before initiate a Paxos round for the command\"\"\"\n if not self.isleader:\n if self.debug: self.logger.write(\"Error\", \"Should not have come here: Called to handle client command but not Leader.\")\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: '',\n FLD_REPLYCODE: CR_REJECTED,\n FLD_INRESPONSETO: givencommand.clientcommandnumber})\n if self.debug: self.logger.write(\"State\", \"Rejecting clientrequest: %s\" % str(clientreply))\n conn = self.connectionpool.get_connection_by_peer(givencommand.client)\n if conn is not None:\n conn.send(clientreply)\n else:\n if self.debug: self.logger.write(\"Error\", \"Cannot create connection to client\")\n return\n\n if sendcount > 0 and (givencommand.client,\n givencommand.clientcommandnumber) in self.receivedclientrequests:\n if self.debug: self.logger.write(\"State\", \"Client request received previously:\")\n if self.debug: self.logger.write(\"State\", \"Client: %s Commandnumber: %s Replicas: %s\"\n % (str(givencommand.client),\n str(givencommand.clientcommandnumber),\n str(self.replicas)))\n # Check if the request has been executed\n if givencommand in self.executed:\n # send REPLY\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: self.executed[givencommand][EXC_RESULT],\n FLD_REPLYCODE: self.executed[givencommand][EXC_RCODE],\n FLD_INRESPONSETO: givencommand.clientcommandnumber})\n if self.debug: self.logger.write(\"State\", \"Sending Clientreply: %s\" % str(clientreply))\n # Check if the request is somewhere in the Paxos pipeline\n elif givencommand in self.pendingcommandset or \\\n givencommand in self.proposalset or \\\n givencommand in self.decisionset:\n # send INPROGRESS\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: '',\n FLD_REPLYCODE: CR_INPROGRESS,\n FLD_INRESPONSETO: givencommand.clientcommandnumber})\n if self.debug: self.logger.write(\"State\", \"Sending INPROGRESS: %s\\nReplicas: %s\"\n % (str(clientreply),str(self.replicas)))\n conn = self.connectionpool.get_connection_by_peer(givencommand.client)\n if conn is not None:\n conn.send(clientreply)\n else:\n if self.debug: self.logger.write(\"Error\", \"Cannot create connection to client\")\n else:\n # The caller haven't received this command before\n self.receivedclientrequests[(givencommand.client,\n givencommand.clientcommandnumber)] = givencommand\n if self.debug: self.logger.write(\"State\",\n \"Initiating command. Leader is active: %s\" % self.active)\n self.pick_commandnumber_add_to_pending(givencommand)\n self.issue_pending_commands()",
"metadata": "root.Replica.handle_client_command",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 845
},
{
"content": " def handle_client_command_batch(self, msgconnlist, prepare=False):\n \"\"\"handle received command\n - if it has been received before check if it has been executed\n -- if it has been executed send the result\n -- if it has not been executed yet send INPROGRESS\n - if this request has not been received before initiate a Paxos round for the command\"\"\"\n if not self.isleader:\n if self.debug: self.logger.write(\"Error\",\n \"Should not have come here: Not Leader.\")\n for (msg,conn) in msgconnlist:\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: '',\n FLD_REPLYCODE: CR_REJECTED,\n FLD_INRESPONSETO: msg.command.clientcommandnumber})\n conn.send(clientreply)\n return\n\n clientreply = None\n commandstohandle = []\n for (msg,conn) in msgconnlist:\n if msg.sendcount == 0:\n # The caller haven't received this command before\n self.receivedclientrequests[(msg.command.client,\n msg.command.clientcommandnumber)] = msg.command\n commandstohandle.append(msg.command)\n continue\n if (msg.command.client, msg.command.clientcommandnumber) in self.receivedclientrequests:\n if self.debug: self.logger.write(\"State\", \"Client request received previously:\")\n # Check if the request has been executed\n if msg.command in self.executed:\n # send REPLY\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: self.executed[msg.command][EXC_RESULT],\n FLD_REPLYCODE: self.executed[msg.command][EXC_RCODE],\n FLD_INRESPONSETO: msg.command.clientcommandnumber})\n if self.debug: self.logger.write(\"State\", \"Clientreply: %s\" % str(clientreply))\n # Check if the request is somewhere in the Paxos pipeline\n elif msg.command in self.pendingcommandset or msg.command in self.proposalset \\\n or msg.command in self.decisionset:\n # send INPROGRESS\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: '',\n FLD_REPLYCODE: CR_INPROGRESS,\n FLD_INRESPONSETO: msg.command.clientcommandnumber})\n if self.debug: self.logger.write(\"State\", \"Clientreply: %s\\nReplicas: %s\"\n % (str(clientreply),str(self.replicas)))\n if clientreply:\n conn.send(clientreply)\n if self.debug: self.logger.write(\"State\", \"Initiating a new command. Leader is active: %s\" % self.active)\n # Check if batching is still required\n if len(commandstohandle) == 0:\n return\n elif len(commandstohandle) == 1:\n self.pick_commandnumber_add_to_pending(commandstohandle[0])\n else:\n self.pick_commandnumber_add_to_pending(ProposalServerBatch(commandstohandle))\n self.issue_pending_commands()",
"metadata": "root.Replica.handle_client_command_batch",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 905
},
{
"content": " def send_reject_to_client(self, conn, clientcommandnumber):\n conn.send(create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: '',\n FLD_REPLYCODE: CR_REJECTED,\n FLD_INRESPONSETO: clientcommandnumber}))",
"metadata": "root.Replica.send_reject_to_client",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 963
},
{
"content": " def msg_clientbatch(self, conn, msg):\n self.msg_clientrequest(conn, msg)",
"metadata": "root.Replica.msg_clientbatch",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 968
},
{
"content": " def msg_clientrequest(self, conn, msg):\n \"\"\"called holding self.lock\n handles clientrequest message received according to replica's state\n - if not leader: reject\n - if leader: add connection to client connections and handle request\"\"\"\n if len(self.replicas) == 0:\n if self.debug: self.logger.write(\"State\", \"Adding SELF\")\n # Agree on adding self and the first replica:\n self.become_leader()\n # Add self\n self.replicas[self.me] = 0\n addcommand = self.create_add_command(self.me)\n self.pick_commandnumber_add_to_pending(addcommand)\n for i in range(WINDOW+3):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n self.issue_pending_commands()\n return\n if not self.stateuptodate:\n return\n if self.isleader:\n # if leader, handle the clientrequest\n if self.token and msg.token != self.token:\n if self.debug: self.logger.write(\"Error\", \"Security Token mismatch.\")\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n else:\n if self.debug: self.logger.write(\"State\", \"I'm the leader, handling the request.\")\n self.handle_client_command(msg.command, msg.sendcount,\n prepare=self.leader_initializing)\n else:\n leaderalive, leader = self.leader_is_alive()\n if leaderalive and leader != self.me:\n if self.debug: self.logger.write(\"State\", \"Not Leader: Rejecting CLIENTREQUEST\")\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n elif leader == self.me:\n # check if should become leader\n self.become_leader()\n if self.token and msg.token != self.token:\n if self.debug: self.logger.write(\"Error\", \"Security Token mismatch.\")\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n else:\n self.handle_client_command(msg.command, msg.sendcount,\n prepare=self.leader_initializing)\n elif not leaderalive and self.find_leader() == self.me:\n # check if should become leader\n self.become_leader()\n if leader not in self.nodesbeingdeleted and leader in self.replicas:\n # if leader is not already (being) deleted\n # take old leader out of the configuration\n if self.debug: self.logger.write(\"State\",\n \"Taking old leader out of the configuration.\")\n self.nodesbeingdeleted.add(leader)\n delcommand = self.create_delete_command(leader)\n self.pick_commandnumber_add_to_pending(delcommand)\n for i in range(WINDOW):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n self.issue_pending_commands()\n # Check token and answer to client\n if self.token and msg.token != self.token:\n if self.debug: self.logger.write(\"Error\", \"Security Token mismatch.\")\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n else:\n self.handle_client_command(msg.command, msg.sendcount,\n prepare=self.leader_initializing)",
"metadata": "root.Replica.msg_clientrequest",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 971
},
{
"content": " def msg_clientrequest_batch(self, msgconnlist):\n \"\"\"called holding self.lock\n handles clientrequest messages that are batched together\"\"\"\n if len(self.replicas) == 0:\n if self.debug: self.logger.write(\"State\", \"Adding SELF\")\n # Agree on adding self and the first replica:\n self.become_leader()\n # Add self\n self.replicas[self.me] = 0\n addcommand = self.create_add_command(self.me)\n self.pick_commandnumber_add_to_pending(addcommand)\n for i in range(WINDOW+3):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n self.issue_pending_commands()\n return\n if not self.stateuptodate:\n return\n if self.isleader:\n # if leader, handle the clientrequest\n for (msg,conn) in msgconnlist:\n if self.token and msg.token != self.token:\n if self.debug: self.logger.write(\"Error\", \"Security Token mismatch.\")\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n msgconnlist.remove((msg,conn))\n self.handle_client_command_batch(msgconnlist, prepare=self.leader_initializing)\n else:\n leaderalive, leader = self.leader_is_alive()\n if leaderalive and leader != self.me:\n if self.debug: self.logger.write(\"State\", \"Not Leader: Rejecting all CLIENTREQUESTS\")\n for (msg,conn) in msgconnlist:\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n elif leader == self.me:\n # check if should become leader\n self.become_leader()\n for (msg,conn) in msgconnlist:\n if self.token and msg.token != self.token:\n if self.debug: self.logger.write(\"Error\", \"Security Token mismatch.\")\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n msgconnlist.remove((msg,conn))\n self.handle_client_command_batch(msgconnlist, prepare=self.leader_initializing)\n elif not leaderalive and self.find_leader() == self.me:\n self.become_leader()\n\n if leader not in self.nodesbeingdeleted and leader in self.replicas:\n # if leader is not already (being) deleted\n # take old leader out of the configuration\n if self.debug: self.logger.write(\"State\",\n \"Taking old leader out of the configuration.\")\n self.nodesbeingdeleted.add(leader)\n delcommand = self.create_delete_command(leader)\n self.pick_commandnumber_add_to_pending(delcommand)\n for i in range(WINDOW):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n # Check token and answer to client\n for (msg,conn) in msgconnlist:\n if self.token and msg.token != self.token:\n if self.debug: self.logger.write(\"Error\", \"Security Token mismatch.\")\n self.send_reject_to_client(conn, msg.command.clientcommandnumber)\n msgconnlist.remove((msg,conn))\n self.handle_client_command_batch(msgconnlist, prepare=self.leader_initializing)",
"metadata": "root.Replica.msg_clientrequest_batch",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1037
},
{
"content": " def msg_clientreply(self, conn, msg):\n \"\"\"this only occurs in response to commands initiated by the shell\"\"\"\n return",
"metadata": "root.Replica.msg_clientreply",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1100
},
{
