thepurpleowl/codequeries · Datasets at Hugging Face

query_name stringlengths 13 55	code_file_path stringlengths 14 194	context_blocks list	answer_spans list	supporting_fact_spans list	example_type int8 0 1	single_hop bool 2 classes	subtokenized_input_sequence list	label_sequence list
Unused import	chromaway/ngcccbase/ngcccbase/tests/test_txcons.py	[ { "content": "#!/usr/bin/env python\n\nimport os\nimport unittest\n\nfrom pycoin.tx.script import opcodes, tools\n\nfrom coloredcoinlib import (OBColorDefinition, ColorSet,\n SimpleColorValue, ColorTarget, InvalidColorIdError,\n UNCOLORED_MARKER, ZeroSelectError)\n\nfrom ngcccbase.asset import AssetDefinition, AdditiveAssetValue, AssetTarget\nfrom ngcccbase.txcons import (InvalidTargetError, InvalidTransformationError, \n InsufficientFundsError, BasicTxSpec,\n SimpleOperationalTxSpec, RawTxSpec,\n TransactionSpecTransformer)\nfrom ngcccbase.pwallet import PersistentWallet\n\n\n\n\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestTxcons(unittest.TestCase):\n\n\n\n\n\n\n\n", "metadata": "root.TestTxcons", "header": "['module', '___EOS___']", "index": 20 }, { "content": " def setUp(self):\n self.path = \":memory:\"\n self.pwallet = PersistentWallet(self.path)\n self.config = {'dw_master_key': 'test', 'testnet': True, 'ccc': {\n 'colordb_path' : self.path}, 'bip0032': False }\n self.pwallet.wallet_config = self.config\n self.pwallet.init_model()\n self.model = self.pwallet.get_model()\n self.colormap = self.model.get_color_map()\n\n self.colordesc0 = \"obc:color0:0:0\"\n self.colordesc1 = \"obc:color1:0:0\"\n self.colordesc2 = \"obc:color2:0:0\"\n\n # add some colordescs\n self.colorid0 = self.colormap.resolve_color_desc(self.colordesc0)\n self.colorid1 = self.colormap.resolve_color_desc(self.colordesc1)\n self.colorid2 = self.colormap.resolve_color_desc(self.colordesc2)\n\n self.colordef0 = OBColorDefinition(\n self.colorid0, {'txhash': 'color0', 'outindex': 0})\n self.colordef1 = OBColorDefinition(\n self.colorid1, {'txhash': 'color1', 'outindex': 0})\n self.colordef2 = OBColorDefinition(\n self.colorid2, {'txhash': 'color2', 'outindex': 0})\n\n self.asset_config = {\n 'monikers': ['blue'],\n 'color_set': [self.colordesc0],\n }\n self.basset_config = {\n 'monikers': ['bitcoin'],\n 'color_set': [''],\n }\n self.asset = AssetDefinition(self.colormap, self.asset_config)\n self.basset = AssetDefinition(self.colormap, self.basset_config)\n self.basic = BasicTxSpec(self.model)\n self.bbasic = BasicTxSpec(self.model)\n\n wam = self.model.get_address_manager()\n self.address0 = wam.get_new_address(self.asset.get_color_set())\n self.addr0 = self.address0.get_address()\n\n self.bcolorset = ColorSet(self.colormap, [''])\n self.baddress = wam.get_new_address(self.bcolorset)\n self.baddr = self.baddress.get_address()\n\n self.assetvalue0 = AdditiveAssetValue(asset=self.asset, value=5)\n self.assetvalue1 = AdditiveAssetValue(asset=self.asset, value=6)\n self.assetvalue2 = AdditiveAssetValue(asset=self.asset, value=7)\n self.bassetvalue = AdditiveAssetValue(asset=self.basset, value=8)\n self.assettarget0 = AssetTarget(self.addr0, self.assetvalue0)\n self.assettarget1 = AssetTarget(self.addr0, self.assetvalue1)\n self.assettarget2 = AssetTarget(self.addr0, self.assetvalue2)\n self.bassettarget = AssetTarget(self.baddr, self.bassetvalue)\n\n self.atargets = [self.assettarget0, self.assettarget1, self.assettarget2]\n\n # add some targets\n self.colorvalue0 = SimpleColorValue(colordef=self.colordef0, value=5)\n self.colortarget0 = ColorTarget(self.addr0, self.colorvalue0)\n self.colorvalue1 = SimpleColorValue(colordef=self.colordef0, value=6)\n self.colortarget1 = ColorTarget(self.addr0, self.colorvalue1)\n self.colorvalue2 = SimpleColorValue(colordef=self.colordef0, value=7)\n self.colortarget2 = ColorTarget(self.addr0, self.colorvalue2)\n self.bcolorvalue = SimpleColorValue(colordef=UNCOLORED_MARKER, value=8)\n self.bcolortarget = ColorTarget(self.baddr, self.bcolorvalue)\n\n self.targets = [self.colortarget0, self.colortarget1,\n self.colortarget2]\n self.transformer = TransactionSpecTransformer(self.model, self.config)\n self.blockhash = '00000000c927c5d0ee1ca362f912f83c462f644e695337ce3731b9f7c5d1ca8c'\n self.txhash = '4fe45a5ba31bab1e244114c4555d9070044c73c98636231c77657022d76b87f7'", "metadata": "root.TestTxcons.setUp", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 22 }, { "content": " def test_basic(self):\n self.assertRaises(InvalidTargetError, self.basic.is_monocolor)\n self.assertRaises(InvalidTargetError,\n self.basic.add_target, self.colortarget0)\n self.basic.add_target(self.assettarget0)\n self.basic.add_target(self.assettarget1)\n self.basic.add_target(self.assettarget2)\n self.assertEqual(self.basic.is_monocolor(), True)\n self.assertEqual(self.basic.is_monoasset(), True)\n self.assertEqual(self.basic.targets, self.atargets)\n self.basic.add_target(self.bassettarget)\n self.assertEqual(self.basic.is_monoasset(), False)\n self.assertEqual(self.basic.is_monocolor(), False)\n self.assertRaises(InvalidTransformationError,\n self.basic.make_operational_tx_spec, self.asset)", "metadata": "root.TestTxcons.test_basic", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 96 }, { "content": " def add_coins(self):\n script = tools.compile(\n \"OP_DUP OP_HASH160 {0} OP_EQUALVERIFY OP_CHECKSIG\".format(\n self.address0.rawPubkey().encode(\"hex\"))).encode(\"hex\")\n\n self.model.utxo_man.store.add_utxo(self.addr0, self.txhash,\n 0, 100, script)\n\n script = tools.compile(\n \"OP_DUP OP_HASH160 {0} OP_EQUALVERIFY OP_CHECKSIG\".format(\n self.baddress.rawPubkey().encode(\"hex\"))).encode(\"hex\")\n\n self.model.utxo_man.store.add_utxo(self.baddr, self.txhash,\n 1, 20000, script)\n self.model.ccc.metastore.set_as_scanned(self.colorid0, self.blockhash)\n self.model.ccc.cdstore.add(self.colorid0, self.txhash, 0, 100, '')", "metadata": "root.TestTxcons.add_coins", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 112 }, { "content": " def test_operational(self):\n self.basic.add_target(self.assettarget0)\n self.basic.add_target(self.assettarget1)\n self.basic.add_target(self.assettarget2)\n op = self.transformer.transform_basic(self.basic, 'operational')\n self.assertTrue(self.transformer.classify_tx_spec(op), 'operational')\n self.assertRaises(InvalidTargetError, op.add_target, 1)\n self.assertEqual(ColorTarget.sum(op.get_targets()),\n ColorTarget.sum(self.targets))\n self.assertEqual(op.get_change_addr(self.colordef0), self.addr0)\n self.assertEqual(op.get_change_addr(UNCOLORED_MARKER), self.baddr)\n self.assertEqual(op.get_required_fee(1).get_value(), 10000)\n self.assertRaises(InvalidColorIdError, op.get_change_addr,\n self.colordef1)\n cv = SimpleColorValue(colordef=self.colordef0, value=0)\n self.assertRaises(ZeroSelectError, op.select_coins, cv)\n cv = SimpleColorValue(colordef=self.colordef0, value=5)\n self.assertRaises(InsufficientFundsError, op.select_coins, cv)\n self.add_coins()\n self.assertEqual(op.select_coins(cv)[1].get_value(), 100)", "metadata": "root.TestTxcons.test_operational", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 130 }, { "content": " def test_composed(self):\n self.basic.add_target(self.assettarget0)\n self.basic.add_target(self.assettarget1)\n self.basic.add_target(self.assettarget2)\n self.add_coins()\n op = self.transformer.transform(self.basic, 'operational')\n self.assertEqual(op.get_change_addr(self.colordef0), self.addr0)\n self.assertEqual(op.get_change_addr(UNCOLORED_MARKER), self.baddr)\n comp = self.transformer.transform(op, 'composed')\n self.assertTrue(self.transformer.classify_tx_spec(comp), 'composed')\n signed = self.transformer.transform(comp, 'signed')\n self.assertTrue(self.transformer.classify_tx_spec(signed), 'signed')\n self.assertEqual(len(signed.get_hex_txhash()), 64)\n txdata = signed.get_tx_data()\n same = RawTxSpec.from_tx_data(self.model, txdata)\n self.assertEqual(same.get_hex_tx_data(), signed.get_hex_tx_data())\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform,\n signed, '')", "metadata": "root.TestTxcons.test_composed", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 152 }, { "content": " def test_other(self):\n self.assertEqual(self.transformer.classify_tx_spec(1), None)\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_basic,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_operational,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_composed,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_signed,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform,\n '', '')\n self.add_coins()\n self.bbasic.add_target(self.bassettarget)\n signed = self.transformer.transform(self.bbasic, 'signed')\n self.assertEqual(len(signed.get_hex_txhash()), 64)", "metadata": "root.TestTxcons.test_other", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 172 } ]	[ { "span": "import os", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 9 }, { "span": "from pycoin.tx.script import opcodes, tools", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 43 }, { "span": "from ngcccbase.txcons import (InvalidTargetError, InvalidTransformationError, \n InsufficientFundsError, BasicTxSpec,\n SimpleOperationalTxSpec, RawTxSpec,\n TransactionSpecTransformer)", "start_line": 12, "start_column": 0, "end_line": 15, "end_column": 57 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#!", "/", "usr", "/", "bin", "/", "env", " ", "python_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "os_", 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Unused import	codesters/codesters/resources/views.py	[ { "content": "from django.core.exceptions import ObjectDoesNotExist\nfrom django.shortcuts import get_object_or_404, render_to_response\nfrom django.core.urlresolvers import reverse_lazy, reverse\nfrom django.contrib import messages\nfrom django.utils.datastructures import SortedDict\nfrom django.http import HttpResponse, HttpResponseRedirect, Http404\nfrom django.template import RequestContext\nfrom django.views.generic import TemplateView, ListView, DetailView, CreateView, UpdateView, RedirectView\nfrom guardian.mixins import LoginRequiredMixin, PermissionRequiredMixin\nfrom braces.views import SetHeadlineMixin\nfrom djangoratings.views import AddRatingView\n\nfrom django.contrib.auth.models import User\nfrom django.contrib.contenttypes.models import ContentType\nfrom .models import Resource, Topic, ResourceType, FeaturedResource\nfrom profiles.models import SavedResource, TopicFollow\n\nfrom .forms import ResourceCreateForm, ResourceUpdateForm, TopicCreateForm, TopicUpdateForm\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def resource_home(request):\n topics = Topic.objects.filter(resource__title__isnull=False).distinct().order_by('name')\n\n #Check various session values for user details and show appropriate info\n #if request.session.get('no_name', False):\n # messages.info(request, 'Please fill in your profile details by going to your account settings.')\n # request.session['no_name'] = False\n\n if request.session.get('no_topic', False):\n messages.warning(request, 'It seems you are not following any topic. Follow topics by clicking on it below and get personalized recommendations')\n request.session['no_topic'] = False\n\n ctx = {\n 'topics': topics,\n }\n return render_to_response('resources/resource_home.html', ctx, context_instance=RequestContext(request))", "metadata": "root.resource_home", "header": "['module', '___EOS___']", "index": 19 }, { "content": "def rate_resource(request, object_id, score):\n model = 'resource'\n app_label = 'resources'\n field_name ='rating'\n try:\n content_type = ContentType.objects.get(model=model, app_label=app_label)\n except ContentType.DoesNotExist:\n raise Http404('Invalid `model` or `app_label`.')\n params = {\n 'content_type_id': content_type.id,\n 'object_id': object_id,\n 'field_name': field_name,\n 'score': score,\n }\n response = AddRatingView()(request, params)\n if response.status_code == 200:\n if response.content == 'Vote recorded.':\n messages.success(request, 'Thanks, Your Vote is recorded')\n else:\n messages.error(request, 'Sorry, Something went wrong')\n return HttpResponseRedirect(request.META['HTTP_REFERER'])", "metadata": "root.rate_resource", "header": "['module', '___EOS___']", "index": 36 }, { "content": "class ResourceSaveView(LoginRequiredMixin, RedirectView):\n permanent = False\n", "metadata": "root.ResourceSaveView", "header": "['module', '___EOS___']", "index": 59 }, { "content": " def get_redirect_url(self, pk):\n resource = get_object_or_404(Resource, pk=pk)\n SavedResource.objects.get_or_create(user=self.request.user, resource=resource)\n if self.request.META['HTTP_REFERER']:\n return self.request.META['HTTP_REFERER']\n else:\n return reverse_lazy('resource_detail', kwargs={'pk':pk})", "metadata": "root.ResourceSaveView.get_redirect_url", "header": "['class', 'ResourceSaveView', '(', 'LoginRequiredMixin', ',', 'RedirectView', ')', ':', '___EOS___']", "index": 62 }, { "content": "class ResourceFeatureView(LoginRequiredMixin, RedirectView):\n permanent = False\n permission_required = 'resources.change_featuredresource'\n return_403 = True\n", "metadata": "root.ResourceFeatureView", "header": "['module', '___EOS___']", "index": 71 }, { "content": " def get_redirect_url(self, pk, slug):\n resource = get_object_or_404(Resource, pk=pk)\n topic = get_object_or_404(Topic, slug=slug)\n resource.make_featured(topic=topic)\n if self.request.META['HTTP_REFERER']:\n return self.request.META['HTTP_REFERER']\n else:\n return reverse_lazy('resource_detail', kwargs={'pk':pk})", "metadata": "root.ResourceFeatureView.get_redirect_url", "header": "['class', 'ResourceFeatureView', '(', 'LoginRequiredMixin', ',', 'RedirectView', ')', ':', '___EOS___']", "index": 76 }, { "content": "class SidebarMixin(object):", "metadata": "root.SidebarMixin", "header": "['module', '___EOS___']", "index": 86 }, { "content": " def get_context_data(self, kwargs):\n context = super(SidebarMixin, self).get_context_data(kwargs)\n topics = Topic.objects.filter(resource__title__isnull=False).distinct().order_by('name')\n context['topics'] = topics\n return context", "metadata": "root.SidebarMixin.get_context_data", "header": "['class', 'SidebarMixin', '(', 'object', ')', ':', '___EOS___']", "index": 87 }, { "content": "class ResourceAllListView(SetHeadlineMixin, SidebarMixin, ListView):\n context_object_name = 'resources'\n template_name = 'resources/resource_list.html'\n paginate_by = 12\n", "metadata": "root.ResourceAllListView", "header": "['module', '___EOS___']", "index": 94 }, { "content": " def get_queryset(self):\n level_to_get = None\n if 'level' in self.request.GET:\n level_to_get = self.request.GET['level']\n resources = Resource.objects.all()\n if level_to_get:\n resources = resources.filter(level=level_to_get)\n self.headline = 'All Resources'\n return resources", "metadata": "root.ResourceAllListView.get_queryset", "header": "['class', 'ResourceAllListView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'ListView', ')', ':', '___EOS___']", "index": 99 }, { "content": "class TopicFollowView(LoginRequiredMixin, RedirectView):\n permanent = False\n", "metadata": "root.TopicFollowView", "header": "['module', '___EOS___']", "index": 110 }, { "content": " def get_redirect_url(self, slug):\n topic = get_object_or_404(Topic, slug=slug)\n try:\n tf = TopicFollow.objects.get(user=self.request.user, topic=topic)\n tf.delete()\n messages.success(self.request, 'You have stopped following this topic.')\n except TopicFollow.DoesNotExist:\n TopicFollow.objects.create(user=self.request.user, topic=topic)\n messages.success(self.request, 'You are now following this topic.')\n return reverse_lazy('resource_topic_home', kwargs={'slug':slug})", "metadata": "root.TopicFollowView.get_redirect_url", "header": "['class', 'TopicFollowView', '(', 'LoginRequiredMixin', ',', 'RedirectView', ')', ':', '___EOS___']", "index": 113 }, { "content": "def topic_home(request, slug):\n current_topic = get_object_or_404(Topic, slug=slug)\n headline = \"\"\"Learn \"\"\" + unicode(current_topic.name).capitalize() + \"\"\" - from the best tutorials and online courses\"\"\"\n topics = Topic.objects.filter(resource__title__isnull=False).distinct().order_by('name')\n\n ctx = {\n 'current_topic': current_topic,\n 'headline': headline,\n 'topics': topics\n }\n\n resourcetypes = []\n res_types = ResourceType.objects.all().order_by('name')\n for res_type in res_types:\n try:\n result = FeaturedResource.objects.get(topic=current_topic, resource_type=res_type)\n resourcetypes.append((result.resource_type.slug, result.resource))\n except FeaturedResource.DoesNotExist:\n result = current_topic.resource_set.filter(resource_type=res_type).order_by('-rating_votes')\n if len(result) > 0:\n resourcetypes.append((result[0].resource_type.slug, result[0]))\n ctx['resourcetypes'] = SortedDict(resourcetypes)\n\n return render_to_response('resources/topic_home.html', ctx, context_instance=RequestContext(request))", "metadata": "root.topic_home", "header": "['module', '___EOS___']", "index": 124 }, { "content": "class ResourceTopicListView(SetHeadlineMixin, SidebarMixin, ListView):\n context_object_name = 'resources'\n template_name = 'resources/resource_list.html'\n paginate_by = 12\n\n", "metadata": "root.ResourceTopicListView", "header": "['module', '___EOS___']", "index": 150 }, { "content": " def get_queryset(self):\n level_to_get = None\n res_type = None\n slug = self.kwargs['slug']\n try:\n res_type = self.kwargs['res_type']\n except KeyError:\n pass\n if 'level' in self.request.GET:\n level_to_get = self.request.GET['level']\n topic = get_object_or_404(Topic, slug=slug)\n resources = topic.resource_set.all()\n self.headline = 'All ' + unicode(topic.name).capitalize() +' Resources'\n if res_type:\n res_type = get_object_or_404(ResourceType, slug=res_type)\n resources = resources.filter(resource_type=res_type)\n self.headline = unicode(topic.name).capitalize() +' Resources' + ' (' + unicode(res_type.name) + 's)'\n if level_to_get and level_to_get != 'all':\n resources = resources.filter(level=level_to_get)\n return resources", "metadata": "root.ResourceTopicListView.get_queryset", "header": "['class', 'ResourceTopicListView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'ListView', ')', ':', '___EOS___']", "index": 155 }, { "content": " def get_context_data(self, kwargs):\n context = super(ResourceTopicListView, self).get_context_data(kwargs)\n topic = get_object_or_404(Topic, slug=self.kwargs['slug'])\n context['current_topic'] = topic\n return context", "metadata": "root.ResourceTopicListView.get_context_data", "header": "['class', 'ResourceTopicListView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'ListView', ')', ':', '___EOS___']", "index": 176 }, { "content": "class ResourceDetailView(SetHeadlineMixin, SidebarMixin, DetailView):\n model = Resource\n context_object_name = 'resource'\n template_name = 'resources/resource_detail.html'\n\n", "metadata": "root.ResourceDetailView", "header": "['module', '___EOS___']", "index": 183 }, { "content": " def get_object(self):\n resource = super(ResourceDetailView, self).get_object()\n self.headline = unicode(resource.title) + \"\"\" (\"\"\" + unicode(resource.resource_type) + \"\"\") \| Resource\"\"\"\n return resource", "metadata": "root.ResourceDetailView.get_object", "header": "['class', 'ResourceDetailView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'DetailView', ')', ':', '___EOS___']", "index": 188 }, { "content": " def get_context_data(self, kwargs):\n context = super(ResourceDetailView, self).get_context_data(**kwargs)\n return context", "metadata": "root.ResourceDetailView.get_context_data", "header": "['class', 'ResourceDetailView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'DetailView', ')', ':', '___EOS___']", "index": 193 }, { "content": "class ResourceCreateView(LoginRequiredMixin, SetHeadlineMixin, SidebarMixin, CreateView):\n form_class = ResourceCreateForm\n model = Resource\n headline = 'Add new Resource'\n", "metadata": "root.ResourceCreateView", "header": "['module', '___EOS___']", "index": 198 }, { "content": " def form_valid(self, form):\n form.instance.created_by = self.request.user\n return super(ResourceCreateView, self).form_valid(form)", "metadata": "root.ResourceCreateView.form_valid", "header": "['class', 'ResourceCreateView', '(', 'LoginRequiredMixin', ',', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'CreateView', ')', ':', '___EOS___']", "index": 203 }, { "content": "class ResourceUpdateView(LoginRequiredMixin, PermissionRequiredMixin, SetHeadlineMixin, SidebarMixin, UpdateView):\n form_class = ResourceUpdateForm\n model = Resource\n headline = 'Edit Resource'\n permission_required = 'resources.change_resource'\n return_403 = True", "metadata": "root.ResourceUpdateView", "header": "['module', '___EOS___']", "index": 208 }, { "content": "class TopicCreateView(SetHeadlineMixin, SidebarMixin, CreateView):\n form_class = TopicCreateForm\n template_name = 'resources/topic_form.html'\n permission_required = 'resources.add_topic'\n headline = 'Create New Topic'", "metadata": "root.TopicCreateView", "header": "['module', '___EOS___']", "index": 216 }, { "content": "class TopicUpdateView(PermissionRequiredMixin, SetHeadlineMixin, SidebarMixin, UpdateView):\n form_class = TopicUpdateForm\n model = Topic\n template_name = 'resources/topic_form.html'\n permission_required = 'resources.change_topic'\n render_403 = True\n return_403 = True\n headline = 'Edit Topic'", "metadata": "root.TopicUpdateView", "header": "['module', '___EOS___']", "index": 223 } ]	[ { "span": "from django.core.exceptions import ObjectDoesNotExist", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 53 }, { "span": "from django.core.urlresolvers import reverse_lazy, reverse", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 58 }, { "span": "from django.http import HttpResponse, HttpResponseRedirect, Http404", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 67 }, { "span": "from django.views.generic import TemplateView, ListView, DetailView, CreateView, UpdateView, RedirectView", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 105 }, { "span": "from django.contrib.auth.models import User", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 43 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "from_", "django_", "._", "core_", "._", "exceptions_", "import_", "Object", "Do", "es", "Not", "Exist_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "shortcuts_", "import_", "get", "\\u", "object\\u", "or", "\\u", "404_", ",_", "render", "\\u", "to", "\\u", "response_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "core_", "._", "urlresolvers_", "import_", "reverse", "\\u", "lazy_", ",_", "reverse_", 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Insecure temporary file	deanhiller/databus/webapp/play1.3.x/python/Lib/multiprocessing/connection.py	[ { "content": "def arbitrary_address(family):\n '''\n Return an arbitrary free address for the given family\n '''\n if family == 'AF_INET':\n return ('localhost', 0)\n elif family == 'AF_UNIX':\n return tempfile.mktemp(prefix='listener-', dir=get_temp_dir())\n elif family == 'AF_PIPE':\n return tempfile.mktemp(prefix=r'\\\\.\\pipe\\pyc-%d-%d-' %\n (os.getpid(), _mmap_counter.next()))\n else:\n raise ValueError('unrecognized family')", "metadata": "root.arbitrary_address", "header": "['module', '___EOS___']", "index": 47 } ]	[ { "span": "tempfile.mktemp(prefix='listener-', dir=get_temp_dir())", "start_line": 54, "start_column": 15, "end_line": 54, "end_column": 70 }, { "span": "tempfile.mktemp(prefix=r'\\\\.