"content": " def do_command_propose_from_pending(self, givencommandnumber):\n \"\"\"Initiates givencommandnumber from pendingcommands list.\n Stage p2a.\n - Remove command from pending and transfer it to proposals\n - If no Replicas, retreat and return\n - Else start from the PROPOSE STAGE:\n -- create MSG_PROPOSE: message carries ballotnumber, commandnumber, proposal\n -- create ResponseCollector object for PROPOSE STAGE:\n ResponseCollector keeps the state related to MSG_PROPOSE\n -- add the ResponseCollector to the outstanding propose set\n -- send MSG_PROPOSE to Replica nodes\n \"\"\"\n givenproposal = self.pendingcommands[givencommandnumber]\n self.remove_from_pendingcommands(givencommandnumber)\n self.add_to_proposals(givencommandnumber, givenproposal)\n recentballotnumber = self.ballotnumber\n if self.debug: self.logger.write(\"State\", \"Proposing command: %d:%s with ballotnumber %s\"\n % (givencommandnumber,givenproposal,str(recentballotnumber)))\n # Since we never propose a commandnumber that is beyond the window,\n # we can simply use the current replica set here\n prc = ResponseCollector(self.replicas, recentballotnumber,\n givencommandnumber, givenproposal)\n if len(prc.quorum) == 0:\n if self.debug: self.logger.write(\"Error\", \"There are no Replicas, returning!\")\n self.remove_from_proposals(givencommandnumber)\n self.pick_commandnumber_add_to_pending(givenproposal)\n return\n self.outstandingproposes[givencommandnumber] = prc\n propose = create_message(MSG_PROPOSE, self.me,\n {FLD_BALLOTNUMBER: recentballotnumber,\n FLD_COMMANDNUMBER: givencommandnumber,\n FLD_PROPOSAL: givenproposal,\n FLD_SERVERBATCH: isinstance(givenproposal, ProposalServerBatch)})\n self.send(propose, group=prc.quorum)",
"metadata": "root.Replica.do_command_propose_from_pending",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1105
},
{
"content": " def do_command_prepare_from_pending(self, givencommandnumber):\n \"\"\"Initiates givencommandnumber from pendingcommands list.\n Stage p1a.\n - Remove command from pending and transfer it to proposals\n - If no Replicas, retreat and return\n - Else start from the PREPARE STAGE:\n -- create MSG_PREPARE: message carries the corresponding ballotnumber\n -- create ResponseCollector object for PREPARE STAGE:\n ResponseCollector keeps the state related to MSG_PREPARE\n -- add the ResponseCollector to the outstanding prepare set\n -- send MSG_PREPARE to Replica nodes\n \"\"\"\n givenproposal = self.pendingcommands[givencommandnumber]\n self.remove_from_pendingcommands(givencommandnumber)\n self.add_to_proposals(givencommandnumber, givenproposal)\n newballotnumber = self.ballotnumber\n if self.debug: self.logger.write(\"State\", \"Preparing command: %d:%s with ballotnumber %s\"\n % (givencommandnumber, givenproposal,str(newballotnumber)))\n prc = ResponseCollector(self.replicas, newballotnumber,\n givencommandnumber, givenproposal)\n if len(prc.quorum) == 0:\n if self.debug: self.logger.write(\"Error\", \"There are no Replicas, returning!\")\n self.remove_from_proposals(givencommandnumber)\n self.pick_commandnumber_add_to_pending(givenproposal)\n return\n self.outstandingprepares[newballotnumber] = prc\n prepare = create_message(MSG_PREPARE, self.me,\n {FLD_BALLOTNUMBER: newballotnumber})\n self.send(prepare, group=prc.quorum)",
"metadata": "root.Replica.do_command_prepare_from_pending",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1140
},
{
"content": " def msg_prepare(self, conn, msg):\n \"\"\"\n MSG_PREPARE is accepted only if it carries a ballotnumber greater\n than the highest ballotnumber Replica has ever received.\n\n Replies:\n - MSG_PREPARE_ADOPTED carries the ballotnumber that is received and\n all pvalues accepted thus far.\n - MSG_PREPARE_PREEMPTED carries the highest ballotnumber Replica\n has seen and all pvalues accepted thus far.\n \"\"\"\n # this ballot should be strictly higher than previously accepted ballots\n if msg.ballotnumber >= self.quorumballotnumber:\n if self.debug: self.logger.write(\"Paxos State\",\n \"prepare received with acceptable ballotnumber %s\"\n % str(msg.ballotnumber))\n\n self.quorumballotnumber = msg.ballotnumber\n self.last_accept_msg_id = msg.id\n replymsg = create_message(MSG_PREPARE_ADOPTED, self.me,\n {FLD_BALLOTNUMBER: self.quorumballotnumber,\n FLD_INRESPONSETO: msg.ballotnumber,\n FLD_PVALUESET: self.quorumaccepted.pvalues})\n st = 'ADOPTED'\n # or else it should be a precise duplicate of the last request\n # in this case we do nothing\n elif msg.ballotnumber == self.quorumballotnumber and \\\n msg.id == self.last_accept_msg_id:\n if self.debug: self.logger.write(\"Paxos State\",\"message received before: %s\" % msg)\n return\n else:\n if self.debug: self.logger.write(\"Paxos State\",\n (\"prepare received with non-acceptable \"\n \"ballotnumber %s \") % (str(msg.ballotnumber),))\n self.last_accept_msg_id = msg.id\n replymsg = create_message(MSG_PREPARE_PREEMPTED, self.me,\n {FLD_BALLOTNUMBER: self.quorumballotnumber,\n FLD_INRESPONSETO: msg.ballotnumber,\n FLD_PVALUESET: self.quorumaccepted.pvalues})\n st = 'PREEMPTED'\n if self.debug: self.logger.write(\"Paxos State\", \"Prepare responding %s with %s to %s\"\n % (st, str(self.quorumballotnumber), str(msg.ballotnumber)))\n conn.send(replymsg)",
"metadata": "root.Replica.msg_prepare",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1171
},
{
"content": " def msg_propose(self, conn, msg):\n \"\"\"\n MSG_PROPOSE is accepted only if it carries a ballotnumber greater\n than the highest ballotnumber Replica has received.\n\n Replies:\n - MSG_PROPOSE_ACCEPT carries ballotnumber and commandnumber received.\n - MSG_PROPOSE_REJECT carries the highest ballotnumber Replica has\n seen and the commandnumber that is received.\n \"\"\"\n if msg.ballotnumber >= self.quorumballotnumber:\n if self.debug: self.logger.write(\"Paxos State\",\n \"propose received with acceptable ballotnumber %s\"\n % str(msg.ballotnumber))\n self.quorumballotnumber = msg.ballotnumber\n newpvalue = PValue(msg.ballotnumber,msg.commandnumber,msg.proposal)\n self.quorumaccepted.add(newpvalue)\n replymsg = create_message(MSG_PROPOSE_ACCEPT, self.me,\n {FLD_BALLOTNUMBER: self.quorumballotnumber,\n FLD_INRESPONSETO: msg.ballotnumber,\n FLD_COMMANDNUMBER: msg.commandnumber})\n conn.send(replymsg)\n if self.durable:\n self.file.write(str(newpvalue))\n os.fsync(self.file)\n else:\n if self.debug: self.logger.write(\"Paxos State\",\n \"propose received with non-acceptable ballotnumber %s\"\n % str(msg.ballotnumber))\n replymsg = create_message(MSG_PROPOSE_REJECT, self.me,\n {FLD_BALLOTNUMBER: self.quorumballotnumber,\n FLD_INRESPONSETO: msg.ballotnumber,\n FLD_COMMANDNUMBER: msg.commandnumber})\n conn.send(replymsg)",
"metadata": "root.Replica.msg_propose",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1215
},
{
"content": " def msg_garbagecollect(self, conn, msg):\n if self.debug: self.logger.write(\"Paxos State\",\n \"Doing garbage collection upto %d\" % msg.commandnumber)\n success = self.quorumaccepted.truncateto(msg.commandnumber)\n if success:\n self.objectsnapshot = (msg.commandnumber,pickle.loads(msg.snapshot))\n else:\n if self.debug: self.logger.write(\"Garbage Collection Error\",\n \"Garbege Collection failed.\")",
"metadata": "root.Replica.msg_garbagecollect",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1250
},
{
"content": " def msg_prepare_adopted(self, conn, msg):\n \"\"\"MSG_PREPARE_ADOPTED is handled only if it belongs to an outstanding MSG_PREPARE,\n otherwise it is discarded.\n When MSG_PREPARE_ADOPTED is received, the corresponding ResponseCollector is retrieved\n and its state is updated accordingly.\n\n State Updates:\n - message is added to the received dictionary\n - the pvalue with the ResponseCollector's commandnumber is added to the possiblepvalueset\n - if naccepts is greater than the quorum size PREPARE STAGE is successful.\n -- Start the PROPOSE STAGE:\n --- create the pvalueset with highest ballotnumbers for distinctive commandnumbers\n --- update own proposals dictionary according to pmax dictionary\n --- remove the old ResponseCollector from the outstanding prepare set\n --- run the PROPOSE STAGE for each pvalue in proposals dictionary\n ---- create ResponseCollector object for PROPOSE STAGE: ResponseCollector keeps\n the state related to MSG_PROPOSE\n ---- add the new ResponseCollector to the outstanding propose set\n ---- create MSG_PROPOSE: message carries the corresponding ballotnumber, commandnumber and the proposal\n ---- send MSG_PROPOSE to the same Replica nodes from the PREPARE STAGE\n \"\"\"\n if msg.inresponseto in self.outstandingprepares:\n prc = self.outstandingprepares[msg.inresponseto]\n prc.receivedcount += 1\n prc.receivedfrom.add(conn.peerid)\n if self.debug: self.logger.write(\"Paxos State\",\n \"got an accept for ballotno %s \"\\\n \"commandno %s proposal %s with %d/%d\"\\\n % (prc.ballotnumber, prc.commandnumber, prc.proposal,\n prc.receivedcount, prc.ntotal))\n assert msg.ballotnumber == prc.ballotnumber, \"[%s] MSG_PREPARE_ADOPTED cannot have non-matching ballotnumber\" % self\n # add all the p-values from the response to the possiblepvalueset\n if msg.pvalueset is not None:\n prc.possiblepvalueset.union(msg.pvalueset)\n\n if prc.receivedcount >= prc.nquorum:\n if self.debug: self.logger.write(\"Paxos State\", \"suffiently many accepts on prepare!\")\n # take this response collector out of the outstanding prepare set\n del self.outstandingprepares[msg.inresponseto]\n # choose pvalues with distinctive commandnumbers and highest ballotnumbers\n pmaxset = prc.possiblepvalueset.pmax()\n for commandnumber,proposal in pmaxset.iteritems():\n self.add_to_proposals(commandnumber, proposal)\n # If the commandnumber we were planning to use is overwritten\n # we should try proposing with a new commandnumber\n if self.proposals[prc.commandnumber] != prc.proposal:\n self.pick_commandnumber_add_to_pending(prc.proposal)\n self.issue_pending_commands()\n for chosencommandnumber,chosenproposal in self.proposals.iteritems():\n # send proposals for every outstanding proposal that is collected\n if self.debug: self.logger.write(\"Paxos State\", \"Sending PROPOSE for %d, %s\"\n % (chosencommandnumber, chosenproposal))\n newprc = ResponseCollector(prc.quorum, prc.ballotnumber,\n chosencommandnumber, chosenproposal)\n self.outstandingproposes[chosencommandnumber] = newprc\n propose = create_message(MSG_PROPOSE, self.me,\n {FLD_BALLOTNUMBER: prc.ballotnumber,\n FLD_COMMANDNUMBER: chosencommandnumber,\n FLD_PROPOSAL: chosenproposal,\n FLD_SERVERBATCH: isinstance(chosenproposal,\n ProposalServerBatch)})\n self.send(propose, group=newprc.quorum)\n # As leader collected all proposals its state is up-to-date\n # and it is done initializing\n self.leader_initializing = False\n self.stateuptodate = True\n # become active\n self.active = True",
"metadata": "root.Replica.msg_prepare_adopted",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1261
},
{
"content": " def msg_prepare_preempted(self, conn, msg):\n \"\"\"MSG_PREPARE_PREEMPTED is handled only if it belongs to an outstanding MSG_PREPARE,\n otherwise it is discarded.\n A MSG_PREPARE_PREEMPTED causes the PREPARE STAGE to be unsuccessful, hence the current\n state is deleted and a ne PREPARE STAGE is initialized.\n\n State Updates:\n - kill the PREPARE STAGE that received a MSG_PREPARE_PREEMPTED\n -- remove the old ResponseCollector from the outstanding prepare set\n - remove the command from proposals, add it to pendingcommands\n - update the ballotnumber\n - initiate command\n \"\"\"\n if msg.inresponseto in self.outstandingprepares:\n prc = self.outstandingprepares[msg.inresponseto]\n if self.debug: self.logger.write(\"Paxos State\",\n \"got a reject for ballotno %s proposal %s with %d/%d\"\n % (prc.ballotnumber, prc.proposal,\n prc.receivedcount, prc.ntotal))\n # take this response collector out of the outstanding prepare set\n del self.outstandingprepares[msg.inresponseto]\n # become inactive\n self.active = False\n # handle reject\n self._handlereject(msg, prc)",
"metadata": "root.Replica.msg_prepare_preempted",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1330
},
{
"content": " def msg_propose_accept(self, conn, msg):\n \"\"\"MSG_PROPOSE_ACCEPT is handled only if it belongs to an outstanding MSG_PREPARE,\n otherwise it is discarded.\n When MSG_PROPOSE_ACCEPT is received, the corresponding ResponseCollector is retrieved\n and its state is updated accordingly.\n\n State Updates:\n - increment receivedcount\n - if receivedcount is greater than the quorum size, PROPOSE STAGE is successful.\n -- remove the old ResponseCollector from the outstanding prepare set\n -- create MSG_PERFORM: message carries the chosen commandnumber and proposal.\n -- send MSG_PERFORM to all Replicas and Leaders\n -- execute the command\n \"\"\"\n if msg.commandnumber in self.outstandingproposes:\n prc = self.outstandingproposes[msg.commandnumber]\n if msg.inresponseto == prc.ballotnumber:\n prc.receivedcount += 1\n prc.receivedfrom.add(conn.peerid)\n if self.debug: self.logger.write(\"Paxos State\",\n \"got an accept for proposal ballotno %s \"\\\n \"commandno %s proposal %s making %d/%d accepts\" % \\\n (prc.ballotnumber, prc.commandnumber,\n prc.proposal, prc.receivedcount, prc.ntotal))\n if prc.receivedcount >= prc.nquorum:\n if self.debug: self.logger.write(\"Paxos State\", \"Agreed on %s\" % str(prc.proposal))\n # take this response collector out of the outstanding propose set\n self.add_to_proposals(prc.commandnumber, prc.proposal)\n # delete outstanding messages that caller does not need to check for anymore\n del self.outstandingproposes[msg.commandnumber]\n\n # now we can perform this action on the replicas\n performmessage = create_message(MSG_PERFORM, self.me,\n {FLD_COMMANDNUMBER: prc.commandnumber,\n FLD_PROPOSAL: prc.proposal,\n FLD_SERVERBATCH: isinstance(prc.proposal,\n ProposalServerBatch),\n FLD_CLIENTBATCH: isinstance(prc.proposal,\n ProposalClientBatch),\n FLD_DECISIONBALLOTNUMBER: prc.ballotnumber})\n\n if self.debug: self.logger.write(\"Paxos State\", \"Sending PERFORM!\")\n if len(self.replicas) > 0:\n self.send(performmessage, group=self.replicas)\n self.perform(parse_message(performmessage), designated=True)\n if self.debug: self.logger.write(\"State\", \"returning from msg_propose_accept\")",
"metadata": "root.Replica.msg_propose_accept",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1356
},
{
"content": " def msg_propose_reject(self, conn, msg):\n \"\"\"MSG_PROPOSE_REJECT is handled only if it belongs to an outstanding MSG_PROPOSE,\n otherwise it is discarded.\n A MSG_PROPOSE_REJECT causes the PROPOSE STAGE to be unsuccessful, hence the current\n state is deleted and a new PREPARE STAGE is initialized.\n\n State Updates:\n - kill the PROPOSE STAGE that received a MSG_PROPOSE_REJECT\n -- remove the old ResponseCollector from the outstanding prepare set\n - remove the command from proposals, add it to pendingcommands\n - update the ballotnumber\n - initiate command\n \"\"\"\n if msg.commandnumber in self.outstandingproposes:\n prc = self.outstandingproposes[msg.commandnumber]\n if msg.inresponseto == prc.ballotnumber:\n if self.debug: self.logger.write(\"Paxos State\",\n \"got a reject for proposal ballotno %s \"\\\n \"commandno %s proposal %s still %d \"\\\n \"out of %d accepts\" % \\\n (prc.ballotnumber, prc.commandnumber,\n prc.proposal, prc.receivedcount, prc.ntotal))\n # take this response collector out of the outstanding propose set\n del self.outstandingproposes[msg.commandnumber]\n # become inactive\n self.active = False\n # handle reject\n self._handlereject(msg, prc)",
"metadata": "root.Replica.msg_propose_reject",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1403
},
{
"content": " def _handlereject(self, msg, prc):\n if self.debug: self.logger.write(\"State\", \"Handling the reject.\")\n if msg.ballotnumber[BALLOTEPOCH] == self.ballotnumber[BALLOTEPOCH]:\n if self.debug: self.logger.write(\"State\", \"Updating ballotnumber and retrying.\")\n # update the ballot number\n self.update_ballotnumber(msg.ballotnumber)\n # remove the proposal from proposals\n try:\n self.remove_from_proposals(prc.commandnumber)\n except KeyError:\n if self.debug: self.logger.write(\"State\", \"Proposal already removed.\")\n self.pick_commandnumber_add_to_pending(prc.proposal)\n leader_causing_reject = self.detect_colliding_leader(msg.ballotnumber)\n if leader_causing_reject < self.me:\n # if caller lost to a replica whose name precedes its, back off more\n self.backoff += BACKOFFINCREASE\n if self.debug: self.logger.write(\"Paxos State\",\n \"There is another leader: %s\" % \\\n str(leader_causing_reject))\n time.sleep(self.backoff)\n self.issue_pending_commands()\n\n # if the epoch is wrong, should collect the state and start from beginning\n else:\n if self.debug: self.logger.write(\"State\", \"In wrong EPOCH.\")\n self._rejoin()",
"metadata": "root.Replica._handlereject",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1432
},
{
"content": " def _rejoin(self):\n if not self.stateuptodate:\n return\n if self.debug: self.logger.write(\"State\", \"Rejoining.\")\n # leadership state\n self.isleader = False\n self.leader_initializing = False\n self.stateuptodate = False\n # commands that are proposed: <commandnumber:command>\n self.proposals = {}\n self.proposalset = set()\n # commands that are received, not yet proposed: <commandnumber:command>\n self.pendingcommands = {}\n self.pendingcommandset = set()\n # nodes being added/deleted\n self.nodesbeingdeleted = set()\n # keep nodes that are recently updated\n self.recentlyupdatedpeerslock = Lock()\n self.recentlyupdatedpeers = []\n # send msg_helo to the replicas in the view\n for replicapeer in self.replicas:\n if replicapeer != self.me:\n if self.debug: self.logger.write(\"State\", \"Sending HELO to %s\" %\n str(replicapeer))\n helomessage = create_message(MSG_HELO, self.me)\n successid = self.send(helomessage, peer=replicapeer)",
"metadata": "root.Replica._rejoin",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1459
},
{
"content": " def ping_neighbor(self):\n \"\"\"used to ping neighbors periodically\"\"\"\n while True:\n # Go through all peers in the view\n for peer in self.replicas:\n successid = 0\n if peer == self.me:\n continue\n # Check when last heard from peer\n if peer in self.nodeliveness:\n nosound = time.time() - self.nodeliveness[peer]\n else:\n # This peer did not send a message, send a PING\n nosound = LIVENESSTIMEOUT + 1\n\n if nosound <= LIVENESSTIMEOUT:\n # Peer is alive\n self.replicas[peer] = 0\n continue\n if nosound > LIVENESSTIMEOUT:\n # Send PING to peer\n if self.debug: self.logger.write(\"State\", \"Sending PING to %s\" % str(peer))\n pingmessage = create_message(MSG_PING, self.me)\n successid = self.send(pingmessage, peer=peer)\n if successid < 0 or nosound > (2*LIVENESSTIMEOUT):\n # The neighbor is not responding\n if self.debug: self.logger.write(\"State\",\n \"Neighbor not responding %s\" % str(peer))\n # Mark the neighbor\n self.replicas[peer] += 1\n # Check leadership\n if not self.isleader and self.find_leader() == self.me:\n if self.debug: self.logger.write(\"State\",\n \"Becoming leader\")\n self.become_leader()\n if self.isleader and \\\n peer not in self.nodesbeingdeleted and \\\n peer in self.replicas:\n if self.debug: self.logger.write(\"State\",\n \"Deleting node %s\" % str(peer))\n self.nodesbeingdeleted.add(peer)\n delcommand = self.create_delete_command(peer)\n self.pick_commandnumber_add_to_pending(delcommand)\n for i in range(WINDOW):\n noopcommand = self.create_noop_command()\n self.pick_commandnumber_add_to_pending(noopcommand)\n issuemsg = create_message(MSG_ISSUE, self.me)\n self.send(issuemsg, peer=self.me)\n\n with self.recentlyupdatedpeerslock:\n self.recentlyupdatedpeers = []\n time.sleep(LIVENESSTIMEOUT)",
"metadata": "root.Replica.ping_neighbor",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1486
},
{
"content": " def create_delete_command(self, node):\n # include the ballotnumber in the metacommand\n mynumber = self.metacommandnumber\n self.metacommandnumber += 1\n nodename = node.addr + \":\" + str(node.port)\n operationtuple = (\"_del_node\", node.type, nodename, self.ballotnumber)\n command = Proposal(self.me, mynumber, operationtuple)\n return command",
"metadata": "root.Replica.create_delete_command",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1539
},
{
"content": " def create_add_command(self, node):\n mynumber = self.metacommandnumber\n self.metacommandnumber += 1\n nodename = node.addr + \":\" + str(node.port)\n operationtuple = (\"_add_node\", node.type, nodename, self.ballotnumber)\n command = Proposal(self.me, mynumber, operationtuple)\n return command",
"metadata": "root.Replica.create_add_command",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1548
},
{
"content": " def create_noop_command(self):\n mynumber = self.metacommandnumber\n self.metacommandnumber += 1\n nooptuple = (\"noop\")\n command = Proposal(self.me, mynumber, nooptuple)\n return command",
"metadata": "root.Replica.create_noop_command",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1556
},
{
"content": " def cmd_command(self, *args):\n \"\"\"shell command [command]: initiate a new command.\"\"\"\n try:\n cmdproposal = Proposal(self.me, random.randint(1,10000000), args[1:])\n self.handle_client_command(cmdproposal)\n except IndexError as e:\n print \"command expects only one command: \", str(e)",
"metadata": "root.Replica.cmd_command",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1564
},
{
"content": " def cmd_goleader(self, args):\n \"\"\"start Leader state\"\"\"\n self.become_leader()",
"metadata": "root.Replica.cmd_goleader",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1572
},
{
"content": " def cmd_showobject(self, args):\n \"\"\"print replicated object information\"\"\"\n print self.object",
"metadata": "root.Replica.cmd_showobject",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1576
},
{
"content": " def cmd_info(self, args):\n \"\"\"print next commandnumber to execute and executed commands\"\"\"\n print str(self)",
"metadata": "root.Replica.cmd_info",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1580
},
{
"content": " def cmd_proposals(self,args):\n \"\"\"prints proposals\"\"\"\n for cmdnum,command in self.proposals.iteritems():\n print \"%d: %s\" % (cmdnum,str(command))",
"metadata": "root.Replica.cmd_proposals",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1584
},
{
"content": " def cmd_pending(self,args):\n \"\"\"prints pending commands\"\"\"\n for cmdnum,command in self.pendingcommands.iteritems():\n print \"%d: %s\" % (cmdnum,str(command))",
"metadata": "root.Replica.cmd_pending",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1589
},
{
"content": " def terminate_handler(self, signal, frame):\n self._graceexit()",
"metadata": "root.Replica.terminate_handler",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1595
},
{
"content": " def _graceexit(self, exitcode=0):\n sys.stdout.flush()\n sys.stderr.flush()\n if hasattr(self, 'logger'): self.logger.close()\n os._exit(exitcode)",
"metadata": "root.Replica._graceexit",
"header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']",
"index": 1598
},
{
"content": "def main():\n replicanode = Replica()\n replicanode.startservice()\n signal.signal(signal.SIGINT, replicanode.terminate_handler)\n signal.signal(signal.SIGTERM, replicanode.terminate_handler)\n signal.pause()",
"metadata": "root.main",
"header": "['module', '___EOS___']",
"index": 1604
}
]
| [
{
"span": "from threading import Thread, Lock, Timer, Event",
"start_line": 10,
"start_column": 0,
"end_line": 10,
"end_column": 48
},
{
"span": "from concoord.nameserver import Nameserver",
"start_line": 13,
"start_column": 0,
"end_line": 13,
"end_column": 42
},
{
"span": "from concoord.exception import ConCoordException, BlockingReturn, UnblockingReturn",
"start_line": 15,
"start_column": 0,
"end_line": 15,
"end_column": 82
}
]
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Nested loops with same variable | azoft-dev-team/imagrium/env/Lib/distutils/command/sdist.py | [
{
"content": " def add_defaults (self):\n \"\"\"Add all the default files to self.filelist:\n - README or README.txt\n - setup.py\n - test/test*.py\n - all pure Python modules mentioned in setup script\n - all C sources listed as part of extensions or C libraries\n in the setup script (doesn't catch C headers!)\n Warns if (README or README.txt) or setup.py are missing; everything\n else is optional.\n \"\"\"\n\n standards = [('README', 'README.txt'), self.distribution.script_name]\n for fn in standards:\n if type(fn) is TupleType:\n alts = fn\n got_it = 0\n for fn in alts:\n if os.path.exists(fn):\n got_it = 1\n self.filelist.append(fn)\n break\n\n if not got_it:\n self.warn(\"standard file not found: should have one of \" +\n string.join(alts, ', '))\n else:\n if os.path.exists(fn):\n self.filelist.append(fn)\n else:\n self.warn(\"standard file '%s' not found\" % fn)\n\n optional = ['test/test*.py', 'setup.cfg']\n for pattern in optional:\n files = filter(os.path.isfile, glob(pattern))\n if files:\n self.filelist.extend(files)\n\n if self.distribution.has_pure_modules():\n build_py = self.get_finalized_command('build_py')\n self.filelist.extend(build_py.get_source_files())\n\n if self.distribution.has_ext_modules():\n build_ext = self.get_finalized_command('build_ext')\n self.filelist.extend(build_ext.get_source_files())\n\n if self.distribution.has_c_libraries():\n build_clib = self.get_finalized_command('build_clib')\n self.filelist.extend(build_clib.get_source_files())\n\n if self.distribution.has_scripts():\n build_scripts = self.get_finalized_command('build_scripts')\n self.filelist.extend(build_scripts.get_source_files())",