\\pipe\\pyc-%d-%d-' %\n (os.getpid(), _mmap_counter.next()))", "start_line": 56, "start_column": 15, "end_line": 57, "end_column": 67 } ]	[]	1	true	[ "[CLS]_", "Inse", "cure", "_", "temporar", "y_", "file_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "arbitra", "ry", "\\u", "address_", "(_", "family_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "'''", "\\", "10", ";", " ", " ", " ", " ", "Return", " ", "an", " ", "arbitra", "ry", " ", "free", " ", "address", " ", "for", " ", "the", " ", "give", "n", " ", "famil", "y", "\\", "10", ";", " ", " ", " ", " ", "'''_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "family_", "==_", "'", "AF", "\\u", "INE", "T", "'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "(_", "'", "local", "host", "'_", ",_", "0_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "family_", "==_", "'", "AF", "\\u", "UNIX", "'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "tempfile_", "._", "mktemp_", "(_", "prefix_", "=_", "'", "listen", "er", "-'_", ",_", "dir_", "=_", "get", "\\u", "temp", "\\u", "dir_", "(_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "family_", "==_", "'", "AF", "\\u", "PIPE", "'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "tempfile_", "._", "mktemp_", "(_", "prefix_", "=_", "r", "'\\\\\\\\", ".\\\\", "pipe", "\\\\", "pyc", "-%", "d", "-%", "d", "-'_", "%_", "\\u\\u\\uNL\\u\\u\\u_", "(_", "os_", "._", "getpid_", "(_", ")_", ",_", "\\u", "mma", "p", "\\u", "counter_", "._", "next_", "(_", ")_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "raise_", "Value", "Error_", "(_", "'", "unre", "cogni", "zed", " ", "famil", "y", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Except block handles 'BaseException'	lunixbochs/uberserver/tasserver/LegacyUsers.py	[ { "content": "import time, os\n\nimport traceback\ntry:\n\tfrom LegacyBans import BanHandler\nexcept:\n\tprint '-'60\n\tprint traceback.format_exc()\n\tprint '-'60\n\tprint 'Error importing LegacyBans. You might lack sqlalchemy, which you can get from running scripts/fetch_deps.py'\n\tBanHandler = None\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "\t@classmethod\n\tdef fromAccountLine(cls, line):\n\t\tline = line.split()\n\t\tif len(line) < 8: return\n\n\t\ttry:\n\t\t\tusername = line[0]\n\t\t\tpassword = line[1]\n\t\t\taccess = line[2]\n\t\t\tuid = line[3]\n\t\t\tlast_login = int(line[4])\n\t\t\tlast_ip = line[5]\n\t\t\tregister_date = int(line[6])\n\t\t\tcountry = line[7]\n\t\t\t# mapgrades = ' '.join(line[8:]) # no longer used\n\t\t\taccount_id = line[8]\n\t\t\t\n\t\t\tpermissions = int((access[-3:] or '0'), 2)\n\t\t\tingame_time = int((access[-23:-3] or '0'), 2)\n\t\t\tagreement = (len(access) >= 24 and access[-24] == '1')\n\t\t\tbot = (len(access) >= 25 and access[-25] == '1')\n\n\t\t\tif permissions and not agreement: access = 'agreement'\n\t\t\telif permissions == 3: access = 'admin'\n\t\t\telif permissions == 2: access = 'mod'\n\t\t\telif permissions == 1: access = 'user'\n\t\t\telse: access = 'disabled'\n\t\t\n\t\t\treturn cls(username, password, ingame_time, bot, access, uid, last_login, last_ip, register_date, country, account_id)\n\t\texcept:\n\t\t\tprint 'Error reading user:', line", "metadata": "root.User.fromAccountLine", "header": "['class', 'User', '(', 'object', ')', ':', '___EOS___']", "index": 26 } ]	[ { "span": "except:", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 7 }, { "span": "except:", "start_line": 55, "start_column": 2, "end_line": 55, "end_column": 9 } ]	[]	1	true	[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "import_", "time_", ",_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "traceback_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u\t", "_", "from_", "Leg", "ac", "y", "Ban", "s_", "import_", "Ban", "Handler_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u\t", "_", "print_", "'-'_", "_", "60_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "print_", "traceback_", "._", "format\\u", "exc_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "print_", "'-'_", "_", "60_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "print_", "'", "Error", " ", "import", "ing", " ", "Leg", "ac", "y", "Ban", "s", ".", " ", "You", " ", "mig", "ht", " ", "lack", " ", "sqla", "lche", "my", ",", " ", "whi", "ch", " ", "you", " ", "can", " ", "get", " ", "from", " ", "runn", "ing", " ", "scripts", "/", "fetch", "\\u", "dep", "s", ".", "py", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "Ban", "Handler_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "class_", "User_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "@_", "classmethod_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "from", "Account", "Line_", "(_", "cls_", ",_", "line_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u\t", "\t_", "line_", "=_", "line_", "._", "split_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "len_", "(_", "line_", ")_", "<_", "8_", ":_", "return_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u\t", "\t\t_", "username_", "=_", "line_", "[_", "0_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "password_", "=_", "line_", "[_", "1_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "access_", "=_", "line_", "[_", "2_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "uid_", "=_", "line_", "[_", "3_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "last", "\\u", "login_", "=_", "int_", "(_", "line_", "[_", "4_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "last", "\\u", "ip_", "=_", "line_", "[_", "5_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "register", "\\u", "date_", "=_", "int_", "(_", "line_", "[_", "6_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "country_", "=_", "line_", "[_", "7_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", " ", "map", "grades", " ", "=", " ", "'", " ", "'.", "join", "(", "line", "[", "8", ":]", ")", " ", "#", " ", "no", " ", "long", "er", " ", "used_", "\\u\\u\\uNL\\u\\u\\u_", "account", "\\u", "id_", "=_", "line_", "[_", "8_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "permissions_", "=_", "int_", "(_", "(_", "access_", "[_", "-_", "3_", ":_", "]_", "or_", "'", "0", "'_", ")_", ",_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "ing", "ame", "\\u", "time_", "=_", "int_", "(_", "(_", "access_", "[_", "-_", "23_", ":_", "-_", "3_", "]_", "or_", "'", "0", "'_", ")_", ",_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "agreement", "_", "=_", "(_", "len_", "(_", "access_", ")_", ">=_", "24_", "and_", "access_", "[_", "-_", "24_", "]_", "==_", "'", "1", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "bot_", "=_", "(_", "len_", "(_", "access_", ")_", ">=_", "25_", "and_", "access_", "[_", "-_", "25_", "]_", "==_", "'", "1", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "if_", "permissions_", "and_", "not_", "agreement", "_", ":_", "access_", "=_", "'", "agreement", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "elif_", "permissions_", "==_", "3_", ":_", "access_", "=_", "'", "admin", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "elif_", "permissions_", "==_", "2_", ":_", "access_", "=_", "'", "mod", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "elif_", "permissions_", "==_", "1_", ":_", "access_", "=_", "'", "user", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "else_", ":_", "access_", "=_", "'", "disable", "d", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "return_", "cls_", "(_", "username_", ",_", "password_", ",_", "ing", "ame", "\\u", "time_", ",_", "bot_", ",_", "access_", ",_", "uid_", ",_", "last", "\\u", "login_", ",_", "last", "\\u", "ip_", ",_", "register", "\\u", "date_", ",_", "country_", ",_", "account", "\\u", "id_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u\t", "\t\t_", "print_", "'", "Error", " ", "readi", "ng", " ", "user", ":'_", ",_", "line_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused local variable	braintree/braintree_python/tests/integration/test_paypal_account.py	[ { "content": " def test_find_retuns_billing_agreement_id_with_a_paypal_account(self):\n customer_id = Customer.create().customer.id\n payment_method_token = \"paypal-account-\" + str(int(time.time()))\n\n result = PaymentMethod.create({\n \"payment_method_nonce\": Nonces.PayPalBillingAgreement,\n \"customer_id\": customer_id\n })\n self.assertTrue(result.is_success)\n\n paypal_account = PayPalAccount.find(result.payment_method.token)\n self.assertNotEquals(None, paypal_account.billing_agreement_id)", "metadata": "root.TestPayPalAccount.test_find_retuns_billing_agreement_id_with_a_paypal_account", "header": "['class', 'TestPayPalAccount', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 64 }, { "content": " def test_update_can_update_token_and_default(self):\n customer_id = Customer.create().customer.id\n\n credit_card = CreditCard.create({\n \"customer_id\": customer_id,\n \"number\": \"4111111111111111\",\n \"expiration_date\": \"12/2099\"\n }).credit_card\n\n result = PaymentMethod.create({\n \"customer_id\": customer_id,\n \"payment_method_nonce\": Nonces.PayPalFuturePayment\n })\n self.assertTrue(result.is_success)\n\n old_token = result.payment_method.token\n new_token = \"new-token-%s\" % int(round(time.time() * 1000))\n result = PayPalAccount.update(old_token, {\n \"token\": new_token,\n \"options\": {\"make_default\": True}\n })\n\n self.assertTrue(result.is_success)\n updated_account = PayPalAccount.find(new_token)\n self.assertEquals(updated_account.default, True)", "metadata": "root.TestPayPalAccount.test_update_can_update_token_and_default", "header": "['class', 'TestPayPalAccount', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 102 }, { "content": " def test_update_returns_validation_errors(self):\n payment_method_token = \"payment-token-%s\" % int(round(time.time() * 1000))\n customer_id = Customer.create().customer.id\n credit_card = CreditCard.create({\n \"token\": payment_method_token,\n \"customer_id\": customer_id,\n \"number\": \"4111111111111111\",\n \"expiration_date\": \"12/2099\"\n }).credit_card\n\n result = PaymentMethod.create({\n \"customer_id\": customer_id,\n \"payment_method_nonce\": Nonces.PayPalFuturePayment\n })\n self.assertTrue(result.is_success)\n\n old_token = result.payment_method.token\n result = PayPalAccount.update(old_token, {\n \"token\": payment_method_token,\n })\n\n self.assertFalse(result.is_success)\n self.assertEquals(\n ErrorCodes.PayPalAccount.TokenIsInUse,\n result.errors.for_object(\"paypal_account\").on(\"token\")[0].code\n )\n\n result = PayPalAccount.update(old_token, {\n \"token\": payment_method_token,\n })\n\n self.assertFalse(result.is_success)\n self.assertEquals(\n ErrorCodes.PayPalAccount.TokenIsInUse,\n result.errors.for_object(\"paypal_account\").on(\"token\")[0].code\n )", "metadata": "root.TestPayPalAccount.test_update_returns_validation_errors", "header": "['class', 'TestPayPalAccount', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 128 } ]	[ { "span": "payment_method_token ", "start_line": 66, "start_column": 8, "end_line": 66, "end_column": 28 }, { "span": "credit_card ", "start_line": 105, "start_column": 8, "end_line": 105, "end_column": 19 }, { "span": "credit_card ", "start_line": 131, "start_column": 8, "end_line": 131, "end_column": 19 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "class_", "Test", "Pay", "Pal", "Account_", "(_", "unittest_", "._", "Test", "Case_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "find", "\\u", "ret", "uns", "\\u", "bill", "ing", "\\u", "agreement", "\\u", "id", "\\u", "with", "\\u", "a", "\\u", "paypal", "\\u", "account_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", 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Suspicious unused loop iteration variable	azoft-dev-team/imagrium/env/Lib/test/test_complex.py	[ { "content": " def test_subclass(self):\n class xcomplex(complex):\n def __add__(self,other):\n return xcomplex(complex(self) + other)\n __radd__ = __add__\n\n def __sub__(self,other):\n return xcomplex(complex(self) + other)\n __rsub__ = __sub__\n\n def __mul__(self,other):\n return xcomplex(complex(self) * other)\n __rmul__ = __mul__\n\n def __div__(self,other):\n return xcomplex(complex(self) / other)\n\n def __rdiv__(self,other):\n return xcomplex(other / complex(self))\n\n __truediv__ = __div__\n __rtruediv__ = __rdiv__\n\n def __floordiv__(self,other):\n return xcomplex(complex(self) // other)\n\n def __rfloordiv__(self,other):\n return xcomplex(other // complex(self))\n\n def __pow__(self,other):\n return xcomplex(complex(self) other)\n\n def __rpow__(self,other):\n return xcomplex(other complex(self) )\n\n def __mod__(self,other):\n return xcomplex(complex(self) % other)\n\n def 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Unused import	django-oscar/django-oscar/src/oscar/apps/customer/migrations/0002_auto_20150807_1725.py	[ { "content": "# -- coding: utf-8 --\nfrom __future__ import unicode_literals\n\nfrom django.db import models, migrations\nimport oscar.models.fields.autoslugfield\nimport django.core.validators\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Migration(migrations.Migration):\n\n dependencies = [\n ('customer', '0001_initial'),\n ]\n\n operations = [\n migrations.AlterField(\n model_name='communicationeventtype',\n name='code',\n field=oscar.models.fields.autoslugfield.AutoSlugField(populate_from='name', validators=[django.core.validators.RegexValidator(regex=r'^[a-zA-Z_][0-9a-zA-Z_]*$', message=\"Code can only contain the letters a-z, A-Z, digits, and underscores, and can't start with a digit.\")], editable=False, max_length=128, separator='_', blank=True, help_text='Code used for looking up this event programmatically', unique=True, verbose_name='Code'),\n preserve_default=True,\n ),\n ]", "metadata": "root.Migration", "header": "['module', '___EOS___']", "index": 8 } ]	[ { "span": "from django.db import models, migrations", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 40 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "--", " ", "codi", "ng", ":", " ", "utf", "-", "8", " ", "--", "_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "\\u\\u", "future\\u\\u_", "import_", "unicode", "\\u", "literals_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "django_", "._", "db_", "import_", "models_", ",_", "migrations_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "osc", "ar_", "._", "models_", "._", "fields_", "._", "autos", "lug", "field_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "django_", "._", "core_", "._", "validators_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", 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Variable defined multiple times	kayhayen/Nuitka/nuitka/build/inline_copy/lib/scons-2.3.2/SCons/Environment.py	[ { "content": "def apply_tools(env, tools, toolpath):\n # Store the toolpath in the Environment.\n if toolpath is not None:\n env['toolpath'] = toolpath\n\n if not tools:\n return\n # Filter out null tools from the list.\n for tool in [_f for _f in tools if _f]:\n if SCons.Util.is_List(tool) or isinstance(tool, tuple):\n toolname = tool[0]\n toolargs = tool[1] # should be a dict of kw args\n tool = env.Tool(toolname, **toolargs)\n else:\n env.Tool(tool)", "metadata": "root.apply_tools", "header": "['module', '___EOS___']", "index": 92 } ]	[ { "span": "tool ", "start_line": 104, "start_column": 12, "end_line": 104, "end_column": 16 } ]	[ { "span": "tool ", "start_line": 100, "start_column": 8, "end_line": 100, "end_column": 12 } ]	1	true	[ "[CLS]_", "Variable_", "defined_", "multiple_", "times_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "appl", "y", "\\u", "tools_", "(_", "env_", ",_", "tools_", ",_", "tool", "path_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", " ", "Stor", "e", " ", "the", " ", "tool", "path", " ", "in", " ", "the", " ", "Environ", "ment", "._", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "tool", "path_", "is_", "not_", "None_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "env_", "[_", "'", "tool", "path", "'_", "]_", "=_", "tool", "path_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "not_", "tools_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", " ", "Filter", " ", "out", " ", "null", " ", "tool", "s", " ", "from", " ", "the", " ", "list", "._", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "for_", "tool_", "in_", "[_", "\\u", "f_", "for_", "\\u", "f_", "in_", "tools_", "if_", "\\u", "f_", "]_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "SC", "ons_", "._", "Util_", "._", "is", "\\u", "List_", "(_", "tool_", ")_", "or_", "isinstance_", "(_", "tool_", ",_", "tuple_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "tool", "name_", "=_", "tool_", "[_", "0_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "tool", "args_", "=_", "tool_", "[_", "1_", "]_", "#", " ", "shou", "ld", " ", "be", " ", "a", " ", "dict", " ", "of", " ", "kw", " ", "args_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "tool_", "=_", "env_", "._", "Tool_", "(_", "tool", "name_", ",_", "**_", "tool", "args_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "env_", "._", "Tool_", "(_", "tool_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	neuropoly/spinalcordtoolbox/dev/sct_segment_gray_matter_asman/sct_asman_old.py	[ { "content": "#!/usr/bin/env python\n########################################################################################################################\n#\n# Asman et al. groupwise multi-atlas segmentation method implementation\n#\n#\n# ----------------------------------------------------------------------------------------------------------------------\n# Copyright (c) 2014 Polytechnique Montreal <www.neuro.polymtl.ca>\n# Authors: Augustin Roux, Sara Dupont\n# Modified: 2015-03-24\n#\n# About the license: see the file LICENSE.TXT\n########################################################################################################################\n\n# TODO change 'target' by 'input'\n# TODO : make it faster\n\n# import os\n# import sys\n# import numpy as np\n# import matplotlib.pyplot as plt\n\nfrom msct_pca import PCA\n# from msct_image import Image\n# from msct_parser import \nfrom msct_gmseg_utils import \nimport sct_utils as sct\n\nfrom math import sqrt\nfrom math import exp\n# from math import fabs\n\n\n\n\n########################################################################################################################\n# ----------------------------------------------------- Classes ------------------------------------------------------ #\n########################################################################################################################\n\n# ----------------------------------------------------------------------------------------------------------------------\n# MODEL DICTIONARY -----------------------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# MODEL DICTIONARY SLICE BY SLICE---------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# MODEL ---------------------------------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# TARGET SEGMENTATION PAIRWISE -----------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# TARGET SEGMENTATION GROUPWISE ----------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# GRAY MATTER SEGMENTATION SUPERVISED METHOD ---------------------------------------------------------------------------\n\n\n########################################################################################################################\n# ------------------------------------------------------ MAIN ------------------------------------------------------- #\n########################################################################################################################\n\nif __name__ == \"__main__\":\n param = Param()\n input_target_fname = None\n if param.debug:\n print '\\n* WARNING: DEBUG MODE ON \\n'\n fname_input = param.path_dictionary + \"/errsm_34.nii.gz\"\n fname_input = param.path_dictionary + \"/errsm_34_seg_in.nii.gz\"\n else:\n param_default = Param()\n\n # Initialize the parser\n parser = Parser(__file__)\n parser.usage.set_description('Project all the input image slices on a PCA generated from set of t2star images')\n parser.add_option(name=\"-i\",\n type_value=\"file\",\n description=\"T2star image you want to project\",\n mandatory=True,\n example='t2star.nii.gz')\n parser.add_option(name=\"-dic\",\n type_value=\"folder\",\n description=\"Path to the dictionary of images\",\n mandatory=True,\n example='/home/jdoe/data/dictionary')\n parser.add_option(name=\"-model\",\n type_value=\"multiple_choice\",\n description=\"Load or compute the model\",\n mandatory=True,\n example=['load', 'compute'])\n parser.add_option(name=\"-l\",\n type_value=\"str\",\n description=\"Image containing level labels for the target or str indicating the level\",\n mandatory=False,\n\n example='MNI-Poly-AMU_level_IRP.nii.gz')\n parser.add_option(name=\"-reg\",\n type_value=[[','], 'str'],\n description=\"list of transformations to apply to co-register the dictionary data\",\n mandatory=False,\n default_value=['Affine'],\n example=['SyN'])\n parser.add_option(name=\"-target-reg\",\n type_value='multiple_choice',\n description=\"type of registration of the target to the model space \"\n \"(if pairwise, the registration applied to the target are the same as\"\n \" those of the -reg flag)\",\n mandatory=False,\n default_value='pairwise',\n example=['pairwise', 'groupwise'])\n parser.add_option(name=\"-seg-type\",\n type_value='multiple_choice',\n description=\"type of segmentation (gray matter or white matter)\",\n mandatory=False,\n default_value='wm',\n example=['wm', 'gm', 'gm-model'])\n parser.add_option(name=\"-v\",\n type_value=\"int\",\n description=\"verbose: 0 = nothing, 1 = classic, 2 = expended\",\n mandatory=False,\n default_value=0,\n example='1')\n\n arguments = parser.parse(sys.argv[1:])\n input_target_fname = arguments[\"-i\"]\n param.path_dictionary = arguments[\"-dic\"]\n param.todo_model = arguments[\"-model\"]\n\n if \"-reg\" in arguments:\n param.reg = arguments[\"-reg\"]\n if \"-target-reg\" in arguments:\n param.target_reg = arguments[\"-target-reg\"]\n if \"-seg-type\" in arguments:\n param.seg_type = arguments[\"-seg-type\"]\n if \"-l\" in arguments:\n param.level_fname = arguments[\"-l\"]\n if \"-v\" in arguments:\n param.verbose = arguments[\"-v\"]\n\n gm_seg_method = GMsegSupervisedMethod(input_target_fname, gm_seg_param=param)\n\n if param.verbose == 2:\n gm_seg_method.show()", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Param:", "metadata": "root.Param", "header": "['module', '___EOS___']", "index": 33 }, { "content": " def __init__(self):\n self.debug = 0\n self.path_dictionary = None # '/Volumes/folder_shared/greymattersegmentation/data_asman/dictionary'\n self.todo_model = None # 'compute'\n self.reg = None # TODO : REMOVE THAT PARAM WHEN REGISTRATION IS OPTIMIZED\n self.target_reg = None # TODO : REMOVE THAT PARAM WHEN GROUPWISE/PAIR IS OPTIMIZED\n self.level_fname = None\n self.seg_type = None\n self.verbose = 1", "metadata": "root.Param.