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Except block handles 'BaseException' | CollabQ/CollabQ/vendor/django/test/testcases.py | [
{
"content": " def check_output_xml(self, want, got, optionsflags):\n \"\"\"Tries to do a 'xml-comparision' of want and got. Plain string\n comparision doesn't always work because, for example, attribute\n ordering should not be important.\n\n Based on http://codespeak.net/svn/lxml/trunk/src/lxml/doctestcompare.py\n \"\"\"\n _norm_whitespace_re = re.compile(r'[ \\t\\n][ \\t\\n]+')\n def norm_whitespace(v):\n return _norm_whitespace_re.sub(' ', v)\n\n def child_text(element):\n return ''.join([c.data for c in element.childNodes\n if c.nodeType == Node.TEXT_NODE])\n\n def children(element):\n return [c for c in element.childNodes\n if c.nodeType == Node.ELEMENT_NODE]\n\n def norm_child_text(element):\n return norm_whitespace(child_text(element))\n\n def attrs_dict(element):\n return dict(element.attributes.items())\n\n def check_element(want_element, got_element):\n if want_element.tagName != got_element.tagName:\n return False\n if norm_child_text(want_element) != norm_child_text(got_element):\n return False\n if attrs_dict(want_element) != attrs_dict(got_element):\n return False\n want_children = children(want_element)\n got_children = children(got_element)\n if len(want_children) != len(got_children):\n return False\n for want, got in zip(want_children, got_children):\n if not check_element(want, got):\n return False\n return True\n\n want, got = self._strip_quotes(want, got)\n want = want.replace('\\\\n','\\n')\n got = got.replace('\\\\n','\\n')\n\n # If the string is not a complete xml document, we may need to add a\n # root element. This allow us to compare fragments, like \"<foo/><bar/>\"\n if not want.startswith('<?xml'):\n wrapper = '<root>%s</root>'\n want = wrapper % want\n got = wrapper % got\n\n # Parse the want and got strings, and compare the parsings.\n try:\n want_root = parseString(want).firstChild\n got_root = parseString(got).firstChild\n except:\n return False\n return check_element(want_root, got_root)",
"metadata": "root.OutputChecker.check_output_xml",
"header": "['class', 'OutputChecker', '(', 'doctest', '.', 'OutputChecker', ')', ':', '___EOS___']",
"index": 87
},
{
"content": " def check_output_json(self, want, got, optionsflags):\n \"Tries to compare want and got as if they were JSON-encoded data\"\n want, got = self._strip_quotes(want, got)\n try:\n want_json = simplejson.loads(want)\n got_json = simplejson.loads(got)\n except:\n return False\n return want_json == got_json",
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Unused import | jambonrose/DjangoUnleashed-1.8/core/templatetags/display_form.py | [
{
"content": "from django.core.exceptions import \\\n ImproperlyConfigured\nfrom django.core.urlresolvers import reverse\nfrom django.template import (\n Library, TemplateSyntaxError)\n\n# https://docs.djangoproject.com/en/1.8/howto/custom-template-tags/\nregister = Library()\n\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "@register.inclusion_tag(\n 'core/includes/form.html',\n takes_context=True)\ndef form(context, *args, **kwargs):\n action = (args[0] if len(args) > 0\n else kwargs.get('action'))\n button = (args[1] if len(args) > 1\n else kwargs.get('button'))\n method = (args[2] if len(args) > 2\n else kwargs.get('method'))\n form = context.get('form')\n if action is None:\n raise TemplateSyntaxError(\n \"form template tag requires \"\n \"at least one argument: action, \"\n \"which is a URL.\")\n return {\n 'action': action,\n 'button': button,\n 'form': form,\n 'method': method}",
"metadata": "root.form",
"header": "['module', '___EOS___']",
"index": 10
},
{
"content": "@register.inclusion_tag(\n 'core/includes/confirm_delete_form.html',\n takes_context=True)\ndef delete_form(context, *args, **kwargs):\n action = (args[0] if len(args) > 0\n else kwargs.get('action'))\n method = (args[1] if len(args) > 1\n else kwargs.get('method'))\n form = context.get('form')\n display_object = kwargs.get(\n 'object', context.get('object'))\n if action is None:\n raise TemplateSyntaxError(\n \"delete_form template tag \"\n \"requires at least one argument: \"\n \"action, which is a URL.\")\n if display_object is None:\n raise TemplateSyntaxError(\n \"display_form needs object \"\n \"manually specified in this case.\")\n if hasattr(display_object, 'name'):\n obj_title = display_object.name\n elif hasattr(display_object, 'title'):\n obj_title = display_object.title.title()\n else:\n obj_title = str(display_object)\n obj_type = kwargs.get(\n 'obj_type',\n display_object._meta.verbose_name.title())\n return {\n 'action': action,\n 'form': form,\n 'method': method,\n 'object': display_object,\n 'obj_title': obj_title,\n 'obj_type': obj_type}",
"metadata": "root.delete_form",
"header": "['module', '___EOS___']",
"index": 33
}
]
| [
{
"span": "from django.core.exceptions import \\\n ImproperlyConfigured",
"start_line": 0,
"start_column": 0,
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"end_column": 24
},
{
"span": "from django.core.urlresolvers import reverse",
"start_line": 2,
"start_column": 0,
"end_line": 2,
"end_column": 44
}
]
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|
Unused import | VisTrails/VisTrails/vistrails/gui/version_view.py | [
{
"content": "###############################################################################\n##\n## Copyright (C) 2014-2016, New York University.\n## Copyright (C) 2011-2014, NYU-Poly.\n## Copyright (C) 2006-2011, University of Utah.\n## All rights reserved.\n## Contact: [email protected]\n##\n## This file is part of VisTrails.\n##\n## \"Redistribution and use in source and binary forms, with or without\n## modification, are permitted provided that the following conditions are met:\n##\n## - Redistributions of source code must retain the above copyright notice,\n## this list of conditions and the following disclaimer.\n## - Redistributions in binary form must reproduce the above copyright\n## notice, this list of conditions and the following disclaimer in the\n## documentation and/or other materials provided with the distribution.\n## - Neither the name of the New York University nor the names of its\n## contributors may be used to endorse or promote products derived from\n## this software without specific prior written permission.\n##\n## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\n## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,\n## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR\n## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR\n## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,\n## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,\n## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;\n## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,\n## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR\n## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF\n## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\"\n##\n###############################################################################\n\"\"\" This is a QGraphicsView for pipeline view, it also holds different\ntypes of graphics items that are only available in the pipeline\nview. It only handles GUI-related actions, the rest of the\nfunctionalities are implemented at somewhere else,\ne.g. core.vistrails\n\nQGraphicsLinkItem\nQGraphicsVersionTextItem\nQGraphicsVersionItem\nQVersionTreeScene\nQVersionTreeView\n\"\"\"\nfrom __future__ import division\n\nfrom PyQt4 import QtCore, QtGui\nfrom vistrails.core.configuration import get_vistrails_configuration\nfrom vistrails.core import debug\nfrom vistrails.core.system import systemType\nfrom vistrails.core.thumbnails import ThumbnailCache\nfrom vistrails.core.vistrail.controller import custom_color_key, \\\n parse_custom_color\nfrom vistrails.core.vistrail.vistrail import Vistrail\nfrom vistrails.gui.base_view import BaseView\nfrom vistrails.gui.graphics_view import (QInteractiveGraphicsScene,\n QInteractiveGraphicsView,\n QGraphicsItemInterface)\nfrom vistrails.gui.qt import qt_super\nfrom vistrails.gui.theme import CurrentTheme\nfrom vistrails.gui.version_prop import QVersionPropOverlay\nfrom vistrails.gui.collection.workspace import QParamExplorationEntityItem\nimport vistrails.gui.utils\n\n\n################################################################################\n# QGraphicsLinkItem\n\n\n\n##############################################################################\n# QGraphicsVerstionTextItem\n\n\n##############################################################################\n# QGraphicsVersionItem\n\n\n\n\n\n",
"metadata": "root",
"header": "['module', '___EOS___']",
"index": 0
},
{
"content": "class QGraphicsLinkItem(QGraphicsItemInterface, QtGui.QGraphicsPolygonItem):\n \"\"\"\n QGraphicsLinkItem is a connection shape connecting two versions\n \n \"\"\"\n\n\n\n\n\n",
"metadata": "root.QGraphicsLinkItem",
"header": "['module', '___EOS___']",
"index": 71
},
{
"content": " def __init__(self, parent=None, scene=None):\n \"\"\" QGraphicsLinkItem(parent: QGraphicsItem,\n scene: QGraphicsScene) -> QGraphicsLinkItem\n Create the shape, initialize its pen and brush accordingly\n \n \"\"\"\n QtGui.QGraphicsPolygonItem.__init__(self, parent, scene)\n self.setFlags(QtGui.QGraphicsItem.ItemIsSelectable)\n self.setZValue(0)\n self.linkPen = CurrentTheme.LINK_PEN\n self.ghosted = False\n \n # cache link endpoints to improve performance on scene updates\n self.c1 = None\n self.c2 = None\n self.expand = None\n self.collapse = None",
"metadata": "root.QGraphicsLinkItem.__init__",
"header": "['class', 'QGraphicsLinkItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsPolygonItem', ')', ':', '___EOS___']",
"index": 76
},
{
"content": " def mousePressEvent(self, event):\n \"\"\" mousePressEvent(event: QMouseEvent) -> None\n\n \"\"\"\n qt_super(QGraphicsLinkItem, self).mousePressEvent(event)\n self.setSelected(True)",
"metadata": "root.QGraphicsLinkItem.mousePressEvent",
"header": "['class', 'QGraphicsLinkItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsPolygonItem', ')', ':', '___EOS___']",
"index": 94
},
{
"content": " def mouseReleaseEvent(self, event):\n \"\"\" mouseReleaseEvent(event: QMouseEvent) -> None\n \n \"\"\"\n qt_super(QGraphicsLinkItem, self).mouseReleaseEvent(event)\n if self.expand:\n self.scene().controller.expand_versions(self.startVersion, self.endVersion)\n elif self.collapse:\n self.scene().controller.collapse_versions(self.endVersion)\n self.setSelected(False)",
"metadata": "root.QGraphicsLinkItem.mouseReleaseEvent",
"header": "['class', 'QGraphicsLinkItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsPolygonItem', ')', ':', '___EOS___']",
"index": 101
},
{
"content": " def setGhosted(self, ghosted):\n \"\"\" setGhosted(ghosted: True) -> None\n Set this link to be ghosted or not\n \n \"\"\"\n if self.ghosted <> ghosted:\n self.ghosted = ghosted\n if ghosted:\n self.linkPen = CurrentTheme.GHOSTED_LINK_PEN\n else:\n self.linkPen = CurrentTheme.LINK_PEN",
"metadata": "root.QGraphicsLinkItem.setGhosted",
"header": "['class', 'QGraphicsLinkItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsPolygonItem', ')', ':', '___EOS___']",
"index": 112
},
{