__init__", "header": "['class', 'Param', ':', '___EOS___']", "index": 34 }, { "content": "class ModelDictionary:\n \"\"\"\n Dictionary used by the supervised gray matter segmentation method\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n # FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n def nb_w_pixels(self):\n s_w_pix = 0\n for slice in self.slices:\n s_w_pix += np.sum(slice.seg)\n return s_w_pix/self.J\n '''\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def compute_majority_vote_mean_seg_old_version(self, seg_data_set):\n \"\"\"\n Compute the mean segmentation image for a given segmentation data set seg_data_set by Majority Vote\n\n :param seg_data_set:\n :return:\n \"\"\"\n mean_seg = []\n # dictionary containing for each possible label value :\n # the sum of all the flatten segmentation in seg_data_set = vector of the sum for each pixel\n choose_maj_vote = {}\n # for 0 and for 1 :\n for l in self.L:\n to_be_summed = []\n for dic_slice in seg_data_set:\n # vector of the pixel corresponding to the label value l in this slice\n # 0 if the pixel is different than the label value, 1 if it's the same\n consistent_vox = []\n for row in dic_slice:\n for i in row:\n try:\n if i > 0.2:\n i = 1\n except ValueError:\n print 'Value Error with i = ', i\n print 'Dataset was : \\n', seg_data_set\n consistent_vox.append(kronecker_delta(i, l))\n to_be_summed.append(consistent_vox)\n summed_vector = np.zeros(len(to_be_summed[0]), dtype=np.int)\n # adding all the vectors of consistent_vox\n for v in to_be_summed:\n summed_vector = np.add(summed_vector, v)\n choose_maj_vote[l] = summed_vector\n\n # for each pixel :\n # the value chosen for mean_seg is the value that was the most present in the data set for this pixel\n for vote_tuple in zip(choose_maj_vote[0], choose_maj_vote[1]):\n if vote_tuple[0] >= vote_tuple[1]:\n mean_seg.append(0)\n elif vote_tuple[1] > vote_tuple[0]:\n mean_seg.append(1)\n n = int(sqrt(self.N))\n return np.asarray(mean_seg).reshape(n, n)\n '''\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n def crop_data_new_ellipse(self):\n #croping the im_M images\n\n #mean_seg dimensions :\n #height\n down = True\n above = False\n height_min = 0\n height_max = 0\n for h,row in enumerate(self.mean_seg.T):\n if sum(row) == 0:\n if down :\n height_min = h\n elif not above:\n height_max = h\n above = True\n else:\n down = False\n height_min += 1\n height_max -= 1\n\n #width\n left = True\n right = False\n width_min = 0\n width_max = 0\n for w,row in enumerate(self.mean_seg):\n if sum(row) == 0:\n if left :\n width_min = w\n elif not right:\n width_max = w\n right = True\n else:\n left = False\n width_min += 1\n width_max -= 1\n\n a = (width_max - width_min)/2.0\n b = (height_max - height_min)/2.0\n\n range_x = np.asarray(range(int(-10a),int(10a)+1)) /10.0\n top_points = [(b sqrt(1-(x2/a2)),x) for x in range_x]\n n = int(sqrt(self.N))\n\n top_points.sort()\n\n ellipse_mask = np.zeros((n,n))\n done_rows = []\n for point in top_points:\n y_plus = int(round((n/2)+point[0]))\n y_minus = int(round((n/2)-point[0]))\n print 'y_plus', y_plus, 'y_minus', y_minus\n if y_plus not in done_rows:\n x_plus = int(round((n/2)+abs(point[1])))\n x_minus = int(round((n/2)-abs(point[1])))\n for x in range(x_minus, x_plus+1):\n ellipse_mask[x, y_plus] = 1\n ellipse_mask[x, y_minus] = 1\n done_rows.append(y_plus)\n\n\n print 'axis', a, b\n print 'done_rows', done_rows\n print 'center : ', int(n/2)\n print ellipse_mask\n save_image(ellipse_mask, 'ellipse_mask', path=self.model_dic_name+'/', type='uint8')\n '''\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def crop_data(self):\n \"\"\"\n Crop the model images (im_M) to an ellipse shape to get rid of the size/shape variability between slices\n \"\"\"\n im_mean_seg = Image(param=self.mean_seg)\n\n nz_coord = im_mean_seg.getNonZeroCoordinates()\n nz_coord_dic = {}\n for coord in nz_coord:\n nz_coord_dic[coord.x] = []\n for coord in nz_coord:\n nz_coord_dic[coord.x].append(coord.y)\n\n ellipse_mask = im_mean_seg.copy().data\n\n for x, y_list in nz_coord_dic.items():\n full_y_list = range(min(y_list), max(y_list)+1)\n if y_list != full_y_list:\n for y in full_y_list:\n ellipse_mask[x, y] = 1\n\n save_image(ellipse_mask, 'ellipse_mask', path=self.model_dic_name+'/', im_type='uint8')\n\n for dic_slice in self.slices:\n new_im_m = np.einsum('ij,ij->ij', ellipse_mask, dic_slice.im_M)\n dic_slice.set(im_m=new_im_m)\n '''\n # ------------------------------------------------------------------------------------------------------------------\n # END OF FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n # TODO: ADAPT LOAD DIC TO GM_SEG AND WM_SEG ATTRIBUTES FOR THE SLICES\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------", "metadata": "root.ModelDictionary", "header": "['module', '___EOS___']", "index": 51 }, { "content": " def __init__(self, dic_param=None):\n \"\"\"\n model dictionary constructor\n\n :param dic_param: dictionary parameters, type: Param\n \"\"\"\n if dic_param is None:\n self.param = Param()\n else:\n self.param = dic_param\n\n # list of the slices of the dictionary\n self.slices = [] # type: list of slices\n # number of slices\n self.J = 0 # type: int\n # dimension of the slices (flattened)\n self.N = 0 # type: int\n # mean segmentation image of the dictionary\n self.mean_seg = None # type: numpy array\n # mean image of the dictionary\n self.mean_image = None # type: numpy array\n\n # dictionary containing information about the data dictionary slices by subject : used to save the model only\n # self.dic_data_info[subject] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': []}\n self.dic_data_info = {} # type: dictionary\n\n # list of transformation to apply to each slice to co-register the data into the common groupwise space\n if self.param.reg is not None:\n self.coregistration_transfos = self.param.reg\n else:\n self.coregistration_transfos = ['Affine']\n\n suffix = ''\n for transfo in self.coregistration_transfos:\n suffix += '_' + transfo\n # self.coregistration_transfos = ['SyN']\n\n # folder containing the saved model\n self.model_dic_name = ''\n if self.param.todo_model == 'compute':\n self.model_dic_name = './gmseg_model_dictionary' + suffix # TODO: remove suffix\n self.compute_model_dictionary()\n elif self.param.todo_model == 'load':\n self.model_dic_name = self.param.path_dictionary # TODO change the path by the name of the dic ?? ...\n self.load_model_dictionary()\n else:\n sct.printv('WARNING: no todo_model param', self.param.verbose, 'warning')\n\n # save all the dictionary slices\n # TODO: --> not used by the model, only for visualization\n\n '''\n if 'data_by_slice' not in os.listdir('.'):\n sct.run('mkdir ./data_by_slice')\n os.chdir('./data_by_slice')\n for j in range(self.J):\n save_image(self.slices[j].im, 'slice_'+str(j) + '_im')\n save_image(self.slices[j].im_M, 'slice_'+str(j) + '_registered_im')\n\n save_image(self.slices[j].seg, 'slice_'+str(j) + '_seg')\n save_image(self.slices[j].seg_M, 'slice_'+str(j) + '_registered_seg')\n os.chdir('..')\n '''\n\n '''\n if self.param.verbose == 2:\n self.show_data()\n '''", "metadata": "root.ModelDictionary.__init__", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 55 }, { "content": " def compute_model_dictionary(self):\n \"\"\"\n Compute the model dictionary using the provided data set\n \"\"\"\n sct.printv('\\nComputing the model dictionary ...', self.param.verbose, 'normal')\n # Load all the images' slices from param.path_dictionary\n sct.printv('\\nLoading data dictionary ...', self.param.verbose, 'normal')\n # List of T2star images (im) and their label decision (seg) (=segmentation of the gray matter), slice by slice\n\n sct.run('mkdir ' + self.model_dic_name)\n\n self.slices = self.load_data_dictionary()\n\n # number of slices in the data set\n self.J = len([dic_slice.im for dic_slice in self.slices])\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im.flatten())\n\n self.save_model_data('im')\n\n if self.param.seg_type != 'gm-model':\n # inverts the segmentation slices : the model uses segmentation of the WM instead of segmentation of the GM\n self.invert_seg()\n self.save_model_data('inverted_gm_seg')\n\n sct.printv('\\nComputing the transformation to co-register all the data into a common groupwise space ...',\n self.param.verbose, 'normal')\n\n self.mean_seg = self.seg_coregistration(transfo_to_apply=self.coregistration_transfos)\n self.save_model_data('seg_M')\n\n sct.printv('\\nCo-registering all the data into the common groupwise space ...', self.param.verbose, 'normal')\n\n # List of images (im_M) and their label decision (seg_M) (=segmentation of the gray matter),\n # --> slice by slice in the common groupwise space\n self.coregister_data(transfo_to_apply=self.coregistration_transfos)\n\n '''\n TESTING\n\n self.crop_data()\n '''\n\n self.save_model_data('im_M')\n\n self.mean_image = self.compute_mean_dic_image(np.asarray([dic_slice.im_M for dic_slice in self.slices]))\n save_image(self.mean_image, 'mean_image', path=self.model_dic_name+'/', im_type='uint8')", "metadata": "root.ModelDictionary.compute_model_dictionary", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 125 }, { "content": " def load_data_dictionary(self):\n \"\"\"\n each slice of each subject will be loaded separately in a Slice object containing :\n\n - a slice id\n\n - the original T2star image crop around the spinal cord: im\n\n - a manual segmentation of the gray matter: seg\n\n :return slices: numpy array of all the slices of the data dictionary\n \"\"\"\n # initialization\n slices = []\n j = 0\n # TODO: change the name of files to find to a more general structure\n for subject_dir in os.listdir(self.param.path_dictionary):\n subject_path = self.param.path_dictionary + '/' + subject_dir\n if os.path.isdir(subject_path):\n self.dic_data_info[subject_dir] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': []}\n\n subject_seg_in = ''\n subject_gm_seg = ''\n sct.run('mkdir ' + self.model_dic_name + '/' + subject_dir, verbose=self.param.verbose)\n for file_name in os.listdir(subject_path):\n if 'GM' in file_name or 'gmseg' in file_name:\n subject_gm_seg = file_name\n '''\n # copy of the seg image in the saved model folder\n sct.run('cp ./' + self.param.path_dictionary + subject_dir + '/' + file_name\n + ' ' + self.model_dic_name + '/' + subject_dir + '/' + subject_dir + '_seg.nii.gz')\n '''\n if 'seg_in' in file_name and 'gm' not in file_name.lower():\n subject_seg_in = file_name\n '''\n # copy of the slice image in the saved model folder\n sct.run('cp ./' + self.param.path_dictionary + subject_dir + '/' + file_name\n + ' ' + self.model_dic_name + '/' + subject_dir + '/' + subject_dir + '_im.nii.gz')\n '''\n\n im = Image(subject_path + '/' + subject_seg_in)\n seg = Image(subject_path + '/' + subject_gm_seg)\n\n for im_slice, seg_slice in zip(im.data, seg.data):\n self.dic_data_info[subject_dir]['n_slices'] += 1\n slices.append(Slice(slice_id=j, im=im_slice, gm_seg=seg_slice, reg_to_m=[]))\n j += 1\n\n return np.asarray(slices)", "metadata": "root.ModelDictionary.load_data_dictionary", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 178 }, { "content": " def save_model_data(self, what_to_save):\n \"\"\"\n save 3D images of the model dictionary using the dictionary of information about the data slices by subject\n\n :param what_to_save: type of data to be saved\n \"\"\"\n suffix = ''\n data_to_save = []\n total_n_slices = 0\n if what_to_save == 'gm_seg':\n suffix = '_gm_seg'\n data_to_save = [dic_slice.gm_seg for dic_slice in self.slices]\n if what_to_save == 'inverted_gm_seg':\n suffix = '_wm_seg'\n data_to_save = [dic_slice.wm_seg for dic_slice in self.slices]\n elif what_to_save == 'im':\n suffix = '_im'\n data_to_save = [dic_slice.im for dic_slice in self.slices]\n elif what_to_save == 'im_M':\n suffix = '_im_model_space'\n data_to_save = [dic_slice.im_M for dic_slice in self.slices]\n elif what_to_save == 'gm_seg_M':\n suffix = '_gm_seg_model_space'\n data_to_save = [dic_slice.gm_seg_M for dic_slice in self.slices]\n elif what_to_save == 'wm_seg_M':\n suffix = '_wm_seg_model_space'\n data_to_save = [dic_slice.wm_seg_M for dic_slice in self.slices]\n\n for subject_name in sorted(self.dic_data_info.keys()):\n first_subject_slice = total_n_slices\n last_subject_slice = first_subject_slice + self.dic_data_info[subject_name]['n_slices']\n self.dic_data_info[subject_name][what_to_save] = data_to_save[first_subject_slice:last_subject_slice]\n total_n_slices += self.dic_data_info[subject_name]['n_slices']\n\n for subject_name, info in zip(self.dic_data_info.keys(), self.dic_data_info.values()):\n for i, slice_i in enumerate(info[what_to_save]):\n\n to_save = Image(param=np.asarray(slice_i))\n to_save.path = self.model_dic_name + '/' + subject_name + '/'\n\n to_save.file_name = subject_name + '_slice' + str(i) + suffix\n to_save.ext = '.nii.gz'\n to_save.save(type='minimize')", "metadata": "root.ModelDictionary.save_model_data", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 229 }, { "content": " def invert_seg(self):\n \"\"\"\n Invert the gray matter segmentation to get segmentation of the white matter instead\n keeps more information, theoretically better results\n \"\"\"\n for dic_slice in self.slices:\n im_dic = Image(param=dic_slice.im)\n sc = im_dic.copy()\n nz_coord_sc = sc.getNonZeroCoordinates()\n im_seg = Image(param=dic_slice.gm_seg)\n nz_coord_d = im_seg.getNonZeroCoordinates()\n for coord in nz_coord_sc:\n sc.data[coord.x, coord.y] = 1\n for coord in nz_coord_d:\n im_seg.data[coord.x, coord.y] = 1\n # cast of the -1 values (-> GM pixel at the exterior of the SC pixels) to +1 --> WM pixel\n inverted_slice_seg = np.absolute(sc.data - im_seg.data).astype(int)\n dic_slice.set(wm_seg=inverted_slice_seg)", "metadata": "root.ModelDictionary.invert_seg", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 274 }, { "content": " def seg_coregistration(self, transfo_to_apply=None):\n \"\"\"\n For all the segmentation slices, do a registration of the segmentation slice to the mean segmentation\n applying all the transformations in transfo_to_apply\n\n Compute, apply and save each transformation warping field for all the segmentation slices\n\n Compute the new mean segmentation at each step and update self.mean_seg\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n if self.param.seg_type == 'gm-model':\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.gm_seg for dic_slice in self.slices]))\n else:\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.wm_seg for dic_slice in self.slices]))\n\n for transfo in transfo_to_apply:\n sct.printv('Doing a ' + transfo + ' registration of each segmentation slice to the mean segmentation ...', self.param.verbose, 'normal')\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type=transfo)\n\n '''\n fig=plt.figure()\n plt.imshow(current_mean_seg)\n plt.title('Current mean segmentation ...')\n plt.plot()\n\n fig=plt.figure()\n plt.imshow(self.slices[0].seg_M)\n plt.title('slice 0...')\n plt.plot()\n\n # mean number of white pixels in the manual segmentation slices of the dictionary\n mean_white_pix = self.nb_w_pixels()\n print mean_white_pix\n\n\n i=1\n while np.sum(current_mean_seg) < 0.8mean_white_pix:\n print '--> Affine registration number ',i\n print 'number of white pixels in the current mean seg', np.sum(current_mean_seg)\n current_mean_seg = self.compute_mean_seg(np.asarray([slice.seg_M for slice in self.slices]))\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type='Affine')\n i+=10\n #current_mean_seg = self.compute_mean_seg(np.asarray([slice.seg_M for slice in self.slices]))\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type='Affine')\n '''\n resulting_mean_seg = current_mean_seg\n\n return resulting_mean_seg", "metadata": "root.ModelDictionary.seg_coregistration", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 294 }, { "content": " def find_coregistration(self, mean_seg=None, transfo_type='Rigid', first=True):\n \"\"\"\n For each segmentation slice, apply and save a registration of the specified type of transformation\n the name of the registration file (usually a matlab matrix) is saved in self.RtoM\n\n :param mean_seg: current mean segmentation\n\n :param transfo_type: type of transformation for the registration\n\n :return mean seg: updated mean segmentation\n \"\"\"\n for dic_slice in self.slices:\n name_j_transform = 'transform_slice_' + str(dic_slice.id) + find_ants_transfo_name(transfo_type)[0]\n new_reg_list = dic_slice.reg_to_M.append(name_j_transform)\n dic_slice.set(reg_to_m=new_reg_list)\n if first:\n if self.param.seg_type == 'gm-model':\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n if self.param.seg_type == 'gm-model':\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n if self.param.seg_type == 'gm-model':\n dic_slice.set(gm_seg_m=seg_m.astype(int))\n dic_slice.set(gm_seg_m_flat=seg_m.flatten().astype(int))\n else:\n dic_slice.set(wm_seg_m=seg_m.astype(int))\n dic_slice.set(wm_seg_m_flat=seg_m.flatten().astype(int))\n\n if self.param.seg_type == 'gm-model':\n mean_seg = compute_majority_vote_mean_seg([dic_slice.gm_seg_M for dic_slice in self.slices])\n else:\n mean_seg = compute_majority_vote_mean_seg([dic_slice.wm_seg_M for dic_slice in self.slices])\n\n save_image(mean_seg, 'mean_seg', path=self.model_dic_name+'/', im_type='uint8')\n\n return mean_seg", "metadata": "root.ModelDictionary.find_coregistration", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 354 }, { "content": " def compute_mean_dic_image(self, im_data_set):\n \"\"\"\n Compute the mean image of the dictionary\n\n Used to co-register the dictionary images into teh common groupwise space\n\n :param im_data_set:\n :return mean: mean image of the input data set\n \"\"\"\n mean = np.sum(im_data_set, axis=0)\n\n mean /= float(self.J)\n\n return mean", "metadata": "root.ModelDictionary.compute_mean_dic_image", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 443 }, { "content": " def coregister_data(self, transfo_to_apply=None):\n \"\"\"\n Apply to each image slice of the dictionary the transformations found registering the segmentation slices.\n The co_registered images are saved for each slice as im_M\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n list_im = [dic_slice.im for dic_slice in self.slices]\n list_gm_seg = [dic_slice.gm_seg for dic_slice in self.slices]\n \n for dic_slice in self.slices:\n for n_transfo, transfo in enumerate(transfo_to_apply):\n im_m = apply_ants_transfo(self.compute_mean_dic_image(list_im), dic_slice.im, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n # apply_2D_rigid_transformation(self.im[j], self.RM[j]['tx'], self.RM[j]['ty'], self.RM[j]['theta'])\n if self.param.seg_type == 'gm':\n gm_seg_m = apply_ants_transfo(self.compute_mean_dic_image(list_gm_seg), dic_slice.gm_seg, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n\n dic_slice.set(im_m=im_m)\n dic_slice.set(im_m_flat=im_m.flatten())\n if self.param.seg_type == 'gm':\n dic_slice.set(gm_seg_m=gm_seg_m)\n dic_slice.set(gm_seg_m_flat=gm_seg_m.flatten())", "metadata": "root.ModelDictionary.coregister_data", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 459 }, { "content": " def load_model_dictionary(self):\n \"\"\"\n Load the model dictionary from a saved one\n \"\"\"\n import itertools\n\n sct.printv('\\nLoading the model dictionary ...', self.param.verbose, 'normal')\n\n j = 0\n for subject_dir in os.listdir(self.model_dic_name):\n subject_path = self.model_dic_name + subject_dir\n if os.path.isdir(subject_path) and 'transformations' not in subject_path:\n subject_im = None\n im_mat = None\n subject_seg = None\n seg_mat = None\n subject_im_m = None\n im_m = None\n subject_seg_m = None\n seg_m = None\n\n for file_name in os.listdir(subject_path):\n if '_im.nii' in file_name:\n subject_im = file_name\n if '_seg.nii' in file_name:\n subject_seg = file_name\n if '_im_model_space.nii' in file_name:\n subject_im_m = file_name\n if '_seg_model_space.nii' in file_name:\n subject_seg_m = file_name\n if subject_im is not None:\n im = Image(subject_path + '/' + subject_im)\n im_mat = im.data\n if subject_seg is not None:\n seg = Image(subject_path + '/' + subject_seg)\n seg_mat = seg.data\n if subject_im_m is not None:\n im_m = Image(subject_path + '/' + subject_im_m)\n else:\n sct.printv('WARNING: no dictionary image in model space for ' + subject_dir,\n self.param.verbose, 'warning')\n if subject_seg_m is not None:\n seg_m = Image(subject_path + '/' + subject_seg_m)\n else:\n sct.printv('WARNING: no segmentation in model space for ' + subject_dir,\n self.param.verbose, 'warning')\n if im_mat is None:\n im_mat = itertools.repeat(None, im_m.data.shape[0])\n if seg_mat is None:\n seg_mat = itertools.repeat(None, im_m.data.shape[0])\n\n for im_slice, seg_slice, im_m_slice, seg_m_slice in zip(im_mat, seg_mat, im_m.data, seg_m.data):\n reg_list = ['transform_slice_' + str(j) + find_ants_transfo_name(transfo_type)[0]\n for transfo_type in self.coregistration_transfos]\n self.slices.append(Slice(slice_id=j, im=im_slice, seg=seg_slice, im_m=im_m_slice, seg_m=seg_m_slice,\n im_m_flat=im_m_slice.flatten(), seg_m_flat=seg_m_slice.flatten(),\n reg_to_m=reg_list))\n j += 1\n\n # number of atlases in the dictionary\n self.J = len(self.slices) # len([slice.im for slice in self.slices])\n\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im_M.flatten())\n\n self.mean_image = Image(self.model_dic_name + 'mean_image.nii.gz').data\n self.mean_seg = Image(self.model_dic_name + 'mean_seg.nii.gz').data", "metadata": "root.ModelDictionary.load_model_dictionary", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 587 }, { "content": " def show_data(self):\n \"\"\"\n show the 10 first slices of the model dictionary\n \"\"\"\n for dic_slice in self.slices[:10]:\n fig = plt.figure()\n\n seg_subplot = fig.add_subplot(2, 3, 1)\n seg_subplot.set_title('Original space - seg')\n im_seg = seg_subplot.imshow(dic_slice.wm_seg)\n im_seg.set_interpolation('nearest')\n im_seg.set_cmap('gray')\n\n seg_m_subplot = fig.add_subplot(2, 3, 2)\n seg_m_subplot.set_title('Common groupwise space - seg')\n im_seg_m = seg_m_subplot.imshow(dic_slice.wm_seg_M)\n im_seg_m.set_interpolation('nearest')\n im_seg_m.set_cmap('gray')\n\n mean_seg_subplot = fig.add_subplot(2, 3, 3)\n mean_seg_subplot.set_title('Mean seg')\n im_mean_seg = mean_seg_subplot.imshow(np.asarray(self.mean_seg))\n im_mean_seg.set_interpolation('nearest')\n im_mean_seg.set_cmap('gray')\n\n slice_im_subplot = fig.add_subplot(2, 3, 4)\n slice_im_subplot.set_title('Original space - data ')\n im_slice_im = slice_im_subplot.imshow(dic_slice.im)\n im_slice_im.set_interpolation('nearest')\n im_slice_im.set_cmap('gray')\n\n slice_im_m_subplot = fig.add_subplot(2, 3, 5)\n slice_im_m_subplot.set_title('Common groupwise space - data ')\n im_slice_im_m = slice_im_m_subplot.imshow(dic_slice.im_M)\n im_slice_im_m.set_interpolation('nearest')\n im_slice_im_m.set_cmap('gray')\n\n plt.suptitle('Slice ' + str(dic_slice.id))\n plt.show()", "metadata": "root.ModelDictionary.show_data", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 656 }, { "content": "class ModelDictionaryBySlice:\n \"\"\"\n Dictionary used by the supervised gray matter segmentation method\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n # FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n # END OF FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n # TODO: ADAPT LOAD MODEL TO GMSEG AND WMSEG ATTRIBUTES OF SLCIES\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------", "metadata": "root.ModelDictionaryBySlice", "header": "['module', '___EOS___']", "index": 699 }, { "content": " def __init__(self, dic_param=None):\n \"\"\"\n model dictionary constructor\n\n :param dic_param: dictionary parameters, type: Param\n \"\"\"\n if dic_param is None:\n self.param = Param()\n else:\n self.param = dic_param\n\n self.level_label = {0: '', 1: 'C1', 2: 'C2', 3: 'C3', 4: 'C4', 5: 'C5', 6: 'C6', 7: 'C7', 8: 'T1', 9: 'T2',\n 10: 'T3', 11: 'T4', 12: 'T5', 13: 'T6'}\n\n # list of the slices of the dictionary\n self.slices = [] # type: list of slices\n # number of slices\n self.J = 0 # type: int\n # dimension of the slices (flattened)\n self.N = 0 # type: int\n # mean segmentation image of the dictionary\n self.mean_seg = None # type: numpy array\n # mean image of the dictionary\n self.mean_image = None # type: numpy array\n\n # dictionary containing information about the data dictionary slices by subject : used to save the model only\n # self.dic_data_info[subject] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': []}\n self.dic_data_info = {} # type: dictionary\n\n # list of transformation to apply to each slice to co-register the data into the common groupwise space\n if self.param.reg is not None:\n self.coregistration_transfos = self.param.reg\n else:\n self.coregistration_transfos = ['Affine']\n\n suffix = ''\n for transfo in self.coregistration_transfos:\n suffix += '_' + transfo\n suffix += '_' + self.param.seg_type[0:2]\n # self.coregistration_transfos = ['SyN']\n\n # folder containing the saved model\n self.model_dic_name = ''\n if self.param.todo_model == 'compute':\n self.model_dic_name = './gmseg_model_dictionary' + suffix # TODO: remove suffix when reg is optimized\n self.compute_model_dictionary()\n elif self.param.todo_model == 'load':\n self.model_dic_name = self.param.path_dictionary # TODO change the path by the name of the dic ?? ...\n self.load_model_dictionary()\n else:\n sct.printv('WARNING: no todo_model param', self.param.verbose, 'warning')", "metadata": "root.ModelDictionaryBySlice.__init__", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 703 }, { "content": " def compute_model_dictionary(self):\n \"\"\"\n Compute the model dictionary using the provided data set\n \"\"\"\n sct.printv('\\nComputing the model dictionary ...', self.param.verbose, 'normal')\n # Load all the images' slices from param.path_dictionary\n sct.printv('\\nLoading data dictionary ...', self.param.verbose, 'normal')\n # List of T2star images (im) and their label decision (seg) (=segmentation of the gray matter), slice by slice\n\n sct.run('mkdir ' + self.model_dic_name)\n\n self.slices = self.load_data_dictionary()\n\n # number of slices in the data set\n self.J = len([dic_slice.im for dic_slice in self.slices])\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im.flatten())\n\n if self.param.seg_type != 'gm-model':\n # inverts the segmentation slices : the model uses segmentation of the WM instead of segmentation of the GM\n self.invert_seg()\n self.save_model_data('inverted_gm_seg')\n\n sct.printv('\\nComputing the transformation to co-register all the data into a common groupwise space ...',\n self.param.verbose, 'normal')\n\n self.mean_seg = self.seg_coregistration(transfo_to_apply=self.coregistration_transfos)\n if self.param.seg_type == 'gm-model':\n self.save_model_data('gm_seg_M')\n else:\n self.save_model_data('wm_seg_M')\n\n\n sct.printv('\\nCo-registering all the data into the common groupwise space ...', self.param.verbose, 'normal')\n\n # List of images (im_M) and their label decision (seg_M) (=segmentation of the gray matter),\n # --> slice by slice in the common groupwise space\n self.coregister_data(transfo_to_apply=self.coregistration_transfos)\n\n self.save_model_data('im_M')\n\n self.mean_image = self.compute_mean_dic_image(np.asarray([dic_slice.im_M for dic_slice in self.slices]))\n save_image(self.mean_image, 'mean_image', path=self.model_dic_name+'/', im_type='uint8')", "metadata": "root.ModelDictionaryBySlice.compute_model_dictionary", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 756 }, { "content": " def load_data_dictionary(self):\n \"\"\"\n each slice of each subject will be loaded separately in a Slice object containing :\n\n - a slice id\n\n - the original T2star image crop around the spinal cord: im\n\n - a manual segmentation of the gray matter: seg\n\n :return slices: numpy array of all the slices of the data dictionary\n \"\"\"\n # initialization\n slices = []\n total_j_im = 0\n total_j_seg = 0\n # TODO: change the name of files to find to a more general structure\n for subject_dir in os.listdir(self.param.path_dictionary):\n subject_path = self.param.path_dictionary + '/' + subject_dir\n if os.path.isdir(subject_path):\n self.dic_data_info[subject_dir] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': [], 'levels': []}\n j_im = 0\n j_seg = 0\n first_slice = total_j_im\n sct.run('mkdir ' + self.model_dic_name + '/' + subject_dir, verbose=self.param.verbose)\n for file_name in os.listdir(subject_path):\n if 'im' in file_name:\n slice_level = 0\n name_list = file_name.split('_')\n for word in name_list:\n if word in self.level_label.values():\n slice_level = get_key_from_val(self.level_label, word)\n\n slices.append(Slice(slice_id=total_j_im, im=Image(subject_path + '/' + file_name).data, level=slice_level, reg_to_m=[]))\n self.dic_data_info[subject_dir]['levels'].append(slice_level)\n\n # copy of the slice image in the saved model folder\n if j_im < 10:\n j_im_str = str(j_im)\n j_im_str = '0' + j_im_str\n else:\n j_im_str = str(j_im)\n\n im_file_name = subject_dir + '_slice' + j_im_str + '_' + self.level_label[slice_level] + '_im.nii.gz'\n sct.run('cp ./' + self.param.path_dictionary + '/' + subject_dir + '/' + file_name + ' ' + self.model_dic_name + '/' + subject_dir + '/' + im_file_name)\n j_im += 1\n total_j_im += 1\n\n if 'seg' in file_name:\n slices[total_j_seg].set(gm_seg=Image(subject_path + '/' + file_name).data)\n j_seg += 1\n total_j_seg += 1\n\n if j_im == j_seg:\n self.dic_data_info[subject_dir]['n_slices'] = (first_slice, total_j_im)\n else:\n sct.printv('ERROR: subject ' + subject_dir + ' doesn\\'t have the same number of slice images and segmentations', verbose=self.param.verbose, type='error')\n\n return np.asarray(slices)", "metadata": "root.ModelDictionaryBySlice.load_data_dictionary", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 805 }, { "content": " def save_model_data(self, what_to_save):\n \"\"\"\n save 3D images of the model dictionary using the dictionary of information about the data slices by subject\n\n :param what_to_save: type of data to be saved\n \"\"\"\n suffix = ''\n data_to_save = []\n if what_to_save == 'gm_seg':\n suffix = '_gm_seg'\n data_to_save = [dic_slice.gm_seg for dic_slice in self.slices]\n if what_to_save == 'inverted_gm_seg':\n suffix = '_wm_seg'\n data_to_save = [dic_slice.wm_seg for dic_slice in self.slices]\n elif what_to_save == 'im':\n suffix = '_im'\n data_to_save = [dic_slice.im for dic_slice in self.slices]\n elif what_to_save == 'im_M':\n suffix = '_im_model_space'\n data_to_save = [dic_slice.im_M for dic_slice in self.slices]\n elif what_to_save == 'gm_seg_M':\n suffix = '_gm_seg_model_space'\n data_to_save = [dic_slice.gm_seg_M for dic_slice in self.slices]\n elif what_to_save == 'wm_seg_M':\n suffix = '_wm_seg_model_space'\n data_to_save = [dic_slice.wm_seg_M for dic_slice in self.slices]\n\n for subject_name in sorted(self.dic_data_info.keys()):\n first_subject_slice, last_subject_slice = self.dic_data_info[subject_name]['n_slices']\n self.dic_data_info[subject_name][what_to_save] = data_to_save[first_subject_slice:last_subject_slice]\n\n for i, slice_i in enumerate(self.dic_data_info[subject_name][what_to_save]):\n to_save = Image(param=np.asarray(slice_i))\n to_save.path = self.model_dic_name + '/' + subject_name + '/'\n\n if i < 10:\n i_str = str(i)\n i_str = '0' + i_str\n else:\n i_str = str(i)\n to_save.file_name = subject_name + '_slice' + i_str + '_' + self.level_label[self.dic_data_info[subject_name]['levels'][i]] + suffix\n to_save.ext = '.nii.gz'\n to_save.save(type='minimize')", "metadata": "root.ModelDictionaryBySlice.save_model_data", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 866 }, { "content": " def invert_seg(self):\n \"\"\"\n Invert the gray matter segmentation to get segmentation of the white matter instead\n keeps more information, theoretically better results\n \"\"\"\n for dic_slice in self.slices:\n im_dic = Image(param=dic_slice.im)\n sc = im_dic.copy()\n nz_coord_sc = sc.getNonZeroCoordinates()\n im_seg = Image(param=dic_slice.gm_seg)\n nz_coord_d = im_seg.getNonZeroCoordinates()\n for coord in nz_coord_sc:\n sc.data[coord.x, coord.y] = 1\n for coord in nz_coord_d:\n im_seg.data[coord.x, coord.y] = 1\n # cast of the -1 values (-> GM pixel at the exterior of the SC pixels) to +1 --> WM pixel\n inverted_slice_decision = np.absolute(sc.data - im_seg.data).astype(int)\n dic_slice.set(wm_seg=inverted_slice_decision)", "metadata": "root.ModelDictionaryBySlice.invert_seg", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 911 }, { "content": " def seg_coregistration(self, transfo_to_apply=None):\n \"\"\"\n For all the segmentation slices, do a registration of the segmentation slice to the mean segmentation\n applying all the transformations in transfo_to_apply\n\n Compute, apply and save each transformation warping field for all the segmentation slices\n\n Compute the new mean segmentation at each step and update self.mean_seg\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n if self.param.seg_type == 'gm-model':\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.gm_seg for dic_slice in self.slices]))\n else:\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.wm_seg for dic_slice in self.slices]))\n\n for transfo in transfo_to_apply:\n sct.printv('Doing a ' + transfo + ' registration of each segmentation slice to the mean segmentation ...', self.param.verbose, 'normal')\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type=transfo)\n\n resulting_mean_seg = current_mean_seg\n\n return resulting_mean_seg", "metadata": "root.ModelDictionaryBySlice.seg_coregistration", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 931 }, { "content": " def find_coregistration(self, mean_seg=None, transfo_type='Rigid', first=True):\n \"\"\"\n For each segmentation slice, apply and save a registration of the specified type of transformation\n the name of the registration file (usually a matlab matrix) is saved in self.RtoM\n\n :param mean_seg: current mean segmentation\n\n :param transfo_type: type of transformation for the registration\n\n :return mean seg: updated mean segmentation\n \"\"\"\n\n if self.param.seg_type == 'gm-model':\n # Coregistraion of the gray matter segmentations\n for dic_slice in self.slices:\n name_j_transform = 'transform_slice_' + str(dic_slice.id) + find_ants_transfo_name(transfo_type)[0]\n new_reg_list = dic_slice.reg_to_M.append(name_j_transform)\n dic_slice.set(reg_to_m=new_reg_list)\n\n if first:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n\n dic_slice.set(gm_seg_m=seg_m.astype(int))\n dic_slice.set(gm_seg_m_flat=seg_m.flatten().astype(int))\n\n mean_seg = compute_majority_vote_mean_seg([dic_slice.gm_seg_M for dic_slice in self.slices])\n\n else:\n # Coregistraion of the white matter segmentations\n for dic_slice in self.slices:\n name_j_transform = 'transform_slice_' + str(dic_slice.id) + find_ants_transfo_name(transfo_type)[0]\n new_reg_list = dic_slice.reg_to_M.append(name_j_transform)\n dic_slice.set(reg_to_m=new_reg_list)\n\n if first:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n dic_slice.set(wm_seg_m=seg_m.astype(int))\n dic_slice.set(wm_seg_m_flat=seg_m.flatten().astype(int))\n\n mean_seg = compute_majority_vote_mean_seg([dic_slice.wm_seg_M for dic_slice in self.slices])\n\n save_image(mean_seg, 'mean_seg', path=self.model_dic_name+'/', im_type='uint8')\n return mean_seg", "metadata": "root.ModelDictionaryBySlice.find_coregistration", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 957 }, { "content": " def compute_mean_dic_image(self, im_data_set):\n \"\"\"\n Compute the mean image of the dictionary\n\n Used to co-register the dictionary images into teh common groupwise space\n\n :param im_data_set:\n :return mean: mean image of the input data set\n \"\"\"\n mean = np.sum(im_data_set, axis=0)\n\n mean /= float(self.J)\n\n return mean", "metadata": "root.ModelDictionaryBySlice.compute_mean_dic_image", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1006 }, { "content": " def coregister_data(self, transfo_to_apply=None):\n \"\"\"\n Apply to each image slice of the dictionary the transformations found registering the segmentation slices.\n The co_registered images are saved for each slice as im_M\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n list_im = [dic_slice.im for dic_slice in self.slices]\n list_gm_seg = [dic_slice.gm_seg for dic_slice in self.slices]\n\n for dic_slice in self.slices:\n for n_transfo, transfo in enumerate(transfo_to_apply):\n im_m = apply_ants_transfo(self.compute_mean_dic_image(list_im), dic_slice.im, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n # apply_2D_rigid_transformation(self.im[j], self.RM[j]['tx'], self.RM[j]['ty'], self.RM[j]['theta'])\n if self.param.seg_type == 'gm':\n gm_seg_m = apply_ants_transfo(self.compute_mean_dic_image(list_gm_seg), dic_slice.gm_seg, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n\n dic_slice.set(im_m=im_m)\n dic_slice.set(im_m_flat=im_m.flatten())\n if self.param.seg_type == 'gm':\n dic_slice.set(gm_seg_m=gm_seg_m)\n dic_slice.set(gm_seg_m_flat=gm_seg_m.flatten())", "metadata": "root.ModelDictionaryBySlice.coregister_data", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1022 }, { "content": " def load_model_dictionary(self):\n \"\"\"\n Load the model dictionary from a saved one\n \"\"\"\n import itertools\n\n sct.printv('\\nLoading the model dictionary ...', self.param.verbose, 'normal')\n\n j_im = 0\n j_seg = 0\n j_im_m = 0\n j_seg_m = 0\n\n for subject_dir in os.listdir(self.model_dic_name):\n subject_path = self.model_dic_name + '/' + subject_dir\n if os.path.isdir(subject_path) and 'transformations' not in subject_path:\n\n for file_name in os.listdir(subject_path):\n if '_im.nii' in file_name:\n reg_list = ['transform_slice_' + str(j_im) + find_ants_transfo_name(transfo_type)[0]\n for transfo_type in self.coregistration_transfos]\n\n slice_level = 0\n name_list = file_name.split('_')\n for word in name_list:\n if word in self.level_label.values():\n slice_level = get_key_from_val(self.level_label, word)\n\n self.slices.append(Slice(slice_id=j_im, im=Image(subject_path + '/' + file_name).data,\n level=slice_level, reg_to_m=reg_list))\n j_im += 1\n\n if '_seg.nii' in file_name:\n self.slices[j_seg].set(seg=Image(subject_path + '/' + file_name).data)\n j_seg += 1\n\n if '_im_model_space.nii' in file_name:\n im_m_slice = Image(subject_path + '/' + file_name).data\n self.slices[j_im_m].set(im_m=im_m_slice, im_m_flat=im_m_slice.flatten())\n j_im_m += 1\n\n if '_seg_model_space.nii' in file_name:\n seg_m_slice = Image(subject_path + '/' + file_name).data\n self.slices[j_seg_m].set(seg_m=seg_m_slice, seg_m_flat=seg_m_slice.flatten())\n j_seg_m += 1\n\n # number of atlases in the dictionary\n self.J = len(self.slices) # len([slice.im for slice in self.slices])\n\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im_M.flatten())\n\n self.mean_image = Image(self.model_dic_name + '/mean_image.nii.gz').data\n self.mean_seg = Image(self.model_dic_name + '/mean_seg.nii.gz').data", "metadata": "root.ModelDictionaryBySlice.load_model_dictionary", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1051 }, { "content": " def show_data(self):\n \"\"\"\n show the 10 first slices of the model dictionary\n \"\"\"\n for dic_slice in self.slices[:10]:\n fig = plt.figure()\n\n seg_subplot = fig.add_subplot(2, 3, 1)\n seg_subplot.set_title('Original space - seg')\n im_seg = seg_subplot.imshow(dic_slice.wm_seg)\n im_seg.set_interpolation('nearest')\n im_seg.set_cmap('gray')\n\n seg_m_subplot = fig.add_subplot(2, 3, 2)\n seg_m_subplot.set_title('Common groupwise space - seg')\n im_seg_m = seg_m_subplot.imshow(dic_slice.wm_seg_M)\n im_seg_m.set_interpolation('nearest')\n im_seg_m.set_cmap('gray')\n\n mean_seg_subplot = fig.add_subplot(2, 3, 3)\n mean_seg_subplot.set_title('Mean seg')\n im_mean_seg = mean_seg_subplot.imshow(np.asarray(self.mean_seg))\n im_mean_seg.set_interpolation('nearest')\n im_mean_seg.set_cmap('gray')\n\n slice_im_subplot = fig.add_subplot(2, 3, 4)\n slice_im_subplot.set_title('Original space - data ')\n im_slice_im = slice_im_subplot.imshow(dic_slice.im)\n im_slice_im.set_interpolation('nearest')\n im_slice_im.set_cmap('gray')\n\n slice_im_m_subplot = fig.add_subplot(2, 3, 5)\n slice_im_m_subplot.set_title('Common groupwise space - data ')\n im_slice_im_m = slice_im_m_subplot.imshow(dic_slice.im_M)\n im_slice_im_m.set_interpolation('nearest')\n im_slice_im_m.set_cmap('gray')\n\n plt.suptitle('Slice ' + str(dic_slice.id))\n plt.show()", "metadata": "root.ModelDictionaryBySlice.show_data", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1107 }, { "content": "class Model:\n \"\"\"\n Model used by the supervised gray matter segmentation method\n\n \"\"\"\n\n # ----------------------------------------------------------------------------------------------------------------------", "metadata": "root.Model", "header": "['module', '___EOS___']", "index": 1150 }, { "content": " def __init__(self, model_param=None, dictionary=None, k=0.8):\n \"\"\"\n Model constructor\n\n :param model_param: model parameters, type: Param\n\n :param dictionary: type: ModelDictionary\n\n :param k: Amount of variability to keep in the PCA reduced space, type: float\n \"\"\"\n if model_param is None:\n if dictionary is not None:\n self.param = dictionary.param\n else:\n self.param = Param()\n else:\n self.param = model_param\n\n self.dictionary = dictionary\n\n sct.printv(\"The shape of the dictionary used for the PCA is \"\n \"(\" + str(self.dictionary.N) + \",\" + str(self.dictionary.J) + \")\", verbose=self.param.verbose)\n\n # Instantiate a PCA object given the dictionary just build\n sct.printv('\\nCreating a reduced common space (using a PCA) ...', self.param.verbose, 'normal')\n\n if self.param.todo_model == 'compute':\n # creation of a PCA\n self.pca = PCA(np.asarray(self.dictionary.slices), k=k)\n # updating the dictionary mean_image \n self.dictionary.mean_image = self.pca.mean_image\n\n save_image(self.pca.mean_image, 'mean_image', path=self.dictionary.model_dic_name+'/')\n # saving the PCA data into a text file\n self.pca.save_data(self.dictionary.model_dic_name)\n\n elif self.param.todo_model == 'load':\n # loading PCA data from file\n pca_mean_data, pca_eig_pairs = self.load_pca_file()\n\n # creation of a PCA from the loaded data\n self.pca = PCA(np.asarray(self.dictionary.slices), mean_vect=pca_mean_data, eig_pairs=pca_eig_pairs, k=k)\n if self.param.verbose == 2:\n self.pca.plot_projected_dic()", "metadata": "root.Model.__init__", "header": "['class', 'Model', ':', '___EOS___']", "index": 1155 }, { "content": " def load_pca_file(self, file_name='data_pca.txt'):\n \"\"\"\n Load a PCA from a text file containing the appropriate information (previously saved)\n\n :param file_name: name of the PCA text file\n \"\"\"\n fic_data_pca = open(self.param.path_dictionary + '/' + file_name, 'r')\n mean_data_list = fic_data_pca.readline().split(',')\n eig_pairs_list = fic_data_pca.readline().split(',')\n fic_data_pca.close()\n\n mean_data_vect = []\n for val in mean_data_list:\n mean_data_vect.append([float(val)])\n mean_data_vect = np.asarray(mean_data_vect)\n\n eig_pairs_vect = []\n for pair in eig_pairs_list:\n eig_val_str, eig_vect_str = pair.split(';')\n eig_vect_str = eig_vect_str.split(' ')\n # eig_vect_str[-1] = eig_vect_str[-1][:-1]\n eig_vect = []\n for i, v in enumerate(eig_vect_str):\n if v != '' and v != '\\n':\n eig_vect.append(float(v))\n eig_pairs_vect.append((float(eig_val_str), eig_vect))\n\n return mean_data_vect, eig_pairs_vect", "metadata": "root.Model.load_pca_file", "header": "['class', 'Model', ':', '___EOS___']", "index": 1201 }, { "content": "class TargetSegmentationPairwise:\n \"\"\"\n Contains all the function to segment the gray matter an a target image given a model\n\n - registration of the target to the model space\n\n - projection of the target slices on the reduced model space\n\n - selection of the model slices most similar to the target slices\n\n - computation of the resulting target segmentation by label fusion of their segmentation\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def select_k_slices_old(self, beta, poped=None):\n \"\"\"\n Select the K dictionary slices most similar to the target slice\n\n :param beta: Dictionary similarities\n\n :return selected: numpy array of index of the selected dictionary slices\n \"\"\"\n selected = []\n\n slices_index = range(self.model.dictionary.J)\n if poped is not None:\n slices_index.pop(poped)\n\n if isinstance(beta[0], (list, np.ndarray)):\n for beta_slice in beta:\n selected_by_slice = []\n for j, beta_j in zip(slices_index, beta_slice):\n if beta_j > self.epsilon:\n selected_by_slice.append(j)\n # selected.append(np.asarray(selected_by_slice))\n selected.append(selected_by_slice)\n else:\n for j, beta_j in zip(slices_index, beta):\n if beta_j > self.epsilon:\n selected.append(j)\n\n return np.asarray(selected)\n\n def label_fusion_old(self, selected_slices):\n \"\"\"\n Compute the resulting segmentation by label fusion of the segmentation of the selected dictionary slices\n\n :param selected_slices: array of indexes of the selected dictionary slices\n\n :return res_seg_model_space: Image of the resulting segmentation for the target image (in the model space)\n \"\"\"\n res_seg_model_space = []\n\n if isinstance(selected_slices[0], (list, np.ndarray)):\n for i_target, selected_by_slice in enumerate(selected_slices):\n kept_slices_segmentation = []\n for j in selected_by_slice:\n kept_slices_segmentation.append(self.model.dictionary.slices[j].seg_M)\n slice_seg = compute_majority_vote_mean_seg(kept_slices_segmentation)\n res_seg_model_space.append(slice_seg)\n else:\n kept_slices_segmentation = []\n for j in selected_slices:\n kept_slices_segmentation.append(self.model.dictionary.slices[j].seg_M)\n slice_seg = compute_majority_vote_mean_seg(kept_slices_segmentation)\n res_seg_model_space = slice_seg\n\n res_seg_model_space = np.asarray(res_seg_model_space)\n # save_image(res_seg_model_space, 'res_GM_seg_model_space')\n\n return Image(res_seg_model_space)\n '''\n\n # ------------------------------------------------------------------------------------------------------------------\n\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def majority_vote_segmentation(self):\n \"\"\"\n Mean segmentation using only the slices of the same level in the dictionary\n \"\"\"\n target_seg = []\n for target_slice in self.target:\n dataset_by_level = []\n for dic_slice in self.model.dictionary.slices:\n if dic_slice.level == target_slice.level:\n dataset_by_level.append(dic_slice.seg_M)\n if dataset_by_level:\n target_slice_seg = compute_majority_vote_mean_seg(dataset_by_level, threshold=0.5)\n Image(param=target_slice_seg, absolutepath='target_gm_seg_slice' + str(target_slice.id) + '.nii.gz').save()\n target_seg.append(target_slice_seg)\n else:\n target_seg.append(np.zeros(target_slice.im.shape))\n Image(param=np.asarray(target_seg), absolutepath='target_gm_seg.nii.gz').save()\n '''\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def show_projected_target(self):\n # Retrieving projected image from the mean image & its coordinates\n import copy\n\n index = 0\n fig1 = plt.figure()\n fig2 = plt.figure()\n # loop across all the projected slices coord\n for coord in self.coord_projected_target:\n img_reducted = copy.copy(self.model.pca.mean_data_vect)\n # loop across coord and build projected image\n for i in range(0, coord.shape[0]):\n img_reducted += int(coord[i][0]) self.model.pca.kept_modes.T[i].reshape(self.model.pca.N, 1)\n\n if self.model.param.split_data:\n n = int(sqrt(self.model.pca.N * 2))\n else:\n n = int(sqrt(self.model.pca.N))\n\n # Plot original image\n orig_ax = fig1.add_subplot(10, 3, index)\n orig_ax.set_title('original slice {} '.format(index))\n if self.model.param.split_data:\n imgplot = orig_ax.imshow(self.target.data[index, :, :].reshape(n / 2, n))\n else:\n imgplot = orig_ax.imshow(self.target.data[index].reshape(n, n))\n