"content": " def setupLink(self, v1, v2, expand=False, collapse=False):\n \"\"\" setupLink(v1, v2: QGraphicsVersionItem, compact: bool) -> None\n Setup a line connecting v1 and v2 items\n \n \"\"\"\n self.startVersion = min(v1.id, v2.id)\n self.endVersion = max(v1.id, v2.id)\n \n c1 = v1.sceneBoundingRect().center()\n c2 = v2.sceneBoundingRect().center()\n\n # check if it is the same geometry \n # improves performance on updates\n if self.c1 is not None and self.c2 is not None and \\\n self.expand is not None and self.collapse !=None:\n isTheSame = self.c1 == c1 and \\\n self.c2 == c2 and \\\n self.expand == expand and \\\n self.collapse == collapse\n if isTheSame:\n return\n \n # update current state\n self.c1 = c1\n self.c2 = c2\n self.collapse = collapse\n self.expand = expand\n\n # Compute the line of the link and its normal line throught\n # the midpoint\n mainLine = QtCore.QLineF(c1, c2)\n normalLine = mainLine.normalVector() \n normalLine.setLength(CurrentTheme.LINK_SEGMENT_LENGTH)\n dis = (mainLine.pointAt(0.5)-mainLine.p1()+\n normalLine.p1()-normalLine.pointAt(0.5))\n normalLine.translate(dis.x(), dis.y())\n\n # Generate 2 segments along the main line and 3 segments along\n # the normal line\n if not self.collapse and not self.expand:\n self.lines = [mainLine]\n poly = QtGui.QPolygonF()\n poly.append(self.lines[0].p1())\n poly.append(self.lines[0].p2())\n poly.append(self.lines[0].p1())\n self.setPolygon(poly)\n else:\n self.lines = []\n \n normalLine = mainLine.normalVector() \n normalLine.setLength(CurrentTheme.LINK_SEGMENT_SQUARE_LENGTH)\n dis = (mainLine.pointAt(0.5)-mainLine.p1()+\n normalLine.p1()-normalLine.pointAt(0.5))\n normalLine.translate(dis.x(), dis.y())\n \n gapLine = QtCore.QLineF(mainLine)\n gapLine.setLength(CurrentTheme.LINK_SEGMENT_SQUARE_LENGTH/2)\n gapVector = gapLine.p2()-gapLine.p1()\n \n # First segment along the main line\n line = QtCore.QLineF(mainLine)\n line.setLength(line.length()/2-CurrentTheme.LINK_SEGMENT_SQUARE_LENGTH/2)\n self.lines.append(QtCore.QLineF(line))\n \n # Second segment along the main line\n line.translate(line.p2()-line.p1()+gapVector*2)\n self.lines.append(QtCore.QLineF(line))\n \n # First normal segment in front\n line_t = QtCore.QLineF(normalLine)\n line_t.translate(gapVector*(-1.0))\n self.lines.append(QtCore.QLineF(line_t))\n \n # Second normal segment in back\n line_b = QtCore.QLineF(normalLine)\n line_b.translate(gapVector)\n self.lines.append(QtCore.QLineF(line_b))\n \n # Left box\n line = QtCore.QLineF(line_t.p1(),line_b.p1())\n self.lines.append(QtCore.QLineF(line))\n \n # Right box\n line = QtCore.QLineF(line_t.p2(),line_b.p2())\n self.lines.append(QtCore.QLineF(line))\n\n # Horizontal plus\n line_h = QtCore.QLineF(normalLine.pointAt(0.2),normalLine.pointAt(0.8))\n self.lines.append(QtCore.QLineF(line_h))\n \n if self.expand:\n # Vertical plus\n line = QtCore.QLineF(mainLine)\n line.translate((line.p2()-line.p1())/2-gapVector)\n line.setLength(CurrentTheme.LINK_SEGMENT_SQUARE_LENGTH)\n line_v = QtCore.QLineF(line.pointAt(0.2), line.pointAt(0.8))\n self.lines.append(QtCore.QLineF(line_v))\n \n # Create the poly line for selection and redraw\n poly = QtGui.QPolygonF()\n poly.append(self.lines[0].p1())\n poly.append(self.lines[2].p1())\n poly.append(self.lines[3].p1())\n poly.append(self.lines[1].p2())\n poly.append(self.lines[3].p2())\n poly.append(self.lines[2].p2())\n poly.append(self.lines[0].p1())\n self.setPolygon(poly)\n\n self.setGhosted(v1.ghosted and v2.ghosted)",
"metadata": "root.QGraphicsLinkItem.setupLink",
"header": "['class', 'QGraphicsLinkItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsPolygonItem', ')', ':', '___EOS___']",
"index": 124
},
{
"content": " def paint(self, painter, option, widget=None):\n \"\"\" paint(painter: QPainter, option: QStyleOptionGraphicsItem,\n widget: QWidget) -> None\n Peform actual painting of the link\n \n \"\"\"\n if self.isSelected():\n painter.setPen(CurrentTheme.LINK_SELECTED_PEN)\n else:\n painter.setPen(self.linkPen)\n for line in self.lines:\n painter.drawLine(line)",
"metadata": "root.QGraphicsLinkItem.paint",
"header": "['class', 'QGraphicsLinkItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsPolygonItem', ')', ':', '___EOS___']",
"index": 235
},
{
"content": " def itemChange(self, change, value):\n \"\"\" itemChange(change: GraphicsItemChange, value: variant) -> variant\n Do not allow link to be selected with version shape\n \n \"\"\"\n if change==QtGui.QGraphicsItem.ItemSelectedChange and value:\n return False\n return QtGui.QGraphicsPolygonItem.itemChange(self, change, value)",
"metadata": "root.QGraphicsLinkItem.itemChange",
"header": "['class', 'QGraphicsLinkItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsPolygonItem', ')', ':', '___EOS___']",
"index": 248
},
{
"content": "class QGraphicsVersionTextItem(QGraphicsItemInterface, QtGui.QGraphicsTextItem):\n \"\"\"\n QGraphicsVersionTextItem is an editable text item that appears on top of\n a QGraphicsVersionItem to allow the tag to be changed\n\n \"\"\"\n\n\n\n\n\n\n\n",
"metadata": "root.QGraphicsVersionTextItem",
"header": "['module', '___EOS___']",
"index": 261
},
{
"content": " def __init__(self, parent=None, scene=None):\n \"\"\" QGraphicsVersionTextItem(parent: QGraphicsVersionItem, \n scene: QGraphicsScene) -> QGraphicsVersionTextItem\n\n Create the shape, intialize its drawing style\n\n \"\"\"\n QtGui.QGraphicsTextItem.__init__(self, parent, scene)\n self.timer = None\n self.isEditable = None\n self.setEditable(False)\n self.setFont(CurrentTheme.VERSION_FONT)\n self.setTextWidth(CurrentTheme.VERSION_LABEL_MARGIN[0])\n self.setDefaultTextColor(CurrentTheme.VERSION_LABEL_COLOR)\n self.centerX = 0.0\n self.centerY = 0.0\n self.label = ''\n self.isTag = True\n self.updatingTag = False",
"metadata": "root.QGraphicsVersionTextItem.__init__",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 267
},
{
"content": " def setEditable(self, editable=True):\n if self.timer:\n self.timer.stop()\n self.timer = None\n if editable == self.isEditable:\n return\n self.isEditable = editable\n if editable:\n self.setTextInteractionFlags(QtCore.Qt.TextEditorInteraction)\n else:\n if self.textCursor():\n c = self.textCursor()\n c.clearSelection()\n self.setTextCursor(c)\n self.setTextInteractionFlags(QtCore.Qt.NoTextInteraction)",
"metadata": "root.QGraphicsVersionTextItem.setEditable",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 287
},
{
"content": " def setEditableLater(self):\n self.timer = QtCore.QTimer(self)\n self.timer.setSingleShot(True)\n self.connect(self.timer, QtCore.SIGNAL(\"timeout()\"), self.setEditable)\n self.timer.start(QtGui.QApplication.doubleClickInterval() + 5)",
"metadata": "root.QGraphicsVersionTextItem.setEditableLater",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 303
},
{
"content": " def setGhosted(self, ghosted):\n if ghosted:\n self.setDefaultTextColor(CurrentTheme.GHOSTED_VERSION_LABEL_COLOR)\n else:\n self.setDefaultTextColor(CurrentTheme.VERSION_LABEL_COLOR)",
"metadata": "root.QGraphicsVersionTextItem.setGhosted",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 309
},
{
"content": " def changed(self, x, y, label, tag=True):\n \"\"\" changed(x: float, y: float, label: str) -> None\n Change the position and text label from outside the editor\n\n \"\"\"\n if self.centerX <> x or self.centerY <> y or self.label <> label:\n self.centerX = x\n self.centerY = y\n self.label = label\n self.isTag = tag\n if self.isTag:\n self.setFont(CurrentTheme.VERSION_FONT)\n else:\n self.setFont(CurrentTheme.VERSION_DESCRIPTION_FONT)\n self.reset()",
"metadata": "root.QGraphicsVersionTextItem.changed",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 315
},
{
"content": " def reset(self):\n \"\"\" reset() -> None\n Resets the text label, width, and positions to the stored values\n\n \"\"\"\n self.setPlainText(self.label)\n self.setEditable(False)\n if (len(str(self.label)) > 0):\n self.setTextWidth(-1)\n else:\n self.setTextWidth(CurrentTheme.VERSION_LABEL_MARGIN[0])\n \n if self.isTag:\n self.setFont(CurrentTheme.VERSION_FONT)\n else:\n self.setFont(CurrentTheme.VERSION_DESCRIPTION_FONT) \n self.updatePos()\n self.parentItem().updateWidthFromLabel()",
"metadata": "root.QGraphicsVersionTextItem.reset",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 331
},
{
"content": " def updatePos(self):\n \"\"\" updatePos() -> None\n Center the text, by default it uses the upper left corner\n \n \"\"\"\n self.setPos(self.centerX-self.boundingRect().width()/2.0,\n self.centerY-self.boundingRect().height()/2.0)",
"metadata": "root.QGraphicsVersionTextItem.updatePos",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 350
},
{
"content": " def keyPressEvent(self, event):\n \"\"\" keyPressEvent(event: QEvent) -> None\n Enter and Return keys signal a change in the label. Other keys\n update the position and size of the parent ellipse during key entry.\n\n \"\"\"\n if event.key() in [QtCore.Qt.Key_Enter, QtCore.Qt.Key_Return]:\n self.updatingTag = True\n if (self.label == str(self.toPlainText()) or\n not self.scene().controller.update_current_tag(str(self.toPlainText()))):\n self.reset()\n self.updatingTag = False\n event.ignore()\n self.clearFocus()\n return\n qt_super(QGraphicsVersionTextItem, self).keyPressEvent(event)\n if (len(str(self.toPlainText())) > 0):\n self.setTextWidth(-1)\n self.updatePos()\n self.parentItem().updateWidthFromLabel()",
"metadata": "root.QGraphicsVersionTextItem.keyPressEvent",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 358
},
{
"content": " def focusOutEvent(self, event):\n \"\"\" focusOutEvent(event: QEvent) -> None\n Update the tag if the text has changed\n\n \"\"\"\n qt_super(QGraphicsVersionTextItem, self).focusOutEvent(event)\n if not self.updatingTag and self.label != self.toPlainText():\n self.updatingTag = True\n if (self.label == str(self.toPlainText()) or \n not self.scene().controller.update_current_tag(str(self.toPlainText()))):\n self.reset()\n self.updatingTag = False",
"metadata": "root.QGraphicsVersionTextItem.focusOutEvent",
"header": "['class', 'QGraphicsVersionTextItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsTextItem', ')', ':', '___EOS___']",
"index": 379
},
{
"content": "class QGraphicsVersionItem(QGraphicsItemInterface, QtGui.QGraphicsEllipseItem):\n \"\"\"\n QGraphicsVersionItem is the version shape holding version id and\n label\n \n \"\"\"\n\n versionPen = property(_get_versionPen, _set_versionPen)\n\n versionBrush = property(_get_versionBrush, _set_versionBrush)\n\n\n\n\n \n\n\n\n\n\n \n\n\n\n\n\n\n \n\n",
"metadata": "root.QGraphicsVersionItem",
"header": "['module', '___EOS___']",
"index": 396
},
{
"content": " def __init__(self, parent=None, scene=None):\n \"\"\" QGraphicsVersionItem(parent: QGraphicsItem, scene: QGraphicsScene)\n -> QGraphicsVersionItem\n Create the shape, initialize its pen and brush accordingly\n \n \"\"\"\n QtGui.QGraphicsEllipseItem.__init__(self, parent, scene)\n self.setZValue(1)\n self.setAcceptDrops(True)\n self.setFlags(QtGui.QGraphicsItem.ItemIsSelectable)\n self._versionPenNormal = CurrentTheme.VERSION_PEN\n self._versionPen = CurrentTheme.VERSION_PEN\n self._versionBrush = CurrentTheme.VERSION_USER_BRUSH\n self.id = -1\n self.label = ''\n self.descriptionLabel = ''\n self.dragging = False\n self.ghosted = False\n self.updatePainterState()\n\n # self.rank is a positive number that determines the\n # saturation of the node. Two version nodes might have the\n # same rank if they were created by different users\n # self.max_rank is the maximum rank for that version class\n self.rank = -1\n self.max_rank = -1\n \n # Editable text item that remains hidden unless the version is selected\n self.text = QGraphicsVersionTextItem(self)\n\n # Need a timer to start a drag to avoid stalls on QGraphicsView\n self.dragTimer = QtCore.QTimer()\n self.dragTimer.setSingleShot(True)\n self.dragTimer.connect(self.dragTimer,\n QtCore.SIGNAL('timeout()'),\n self.startDrag)\n\n self.dragPos = QtCore.QPoint()",
"metadata": "root.QGraphicsVersionItem.__init__",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 402
},
{
"content": " def _get_versionPen(self):\n return self._versionPen",
"metadata": "root.QGraphicsVersionItem._get_versionPen",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 441
},
{
"content": " def _set_versionPen(self, pen):\n self._versionPen = pen\n self.updatePainterState()",
"metadata": "root.QGraphicsVersionItem._set_versionPen",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 443
},
{
"content": " def _get_versionBrush(self):\n return self._versionBrush",
"metadata": "root.QGraphicsVersionItem._get_versionBrush",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 448
},
{
"content": " def _set_versionBrush(self, brush):\n self._versionBrush = brush\n self.updatePainterState()",
"metadata": "root.QGraphicsVersionItem._set_versionBrush",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 450
},
{