imgplot.set_interpolation('nearest')\n imgplot.set_cmap('gray')\n # plt.title('Original Image')\n # plt.show()\n\n index += 1\n # Plot projected image image\n proj_ax = fig2.add_subplot(10, 3, index)\n proj_ax.set_title('slice {} projected'.format(index))\n if self.model.param.split_data:\n imgplot = proj_ax.imshow(img_reducted.reshape(n / 2, n))\n #imgplot = plt.imshow(img_reducted.reshape(n / 2, n))\n else:\n # imgplot = plt.imshow(img_reducted.reshape(n, n))\n imgplot = proj_ax.imshow(img_reducted.reshape(n, n))\n imgplot.set_interpolation('nearest')\n imgplot.set_cmap('gray')\n # plt.title('Projected Image')\n # plt.show()\n plt.show()\n '''", "metadata": "root.TargetSegmentationPairwise", "header": "['module', '___EOS___']", "index": 1233 }, { "content": " def __init__(self, model, target_image=None, levels_image=None, tau=None):\n \"\"\"\n Target gray matter segmentation constructor\n\n :param model: Model used to compute the segmentation, type: Model\n\n :param target_image: Target image to segment gray matter on, type: Image\n\n :param tau: Weighting parameter associated with the geodesic distances in the model dictionary, type: float\n \"\"\"\n self.model = model\n\n # Get the target image\n if len(target_image.data.shape) == 3:\n self.target = [Slice(slice_id=i_slice, im=target_slice) for i_slice, target_slice in enumerate(target_image.data)]\n elif len(target_image.data.shape) == 2:\n self.target = [Slice(slice_id=0, im=target_image.data)]\n\n # if levels_image is not None:\n if isinstance(levels_image, Image):\n nz_coord = levels_image.getNonZeroCoordinates()\n for i_level_slice, level_slice in enumerate(levels_image.data):\n nz_val = []\n for coord in nz_coord:\n if coord.x == i_level_slice:\n nz_val.append(level_slice[coord.y, coord.z])\n try:\n self.target[i_level_slice].set(level=int(round(sum(nz_val)/len(nz_val))))\n except ZeroDivisionError:\n sct.printv('No level label for slice ' + str(i_level_slice) + ' of target')\n self.target[i_level_slice].set(level=0)\n elif isinstance(levels_image, str):\n self.target[0].set(level=get_key_from_val(self.model.dictionary.level_label, levels_image))\n\n # self.majority_vote_segmentation()\n\n # self.target_M = self.target_pairwise_registration()\n self.target_pairwise_registration()\n\n # coord_projected_target is a list of all the coord of the target's projected slices\n sct.printv('\\nProjecting the target image in the reduced common space ...', model.param.verbose, 'normal')\n # self.coord_projected_target = model.pca.project(self.target_M) if self.target_M is not None else None\n self.coord_projected_target = model.pca.project([target_slice.im_M for target_slice in self.target])\n\n self.epsilon = round(1.0/self.model.dictionary.J, 4)/2\n print 'epsilon : ', self.epsilon\n\n if tau is None:\n self.tau = self.compute_tau()\n else:\n self.tau = tau\n\n if levels_image is not None:\n self.beta = self.compute_beta(self.coord_projected_target, target_levels=np.asarray([target_slice.level for target_slice in self.target]), tau=self.tau)\n else:\n self.beta = self.compute_beta(self.coord_projected_target, tau=self.tau)\n\n sct.printv('\\nSelecting the dictionary slices most similar to the target ...', model.param.verbose, 'normal')\n\n self.selected_k_slices = self.select_k_slices(self.beta)\n\n slice_levels = np.asarray([self.model.dictionary.level_label[dic_slice.level] for dic_slice in self.model.dictionary.slices])\n fic_selected_slices = open('selected_slices.txt', 'w')\n fic_selected_slices.write(str(slice_levels[self.selected_k_slices.reshape(self.model.dictionary.J,)]))\n fic_selected_slices.close()\n\n sct.printv('\\nComputing the result gray matter segmentation ...', model.param.verbose, 'normal')\n # self.target_GM_seg_M = self.label_fusion(self.selected_k_slices)\n self.label_fusion(self.selected_k_slices)\n\n sct.printv('\\nRegistering the result gray matter segmentation back into the target original space...',\n model.param.verbose, 'normal')\n self.target_pairwise_registration(inverse=True)", "metadata": "root.TargetSegmentationPairwise.__init__", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1245 }, { "content": " def target_pairwise_registration(self, inverse=False):\n \"\"\"\n Register the target image into the model space\n\n Affine (or rigid + affine) registration of the target on the mean model image --> pairwise\n\n :param inverse: if True, apply the inverse warping field of the registration target -> model space\n to the result gray matter segmentation of the target\n (put it back in it's original space)\n \"\"\"\n if not inverse:\n # Registration target --> model space\n target_model_space = []\n mean_dic_im = self.model.pca.mean_image\n for i, target_slice in enumerate(self.target):\n moving_target_slice = target_slice.im\n for transfo in self.model.dictionary.coregistration_transfos:\n transfo_name = transfo + '_transfo_target2model_space_slice_' + str(i) + find_ants_transfo_name(transfo)[0]\n\n moving_target_slice = apply_ants_transfo(mean_dic_im, moving_target_slice, binary=False, transfo_type=transfo, transfo_name=transfo_name)\n self.target[i].set(im_m=moving_target_slice)\n # target_model_space.append(moving_target_slice)\n # return Image(param=np.asarray(target_model_space))\n else:\n # Inverse registration result in model space --> target original space\n res_seg = []\n # mean_dic_im = self.model.pca.mean_image\n\n # for i, slice_M in enumerate(self.target_GM_seg_M.data):\n for i, target_slice in enumerate(self.target):\n if self.model.param.seg_type == 'wm':\n moving_seg_slice = target_slice.wm_seg_M\n else:\n moving_seg_slice = target_slice.gm_seg_M\n\n for transfo in self.model.dictionary.coregistration_transfos:\n transfo_name = transfo + '_transfo_target2model_space_slice_' + str(i) + find_ants_transfo_name(transfo)[0]\n moving_seg_slice = apply_ants_transfo(self.model.dictionary.mean_seg, moving_seg_slice, search_reg=False, binary=True, inverse=1, transfo_type=transfo, transfo_name=transfo_name)\n\n if self.model.param.seg_type == 'wm':\n target_slice.set(wm_seg=moving_seg_slice)\n else:\n target_slice.set(gm_seg=moving_seg_slice)\n # res_seg.append(moving_seg_slice)\n # return Image(param=np.asarray(res_seg))", "metadata": "root.TargetSegmentationPairwise.target_pairwise_registration", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1320 }, { "content": " def compute_beta(self, coord_target, target_levels=None, dataset_coord=None, dataset_levels=None, tau=0.01):\n \"\"\"\n Compute the model similarity (beta) between each model slice and each target image slice\n\n beta_j = (1/Z)exp(-tausquare_norm(target_coordinate - slice_j_coordinate))\n\n Z is the partition function that enforces the constraint that sum(beta)=1\n\n :param coord_target: coordinates of the target image in the reduced model space\n\n :param tau: weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n\n :return:\n \"\"\"\n if dataset_coord is None:\n # in the dataset_coord matrix, each column correspond to the projection of one of the original data image,\n # the transpose operator .T enable the loop to iterate over all the images coord\n dataset_coord = self.model.pca.dataset_coord.T\n dataset_levels = [dic_slice.level for dic_slice in self.model.dictionary.slices]\n\n beta = []\n\n # TODO: SEE IF WE NEED TO CHECK THE SECOND DIMENSION OF COORD TARGET OR THE FIRST ...\n if isinstance(coord_target[0], (list, np.ndarray)):\n for i_target, coord_projected_slice in enumerate(coord_target):\n beta_slice = []\n for j_slice, coord_slice_j in enumerate(dataset_coord):\n square_norm = np.linalg.norm((coord_projected_slice - coord_slice_j), 2)\n if target_levels is not None:\n if target_levels[i_target] == dataset_levels[j_slice]:\n beta_slice.append(exp(tausquare_norm))\n else:\n beta_slice.append(exp(-tausquare_norm)/1.2(target_levels[i_target] - dataset_levels[j_slice]))\n else:\n beta_slice.append(exp(tausquare_norm))\n\n try:\n beta_slice /= np.sum(beta_slice)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta_slice\n\n beta.append(beta_slice)\n else:\n for j_slice, coord_slice_j in enumerate(dataset_coord):\n square_norm = np.linalg.norm((coord_target - coord_slice_j), 2)\n if target_levels is not None:\n if target_levels == dataset_levels[j_slice]:\n beta.append(exp(tausquare_norm))\n else:\n beta.append(exp(-tausquare_norm)/1.2(target_levels - dataset_levels[j_slice]))\n else:\n beta.append(exp(tausquare_norm))\n\n try:\n beta /= np.sum(beta)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta\n\n return np.asarray(beta)", "metadata": "root.TargetSegmentationPairwise.compute_beta", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1367 }, { "content": " def compute_tau(self):\n \"\"\"\n Compute the weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n :return:\n \"\"\"\n sct.printv('\\nComputing Tau ... \\n'\n '(Tau is a weighting parameter indicating the decay constant associated with a geodesic distance between a given atlas and a projected target image, see Asman paper, eq (16))', 1, 'normal')\n from scipy.optimize import minimize\n\n def to_minimize(tau):\n \"\"\"\n Compute the sum of the L0 norm between a slice segmentation and the resulting segmentation that would be\n found if the slice was a target image for a given tau\n\n For a given model, Tau is the parameter that would minimize this function\n\n :param tau:\n\n :return sum_norm:\n\n \"\"\"\n sum_norm = 0\n for dic_slice in self.model.dictionary.slices:\n projected_dic_slice_coord = self.model.pca.project_array(dic_slice.im_M_flat)\n coord_dic_slice_dataset = np.delete(self.model.pca.dataset_coord.T, dic_slice.id, 0)\n dic_slice_dataset_levels = np.delete(np.asarray(dic_levels), dic_slice.id, 0)\n beta_dic_slice = self.compute_beta(projected_dic_slice_coord, target_levels=dic_slice.level, dataset_coord=coord_dic_slice_dataset, dataset_levels=dic_slice_dataset_levels, tau=tau)\n kj = self.select_k_slices(beta_dic_slice) # , poped=dic_slice.id)\n est_segm_j = self.label_fusion(kj)\n\n if self.model.param.seg_type == 'wm':\n sum_norm += l0_norm(dic_slice.wm_seg_M, est_segm_j.data)\n else:\n sum_norm += l0_norm(dic_slice.gm_seg_M, est_segm_j.data)\n return sum_norm\n\n dic_levels = [dic_slice.level for dic_slice in self.model.dictionary.slices]\n\n est_tau = minimize(to_minimize, 0.001, method='Nelder-Mead', options={'xtol': 0.0005})\n sct.printv('Estimated tau : ' + str(est_tau.x[0]))\n if self.model.param.todo_model == 'compute':\n fic = open(self.model.dictionary.model_dic_name + '/tau.txt', 'w')\n fic.write(str(est_tau.x[0]))\n fic.close()\n return float(est_tau.x[0])", "metadata": "root.TargetSegmentationPairwise.compute_tau", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1431 }, { "content": " def select_k_slices(self, beta):\n \"\"\"\n Select the K dictionary slices most similar to the target slice\n\n :param beta: Dictionary similarities\n\n :return selected: numpy array of segmentation of the selected dictionary slices\n \"\"\"\n\n kept_slice_index = []\n\n if isinstance(beta[0], (list, np.ndarray)):\n for beta_slice in beta:\n selected_index = beta_slice > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices.append(segmentation_slices[selected_index])\n kept_slice_index.append(selected_index)\n\n else:\n kept_slice_index = beta > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices = segmentation_slices[selected_index]\n\n return np.asarray(kept_slice_index)", "metadata": "root.TargetSegmentationPairwise.select_k_slices", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1540 }, { "content": " def label_fusion(self, selected_index):\n \"\"\"\n Compute the resulting segmentation by label fusion of the segmentation of the selected dictionary slices\n\n :param selected_index: array of indexes (as a boolean array) of the selected dictionary slices\n\n :return res_seg_model_space: Image of the resulting segmentation for the target image (in the model space)\n \"\"\"\n if self.model.param.seg_type == 'wm':\n segmentation_slices = np.asarray([dic_slice.wm_seg_M for dic_slice in self.model.dictionary.slices])\n else:\n segmentation_slices = np.asarray([dic_slice.gm_seg_M for dic_slice in self.model.dictionary.slices])\n\n res_seg_model_space = []\n '''\n print '---------- IN LABEL_FUSION : shape selected_k_slices ---------------->', selected_k_slices.shape,\n ' len = ', len(selected_k_slices.shape)\n print '---------- IN LABEL_FUSION : type selected_k_slices[0] ---------------->', type(selected_k_slices[0])\n '''\n # if isinstance(selected_slices[0][0][0], (list, np.ndarray)):\n # if len(selected_slices[0].shape) == 3:\n if isinstance(selected_index[0], (list, np.ndarray)):\n\n for i, selected_ind_by_slice in enumerate(selected_index): # selected_slices:\n slice_seg = compute_majority_vote_mean_seg(segmentation_slices[selected_ind_by_slice])\n res_seg_model_space.append(slice_seg)\n if self.model.param.seg_type == 'wm':\n self.target[i].set(wm_seg_m=slice_seg)\n else:\n self.target[i].set(gm_seg_m=slice_seg)\n # res_seg_model_space = map(compute_majority_vote_mean_seg, selected_slices)\n\n else:\n # res_seg_model_space = compute_majority_vote_mean_seg(selected_slices)\n res_seg_model_space = compute_majority_vote_mean_seg(segmentation_slices[selected_index])\n\n res_seg_model_space = np.asarray(res_seg_model_space)\n # save_image(res_seg_model_space, 'res_GM_seg_model_space')\n\n return Image(param=res_seg_model_space)", "metadata": "root.TargetSegmentationPairwise.label_fusion", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1571 }, { "content": " def plot_projected_dic(self, nb_modes=3):\n \"\"\"\n plot the pca first modes and the target projection if target is provided.\n\n on a second plot, highlight the selected dictionary slices for one target slice in particular\n\n :param nb_modes:\n :return:\n \"\"\"\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()\n\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target, to_highlight=(5, self.selected_k_slices[5])) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()", "metadata": "root.TargetSegmentationPairwise.plot_projected_dic", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1613 }, { "content": "class TargetSegmentationGroupwise:\n \"\"\"\n Contains all the function to segment the gray matter an a target image given a model\n\n - registration of the target to the model space\n\n - projection of the target slices on the reduced model space\n\n - selection of the model slices most similar to the target slices\n\n - computation of the resulting target segmentation by label fusion of their segmentation\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n\n # ------------------------------------------------------------------------------------------------------------------", "metadata": "root.TargetSegmentationGroupwise", "header": "['module', '___EOS___']", "index": 1702 }, { "content": " def __init__(self, model, target_image=None, tau=None):\n \"\"\"\n Target gray matter segmentation constructor\n\n :param model: Model used to compute the segmentation, type: Model\n\n :param target_image: Target image to segment gray matter on, type: Image\n\n :param tau: Weighting parameter associated with the geodesic distances in the model dictionary, type: float\n \"\"\"\n self.model = model\n\n # Get the target image\n self.target = target_image\n '''\n save_image(self.target.data, 'target_image')\n print '---TARGET IMAGE IN CLASS TargetSegmentation : ', self.target.data\n save_image(self.target.data[0],'target_slice0_targetSeg_'+self.model.param.todo_model)\n '''\n self.epsilon = round(1.0/self.model.dictionary.J, 5) - 0.0001 # /2\n\n if tau is None:\n self.tau = self.compute_tau()\n else:\n self.tau = tau\n\n self.target_M, self.R_target_to_M = self.target_groupwise_registration()\n self.target_M.file_name = 'target_model_space'\n self.target_M.ext = '.nii.gz'\n # self.target_M.data = self.target_M.data.astype('float32')\n self.target_M.save()\n\n '''\n print '----- registered target ---- ', self.target_M.data\n save_image(self.target_M.data, 'target_image_model_space')\n save_image(self.target_M.data[0],'target_registered_slice0_rigidreg_'+self.model.param.todo_model)\n '''\n\n # coord_projected_target is a list of all the coord of the target's projected slices\n sct.printv('\\nProjecting the target image in the reduced common space ...', model.param.verbose, 'normal')\n self.coord_projected_target = model.pca.project(self.target_M) if self.target_M is not None else None\n\n '''\n print '----SHAPE COORD PROJECTED TARGET -----', self.coord_projected_target.shape\n print '----COORD PROJECTED TARGET -----', self.coord_projected_target\n '''\n\n self.beta = self.compute_beta(self.coord_projected_target, tau=self.tau)\n '''\n print '----------- BETAS :', self.beta\n self.beta = self.compute_beta(self.coord_projected_target, tau=0.00114)\n '''\n sct.printv('\\nSelecting the dictionary slices most similar to the target ...', model.param.verbose, 'normal')\n\n self.selected_k_slices = self.select_k_slices(self.beta)\n '''\n print '----SELECTED K -----', self.selected_k_slices\n print '----SHAPE SELECTED K -----', self.selected_k_slices.shape\n '''\n sct.printv('\\nComputing the result gray matter segmentation ...', model.param.verbose, 'normal')\n self.target_GM_seg_M = self.label_fusion(self.selected_k_slices)\n self.target_GM_seg_M.file_name = 'res_gmseg_model_space'\n self.target_GM_seg_M.ext = '.nii.gz'\n # self.target_M.data = self.target_M.data.astype('float32')\n self.target_GM_seg_M.save()\n sct.printv('\\nRegistering the result gray matter segmentation back into the target original space...',\n model.param.verbose, 'normal')\n self.target_GM_seg = self.target_groupwise_registration(inverse=True)", "metadata": "root.TargetSegmentationGroupwise.__init__", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1714 }, { "content": " def compute_beta(self, coord_target, dataset_coord=None, tau=0.01):\n \"\"\"\n Compute the model similarity (beta) between each model slice and each target image slice\n\n beta_j = (1/Z)exp(-tausquare_norm(target_coordinate - slice_j_coordinate))\n\n Z is the partition function that enforces the constraint that sum(beta)=1\n\n :param coord_target: coordinates of the target image in the reduced model space\n\n :param tau: weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n\n :return:\n \"\"\"\n if dataset_coord is None:\n # in the dataset_coord matrix, each column correspond to the projection of one of the original data image,\n # the transpose operator .T enable the loop to iterate over all the images coord\n dataset_coord = self.model.pca.dataset_coord.T\n\n beta = []\n '''\n sct.printv('----------- COMPUTING BETA --------------', 1, 'info')\n print '------ TAU = ', tau\n print '---------- IN BETA : coord_target ---------------->', coord_target\n print '---------- IN BETA : shape coord_target ---------------->', coord_target.shape, ' len = ',\n len(coord_target.shape)\n print '---------- IN BETA : type coord_target[0][0] ---------------->', type(coord_target[0][0])\n '''\n # TODO: SEE IF WE NEED TO CHECK THE SECOND DIMENSION OF COORD TARGET OR THE FIRST ...\n if isinstance(coord_target[0], (list, np.ndarray)):\n for i_target, coord_projected_slice in enumerate(coord_target):\n beta_slice = []\n for coord_slice_j in dataset_coord:\n square_norm = np.linalg.norm((coord_projected_slice - coord_slice_j), 2)\n beta_slice.append(exp(-tausquare_norm))\n\n '''\n print 'beta case 1 :', beta\n print '--> sum beta ', Z\n '''\n try:\n if np.sum(beta_slice) != 0:\n beta_slice /= np.sum(beta_slice)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta_slice\n\n beta.append(beta_slice)\n else:\n for coord_slice_j in dataset_coord:\n square_norm = np.linalg.norm((coord_target - coord_slice_j), 2)\n beta.append(exp(-tausquare_norm))\n\n try:\n beta /= np.sum(beta)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta\n\n return np.asarray(beta)", "metadata": "root.TargetSegmentationGroupwise.compute_beta", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1784 }, { "content": " def compute_tau(self):\n \"\"\"\n Compute the weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n :return:\n \"\"\"\n sct.printv('\\nComputing Tau ... \\n'\n '(Tau is a weighting parameter indicating the decay constant associated with a geodesic distance '\n 'between a given atlas and a projected target image, see Asman paper, eq (16))', 1, 'normal')\n from scipy.optimize import minimize\n\n def to_minimize(tau):\n \"\"\"\n Compute the sum of the L0 norm between a slice segmentation and the resulting segmentation that would be\n found if the slice was a target image for a given tau\n\n For a given model, Tau is the parameter that would minimize this function\n\n :param tau:\n\n :return sum_norm:\n\n \"\"\"\n sum_norm = 0\n for dic_slice in self.model.dictionary.slices:\n projected_dic_slice_coord = self.model.pca.project_array(dic_slice.im_M_flat)\n\n coord_dic_slice_dataset = np.delete(self.model.pca.dataset_coord.T, dic_slice.id, 0)\n\n beta_dic_slice = self.compute_beta(projected_dic_slice_coord, dataset_coord=coord_dic_slice_dataset,\n tau=tau)\n kj = self.select_k_slices(beta_dic_slice) # , poped=dic_slice.id)\n est_segm_j = self.label_fusion(kj)\n\n sum_norm += l0_norm(dic_slice.seg_M, est_segm_j.data)\n return sum_norm\n\n est_tau = minimize(to_minimize, 0, method='Nelder-Mead', options={'xtol': 0.0005})\n sct.printv('Estimated tau : ' + str(est_tau.x[0]))\n if self.model.param.todo_model == 'compute':\n fic = open(self.model.dictionary.model_dic_name + '/tau.txt', 'w')\n fic.write(str(est_tau.x[0]))\n fic.close()\n return float(est_tau.x[0])", "metadata": "root.TargetSegmentationGroupwise.compute_tau", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1847 }, { "content": " def compute_mu(self, beta):\n \"\"\"\n Compute the weighted mean of the dictionary slices projection weights\n\n :param beta: similarities vector for one target slice\n\n :return mu:\n \"\"\"\n '''\n mu = []\n for beta_slice in beta:\n mu.append(self.model.pca.dataset_coord.dot(beta_slice))\n return np.asarray(mu)\n '''\n return self.model.pca.dataset_coord.dot(beta)", "metadata": "root.TargetSegmentationGroupwise.compute_mu", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1893 }, { "content": " def compute_sigma(self, beta, mu):\n \"\"\"\n Compute the weighted standard deviation of the dictionary slices projection weights\n\n :param beta: similarities vector for one target slice\n\n :param mu: weighted mean of the dictionary slices projection weights for one target slice\n\n :return sigma:\n \"\"\"\n '''\n sigma = []\n for beta_slice, mu_slice in zip(beta, mu):\n\n sigma.append([beta_slice.dot((self.model.pca.dataset_coord[v, :] - mu_slice[v]) 2)\n for v in range(len(mu_slice))])\n\n return np.asarray(sigma)\n '''\n return np.asarray([beta.dot((self.model.pca.dataset_coord[v, :] - mu[v]) 2) for v in range(len(mu))])", "metadata": "root.TargetSegmentationGroupwise.compute_sigma", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1910 }, { "content": " def target_groupwise_registration(self, inverse=False):\n \"\"\"\n Register the target image into the model space\n\n Affine (or rigid + affine) registration of the target on the mean model image --> pairwise\n\n :param inverse: if True, apply the inverse warping field of the registration target -> model space\n to the result gray matter segmentation of the target\n (put it back in it's original space)\n \"\"\"\n if not inverse:\n # Registration target --> model space\n from scipy.optimize import minimize\n\n # Initialisation\n target_m = []\n\n def to_minimize(t_param, n_slice):\n \"\"\"\n\n :param :\n\n :return sum_norm:\n\n \"\"\"\n moved_target_slice = Image(param=np.asarray(apply_2d_transformation(self.target.data[n_slice],\n tx=t_param[0], ty=t_param[1],\n theta=t_param[2],\n s=t_param[3])[0]))\n\n coord_moved_target = self.model.pca.project_array(moved_target_slice.data.flatten())\n coord_moved_target = coord_moved_target.reshape(coord_moved_target.shape[0],)\n\n beta = self.compute_beta(coord_moved_target, tau=self.tau)\n mu = self.compute_mu(beta)\n sigma = self.compute_sigma(beta, mu)\n\n target_th_slice = np.sum((np.asarray([dic_slice.im_M for dic_slice in self.model.dictionary.slices]).T\n * beta[n_slice]).T, axis=0)\n sq_norm = np.linalg.norm(target_th_slice - moved_target_slice.data, 2)2\n\n gauss = np.sum(((coord_moved_target - mu)/sigma)2)\n return sq_norm*gauss\n\n r_target_to_m = []\n for i_slice, target_slice in enumerate(self.target.data):\n x0 = [0, 0, 0, 1]\n est_transfo = minimize(to_minimize, x0, args=i_slice, method='Nelder-Mead', options={'xtol': 0.00005})\n target_m_slice, r_slice = apply_2d_transformation(target_slice, tx=est_transfo.x[0],\n ty=est_transfo.x[1], theta=est_transfo.x[2],\n s=est_transfo.x[3])\n print est_transfo.x\n target_m.append(target_m_slice)\n r_target_to_m.append(r_slice)\n return Image(param=np.asarray(target_m)), r_target_to_m\n\n else:\n # Inverse registration result in model space --> target original space\n moved_res = []\n for i_slice, res_m_slice in enumerate(self.target_GM_seg_M.data):\n moved_res.append(apply_2d_transformation(res_m_slice, transfo=self.R_target_to_M[i_slice].inverse)[0])\n return Image(np.asarray(moved_res).astype('uint8'))", "metadata": "root.TargetSegmentationGroupwise.target_groupwise_registration", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1932 }, { "content": " def select_k_slices(self, beta):\n \"\"\"\n Select the K dictionary slices most similar to the target slice\n\n :param beta: Dictionary similarities\n\n :return selected: numpy array of segmentation of the selected dictionary slices\n \"\"\"\n\n kept_slice_index = []\n\n if isinstance(beta[0], (list, np.ndarray)):\n for beta_slice in beta:\n selected_index = beta_slice > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices.append(segmentation_slices[selected_index])\n kept_slice_index.append(selected_index)\n\n else:\n kept_slice_index = beta > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices = segmentation_slices[selected_index]\n\n return np.asarray(kept_slice_index)", "metadata": "root.TargetSegmentationGroupwise.select_k_slices", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1996 }, { "content": " def label_fusion(self, selected_index):\n \"\"\"\n Compute the resulting segmentation by label fusion of the segmentation of the selected dictionary slices\n\n :param selected_index: array of indexes (as a boolean array) of the selected dictionary slices\n\n :return res_seg_model_space: Image of the resulting segmentation for the target image (in the model space)\n \"\"\"\n segmentation_slices = np.asarray([dic_slice.seg_M for dic_slice in self.model.dictionary.slices])\n\n res_seg_model_space = []\n\n # if isinstance(selected_slices[0][0][0], (list, np.ndarray)):\n # if len(selected_slices[0].shape) == 3:\n if isinstance(selected_index[0], (list, np.ndarray)):\n\n for selected_ind_by_slice in selected_index: # selected_slices:\n slice_seg = compute_majority_vote_mean_seg(segmentation_slices[selected_ind_by_slice], threshold=0.3)\n res_seg_model_space.append(slice_seg)\n # res_seg_model_space = map(compute_majority_vote_mean_seg, selected_slices)\n\n else:\n # res_seg_model_space = compute_majority_vote_mean_seg(selected_slices)\n res_seg_model_space = compute_majority_vote_mean_seg(segmentation_slices[selected_index], threshold=0.3)\n\n res_seg_model_space = np.asarray(res_seg_model_space)\n # save_image(res_seg_model_space, 'res_GM_seg_model_space')\n\n return Image(param=res_seg_model_space)", "metadata": "root.TargetSegmentationGroupwise.label_fusion", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 2027 }, { "content": " def plot_projected_dic(self, nb_modes=3):\n \"\"\"\n plot the pca first modes and the target projection if target is provided.\n\n on a second plot, highlight the selected dictionary slices for one target slice in particular\n\n :param nb_modes:\n :return:\n \"\"\"\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()\n\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target, to_highlight=(6, self.selected_k_slices[6])) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()\n print self.selected_k_slices[6]", "metadata": "root.TargetSegmentationGroupwise.plot_projected_dic", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 2058 }, { "content": "class GMsegSupervisedMethod():\n \"\"\"\n Gray matter segmentation supervised method:\n\n Load a dictionary (training data set), compute or load a model from this dictionary\nsct_Image\n Load a target image to segment and do the segmentation using the model\n \"\"\"\n", "metadata": "root.GMsegSupervisedMethod", "header": "['module', '___EOS___']", "index": 2077 }, { "content": " def __init__(self, target_fname, gm_seg_param=None):\n\n self.dictionary = ModelDictionaryBySlice(dic_param=gm_seg_param)\n\n sct.printv('\\nBuilding the appearance model...', verbose=gm_seg_param.verbose, type='normal')\n # build the appearance model\n self.model = Model(model_param=gm_seg_param, dictionary=self.dictionary, k=0.8)\n\n sct.printv('\\nConstructing target image ...', verbose=gm_seg_param.verbose, type='normal')\n # construct target image\n self.target_image = Image(target_fname)\n\n tau = None # 0.000765625 # 0.00025 # 0.000982421875 # 0.00090625 # None\n\n if gm_seg_param.todo_model == 'load':\n fic = open(self.model.dictionary.model_dic_name + '/tau.txt', 'r')\n tau = float(fic.read())\n fic.close()\n\n # build a target segmentation\n levels_im = None\n if gm_seg_param.level_fname is not None:\n if isinstance(gm_seg_param.level_fname, str):\n # in this case the level is a string and not an image\n levels_im = gm_seg_param.level_fname\n else:\n levels_im = Image(gm_seg_param.level_fname)\n if gm_seg_param.target_reg == 'pairwise':\n if levels_im is not None:\n self.target_seg_methods = TargetSegmentationPairwise(self.model, target_image=self.target_image, levels_image=levels_im, tau=tau)\n else:\n self.target_seg_methods = TargetSegmentationPairwise(self.model, target_image=self.target_image, tau=tau)\n\n elif gm_seg_param.target_reg == 'groupwise':\n self.target_seg_methods = TargetSegmentationGroupwise(self.model, target_image=self.target_image, tau=tau)\n\n suffix = '_'\n suffix += gm_seg_param.target_reg\n suffix += gm_seg_param.seg_type\n for transfo in self.dictionary.coregistration_transfos:\n suffix += '_' + transfo\n if levels_im is not None:\n suffix += '_with_levels'\n else:\n suffix += '_no_levels'\n\n # save the result gray matter segmentation\n # self.res_GM_seg = self.target_seg_methods.target_GM_seg\n if gm_seg_param.seg_type == 'wm':\n if len(self.target_seg_methods.target) == 1:\n self.res = Image(param=np.asarray(self.target_seg_methods.target[0].wm_seg))\n else:\n self.res = Image(param=np.asarray([target_slice.wm_seg for target_slice in self.target_seg_methods.target]))\n else:\n if len(self.target_seg_methods.target) == 1:\n self.res = Image(param=np.asarray(self.target_seg_methods.target[0].gm_seg))\n else:\n self.res = Image(param=np.asarray([target_slice.gm_seg for target_slice in self.target_seg_methods.target]))\n\n name_res = sct.extract_fname(target_fname)[1] + '_graymatterseg' + suffix # TODO: remove suffix\n self.res.file_name = name_res\n self.res.ext = '.nii.gz'\n self.res.save()\n\n '''\n save_image(self.res_GM_seg.data, name_res)\n '''\n # inverse_wmseg_to_gmseg(self.res_GM_seg, self.target_image, name_res)\n\n sct.printv('Done! \\nTo see the result, type :')\n sct.printv('fslview ' + target_fname + ' ' + name_res + '.nii.gz -l Red -t 0.4 &', gm_seg_param.verbose, 'info')", "metadata": "root.GMsegSupervisedMethod.__init__", "header": "['class', 'GMsegSupervisedMethod', '(', ')', ':', '___EOS___']", "index": 2085 }, { "content": " def show(self):\n\n sct.printv('\\nShowing the pca modes ...')\n self.model.pca.show_all_modes()\n\n sct.printv('\\nPloting Omega ...')\n self.target_seg_methods.plot_projected_dic(nb_modes=3)\n\n sct.printv('\\nShowing PCA mode graphs ...')\n self.model.pca.show_mode_variation()\n print 'J :', self.dictionary.J\n\n '''\n sct.printv('\\nShowing the projected target ...')\n 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Unused import	joonty/vim-do/autoload/python/buffer.py	[ { "content": "import vim\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class VimBuffer:\n\n\n\n\n\n\n\n", "metadata": "root.VimBuffer", "header": "['module', '___EOS___']", "index": 2 }, { "content": " def __init__(self, buffer):\n self._buffer = buffer", "metadata": "root.VimBuffer.__init__", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 3 }, { "content": " def replace(self, content):\n self._buffer[:] = content", "metadata": "root.VimBuffer.replace", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 6 }, { "content": " def line(self, number):\n return self._buffer[number]", "metadata": "root.VimBuffer.line", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 9 }, { "content": " def write(self, msg, overwrite):\n last_line = len(self._buffer)\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n\n if len(to_write) == 1 and to_write[0] == \"\":\n return (last_line, last_line)\n\n if overwrite or self.is_empty():\n self._buffer[:] = to_write\n else:\n self._buffer.append(to_write)\n\n return (last_line, last_line + len(to_write))", "metadata": "root.VimBuffer.write", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 12 }, { "content": " def overwrite(self, msg, lineno, allowEmpty):\n \"\"\" insert into current position in buffer\"\"\"\n if not msg and allowEmpty == False:\n return\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n\n lstart = lineno - 1\n lend = lstart + len(to_write)\n self._buffer[lstart:lend] = to_write\n\n return (lstart, lend)", "metadata": "root.VimBuffer.overwrite", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 30 }, { "content": " def delete(self, start_line, end_line = None):\n try:\n if not end_line:\n end_line = start_line + 1\n self._buffer[end_line]\n remaining_buffer = self._buffer[end_line:]\n del self._buffer[start_line:]\n self._buffer.append(remaining_buffer)\n except IndexError:\n del self._buffer[start_line:]", "metadata": "root.VimBuffer.delete", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 46 }, { "content": " def contents(self):\n return self._buffer[:]", "metadata": "root.VimBuffer.contents", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 57 }, { "content": " def clean(self):\n self._buffer[:] = []", "metadata": "root.VimBuffer.clean", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 60 }, { "content": " def is_empty(self):\n if len(self._buffer) == 1 and len(self._buffer[0]) == 0:\n return True\n else:\n return False", "metadata": "root.VimBuffer.is_empty", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 63 }, { "content": "class HiddenBuffer:\n\n\n\n\n\n\n\n", "metadata": "root.HiddenBuffer", "header": "['module', '___EOS___']", "index": 69 }, { "content": " def __init__(self, buffer = []):\n self._buffer = buffer[:]", "metadata": "root.HiddenBuffer.__init__", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 70 }, { "content": " def line(self, number):\n return self._buffer[number]", "metadata": "root.HiddenBuffer.line", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 73 }, { "content": " def replace(self, contents):\n self._buffer[:] = contents[:]", "metadata": "root.HiddenBuffer.replace", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 76 }, { "content": " def write(self, msg, overwrite):\n last_line = len(self._buffer)\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n\n if len(to_write) == 1 and to_write[0] == \"\":\n return (last_line, last_line)\n\n to_write = str(msg).split('\\n')\n\n if overwrite or self.is_empty():\n self._buffer[:] = to_write\n else:\n self._buffer.extend(to_write)\n\n return (last_line, last_line + len(to_write))", "metadata": "root.HiddenBuffer.write", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 79 }, { "content": " def overwrite(self, msg, lineno, allowEmpty):\n \"\"\" insert into current position in buffer\"\"\"\n if not msg and allowEmpty == False:\n return\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n last_line = len(self._buffer)\n\n lstart = lineno - 1\n lend = lstart + len(to_write)\n self._buffer[lstart:lend] = to_write\n\n return (lstart, lend)", "metadata": "root.HiddenBuffer.overwrite", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 99 }, { "content": " def delete(self, start_line, end_line = None):\n try:\n if not end_line:\n end_line = start_line + 1\n self._buffer[start_line:end_line] = []\n except IndexError:\n del self._buffer[start_line:]", "metadata": "root.HiddenBuffer.delete", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 116 }, { "content": " def clean(self):\n self._buffer[:] = []", "metadata": "root.HiddenBuffer.clean", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 124 }, { "content": " def contents(self):\n return self._buffer[:]", "metadata": "root.HiddenBuffer.contents", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 127 }, { "content": " def is_empty(self):\n return not self._buffer", "metadata": "root.HiddenBuffer.is_empty", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 130 } ]	[ { "span": "import vim", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 10 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "import_", "vim_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "class_", "Vi", "m", "Buffer_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", 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Except block handles 'BaseException'	kergoth/git-origin/git-python/lib/git/tree.py	[ { "content": " @staticmethod\n def content_from_string(repo, text):\n \"\"\"\n Parse a content item and create the appropriate object\n\n ``repo``\n is the Repo\n\n ``text``\n is the single line containing the items data in `git ls-tree` format\n\n Returns\n ``git.Blob`` or ``git.Tree``\n \"\"\"\n try:\n mode, typ, id, name = text.expandtabs(1).split(\" \", 3)\n except:\n return None\n\n if typ == \"tree\":\n return Tree(repo, id=id, mode=mode, name=name)\n elif typ == \"blob\":\n return blob.Blob(repo, id=id, mode=mode, name=name)\n elif typ == \"commit\":\n return None\n else:\n raise(TypeError, \"Invalid type: %s\" % typ)", "metadata": "root.Tree.content_from_string", "header": "['class', 'Tree', '(', 'LazyMixin', ')', ':', '___EOS___']", "index": 32 } ]	[ { "span": "except:", "start_line": 48, "start_column": 8, "end_line": 48, "end_column": 15 } ]	[]	1	true	[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "class_", "Tree_", "(_", "La", "zy", "Mixin_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "@_", "staticmethod_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "content", "\\u", "from", "\\u", "string_", "(_", "repo_", ",_", "text_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "Pars", "e", " ", "a", " ", "content", " ", "item", " ", "and", " ", "create", " ", "the", " ", "appropr", "iate", " ", "object", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", "``", "repo", "``", "\\", "10", ";", " ", " ", " ", " ", "is", " ", "the", " ", "Rep", "o", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", " ", "``", "text", "``", "\\", "10", ";", " ", " ", " ", " ", "is", " ", "the", " ", "single", " ", "line", " ", "contain", "ing", " ", "the", " ", "items", " ", "data", " ", "in", " ", "`", "git", " ", "ls", "-", "tree", "`", " ", "format", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", "Return", "s", "\\", "10", ";", " ", " ", " ", " ", "``", "git", ".", "Blo", "b", "``", " ", "or", " ", "``", "git", ".", "Tree", "``", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "mode_", ",_", "typ_", ",_", "id_", ",_", "name_", "=_", "text_", "._", "expand", "tabs_", "(_", "1_", ")_", "._", "split_", "(_", "\"", " ", "\"_", ",_", "3_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "typ_", "==_", "\"", "tree", "\"_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "Tree_", "(_", "repo_", ",_", "id_", "=_", "id_", ",_", "mode_", "=_", "mode_", ",_", "name_", "=_", "name_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "typ_", "==_", "\"", "blob", "\"_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "blob_", "._", "Blob_", "(_", "repo_", ",_", "id_", "=_", "id_", ",_", "mode_", "=_", "mode_", ",_", "name_", "=_", "name_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "typ_", "==_", "\"", "commit", "\"_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "raise_", "(_", "Type", "Error_", ",_", "\"", "Inva", "lid", " ", "type", ":", " ", "%", "s", "\"_", "%_", "typ_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Testing equality to None	kdart/pycopia/core/pycopia/fsm.py	[ { "content": " def set_default_transition(self, action, next_state):\n '''This sets the default transition.\n If the FSM cannot match the pair (input_symbol, current_state)\n in the transition table then this is the transition that\n will be returned. This is useful for catching errors and undefined states.\n The default transition can be removed by calling\n `add_default_transition (None, None)`.\n If the default is not set and the FSM cannot match\n the input_symbol and current_state then it will\n raise an exception (see process()).\n '''\n if action == None and next_state == None:\n self.default_transition = None\n else:\n self.default_transition = (action, next_state)", "metadata": "root.FSM.set_default_transition", "header": "['class', 'FSM', '(', 'object', ')', ':', '___EOS___']", "index": 92 } ]	[ { "span": "action == None ", "start_line": 103, "start_column": 11, "end_line": 103, "end_column": 25 }, { "span": "next_state == None:", "start_line": 103, "start_column": 30, "end_line": 103, "end_column": 48 } ]	[]	1	true	[ "[CLS]_", "Test", "ing_", "equality", "_", "to_", "None_", "[SEP]_", "class_", "FSM", "_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "set\\u", "default", "\\u", "transition_", "(_", "self_", ",_", "action_", ",_", "next", "\\u", "state_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "'''", "Thi", "s", " ", "sets", " ", "the", " ", "default", " ", "transiti", "on", ".", "\\", "10", ";", " ", " ", " ", " ", "If", " ", "the", " ", "FSM", " ", "cann", "ot", " ", "match", " ", "the", " ", "pair", " ", "(", "input", "\\u", "symbol", ",", " ", "current", "\\u", "state", ")", "\\", "10", ";", " ", " ", " ", " ", "in", " ", "the", " ", "transiti", "on", " ", "table", " ", "then", " ", "this", " ", "is", " ", "the", " ", "transiti", "on", " ", "tha", "t", "\\", "10", ";", " ", " ", " ", " ", "will", " ", "be", " ", "return", "ed", ".", " ", "Thi", "s", " ", "is", " ", "usef", "ul", " ", "for", " ", "catch", "ing", " ", "error", "s", " ", "and", " ", "undefined", " ", "state", "s", ".", "\\", "10", ";", " ", " ", " ", " ", "The", " ", "default", " ", "transiti", "on", " ", "can", " ", "be", " ", "remove", "d", " ", "by", " ", "calling", "\\", "10", ";", " ", " ", " ", " ", "`", "add", "\\u", "default", "\\u", "transiti", "on", " ", "(", "Non", "e", ",", " ", "Non", "e", ")`", ".", "\\", "10", ";", " ", " ", " ", " ", "If", " ", "the", " ", "default", " ", "is", " ", "not", " ", "set", " ", "and", " ", "the", " ", "FSM", " ", "cann", "ot", " ", "match", "\\", "10", ";", " ", " ", " ", " ", "the", " ", "input", "\\u", "symbol", " ", "and", " ", "current", "\\u", "state", " ", "then", " ", "it", " ", "will", "\\", "10", ";", " ", " ", " ", " ", "raise", " ", "an", " ", "exception", " ", "(", "see", " ", "process", "())", ".", "\\", "10", ";", " ", " ", " ", " ", "'''_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "action_", "==_", "None_", "and_", "next", "\\u", "state_", "==_", "None_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "default", "\\u", "transition_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "default", "\\u", "transition_", "=_", "(_", "action_", ",_", "next", "\\u", "state_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 0, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	godaddy/Thespian/thespian/test/testActors.py	[ { "content": "\"\"\"This test creates two top level actors and one sub-actor and\n verifies that the actors can exchange sequences of messages.\"\"\"\n\nimport unittest\nimport time\nimport thespian.test.helpers\nfrom thespian.actors import \nfrom thespian.test import ActorSystemTestCase\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class rosaline(Actor):\n name = 'Rosaline'", "metadata": "root.rosaline", "header": "['module', '___EOS___']", "index": 9 }, { "content": "class Romeo(Actor):", "metadata": "root.Romeo", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def receiveMessage(self, msg, sender):\n if isinstance(msg, JulietAppears):\n self.send(msg.juliet, \"But, soft! what light through yonder window breaks?\")\n elif isinstance(msg, ActorExitRequest):\n pass # nothing special, just die\n elif msg == 'Ay me!':\n self.send(sender, 'She speaks!')\n elif msg == 'O Romeo, Romeo! wherefore art thou Romeo?':\n self.send(sender, 'Shall I hear more, or shall I speak at this?')\n elif 'rose' in msg:\n pass # wait for it\n elif 'sweet' in msg:\n self.send(sender, 'Like softest music to attending ears!')\n elif 'hello' in msg:\n print('Hello from %s'%(str(self)))\n elif 'who_are_you' == msg:\n self.send(sender, self.myAddress)\n # otherwise sit and swoon", "metadata": "root.Romeo.receiveMessage", "header": "['class', 'Romeo', '(', 'Actor', ')', ':', '___EOS___']", "index": 13 }, { "content": "class Capulet(Actor):", "metadata": "root.Capulet", "header": "['module', '___EOS___']", "index": 33 }, { "content": " def receiveMessage(self, msg, sender):\n if msg == \"has a daughter?\":\n self.send(sender, self.createActor(Juliet))", "metadata": "root.Capulet.receiveMessage", "header": "['class', 'Capulet', '(', 'Actor', ')', ':', '___EOS___']", "index": 34 }, { "content": "class Juliet(Actor):", "metadata": "root.Juliet", "header": "['module', '___EOS___']", "index": 39 }, { "content": " def __init__(self, args, *kw):\n self.nurse = None\n self.recalled = False\n super(Juliet, self).__init__(args, *kw)", "metadata": "root.Juliet.__init__", "header": "['class', 'Juliet', '(', 'Actor', ')', ':', '___EOS___']", "index": 40 }, { "content": " def receiveMessage(self, msg, sender):\n if isinstance(msg, ActorExitRequest):\n pass # nothing special, just die\n elif \"what light\" in msg:\n self.send(sender, 'Ay me!')\n elif msg == 'She speaks!':\n self.send(sender, 'O Romeo, Romeo! wherefore art thou Romeo?')\n elif msg == 'Shall I hear more, or shall I speak at this?':\n self.send(sender, \"What's in a name? That which we call a rose\")\n self.send(sender, \"By any other name would smell as sweet\")\n elif msg == 'Like softest music to attending ears!':\n if self.nurse:\n self.send(self.nurse, 'Anon, good nurse!')\n else:\n self.recalled = True\n elif msg == 'Mistress!':\n self.nurse = sender\n if self.recalled:\n self.send(self.nurse, 'Anon, good nurse!')\n elif 'who_are_you' == msg:\n self.send(sender, self.myAddress)", "metadata": "root.Juliet.receiveMessage", "header": "['class', 'Juliet', '(', 'Actor', ')', ':', '___EOS___']", "index": 44 }, { "content": "class Nurse(Actor):", "metadata": "root.Nurse", "header": "['module', '___EOS___']", "index": 67 }, { "content": " def __init__(self, args, *kw):\n self.heardItAll = False\n super(Nurse, self).__init__(args, **kw)", "metadata": "root.Nurse.