"content": " def itemChange(self, change, value):\n if change == QtGui.QGraphicsItem.ItemSelectedHasChanged:\n if self.isSelected():\n self.versionPen = CurrentTheme.VERSION_SELECTED_PEN\n self.text.setEditableLater()\n else:\n self.versionPen = self._versionPenNormal\n self.text.setEditable(False)\n self.updatePainterState()\n return QtGui.QGraphicsItem.itemChange(self, change, value)",
"metadata": "root.QGraphicsVersionItem.itemChange",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 455
},
{
"content": " def setGhosted(self, ghosted=True):\n \"\"\" setGhosted(ghosted: True) -> None\n Set this version to be ghosted or not\n \n \"\"\"\n if self.ghosted <> ghosted:\n self.ghosted = ghosted\n self.text.setGhosted(ghosted)\n if ghosted:\n self._versionPenNormal = CurrentTheme.GHOSTED_VERSION_PEN\n self._versionBrush = CurrentTheme.GHOSTED_VERSION_USER_BRUSH\n else:\n self._versionPenNormal = CurrentTheme.VERSION_PEN\n self._versionBrush = CurrentTheme.VERSION_USER_BRUSH\n if not self.isSelected():\n self._versionPen = self._versionPenNormal\n self.updatePainterState()",
"metadata": "root.QGraphicsVersionItem.setGhosted",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 466
},
{
"content": " def update_color(self, isThisUs, new_rank, new_max_rank, new_ghosted,\n new_customcolor):\n \"\"\" update_color(isThisUs: bool,\n new_rank, new_max_rank: int) -> None\n\n If necessary, update the colors of this version node based on\n who owns the node and new ranks\n\n NOTE: if username changes during execution, this might break.\n \"\"\"\n if (new_rank == self.rank and new_max_rank == self.max_rank and\n new_ghosted == self.ghosted and\n new_customcolor == self.custom_color):\n # nothing changed\n return\n self.setGhosted(new_ghosted)\n self.custom_color = new_customcolor\n self.rank = new_rank\n self.max_rank = new_max_rank\n if not self.ghosted:\n if self.custom_color is not None:\n configuration = get_vistrails_configuration()\n sat_from_rank = not configuration.check(\n 'fixedCustomVersionColorSaturation')\n brush = QtGui.QBrush(QtGui.QColor.fromRgb(*self.custom_color))\n else:\n if isThisUs:\n brush = CurrentTheme.VERSION_USER_BRUSH\n else:\n brush = CurrentTheme.VERSION_OTHER_BRUSH\n sat_from_rank = True\n if sat_from_rank:\n sat = float(new_rank+1) / new_max_rank\n (h, s, v, a) = brush.color().getHsvF()\n newHsv = (h, s*sat, v+(1.0-v)*(1-sat), a)\n brush = QtGui.QBrush(brush)\n brush.setColor(QtGui.QColor.fromHsvF(*newHsv))\n self.versionBrush = brush\n self.update()",
"metadata": "root.QGraphicsVersionItem.update_color",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 484
},
{
"content": " def setSaturation(self, isThisUser, sat):\n \"\"\" setSaturation(isThisUser: bool, sat: float) -> None \n Set the color of this version depending on whose is the user\n and its saturation\n \n \"\"\"\n if not self.ghosted:\n if isThisUser:\n brush = CurrentTheme.VERSION_USER_BRUSH\n else:\n brush = CurrentTheme.VERSION_OTHER_BRUSH\n\n (h, s, v, a) = brush.color().getHsvF()\n newHsv = (h, s*sat, v+(1.0-v)*(1-sat), a)\n self.versionBrush = QtGui.QBrush(QtGui.QColor.fromHsvF(*newHsv))",
"metadata": "root.QGraphicsVersionItem.setSaturation",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 524
},
{
"content": " def updateWidthFromLabel(self):\n \"\"\" updateWidthFromLabel() -> None\n Change the width of the ellipse based on a temporary change in the label\n\n \"\"\"\n prevWidth = self.rect().width()\n width = self.text.boundingRect().width() + \\\n CurrentTheme.VERSION_LABEL_MARGIN[0] - 4\n r = self.rect()\n r.setX(r.x()+(prevWidth-width)/2.0)\n r.setWidth(width)\n self.setRect(r)\n self.update()",
"metadata": "root.QGraphicsVersionItem.updateWidthFromLabel",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 540
},
{
"content": " def setupVersion(self, node, action, tag, description):\n \"\"\" setupPort(node: DotNode,\n action: DBAction,\n tag: str,\n description: str) -> None\n Update the version dimensions and id\n \n \"\"\"\n # Lauro:\n # what was this hacking??? the coordinates inside\n # the input \"node\" should come to this point ready. This is\n # not the point to do layout calculations (e.g. -node.p.y/2)\n\n # Carlos:\n # This is not layout as much as dealing with the way Qt\n # specifies rectangles. Besides, moving this back here reduces\n # code duplication, and allows customized behavior for\n # subclasses.\n\n rect = QtCore.QRectF(node.p.x-node.width/2.0,\n node.p.y-node.height/2.0,\n node.width,\n node.height)\n validLabel = True\n if tag is None:\n label = ''\n validLabel=False\n else:\n label = tag\n\n self.id = node.id\n self.label = label\n if description is None:\n self.descriptionLabel = ''\n else:\n self.descriptionLabel = description\n if validLabel:\n textToDraw=self.label\n else:\n textToDraw=self.descriptionLabel\n\n if (ThumbnailCache.getInstance().conf.mouseHover and\n action and action.thumbnail is not None):\n fname = ThumbnailCache.getInstance().get_abs_name_entry(action.thumbnail)\n self.setToolTip('<img src=\"%s\" height=\"128\" border=\"1\"/>'%fname)\n else:\n self.setToolTip('') \n self.text.changed(node.p.x, node.p.y, textToDraw, validLabel)\n self.setRect(rect)",
"metadata": "root.QGraphicsVersionItem.setupVersion",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 554
},
{
"content": " def boundingRect(self):\n \"\"\" boundingRect() -> QRectF\n Add a padded space to avoid un-updated area\n \"\"\"\n return self.rect().adjusted(-2, -2, 2, 2)",
"metadata": "root.QGraphicsVersionItem.boundingRect",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 604
},
{
"content": " def paint(self, painter, option, widget=None):\n option.state &= ~QtGui.QStyle.State_Selected\n QtGui.QGraphicsEllipseItem.paint(self, painter, option, widget)",
"metadata": "root.QGraphicsVersionItem.paint",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 610
},
{
"content": " def updatePainterState(self):\n self.setPen(self._versionPen)\n self.setBrush(self._versionBrush)",
"metadata": "root.QGraphicsVersionItem.updatePainterState",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 614
},
{
"content": " def mousePressEvent(self, event):\n \"\"\" mousePressEvent(event: QMouseEvent) -> None\n Start dragging a version to someplaces...\n \n \"\"\"\n if event.button()==QtCore.Qt.LeftButton:\n self.dragging = True\n self.dragPos = QtCore.QPoint(event.screenPos())\n return QtGui.QGraphicsEllipseItem.mousePressEvent(self, event)",
"metadata": "root.QGraphicsVersionItem.mousePressEvent",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 618
},
{
"content": " def mouseMoveEvent(self, event):\n \"\"\" mouseMoveEvent(event: QMouseEvent) -> None \n Now set the timer preparing for dragging. Must use a timer in\n junction with QDrag in order to avoid problem updates stall of\n QGraphicsView, especially on Linux\n \n \"\"\"\n if (self.dragging and\n (event.screenPos()-self.dragPos).manhattanLength()>2):\n self.dragging = False\n #the timer has undesirable effects on Windows\n if systemType not in ['Windows', 'Microsoft']:\n self.dragTimer.start(1)\n else:\n self.startDrag()\n QtGui.QGraphicsEllipseItem.mouseMoveEvent(self, event)\n # super(QGraphicsVersionItem, self).mouseMoveEvent(event)",
"metadata": "root.QGraphicsVersionItem.mouseMoveEvent",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 628
},
{
"content": " def startDrag(self):\n \"\"\" startDrag() -> None\n Start the drag of QDrag\n \n \"\"\"\n data = QtCore.QMimeData()\n data.versionId = self.id\n data.controller = self.scene().controller\n drag = QtGui.QDrag(self.scene().views()[0])\n drag.setMimeData(data)\n drag.setPixmap(CurrentTheme.VERSION_DRAG_PIXMAP)\n drag.start()",
"metadata": "root.QGraphicsVersionItem.startDrag",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 646
},
{
"content": " def mouseReleaseEvent(self, event):\n \"\"\" mouseReleaseEvent(event: QMouseEvent) -> None\n Cancel the drag\n \n \"\"\"\n self.dragging = False\n QtGui.QGraphicsEllipseItem.mouseReleaseEvent(self, event)",
"metadata": "root.QGraphicsVersionItem.mouseReleaseEvent",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 659
},
{
"content": " def dragEnterEvent(self, event):\n \"\"\" dragEnterEvent(event: QDragEnterEvent) -> None\n Capture version-to-version drag-and-drop\n Also capture parameter exploration assignment\n \"\"\"\n data = event.mimeData()\n if (hasattr(data, 'versionId') and\n hasattr(data, 'controller') and\n data.versionId!=self.id) or \\\n (hasattr(data, 'items') and \n len(data.items) == 1 and\n isinstance(data.items[0], QParamExplorationEntityItem)):\n event.accept()\n else:\n event.ignore()",
"metadata": "root.QGraphicsVersionItem.dragEnterEvent",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 667
},
{
"content": " def dropEvent(self, event):\n data = event.mimeData()\n if (hasattr(data, 'versionId') and hasattr(data, 'controller') and\n data.controller==self.scene().controller):\n event.accept()\n self.scene().emit(QtCore.SIGNAL('diffRequested(int,int)'),\n data.versionId, self.id)\n # visDiff = QVisualDiff(self.scene().controller.vistrail,\n # data.versionId,\n # self.id,\n # self.scene().controller,\n # self.scene().views()[0])\n # visDiff.show()\n elif (hasattr(data, 'items') and \n len(data.items) == 1 and\n isinstance(data.items[0], QParamExplorationEntityItem)):\n # apply this parameter exploration to the new version, validate it and switch to PE view\n from vistrails.gui.vistrails_window import _app\n view = _app.get_current_view()\n view.apply_parameter_exploration(self.id, data.items[0].entity.pe)\n event.accept()\n else:\n event.ignore() ",
"metadata": "root.QGraphicsVersionItem.dropEvent",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 683
},
{
"content": " def perform_analogy(self):\n sender = self.scene().sender()\n analogy_name = str(sender.text())\n # selectedItems = self.scene().selectedItems()\n controller = self.scene().controller\n print \"calling perform analogy\", analogy_name, self.id\n # for item in selectedItems:\n controller.perform_analogy(analogy_name, self.id)",
"metadata": "root.QGraphicsVersionItem.perform_analogy",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 707
},
{
"content": " def show_raw_pipeline(self):\n self.scene().emit_selection = False\n for item in self.scene().selectedItems():\n item.setSelected(False)\n self.setSelected(True)\n self.scene().emit_selection = True\n self.scene().emit(\n QtCore.SIGNAL('versionSelected(int,bool,bool,bool,bool)'),\n self.id, True, False, True, True)",
"metadata": "root.QGraphicsVersionItem.show_raw_pipeline",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 716
},
{
"content": " def construct_from_root(self):\n self.scene().emit_selection = False\n for item in self.scene().selectedItems():\n item.setSelected(False)\n self.setSelected(True)\n self.scene().emit_selection = True\n self.scene().emit(\n QtCore.SIGNAL('versionSelected(int,bool,bool,bool,bool)'),\n self.id, True, True, True, True)",
"metadata": "root.QGraphicsVersionItem.construct_from_root",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 726
},
{
"content": " def contextMenuEvent(self, event):\n \"\"\"contextMenuEvent(event: QGraphicsSceneContextMenuEvent) -> None\n Captures context menu event.\n\n \"\"\"\n controller = self.scene().controller\n menu = QtGui.QMenu()\n raw_action = QtGui.QAction(\"Display raw pipeline\", self.scene())\n from_root_action = QtGui.QAction(\"Construct from root\", self.scene())\n QtCore.QObject.connect(raw_action,\n QtCore.SIGNAL(\"triggered()\"),\n self.show_raw_pipeline)\n QtCore.QObject.connect(from_root_action,\n QtCore.SIGNAL(\"triggered()\"),\n self.construct_from_root)\n menu.addAction(raw_action)\n menu.addAction(from_root_action)\n if len(controller.analogy) > 0:\n analogies = QtGui.QMenu(\"Perform analogy...\")\n for title in sorted(controller.analogy.keys()):\n act = QtGui.QAction(title, self.scene())\n analogies.addAction(act)\n QtCore.QObject.connect(act,\n QtCore.SIGNAL(\"triggered()\"),\n self.perform_analogy)\n menu.addMenu(analogies)\n menu.exec_(event.screenPos())",
"metadata": "root.QGraphicsVersionItem.contextMenuEvent",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 736
},
{
"content": " def mouseDoubleClickEvent(self, event):\n # QtGui.QGraphicsEllipseItem.mouseDoubleClickEvent(self, event)\n event.accept()\n self.scene().double_click(self.id)",