__init__", "header": "['class', 'Nurse', '(', 'Actor', ')', ':', '___EOS___']", "index": 68 }, { "content": " def receiveMessage(self, msg, sender):\n if type(msg) == type((1,2)) and msg[0] == 'begin':\n self.send(msg[1], JulietAppears(msg[2]))\n self.send(msg[2], 'Mistress!')\n elif msg == 'Anon, good nurse!':\n self.heardItAll = True\n elif msg == 'done?':\n self.send(sender, 'Fini' if self.heardItAll else 'not yet')", "metadata": "root.Nurse.receiveMessage", "header": "['class', 'Nurse', '(', 'Actor', ')', ':', '___EOS___']", "index": 71 }, { "content": "class JulietAppears:\n stage = 'Right'", "metadata": "root.JulietAppears", "header": "['module', '___EOS___']", "index": 81 }, { "content": " def __init__(self, julietAddr):\n self.juliet = julietAddr", "metadata": "root.JulietAppears.__init__", "header": "['class', 'JulietAppears', ':', '___EOS___']", "index": 83 }, { "content": "class TestASimpleSystem(ActorSystemTestCase):\n testbase='Simple'\n scope='func'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.TestASimpleSystem", "header": "['module', '___EOS___']", "index": 87 }, { "content": " def test01_ActorSystemStartupShutdown(self):\n rosalineA = ActorSystem().createActor(rosaline)\n # just finish, make sure no exception is thrown.", "metadata": "root.TestASimpleSystem.test01_ActorSystemStartupShutdown", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 91 }, { "content": " def test01_1_ActorSystemMultipleShutdown(self):\n rosalineA = ActorSystem().createActor(rosaline)\n ActorSystem().shutdown()\n ActorSystem().shutdown()", "metadata": "root.TestASimpleSystem.test01_1_ActorSystemMultipleShutdown", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 95 }, { "content": " def test02_PrimaryActorCreation(self):\n romeo = ActorSystem().createActor(Romeo)\n juliet = ActorSystem().createActor(Juliet)\n self.assertNotEqual(romeo, juliet)", "metadata": "root.TestASimpleSystem.test02_PrimaryActorCreation", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 100 }, { "content": " def test03_CreateActorUniqueAddress(self):\n romeo = ActorSystem().createActor(Romeo)\n juliet = ActorSystem().createActor(Juliet)\n self.assertNotEqual(romeo, juliet)\n romeo2 = ActorSystem().createActor(Romeo)\n self.assertNotEqual(romeo, romeo2)", "metadata": "root.TestASimpleSystem.test03_CreateActorUniqueAddress", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 105 }, { "content": " def NOtest04_PossibleActorSystemResourceExhaustion(self):\n asys = ActorSystem()\n try:\n addresses = [asys.createActor(Juliet) for n in range(10000)]\n except OSError as err:\n import errno\n if err.errno == errno.EGAIN:\n pass\n else:\n raise", "metadata": "root.TestASimpleSystem.NOtest04_PossibleActorSystemResourceExhaustion", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 112 }, { "content": " def test05_ManyActorsUniqueAddress(self):\n asys = ActorSystem()\n addresses = [asys.createActor(Juliet) for n in range(100)]\n uniqueAddresses = set(addresses)\n if len(addresses) != len(uniqueAddresses):\n duplicates = [A for A in uniqueAddresses if len([X for X in addresses if X == A]) > 1]\n print('Duplicates: %s'%map(str, duplicates))\n if duplicates:\n for each in duplicates:\n print('... %s at: %s'%(str(each), str([N for N,A in enumerate(addresses) if A == each])))\n print('Note: if this is a UDPTransport test, be advised that Linux occasionally does seem to assign the same UDP port multiple times. Linux bug?')\n self.assertEqual(len(addresses), len(uniqueAddresses))", "metadata": "root.TestASimpleSystem.test05_ManyActorsUniqueAddress", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 124 }, { "content": " def test06_ManyActorsValidAddresses(self):\n import string\n addresses = [ActorSystem().createActor(Juliet) for n in range(100)]\n for addr in addresses:\n invchar = ''.join([c for c in str(addr)\n if c not in string.ascii_letters + string.digits + \"-~/():., '\|\"])\n self.assertEqual(str(addr), str(addr) + invchar) # invchar should be blank", "metadata": "root.TestASimpleSystem.test06_ManyActorsValidAddresses", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 137 }, { "content": " def test07_SingleNonListeningActorTell(self):\n rosalineA = ActorSystem().createActor(rosaline)\n # rosaline does not override the receiveMessage method, so the\n # Actor default method will throw an exception. This will\n # Kill the rosaline Actor. It's a top level Actor, so it will\n # not be restarted. This will cause the 'hello' message to be\n # delivered to the DeadLetterBox. Verify that no exception\n # makes its way out of the ActorSystem here.\n ActorSystem().tell(rosalineA, 'hello')\n self.assertTrue(True)", "metadata": "root.TestASimpleSystem.test07_SingleNonListeningActorTell", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 145 }, { "content": " def test08_SingleActorTell(self):\n romeoA = ActorSystem().createActor(Romeo)\n ActorSystem().tell(romeoA, 'hello')\n # Nothing much happens, Romeo is smitten and has no time for trivialities, but\n # he will try to generate str() of himself.", "metadata": "root.TestASimpleSystem.test08_SingleActorTell", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 156 }, { "content": " def test09_SingleActorAsk(self):\n romeoA = ActorSystem().createActor(Romeo)\n resp = ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?')\n self.assertEqual(resp, 'Shall I hear more, or shall I speak at this?')", "metadata": "root.TestASimpleSystem.test09_SingleActorAsk", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 162 }, { "content": " def test10_ActorAskWithNoResponse(self):\n romeoA = ActorSystem().createActor(Romeo)\n # This test is possibly unique to the simpleSystemBase, which\n # will run an process all messages on an ask (or tell) call.\n # Properly there is no way to determine if an answer is\n # forthcoming from an asynchronous system, so all this can do\n # is assert that there is no response within a particular time\n # period. At this point, timing is not supported, so this\n # test is underspecified and assumptive.\n resp = ActorSystem().ask(romeoA, \"What's in a name? That which we call a rose\", 1.5)\n self.assertEqual(resp, None)\n # Now verify that the Actor and system are still alive and operating normally.\n resp = ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?')\n self.assertEqual(resp, 'Shall I hear more, or shall I speak at this?')", "metadata": "root.TestASimpleSystem.test10_ActorAskWithNoResponse", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 167 }, { "content": " def test11_SingleActorAskMultipleTimes(self):\n romeoA = ActorSystem().createActor(Romeo)\n self.assertEqual(ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n self.assertEqual(ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n self.assertEqual(ActorSystem().ask(romeoA, 'Ay me!'), 'She speaks!')\n self.assertEqual(ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')", "metadata": "root.TestASimpleSystem.test11_SingleActorAskMultipleTimes", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 182 }, { "content": " def test12_MultipleActorsAskMultipleTimes(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n self.assertEqual(play.ask(romeo, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n juliet = play.createActor(Juliet)\n self.assertEqual(play.ask(romeo, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n self.assertEqual(play.ask(romeo, 'Ay me!'), 'She speaks!')\n self.assertEqual(play.ask(juliet, 'She speaks!'),\n 'O Romeo, Romeo! wherefore art thou Romeo?')\n self.assertEqual(play.ask(romeo, 'Ay me!'), 'She speaks!')\n self.assertEqual(play.ask(juliet, \"Do you know what light that is?\"), 'Ay me!')", "metadata": "root.TestASimpleSystem.test12_MultipleActorsAskMultipleTimes", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 192 }, { "content": " def test13_SubActorCreation(self):\n capulet = ActorSystem().createActor(Capulet)\n juliet = ActorSystem().ask(capulet, 'has a daughter?', 2.5)\n print ('Juliet is: %s'%str(juliet))\n self.assertIsNot(juliet, None)\n if juliet:\n self.assertEqual(ActorSystem().ask(juliet, 'what light?'), 'Ay me!', 0.75)\n juliet2 = ActorSystem().ask(capulet, 'has a daughter?')\n self.assertIsNot(juliet2, None)\n if juliet2:\n self.assertEqual(ActorSystem().ask(juliet2, 'what light?'), 'Ay me!', 0.5)\n self.assertEqual(ActorSystem().ask(juliet, 'what light?'), 'Ay me!', 0.5)", "metadata": "root.TestASimpleSystem.test13_SubActorCreation", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 206 }, { "content": " def test14_EntireActWithActorStart(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n juliet = play.createActor(Juliet)\n nurse = play.createActor(Nurse)\n self.assertEqual(play.ask(nurse, 'done?'), 'not yet')\n play.tell(nurse, ('begin', romeo, juliet))\n\n for X in range(50):\n if play.ask(nurse, 'done?') == 'Fini':\n break\n time.sleep(0.01) # Allow some time for the entire act\n self.assertEqual(play.ask(nurse, 'done?'), 'Fini')", "metadata": "root.TestASimpleSystem.test14_EntireActWithActorStart", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 219 }, { "content": " def test15_IncompleteActMissingActor(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n juliet = play.createActor(Juliet)\n # no nurse actor created\n play.tell(romeo, JulietAppears(juliet))\n # No error should occur here when Juliet reaches the end and\n # doesn't have a nurse to tell.\n\n time.sleep(0.5) # Allow some time for the entire act\n\n # Now create the nurse and tell her to talk to romeo and\n # juliet, which should cause completion\n nurse = play.createActor(Nurse)\n self.assertEqual(play.ask(nurse, 'done?'), 'not yet')\n play.tell(nurse, ('begin', romeo, juliet))\n\n for X in range(50):\n if play.ask(nurse, 'done?') == 'Fini':\n break\n time.sleep(0.01) # Allow some time for the entire act\n self.assertEqual(play.ask(nurse, 'done?'), 'Fini')", "metadata": "root.TestASimpleSystem.test15_IncompleteActMissingActor", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 233 }, { "content": " def test16_ActorProperties(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n juliet = play.createActor(Juliet)\n\n self.assertIsNotNone(play.ask(romeo, 'who_are_you', 0.25))\n self.assertIsNotNone(play.ask(juliet, 'who_are_you', 0.25))\n self.assertNotEqual(play.ask(romeo, 'who_are_you', 0.25),\n play.ask(juliet, 'who_are_you', 0.25))", "metadata": "root.TestASimpleSystem.test16_ActorProperties", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 256 }, { "content": "class TestMultiprocUDPSystem(TestASimpleSystem):\n testbase='MultiprocUDP'", "metadata": "root.TestMultiprocUDPSystem", "header": "['module', '___EOS___']", "index": 267 }, { "content": " def setUp(self):\n self.setSystemBase('multiprocUDPBase')\n super(TestMultiprocUDPSystem, self).setUp()", "metadata": "root.TestMultiprocUDPSystem.setUp", "header": "['class', 'TestMultiprocUDPSystem', '(', 'TestASimpleSystem', ')', ':', '___EOS___']", "index": 269 }, { "content": "class TestMultiprocTCPSystem(TestASimpleSystem):\n testbase='MultiprocTCP'", "metadata": "root.TestMultiprocTCPSystem", "header": "['module', '___EOS___']", "index": 273 }, { "content": " def setUp(self):\n self.setSystemBase('multiprocTCPBase')\n super(TestMultiprocTCPSystem, self).setUp()", "metadata": "root.TestMultiprocTCPSystem.setUp", "header": "['class', 'TestMultiprocTCPSystem', '(', 'TestASimpleSystem', ')', ':', '___EOS___']", "index": 275 }, { "content": "class TestMultiprocQueueSystem(TestASimpleSystem):\n testbase='MultiprocQueue'", "metadata": "root.TestMultiprocQueueSystem", "header": "['module', '___EOS___']", "index": 279 }, { "content": " def setUp(self):\n self.setSystemBase('multiprocQueueBase')\n super(TestMultiprocQueueSystem, self).setUp()", "metadata": "root.TestMultiprocQueueSystem.setUp", "header": "['class', 'TestMultiprocQueueSystem', '(', 'TestASimpleSystem', ')', ':', '___EOS___']", "index": 281 } ]	[ { "span": "import unittest", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 15 }, { "span": "import thespian.test.helpers", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 28 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\"\"\"", "Thi", "s", " ", "test", " ", "create", "s", " ", "two", " ", "top", " ", "level", " ", "actors", " ", "and", " ", "one", " ", "sub", "-", "actor", " ", "and", "\\", "10", ";", " ", " ", " ", "verifie", "s", " ", "tha", "t", " ", "the", " ", "actors", " ", "can", " ", "exchange", " ", "sequence", "s", " ", "of", " ", "message", "s", ".\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "unittest_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "time_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "thes", "pian", "_", "._", "test_", "._", "helpers_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "thes", "pian", "_", "._", "actors_", "import_", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "thes", "pian", "_", "._", "test_", "import_", "Act", "or", "System", "Test", "Case_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "class_", "ros", "alin", "e_", "(_", "Actor_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "name_", "=_", "'", "Ros", "alin", "e", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "class_", "Rom", "eo_", "(_", "Actor_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Rom", "eo_", "(_", "Actor_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", 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Unused import	h0ke/pynt/pynt/pynt.py	[ { "content": "\"\"\"\n Pynt is a Python client that wraps the Open Beer Database API.\n\n Questions, comments? [email protected]\n\"\"\"\n\n__author__ = \"Matthew Hokanson <[email protected]>\"\n__version__ = \"0.2.0\"\n\n\nfrom beer import Beer\nfrom brewery import Brewery\nfrom request import Request\nfrom settings import Settings\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "from beer import Beer", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 21 }, { "span": "from brewery import Brewery", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 27 }, { "span": "from request import Request", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 27 }, { "span": "from settings import Settings", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 29 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "Py", "nt", " ", "is", " ", "a", " ", "Pyth", "on", " ", "client", " ", "tha", "t", " ", "wrap", "s", " ", "the", " ", "Open", " ", "Bee", "r", " ", "Databa", "se", " ", "API", ".", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", "Questions", ",", " ", "comment", "s", "?", " ", "m", "@", "h", "0", "ke", ".", "com", "\\", "10", ";\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u", "author\\u\\u_", "=_", "\"", "Matt", "hew", " ", "Ho", "kan", "son", " ", "<", "m", "@", "h", "0", "ke", ".", "com", ">\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u", "version\\u\\u_", "=_", "\"", "0.", "2.0", "\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "beer", "_", "import_", "Bee", "r_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "brew", "ery", "_", "import_", "Bre", "wer", "y_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "request_", "import_", "Request_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "settings_", "import_", "Settings_" ]	[ 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 2, 0, 1, 1, 1 ]
Unused import	dimagi/commcare-hq/corehq/apps/app_manager/fields.py	[ { "content": "import logging\nfrom django.conf import settings\nfrom django.core.urlresolvers import reverse\nfrom django.http import Http404\nimport collections\nimport itertools\nfrom django import forms\nfrom django.utils.translation import ugettext as _\nfrom corehq.apps.app_manager.analytics import get_exports_by_application\nfrom corehq.apps.app_manager.dbaccessors import get_apps_in_domain, get_app\nfrom corehq.apps.app_manager.models import Application\nfrom corehq.form_processor.interfaces.dbaccessors import CaseAccessors\nfrom couchforms.analytics import get_exports_by_form\nfrom couchforms.models import XFormInstance\nfrom dimagi.utils.decorators.memoized import memoized\n\n\nApplicationDataSource = collections.namedtuple('ApplicationDataSource', ['application', 'source_type', 'source'])\nRMIDataChoice = collections.namedtuple('RMIDataChoice', ['id', 'text', 'data'])\nAppFormRMIResponse = collections.namedtuple('AppFormRMIResponse', [\n 'app_types', 'apps_by_type', 'modules_by_app',\n 'forms_by_app_by_module', 'placeholders'\n])\nAppFormRMIPlaceholder = collections.namedtuple('AppFormRMIPlaceholder', [\n 'application', 'module', 'form'\n])\nAppCaseRMIResponse = collections.namedtuple('AppCaseRMIResponse', [\n 'app_types', 'apps_by_type', 'case_types_by_app', 'placeholders'\n])\nAppCaseRMIPlaceholder = collections.namedtuple('AppCaseRMIPlaceholder', [\n 'application', 'case_type'\n])\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ApplicationDataSourceUIHelper(object):\n \"\"\"\n A helper object that can be used in forms that allows you to select a data source from an application.\n Data sources can be forms and cases.\n\n To use it you must do the following:\n\n - Add this helper as a member variable of your form\n - Call helper.boostrap() with the domain.\n - Add helper.get_fields() to the form fields.\n - Add the following knockout bindings to your template:\n\n $(function () {\n $(\"#FORM\").koApplyBindings({\n application: ko.observable(\"\"),\n sourceType: ko.observable(\"\"),\n sourcesMap: {{ sources_map\|JSON }}\n });\n });\n\n Where FORM is a selector for your form and sources_map is the .all_sources property from this object\n (which gets set after bootstrap).\n\n See usages for examples.\n \"\"\"\n\n\n\n", "metadata": "root.ApplicationDataSourceUIHelper", "header": "['module', '___EOS___']", "index": 34 }, { "content": " def __init__(self, enable_cases=True, enable_forms=True):\n self.all_sources = {}\n self.enable_cases = enable_cases\n self.enable_forms = enable_forms\n source_choices = []\n if enable_cases:\n source_choices.append((\"case\", _(\"Case\")))\n if enable_forms:\n source_choices.append((\"form\", _(\"Form\")))\n\n self.application_field = forms.ChoiceField(label=_('Application'), widget=forms.Select())\n if enable_cases and enable_forms:\n self.source_type_field = forms.ChoiceField(label=_('Type of Data'),\n choices=source_choices,\n widget=forms.Select(choices=source_choices))\n else:\n self.source_type_field = forms.ChoiceField(choices=source_choices,\n widget=forms.HiddenInput(),\n initial=source_choices[0][0])\n\n self.source_field = forms.ChoiceField(label=_('Data Source'), widget=forms.Select())", "metadata": "root.ApplicationDataSourceUIHelper.__init__", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 60 }, { "content": " def bootstrap(self, domain):\n self.all_sources = get_app_sources(domain)\n self.application_field.choices = sorted(\n [(app_id, source['name']) for app_id, source in self.all_sources.items()],\n key=lambda id_name_tuple: (id_name_tuple[1] or '').lower()\n )\n self.source_field.choices = []\n\n def _add_choices(field, choices):\n field.choices.extend(choices)\n # it's weird/annoying that you have to manually sync these\n field.widget.choices.extend(choices)\n\n if self.enable_cases:\n _add_choices(\n self.source_field,\n [(ct['value'], ct['text']) for app in self.all_sources.values() for ct in app['case']]\n )\n if self.enable_forms:\n _add_choices(\n self.source_field,\n [(ct['value'], ct['text']) for app in self.all_sources.values() for ct in app['form']]\n )\n\n # NOTE: This corresponds to a view-model that must be initialized in your template.\n # See the doc string of this class for more information.\n self.application_field.widget.attrs = {'data-bind': 'value: application'}\n self.source_type_field.widget.attrs = {'data-bind': 'value: sourceType'}\n self.source_field.widget.attrs = {'data-bind': '''\n options: sourcesMap[application()][sourceType()],\n optionsText: function(item){return item.text},\n optionsValue: function(item){return item.value}\n '''}", "metadata": "root.ApplicationDataSourceUIHelper.bootstrap", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 82 }, { "content": " def get_fields(self):\n fields = collections.OrderedDict()\n fields['source_type'] = self.source_type_field\n fields['application'] = self.application_field\n fields['source'] = self.source_field\n return fields", "metadata": "root.ApplicationDataSourceUIHelper.get_fields", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 116 }, { "content": " def get_app_source(self, data_dict):\n return ApplicationDataSource(data_dict['application'], data_dict['source_type'], data_dict['source'])", "metadata": "root.ApplicationDataSourceUIHelper.get_app_source", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 123 }, { "content": "def get_app_sources(domain):\n apps = get_apps_in_domain(domain, include_remote=False)\n return {\n app._id: {\n \"name\": app.name,\n \"case\": [{\"text\": t, \"value\": t} for t in app.get_case_types()],\n \"form\": [\n {\n \"text\": u'{} / {}'.format(form.get_module().default_name(), form.default_name()),\n \"value\": form.get_unique_id()\n } for form in app.get_forms()\n ]\n }\n for app in apps\n }", "metadata": "root.get_app_sources", "header": "['module', '___EOS___']", "index": 127 }, { "content": "class ApplicationDataRMIHelper(object):\n \"\"\"ApplicationDataRMIHelper is meant to generate the response for the\n djangoRMI methods required to initialize form controlled by\n hq.app_data_drilldown.ng.js.\n\n Note / todo: This Helper should be merged with ApplicationDataSourceUIHelper.\n Holding off to a different PR, as I want to isolate QA to just the exports\n (the first thing to use this) --Biyeun\n\n \"\"\"\n UNKNOWN_SOURCE = '_unknown'\n\n APP_TYPE_ALL = 'all'\n APP_TYPE_DELETED = 'deleted'\n APP_TYPE_REMOTE = 'remote'\n APP_TYPE_NONE = 'no_app'\n APP_TYPE_UNKNOWN = 'unknown'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.ApplicationDataRMIHelper", "header": "['module', '___EOS___']", "index": 144 }, { "content": " def __init__(self, domain, as_dict=True, form_placeholders=None, case_placeholders=None):\n self.domain = domain\n self.as_dict = as_dict\n default_form_placeholder = AppFormRMIPlaceholder(\n application=_(\"Select Application\"),\n module=_(\"Select Module\"),\n form=_(\"Select Form\"),\n )\n self.form_placeholders = form_placeholders or default_form_placeholder\n default_case_placeholder = AppCaseRMIPlaceholder(\n application=_(\"Select Application\"),\n case_type=_(\"Select Case Type\"),\n )\n self.case_placeholders = case_placeholders or default_case_placeholder\n if self.as_dict:\n self.form_placeholders = self.form_placeholders._asdict()\n self.case_placeholders = self.case_placeholders._asdict()", "metadata": "root.ApplicationDataRMIHelper.__init__", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 162 }, { "content": " def _get_unknown_form_possibilities(self):\n possibilities = collections.defaultdict(list)\n for app in get_exports_by_application(self.domain):\n # index by xmlns\n x = app['value']\n x['has_app'] = True\n possibilities[app['key'][2]].append(x)\n return possibilities", "metadata": "root.ApplicationDataRMIHelper._get_unknown_form_possibilities", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 180 }, { "content": " def _attach_unknown_suggestions(self, unknown_forms):\n \"\"\"If there are any unknown forms, try and find the best possible matches\n from deleted apps or copied apps. If no suggestion is found, say so\n but provide the xmlns.\n \"\"\"\n if unknown_forms:\n possibilities = self._get_unknown_form_possibilities()\n\n class AppCache(dict):\n def __init__(self, domain):\n super(AppCache, self).