"metadata": "root.QGraphicsVersionItem.mouseDoubleClickEvent",
"header": "['class', 'QGraphicsVersionItem', '(', 'QGraphicsItemInterface', ',', 'QtGui', '.', 'QGraphicsEllipseItem', ')', ':', '___EOS___']",
"index": 764
},
{
"content": "class QVersionTreeScene(QInteractiveGraphicsScene):\n \"\"\"\n QVersionTree inherits from QInteractiveGraphicsScene to keep track\n of the version scenes, i.e. versions, connections, etc.\n \n \"\"\"\n\n\n\n\n \n\n\n\n\n\n\n",
"metadata": "root.QVersionTreeScene",
"header": "['module', '___EOS___']",
"index": 770
},
{
"content": " def __init__(self, parent=None):\n \"\"\" QVersionTree(parent: QWidget) -> QVersionTree\n Initialize the graphics scene with no shapes\n \n \"\"\"\n QInteractiveGraphicsScene.__init__(self, parent)\n self.setBackgroundBrush(CurrentTheme.VERSION_TREE_BACKGROUND_BRUSH)\n self.setSceneRect(QtCore.QRectF(-5000, -5000, 10000, 10000))\n self.versions = {} # id -> version gui object\n self.edges = {} # (sourceVersion, targetVersion) -> edge gui object\n self.controller = None\n self.fullGraph = None\n self.emit_selection = True\n self.select_by_click = True\n self.connect(self, QtCore.SIGNAL(\"selectionChanged()\"),\n self.selectionChanged)",
"metadata": "root.QVersionTreeScene.__init__",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 777
},
{
"content": " def addVersion(self, node, action, tag, description):\n \"\"\" addModule(node, action: DBAction, tag: str, description: str,\n custom_color: (int, int, int))\n -> None\n Add a module to the scene.\n\n \"\"\"\n versionShape = QGraphicsVersionItem(None)\n versionShape.setupVersion(node, action, tag, description)\n self.addItem(versionShape)\n self.versions[node.id] = versionShape",
"metadata": "root.QVersionTreeScene.addVersion",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 794
},
{
"content": " def removeVersion(self, v):\n \"\"\" addLink(v: integer) -> None\n Remove version from scene and mapping\n \n \"\"\"\n versionShape = self.versions[v]\n self.removeItem(versionShape)\n self.versions.pop(v)",
"metadata": "root.QVersionTreeScene.removeVersion",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 806
},
{
"content": " def addLink(self, guiSource, guiTarget, expand, collapse):\n \"\"\" addLink(v1, v2: QGraphicsVersionItem) -> None\n Add a link to the scene\n \n \"\"\"\n linkShape = QGraphicsLinkItem()\n linkShape.setupLink(guiSource, guiTarget, expand, collapse)\n self.addItem(linkShape)\n self.edges[(guiSource.id, guiTarget.id)] = linkShape",
"metadata": "root.QVersionTreeScene.addLink",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 815
},
{
"content": " def removeLink(self, source, target):\n \"\"\" removeLink(v1, v2: integers) -> None\n Remove link from scene and mapping\n \n \"\"\"\n linkShape = self.edges[(source,target)]\n self.removeItem(linkShape)\n self.edges.pop((source, target))",
"metadata": "root.QVersionTreeScene.removeLink",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 825
},
{
"content": " def clear(self):\n \"\"\" clear() -> None\n Clear the whole scene\n \n \"\"\"\n self.versions = {}\n self.clearItems()",
"metadata": "root.QVersionTreeScene.clear",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 834
},
{
"content": " def adjust_version_colors(self, controller):\n \"\"\" adjust_version_colors(controller: VistrailController) -> None\n Based on the controller to set version colors\n \n \"\"\"\n currentUser = controller.vistrail.getUser()\n ranks = {}\n ourMaxRank = 0\n otherMaxRank = 0\n am = controller.vistrail.actionMap\n for nodeId in sorted(self.versions.keys()):\n if nodeId!=0:\n nodeUser = am[nodeId].user\n if nodeUser==currentUser:\n ranks[nodeId] = ourMaxRank\n ourMaxRank += 1\n else:\n ranks[nodeId] = otherMaxRank\n otherMaxRank += 1\n for (nodeId, item) in self.versions.iteritems():\n if nodeId == 0:\n item.setGhosted(True)\n continue\n nodeUser = am[nodeId].user\n if controller.search and nodeId!=0:\n action = am[nodeId]\n if getattr(get_vistrails_configuration(), 'hideUpgrades',\n True):\n # Use upgraded version to match\n action = am[controller.vistrail.get_upgrade(nodeId, False)]\n ghosted = not controller.search.match(controller, action)\n else:\n ghosted = False\n \n #item.setGhosted(ghosted) # we won't set it now so we can check if\n # the state changed in update_color\n if nodeUser==currentUser:\n max_rank = ourMaxRank\n else:\n max_rank = otherMaxRank\n# max_rank = ourMaxRank if nodeUser==currentUser else otherMaxRank\n configuration = get_vistrails_configuration()\n if configuration.check('customVersionColors'):\n custom_color = controller.vistrail.get_action_annotation(\n nodeId,\n custom_color_key)\n if custom_color is not None:\n try:\n custom_color = parse_custom_color(custom_color.value)\n except ValueError, e:\n debug.warning(\"Version %r has invalid color annotation \"\n \"(%s)\" % (nodeId, e))\n custom_color = None\n else:\n custom_color = None\n ####\n item.update_color(nodeUser==currentUser,\n ranks[nodeId],\n max_rank, ghosted, custom_color)\n for (version_from, version_to), link in self.edges.iteritems():\n if self.versions[version_from].ghosted and \\\n self.versions[version_to].ghosted:\n link.setGhosted(True)\n else:\n link.setGhosted(False)",
"metadata": "root.QVersionTreeScene.adjust_version_colors",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 842
},
{
"content": " def update_scene_single_node_change(self, controller, old_version, new_version):\n \"\"\" update_scene_single_node_change(controller: VistrailController,\n old_version, new_version: int) -> None\n\n Faster alternative to setup_scene when a single version is\n changed. When this is called, we know that both old_version\n and new_version don't have tags associated, so no layout\n changes happen\n \n \"\"\"\n # self.setupScene(controller)\n\n # we need to call this every time because version ranks might\n # change\n self.adjust_version_colors(controller)\n\n # update version item\n v = self.versions[old_version]\n old_desc = controller.vistrail.get_description(old_version)\n new_desc = controller.vistrail.get_description(new_version)\n if old_desc != new_desc:\n v.descriptionLabel = new_desc\n v.text.changed(v.text.centerX, v.text.centerY, new_desc, False)\n v.updateWidthFromLabel()\n self.versions[new_version] = v\n del self.versions[old_version]\n v.id = new_version\n\n # update link items\n dst = controller._current_terse_graph.edges_from(new_version)\n for eto, (expand, collapse) in dst:\n edge = self.edges[(old_version, eto)]\n edge.setupLink(self.versions[new_version],\n self.versions[eto],\n expand,\n False) # We shouldn't ever need a collapse here\n self.edges[(new_version, eto)] = edge\n del self.edges[(old_version, eto)]\n\n src = controller._current_terse_graph.edges_to(new_version)\n for efrom, (expand, collapse) in src:\n edge = self.edges[(efrom, old_version)]\n edge.setupLink(self.versions[efrom],\n self.versions[new_version],\n expand,\n False) # We shouldn't ever need a collapse here\n self.edges[(efrom, new_version)] = edge\n del self.edges[(efrom, old_version)]",
"metadata": "root.QVersionTreeScene.update_scene_single_node_change",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 908
},
{
"content": " def setupScene(self, controller, select_node=True):\n \"\"\" setupScene(controller: VistrailController) -> None\n Construct the scene to view a version tree\n \n \"\"\"\n self.select_by_click = False \n self.controller = controller\n\n # perform graph layout\n (tree, self.fullGraph, layout) = controller.refine_graph()\n\n # compute nodes that should be removed\n # O(n * (hashmap query key time)) on \n # where n is the number of current \n # nodes in the scene\n removeNodeSet = set(i for i in self.versions\n if not i in tree.vertices)\n\n # compute edges to be removed\n # O(n * (hashmap query key time)) \n # where n is the number of current \n # edges in the scene\n removeEdgeSet = set((s, t) for (s, t) in self.edges\n if (s in removeNodeSet or\n t in removeNodeSet or\n not tree.has_edge(s, t)))\n\n # loop on the nodes of the tree\n vistrail = controller.vistrail\n am = vistrail.actionMap\n last_n = vistrail.getLastActions(controller.num_versions_always_shown)\n\n self.emit_selection = False\n for node in layout.nodes.itervalues():\n # version id\n v = node.id\n\n # version tag\n tag = tree.vertices.get(v, None)\n action = am.get(v, None)\n description = vistrail.get_description(v)\n\n # if the version gui object already exists...\n if v in self.versions:\n versionShape = self.versions[v]\n versionShape.setupVersion(node, action, tag, description)\n else:\n self.addVersion(node, action, tag, description)\n if select_node:\n self.versions[v].setSelected(v == controller.current_base_version)\n\n self.emit_selection = True\n self.selectionChanged()\n\n # remove gui edges from scene\n for (v1, v2) in removeEdgeSet:\n self.removeLink(v1,v2)\n\n # remove gui nodes from scene\n for v in removeNodeSet:\n self.removeVersion(v)\n\n # adjust the colors\n self.adjust_version_colors(controller)\n\n # Add or update links\n for source, source_tag in tree.vertices.iteritems():\n eFrom = tree.edges_from(source)\n for target, (expand, collapse) in eFrom:\n guiSource = self.versions[source]\n guiTarget = self.versions[target]\n if self.edges.has_key((source,target)):\n linkShape = self.edges[(source,target)]\n linkShape.setupLink(guiSource, guiTarget,\n expand, collapse)\n else:\n self.addLink(guiSource, guiTarget, \n expand, collapse)\n\n # Update bounding rects and fit to all view\n self.updateSceneBoundingRect()\n\n self.select_by_click = True",
"metadata": "root.QVersionTreeScene.setupScene",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 957
},
{
"content": " def keyPressEvent(self, event):\n \"\"\" keyPressEvent(event: QKeyEvent) -> None\n Capture 'Del', 'Backspace' for pruning versions when not editing a tag\n \n \"\"\" \n selectedItems = self.selectedItems()\n versions = [item.id for item in selectedItems \n if isinstance(item, QGraphicsVersionItem)\n and not item.text.hasFocus()] \n if (self.controller and len(versions)>0 and\n event.key() in [QtCore.Qt.Key_Backspace, QtCore.Qt.Key_Delete]):\n event.accept()\n versions = [item.id for item in selectedItems]\n res = vistrails.gui.utils.show_question(\"VisTrails\",\n \"Are you sure that you want to \"\n \"prune the selected version(s)?\",\n [vistrails.gui.utils.YES_BUTTON,\n vistrails.gui.utils.NO_BUTTON],\n vistrails.gui.utils.NO_BUTTON)\n if res == vistrails.gui.utils.YES_BUTTON:\n self.controller.prune_versions(versions)\n else:\n qt_super(QVersionTreeScene, self).keyPressEvent(event)",
"metadata": "root.QVersionTreeScene.keyPressEvent",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 1041
},
{
"content": " def selectionChanged(self):\n if not self.emit_selection:\n return\n\n selected_items = self.selectedItems()\n if len(selected_items) == 1:\n # emit versionSelected selected_id\n self.emit(QtCore.SIGNAL('versionSelected(int,bool,bool,bool,bool)'),\n selected_items[0].id, self.select_by_click, \n True, False, False)\n else:\n # emit versionSelected -1\n for item in selected_items:\n if item.text.isEditable:\n item.text.setEditable(False)\n self.emit(QtCore.SIGNAL('versionSelected(int,bool,bool,bool,bool)'),\n -1, self.select_by_click, True, False, False)\n\n if len(selected_items) == 2:\n self.emit(\n QtCore.SIGNAL('twoVersionsSelected(int, int)'),\n selected_items[0].id, selected_items[1].id)",
"metadata": "root.QVersionTreeScene.selectionChanged",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 1065
},
{
"content": " def double_click(self, version_id):\n self.mouseGrabberItem().ungrabMouse()\n self.emit(QtCore.SIGNAL('versionSelected(int,bool,bool,bool,bool)'),\n version_id, self.select_by_click, True, False, True)",
"metadata": "root.QVersionTreeScene.double_click",
"header": "['class', 'QVersionTreeScene', '(', 'QInteractiveGraphicsScene', ')', ':', '___EOS___']",
"index": 1088
},
{
"content": "class QVersionTreeView(QInteractiveGraphicsView, BaseView):\n \"\"\"\n QVersionTreeView inherits from QInteractiveGraphicsView that will\n handle drawing of versions layout output from Dotty\n \n \"\"\"\n\n\n \n \n\n \n \n\n\n \n \n \n \n \n \n\n\n\n\n\n",
"metadata": "root.QVersionTreeView",
"header": "['module', '___EOS___']",
"index": 1093
},
{
"content": " def __init__(self, parent=None):\n \"\"\" QVersionTreeView(parent: QWidget) -> QVersionTreeView\n Initialize the graphics view and its properties\n \n \"\"\"\n QInteractiveGraphicsView.__init__(self, parent)\n BaseView.__init__(self)\n self.controller = None\n self.set_title('Version Tree')\n self.setScene(QVersionTreeScene(self))\n self.versionProp = QVersionPropOverlay(self, self.viewport())\n self.versionProp.hide()\n self._view_fitted = False",
"metadata": "root.QVersionTreeView.__init__",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1100
},
{
"content": " def set_default_layout(self):\n from vistrails.gui.collection.workspace import QWorkspaceWindow\n from vistrails.gui.version_prop import QVersionProp\n self.set_palette_layout(\n {QtCore.Qt.LeftDockWidgetArea: QWorkspaceWindow,\n QtCore.Qt.RightDockWidgetArea: QVersionProp,\n })",
"metadata": "root.QVersionTreeView.set_default_layout",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1114
},
{
"content": " def set_action_links(self):\n self.action_links = \\\n {\n 'publishWeb' : ('version_changed', self.check_publish_db),\n 'publishPaper': ('version_changed', self.check_publish),\n 'redo': ('version_changed', self.can_redo),\n 'undo': ('version_changed', self.can_undo),\n 'execute': ('pipeline_changed', self.can_execute)\n }",
"metadata": "root.QVersionTreeView.set_action_links",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1122
},
{
"content": " def set_action_defaults(self):\n self.action_defaults['execute'] = \\\n [('setEnabled', True, self.set_action_execute_default)]",
"metadata": "root.QVersionTreeView.set_action_defaults",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1132
},
{
"content": " def set_action_execute_default(self):\n if self.controller:\n if self.controller.current_pipeline:\n return len(self.controller.current_pipeline.modules) > 0\n return False",
"metadata": "root.QVersionTreeView.set_action_execute_default",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1136
},
{
"content": " def check_publish_db(self, versionId):\n loc = self.controller.locator\n result = False\n if hasattr(loc,'host'):\n result = True \n return result and self.check_publish(versionId)",
"metadata": "root.QVersionTreeView.check_publish_db",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1142
},
{
"content": " def check_publish(self, versionId):\n return versionId > 0 ",
"metadata": "root.QVersionTreeView.check_publish",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1149
},
{
"content": " def can_redo(self, versionId):\n return self.controller and self.controller.can_redo()",
"metadata": "root.QVersionTreeView.can_redo",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1152
},
{
"content": " def can_undo(self, versionId):\n return self.controller and self.controller.can_undo()",
"metadata": "root.QVersionTreeView.can_undo",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1155
},
{
"content": " def can_execute(self, pipeline):\n return pipeline is not None and len(pipeline.modules) > 0",
"metadata": "root.QVersionTreeView.can_execute",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1158
},
{
"content": " def execute(self):\n res = self.controller.execute_user_workflow()\n from vistrails.gui.vistrails_window import _app\n if len(res[0][0].errors) > 0:\n _app.qactions['pipeline'].trigger()\n _app.notify('execution_updated')",
"metadata": "root.QVersionTreeView.execute",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1161
},
{
"content": " def publish_to_web(self):\n from vistrails.gui.publishing import QVersionEmbed\n panel = QVersionEmbed.instance()\n panel.switchType('Wiki')\n panel.set_visible(True)",
"metadata": "root.QVersionTreeView.publish_to_web",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1168
},
{
"content": " def publish_to_paper(self):\n from vistrails.gui.publishing import QVersionEmbed\n panel = QVersionEmbed.instance()\n panel.switchType('Latex')\n panel.set_visible(True)",
"metadata": "root.QVersionTreeView.publish_to_paper",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1174
},
{
"content": " def selectModules(self):\n \"\"\" selectModules() -> None\n Overrides parent class to disable text items if you click on background\n\n \"\"\"\n if self.canSelectRectangle:\n br = self.selectionBox.sceneBoundingRect()\n else:\n br = QtCore.QRectF(self.startSelectingPos,\n self.startSelectingPos)\n items = self.scene().items(br)\n if len(items)==0 or items==[self.selectionBox]:\n for item in self.scene().selectedItems():\n if isinstance(item, QGraphicsVersionItem):\n item.text.clearFocus()\n qt_super(QVersionTreeView, self).selectModules()",
"metadata": "root.QVersionTreeView.selectModules",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1180
},
{
"content": " def set_title(self, title):\n BaseView.set_title(self, title)\n self.setWindowTitle(title)",
"metadata": "root.QVersionTreeView.set_title",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1197
},
{
"content": " def set_controller(self, controller):\n self._view_fitted = False\n oldController = self.controller\n if oldController != controller:\n if oldController is not None:\n self.disconnect(oldController,\n QtCore.SIGNAL('vistrailChanged()'),\n self.vistrailChanged)\n self.disconnect(oldController,\n QtCore.SIGNAL('invalidateSingleNodeInVersionTree'),\n self.single_node_changed)\n self.disconnect(oldController,\n QtCore.SIGNAL('notesChanged()'),\n self.notesChanged)\n self.controller = controller\n self.scene().controller = controller\n self.connect(controller,\n QtCore.SIGNAL('vistrailChanged()'),\n self.vistrailChanged)\n self.connect(controller,\n QtCore.SIGNAL('invalidateSingleNodeInVersionTree'),\n self.single_node_changed)\n self.connect(controller,\n QtCore.SIGNAL(\"notesChanged()\"),\n self.notesChanged)\n if controller:\n self.versionProp.updateController(controller)\n self.scene().setupScene(controller)\n # self.vistrailChanged()\n # self.versionProp.updateController(controller)\n # self.versionView.versionProp.updateController(controller)",
"metadata": "root.QVersionTreeView.set_controller",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1201
},
{
"content": " def vistrailChanged(self):\n \"\"\" vistrailChanged() -> None\n An action was performed on the current vistrail\n \n \"\"\"\n from vistrails.gui.vistrails_window import _app\n select_node = True\n if _app._previous_view and _app._previous_view.window() != self.window():\n select_node = False\n self.scene().setupScene(self.controller, select_node)\n if self.controller and self.controller.reset_version_view:\n self.scene().fitToAllViews()\n if self.controller:\n # self.versionProp.updateVersion(self.controller.current_version)\n self.versionProp.updateVersion(self.controller.current_version)\n self.emit(QtCore.SIGNAL(\"vistrailChanged()\"))",
"metadata": "root.QVersionTreeView.vistrailChanged",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1233
},
{
"content": " def single_node_changed(self, old_version, new_version):\n \"\"\" single_node_changed(old_version, new_version)\n Handle single node change on version tree by not recomputing\n entire scene.\n\n \"\"\"\n self.scene().update_scene_single_node_change(self.controller,\n old_version,\n new_version)\n if self.controller and self.controller.reset_version_view:\n self.scene().fitToAllViews()\n if self.controller:\n # self.versionProp.updateVersion(self.controller.current_version)\n self.versionProp.updateVersion(self.controller.current_version)\n self.emit(QtCore.SIGNAL(\"vistrailChanged()\"))",
"metadata": "root.QVersionTreeView.single_node_changed",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1250
},
{
"content": " def notesChanged(self):\n \"\"\" notesChanged() -> None\n The notes for the current vistrail version changed\n\n \"\"\"\n if self.controller:\n self.versionProp.updateVersion(self.controller.current_version)",
"metadata": "root.QVersionTreeView.notesChanged",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1266
},
{
"content": " def select_current_version(self):\n self.scene().setupScene(self.controller)",
"metadata": "root.QVersionTreeView.select_current_version",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1274
},
{
"content": " def viewSelected(self):\n if not self._view_fitted and self.isVisible():\n # We only do this once after a set_controller() call\n self.zoomToFit()\n self._view_fitted = True",
"metadata": "root.QVersionTreeView.viewSelected",
"header": "['class', 'QVersionTreeView', '(', 'QInteractiveGraphicsView', ',', 'BaseView', ')', ':', '___EOS___']",
"index": 1277
}
]
| [
{
"span": "from vistrails.core.vistrail.vistrail import Vistrail",
"start_line": 56,
"start_column": 0,
"end_line": 56,
"end_column": 53
}
]
| []
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|
Testing equality to None | elmar-hinz/Python.Vii/tests/Dispatcher_Test.py | [
{
"content": " def test__init__(self):\n fixture = Dispatcher()\n assert fixture.actionManager == None\n assert fixture.currentMode == None\n assert fixture.currentAction == None\n assert fixture.currentCommand == None\n assert fixture.forceTokenToString == False",
"metadata": "root.Dispatcher_Test.test__init__",
"header": "['class', 'Dispatcher_Test', ':', '___EOS___']",
"index": 26
},
{
"content": " def test_stepInit(self):\n assert self.fixture.currentMode == None\n assert self.fixture.currentAction == None\n self.fixture.stepInit(\"a\")\n assert self.fixture.currentMode == \"normal\"\n assert self.fixture.currentAction == self.action\n command = self.fixture.currentCommand\n assert command.__class__ == Command",
"metadata": "root.Dispatcher_Test.test_stepInit",
"header": "['class', 'Dispatcher_Test', ':', '___EOS___']",
"index": 38
}
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Unreachable code | JoelBender/bacpypes/pcap_tools/WhoIsRouterToNetworkSummaryFilter.py | [
{
"content": "#!/usr/bin/python\n\n\"\"\"\nSummarize Who-Is-Router-To-Network Notifications\n\"\"\"\n\nimport sys\nfrom collections import defaultdict\n\nfrom bacpypes.debugging import Logging, function_debugging, ModuleLogger\nfrom bacpypes.consolelogging import ConsoleLogHandler\n\nfrom bacpypes.pdu import Address\nfrom bacpypes.analysis import trace, strftimestamp, Tracer\nfrom bacpypes.npdu import WhoIsRouterToNetwork\n\n# some debugging\n_debug = 0\n_log = ModuleLogger(globals())\n\n# globals\nfilterSource = None\nfilterDestination = None\nfilterHost = None\n\n# dictionary of requests\nrequests = defaultdict(int)\nnetworks = defaultdict(list)\n\n#\n# Match\n#\n\n\n#\n# WhoIsRouterToNetworkSummary\n#\n\n\n#\n# __main__\n#\n\ntry:\n if ('--debug' in sys.argv):\n indx = sys.argv.index('--debug')\n for i in range(indx+1, len(sys.argv)):\n ConsoleLogHandler(sys.argv[i])\n del sys.argv[indx:]\n\n if _debug: _log.debug(\"initialization\")\n\n # check for src\n if ('--src' in sys.argv):\n i = sys.argv.index('--src')\n filterSource = Address(sys.argv[i+1])\n if _debug: _log.debug(\" - filterSource: %r\", filterSource)\n del sys.argv[i:i+2]\n\n # check for dest\n if ('--dest' in sys.argv):\n i = sys.argv.index('--dest')\n filterDestination = Address(sys.argv[i+1])\n if _debug: _log.debug(\" - filterDestination: %r\", filterDestination)\n del sys.argv[i:i+2]\n\n # check for host\n if ('--host' in sys.argv):\n i = sys.argv.index('--host')\n filterHost = Address(sys.argv[i+1])\n if _debug: _log.debug(\" - filterHost: %r\", filterHost)\n del sys.argv[i:i+2]\n\n # trace the file(s)\n for fname in sys.argv[1:]:\n trace(fname, [WhoIsRouterToNetworkSummary])\n\n # sort the result, descending order by count\n items = requests.items()\n items.sort(lambda x, y: cmp(y[1], x[1]))\n\n # print everything out\n print \"%-20s %5s\" % (\"Address\", \"Count\")\n for key, count in items:\n print \"%-20s %5d\" % (key, count)\n\n # count the number of times of each network\n net_count = defaultdict(int)\n for net in networks[key]:\n net_count[net] += 1\n\n # sort descending\n net_count = net_count.items()\n net_count.sort(lambda x, y: cmp(y[1], x[1]))\n\n for net, count in net_count:\n print \" %5d %5d\" % (net, count)\n\nexcept KeyboardInterrupt:\n pass\nexcept Exception, e:\n _log.exception(\"an error has occurred: %s\", e)\nfinally:\n if _debug: _log.debug(\"finally\")\n\n",
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"index": 0
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