__init__()\n self.domain = domain\n\n def __getitem__(self, item):\n if item not in self:\n try:\n self[item] = get_app(app_id=item, domain=self.domain)\n except Http404:\n pass\n return super(AppCache, self).__getitem__(item)\n\n app_cache = AppCache(self.domain)\n\n for form in unknown_forms:\n app = None\n if form['app']['id']:\n try:\n app = app_cache[form['app']['id']]\n form['has_app'] = True\n except KeyError:\n form['app_does_not_exist'] = True\n form['possibilities'] = possibilities[form['xmlns']]\n if form['possibilities']:\n form['duplicate'] = True\n else:\n if app.domain != self.domain:\n logging.error(\"submission tagged with app from wrong domain: %s\" % app.get_id)\n else:\n if app.copy_of:\n try:\n app = app_cache[app.copy_of]\n form['app_copy'] = {'id': app.get_id, 'name': app.name}\n except KeyError:\n form['app_copy'] = {'id': app.copy_of, 'name': '?'}\n if app.is_deleted():\n form['app_deleted'] = {'id': app.get_id}\n try:\n app_forms = app.get_xmlns_map()[form['xmlns']]\n except AttributeError:\n # it's a remote app\n app_forms = None\n form['has_app'] = True\n if app_forms:\n app_form = app_forms[0]\n if app_form.doc_type == 'UserRegistrationForm':\n form['is_user_registration'] = True\n else:\n app_module = app_form.get_module()\n form['module'] = app_module\n form['form'] = app_form\n form['show_xmlns'] = False\n\n if not form.get('app_copy') and not form.get('app_deleted'):\n form['no_suggestions'] = True\n if app:\n form['app'] = {'id': app.get_id, 'name': app.name, 'langs': app.langs}\n else:\n form['possibilities'] = possibilities[form['xmlns']]\n if form['possibilities']:\n form['duplicate'] = True\n else:\n form['no_suggestions'] = True\n return unknown_forms", "metadata": "root.ApplicationDataRMIHelper._attach_unknown_suggestions", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 189 }, { "content": " @staticmethod\n def _sorkey_form(form):\n app_id = form['app']['id']\n if form.get('has_app', False):\n order = 0 if not form.get('app_deleted') else 1\n app_name = form['app']['name']\n module = form.get('module')\n if module:\n # module is sometimes wrapped json, sometimes a dict!\n module_id = module['id'] if 'id' in module else module.id\n else:\n module_id = -1 if form.get('is_user_registration') else 1000\n app_form = form.get('form')\n if app_form:\n # app_form is sometimes wrapped json, sometimes a dict!\n form_id = app_form['id'] if 'id' in app_form else app_form.id\n else:\n form_id = -1\n return (order, app_name, app_id, module_id, form_id)\n else:\n form_xmlns = form['xmlns']\n return (2, form_xmlns, app_id)", "metadata": "root.ApplicationDataRMIHelper._sorkey_form", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 263 }, { "content": " @property\n @memoized\n def _all_forms(self):\n forms = []\n unknown_forms = []\n for f in get_exports_by_form(self.domain):\n form = f['value']\n if form.get('app_deleted') and not form.get('submissions'):\n continue\n if 'app' in form:\n form['has_app'] = True\n forms.append(form)\n else:\n app_id = f['key'][1] or ''\n form['app'] = {\n 'id': app_id\n }\n form['has_app'] = False\n form['show_xmlns'] = True\n unknown_forms.append(form)\n forms.extend(self._attach_unknown_suggestions(unknown_forms))\n return sorted(forms, key=self._sorkey_form)", "metadata": "root.ApplicationDataRMIHelper._all_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 286 }, { "content": " @property\n @memoized\n def _no_app_forms(self):\n return filter(lambda f: not f.get('has_app', False), self._all_forms)", "metadata": "root.ApplicationDataRMIHelper._no_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 309 }, { "content": " @property\n @memoized\n def _remote_app_forms(self):\n return filter(lambda f: f.get('has_app', False) and f.get('show_xmlns', False), self._all_forms)", "metadata": "root.ApplicationDataRMIHelper._remote_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 314 }, { "content": " @property\n @memoized\n def _deleted_app_forms(self):\n return filter(\n lambda f: f.get('has_app', False) and f.get('app_deleted') and not f.get('show_xmlns', False),\n self._all_forms\n )", "metadata": "root.ApplicationDataRMIHelper._deleted_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 319 }, { "content": " @property\n @memoized\n def _available_app_forms(self):\n return filter(\n lambda f: f.get('has_app', False) and not f.get('app_deleted') and not f.get('show_xmlns', False),\n self._all_forms\n )", "metadata": "root.ApplicationDataRMIHelper._available_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 327 }, { "content": " @property\n @memoized\n def _unknown_forms(self):\n return itertools.chain(self._deleted_app_forms, self._remote_app_forms, self._no_app_forms)", "metadata": "root.ApplicationDataRMIHelper._unknown_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 335 }, { "content": " def _get_app_type_choices(self, as_dict=True):\n choices = [(_(\"Applications\"), self.APP_TYPE_ALL)]\n if self._remote_app_forms or self._deleted_app_forms:\n choices.append((_(\"Unknown\"), self.APP_TYPE_UNKNOWN))\n choices = map(lambda c: RMIDataChoice(id=c[1], text=c[0], data={}), choices)\n if as_dict:\n choices = map(lambda c: c._asdict(), choices)\n return choices", "metadata": "root.ApplicationDataRMIHelper._get_app_type_choices", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 340 }, { "content": " @staticmethod\n def _get_unique_choices(choices):\n final_choices = collections.defaultdict(list)\n for k, val_list in choices.items():\n new_val_ids = []\n final_choices[k] = []\n for v in val_list:\n if v.id not in new_val_ids:\n new_val_ids.append(v.id)\n final_choices[k].append(v)\n return final_choices", "metadata": "root.ApplicationDataRMIHelper._get_unique_choices", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 349 }, { "content": " def _get_applications_by_type(self, as_dict=True):\n apps_by_type = (\n (self.APP_TYPE_ALL, self._available_app_forms),\n (self.APP_TYPE_UNKNOWN, self._unknown_forms)\n )\n _app_fmt = lambda c: (c[0], map(lambda f: RMIDataChoice(\n f['app']['id'] if f.get('has_app', False) else self.UNKNOWN_SOURCE,\n f['app']['name'] if f.get('has_app', False) else _(\"Unknown Application\"),\n f\n ), c[1]))\n apps_by_type = map(_app_fmt, apps_by_type)\n apps_by_type = dict(apps_by_type)\n apps_by_type = self._get_unique_choices(apps_by_type)\n\n # include restore URL for deleted apps\n for app in apps_by_type[self.APP_TYPE_DELETED]:\n app.data['restoreUrl'] = reverse('view_app', args=[self.domain, app.id])\n\n if as_dict:\n apps_by_type = self._map_chosen_by_choice_as_dict(apps_by_type)\n return apps_by_type", "metadata": "root.ApplicationDataRMIHelper._get_applications_by_type", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 361 }, { "content": " @staticmethod\n def _map_chosen_by_choice_as_dict(chosen_by_choice):\n for k, v in chosen_by_choice.items():\n chosen_by_choice[k] = map(lambda f: f._asdict(), v)\n return chosen_by_choice", "metadata": "root.ApplicationDataRMIHelper._map_chosen_by_choice_as_dict", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 383 }, { "content": " @staticmethod\n def _get_item_name(item, has_app, app_lang, default_name):\n item_name = None\n if has_app and item is not None:\n item_name = item['name'].get(app_lang) or item['name'].get('en')\n return item_name or default_name", "metadata": "root.ApplicationDataRMIHelper._get_item_name", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 389 }, { "content": " def _get_modules_and_forms(self, as_dict=True):\n modules_by_app = collections.defaultdict(list)\n forms_by_app_by_module = {}\n for form in self._all_forms:\n has_app = form.get('has_app', False)\n app_lang = form['app']['langs'][0] if 'langs' in form['app'] else 'en'\n app_id = form['app']['id'] if has_app else self.UNKNOWN_SOURCE\n module = form.get('module')\n module_id = (module['id'] if has_app and module is not None\n else self.UNKNOWN_SOURCE)\n module_name = self._get_item_name(\n module, has_app, app_lang, _(\"Unknown Module\")\n )\n form_xmlns = form['xmlns']\n form_name = form_xmlns\n if not form.get('show_xmlns', False):\n form_name = self._get_item_name(\n form.get('form'), has_app, app_lang,\n \"{} (potential matches)\".format(form_xmlns)\n )\n module_choice = RMIDataChoice(\n module_id,\n module_name,\n form\n )\n form_choice = RMIDataChoice(\n form_xmlns,\n form_name,\n form\n )\n if as_dict:\n form_choice = form_choice._asdict()\n\n if app_id not in forms_by_app_by_module:\n forms_by_app_by_module[app_id] = collections.defaultdict(list)\n modules_by_app[app_id].append(module_choice)\n forms_by_app_by_module[app_id][module_id].append(form_choice)\n\n modules_by_app = self._get_unique_choices(modules_by_app)\n if as_dict:\n modules_by_app = self._map_chosen_by_choice_as_dict(modules_by_app)\n return modules_by_app, forms_by_app_by_module", "metadata": "root.ApplicationDataRMIHelper._get_modules_and_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 396 }, { "content": " def get_form_rmi_response(self):\n \"\"\"Use this to generate the response that initializes the form\n controlled by hq.app_data_drilldown.ng.js if you are drilling down\n to an XForm + app_id pair\"\"\"\n modules_by_app, forms_by_app_by_module = self._get_modules_and_forms(self.as_dict)\n response = AppFormRMIResponse(\n app_types=self._get_app_type_choices(self.as_dict),\n apps_by_type=self._get_applications_by_type(self.as_dict),\n modules_by_app=modules_by_app,\n forms_by_app_by_module=forms_by_app_by_module,\n placeholders=self.form_placeholders,\n )\n if self.as_dict:\n response = response._asdict()\n return response", "metadata": "root.ApplicationDataRMIHelper.get_form_rmi_response", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 439 }, { "content": " def _get_cases_for_apps(self, apps_by_type, as_dict=True):\n used_case_types = set()\n case_types_by_app = collections.defaultdict(list)\n for app_type, apps in apps_by_type.items():\n for app_choice in apps:\n if not app_choice.id == self.UNKNOWN_SOURCE:\n app = get_app(self.domain, app_choice.id)\n case_types = []\n if hasattr(app, 'modules'):\n case_types = set([\n module.case_type\n for module in app.modules if module.case_type\n ])\n used_case_types = used_case_types.union(case_types)\n case_types = map(lambda c: RMIDataChoice(\n id=c,\n text=c,\n data=app_choice.data\n ), case_types)\n if as_dict:\n case_types = map(lambda c: c._asdict(), case_types)\n case_types_by_app[app_choice.id] = case_types\n else:\n all_case_types = CaseAccessors(self.domain).get_case_types()\n unknown_case_types = all_case_types.difference(used_case_types)\n unknown_case_types = map(lambda c: RMIDataChoice(\n id=c,\n text=c,\n data={\n 'unknown': True,\n }\n ), unknown_case_types)\n if as_dict:\n unknown_case_types = map(lambda c: c._asdict(), unknown_case_types)\n case_types_by_app[self.UNKNOWN_SOURCE] = unknown_case_types\n\n return case_types_by_app", "metadata": "root.ApplicationDataRMIHelper._get_cases_for_apps", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 455 }, { "content": " def get_case_rmi_response(self):\n \"\"\"Use this to generate a response that initializes the form\n controlled by hq.app_data_drilldown.ng.js if you are drilling down to\n a Case Type.\n \"\"\"\n apps_by_type = self._get_applications_by_type(as_dict=False)\n case_types_by_app = self._get_cases_for_apps(apps_by_type, self.as_dict)\n if self.as_dict:\n apps_by_type = self._map_chosen_by_choice_as_dict(apps_by_type)\n response = AppCaseRMIResponse(\n app_types=self._get_app_type_choices(),\n apps_by_type=apps_by_type,\n case_types_by_app=case_types_by_app,\n placeholders=self.case_placeholders\n )\n if self.as_dict:\n response = response._asdict()\n return response", "metadata": "root.ApplicationDataRMIHelper.get_case_rmi_response", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 493 } ]	[ { "span": "from django.conf import settings", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 32 }, { "span": "from corehq.apps.app_manager.models import Application", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 54 }, { "span": "from couchforms.models import XFormInstance", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 43 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "import_", "logging_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "conf_", "import_", "settings_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "core_", "._", "urlresolvers_", "import_", "reverse_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "http_", "import_", "Http404_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "collections_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "itertools_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "import_", "forms_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "utils_", "._", "translation_", "import_", "ugettext_", "as_", "\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "core", "hq", "_", "._", "apps_", "._", "app", "\\u", "manager_", "._", "analytics", "_", "import_", "get", "\\u", "export", "s", "\\u", "by", "\\u", "application_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "core", "hq", "_", "._", "apps_", "._", "app", "\\u", "manager_", "._", "dba", "ccess", "ors_", "import_", "get", "\\u", "apps", "\\u", "in", "\\u", "domain_", ",_", "get", "\\u", "app_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "core", "hq", "_", "._", "apps_", "._", "app", "\\u", "manager_", "._", "models_", "import_", "Application_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "core", "hq", "_", "._", "form", "\\u", "processor_", "._", "interfaces_", "._", "dba", "ccess", "ors_", "import_", "Case", "Accessor", "s_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", 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Unused import	taoliu/taolib/CoreLib/BinKeeper/__init__.py	[ { "content": "# Time-stamp: <2011-01-31 17:04:32 Tao Liu>\n\n\"\"\"Module Description: BinKeeper for Wiggle-like tracks.\n\nCopyright (c) 2008 Tao Liu <[email protected]>\n\nThis code is free software; you can redistribute it and/or modify it\nunder the terms of the BSD License (see the file COPYING included with\nthe distribution).\n\n@status: experimental\n@version: $Revision$\n@author: Tao Liu\n@contact: [email protected]\n\"\"\"\n\n# ------------------------------------\n# python modules\n# ------------------------------------\n\nimport sys\nimport re\nfrom bisect import insort,bisect_left,bisect_right\nfrom array import array\n# ------------------------------------\n# constants\n# ------------------------------------\n# to determine the byte size\nif array('H',[1]).itemsize == 2:\n BYTE2 = 'H'\nelse:\n raise Exception(\"BYTE2 type cannot be determined!\")\n\nif array('I',[1]).itemsize == 4:\n BYTE4 = 'I'\nelif array('L',[1]).itemsize == 4:\n BYTE4 = 'L'\nelse:\n raise Exception(\"BYTE4 type cannot be determined!\")\n\nif array('f',[1]).itemsize == 4:\n FBYTE4 = 'f'\nelif array('d',[1]).itemsize == 4:\n FBYTE4 = 'd'\nelse:\n raise Exception(\"BYTE4 type cannot be determined!\")\n\n# ------------------------------------\n# Misc functions\n# ------------------------------------\n\n# ------------------------------------\n# Classes\n# ------------------------------------\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class BinKeeperI:\n \"\"\"BinKeeper keeps point data from a chromosome in a bin list.\n\n Example:\n >>> from taolib.CoreLib.Parser import WiggleIO\n >>> w = WiggleIO('sample.wig')\n >>> bk = w.build_binKeeper()\n >>> bk['chrI'].pp2v(1000,2000) # to extract values in chrI:1000..2000\n \"\"\"\n\n\n\n\n\n\n\n", "metadata": "root.BinKeeperI", "header": "['module', '___EOS___']", "index": 54 }, { "content": " def __init__ (self,binsize=8000,chromosomesize=1e9):\n \"\"\"Initializer.\n\n Parameters:\n binsize : size of bin in Basepair\n chromosomesize : size of chromosome, default is 1G\n \"\"\"\n self.binsize = binsize\n self.binnumber = int(chromosomesize/self.binsize)+1\n self.cage = []\n a = self.cage.append\n for i in xrange(self.binnumber):\n a([array(BYTE4,[]),array(FBYTE4,[])])", "metadata": "root.BinKeeperI.__init__", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 63 }, { "content": " def add ( self, p, value ):\n \"\"\"Add a position into BinKeeper.\n\n Note: position must be sorted before adding. Otherwise, pp2v\n and pp2p will not work.\n \"\"\"\n bin = p/self.binsize\n self.cage[bin][0].append(p)\n self.cage[bin][1].append(value) ", "metadata": "root.BinKeeperI.add", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 77 }, { "content": " def p2bin (self, p ):\n \"\"\"Return the bin index for a position.\n \n \"\"\"\n return p/self.binsize", "metadata": "root.BinKeeperI.p2bin", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 87 }, { "content": " def p2cage (self, p):\n \"\"\"Return the bin containing the position.\n \n \"\"\"\n return self.cage[p/self.binsize]", "metadata": "root.BinKeeperI.p2cage", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 93 }, { "content": " def __pp2cages (self, p1, p2):\n assert p1<=p2\n bin1 = self.p2bin(p1)\n bin2 = self.p2bin(p2)+1\n t = [array(BYTE4,[]),array(FBYTE4,[])]\n for i in xrange(bin1,bin2):\n t[0].extend(self.cage[i][0])\n t[1].extend(self.cage[i][1]) \n return t", "metadata": "root.BinKeeperI.__pp2cages", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 99 }, { "content": " def pp2p (self, p1, p2):\n \"\"\"Give the position list between two given positions.\n\n Parameters:\n p1 : start position\n p2 : end position\n Return Value:\n list of positions between p1 and p2.\n \"\"\"\n (ps,vs) = self.__pp2cages(p1,p2)\n p1_in_cages = bisect_left(ps,p1)\n p2_in_cages = bisect_right(ps,p2)\n return ps[p1_in_cages:p2_in_cages]", "metadata": "root.BinKeeperI.pp2p", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 109 }, { "content": " def pp2v (self, p1, p2):\n \"\"\"Give the value list between two given positions.\n\n Parameters:\n p1 : start position\n p2 : end position\n Return Value:\n list of values whose positions are between p1 and p2.\n \"\"\"\n (ps,vs) = self.__pp2cages(p1,p2)\n p1_in_cages = bisect_left(ps,p1)\n p2_in_cages = bisect_right(ps,p2)\n return vs[p1_in_cages:p2_in_cages]", "metadata": "root.BinKeeperI.pp2v", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 123 }, { "content": " def pp2pv (self, p1, p2):\n \"\"\"Give the (position,value) list between two given positions.\n\n Parameters:\n p1 : start position\n p2 : end position\n Return Value:\n list of (position,value) between p1 and p2.\n \"\"\"\n (ps,vs) = self.__pp2cages(p1,p2)\n p1_in_cages = bisect_left(ps,p1)\n p2_in_cages = bisect_right(ps,p2)\n return zip(ps[p1_in_cages:p2_in_cages],vs[p1_in_cages:p2_in_cages])", "metadata": "root.BinKeeperI.pp2pv", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 138 } ]	[ { "span": "import sys", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 10 }, { "span": "from bisect import insort,bisect_left,bisect_right", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 50 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "Time", "-", "stamp", ":", " ", "<", "2011", "-0", "1", "-", "3", "1", 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Imprecise assert	globocom/tornado-es/tornadoes/tests/unit/test_tornadoes.py	[ { "content": " def test_should_make_two_searches(self):\n self._make_multisearch()\n response = self._verify_status_code_and_return_response()\n self.assertEqual(response['responses'][0]['hits']['hits'][0]['_id'], \"171171\")\n self.assertFalse(\"hits\" in response['responses'][1])", "metadata": "root.TestESConnection.test_should_make_two_searches", "header": "['class', 'TestESConnection', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 88 }, { "content": " def test_count_specific_query_with_many_parameters(self):\n source = {\"query\": {\"term\": {\"_id\": \"171171\"}}}\n source = self._set_count_query(source)\n parameters = {'df': '_id', 'test': True}\n self.es_connection.count(callback=self.stop, source=source, parameters=parameters)\n response = self.wait()\n response_dict = self._verify_response_and_returns_dict(response)\n self.assertEqual(response_dict[\"count\"], 1)\n self.assertTrue('df=_id' in response.request.url)\n self.assertTrue('test=True' in response.request.url)", "metadata": "root.TestESConnection.test_count_specific_query_with_many_parameters", "header": "['class', 'TestESConnection', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 168 }, { "content": " @gen_test\n def test_should_make_two_searches(self):\n self._make_multisearch()\n response = yield self.es_connection.apply_search()\n response = self._verify_status_code_and_return_response(response)\n\n self.assertEqual(response['responses'][0]['hits']['hits'][0]['_id'], \"171171\")\n self.assertFalse(\"hits\" in response['responses'][1])", "metadata": "root.TestESConnectionWithTornadoGen.test_should_make_two_searches", "header": "['class', 'TestESConnectionWithTornadoGen', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 221 }, { "content": " @gen_test\n def test_count_specific_query_with_many_parameters(self):\n source = {\"query\": {\"term\": {\"_id\": \"171171\"}}}\n source = self._set_count_query(source)\n parameters = {'df': '_id', 'test': True}\n response = yield self.es_connection.count(callback=self.stop, source=source, parameters=parameters)\n self.assertCount(response, 1)\n self.assertTrue('df=_id' in response.request.url)\n self.assertTrue('test=True' in response.request.url)", "metadata": "root.TestESConnectionWithTornadoGen.test_count_specific_query_with_many_parameters", "header": "['class', 'TestESConnectionWithTornadoGen', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 289 } ]	[ { "span": "self.assertFalse(\"hits\" in response['responses'][1])", "start_line": 92, "start_column": 8, "end_line": 92, "end_column": 60 }, { "span": "self.assertTrue('df=_id' in response.request.url)", "start_line": 176, "start_column": 8, "end_line": 176, "end_column": 57 }, { "span": "self.assertTrue('test=True' in response.request.url)", "start_line": 177, "start_column": 8, "end_line": 177, "end_column": 60 }, { "span": "self.assertFalse(\"hits\" in response['responses'][1])", "start_line": 228, "start_column": 8, "end_line": 228, "end_column": 60 }, { "span": "self.assertTrue('df=_id' in response.request.url)", "start_line": 296, "start_column": 8, "end_line": 296, "end_column": 57 }, { "span": "self.assertTrue('test=True' in response.request.url)", "start_line": 297, "start_column": 8, "end_line": 297, "end_column": 60 } ]	[]	1	true	[ "[CLS]_", "Imp", "reci", "se_", "assert_", "[SEP]_", "class_", "Test", "ESC", "onnect", "ion_", "(_", "ESC", "onnect", "ion", "Test", "Base_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "shou", "ld", "\\u", "make", "\\u", "two", "\\u", "searche", "s_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "\\u", "make", "\\u", "multis", "earch_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "response_", "=_", "self_", "._", "\\u", "verify", "\\u", 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Unused import	enthought/traitsui/integrationtests/ui/check_list_editor_test2.py	[ { "content": "#-------------------------------------------------------------------------------\n#\n# CheckListEditor test case for Traits UI\n#\n# Written by: David C. Morrill\n#\n# Date: 06/29/2005\n#\n# (c) Copyright 2005 by Enthought, Inc.\n# License: BSD Style.\n#\n#-------------------------------------------------------------------------------\n\n#-------------------------------------------------------------------------------\n# Imports:\n#-------------------------------------------------------------------------------\n\nfrom traits.api \\\n import Enum, List, Str\n\nfrom traitsui.api \\\n import Handler, View, Item, CheckListEditor\n\n#-------------------------------------------------------------------------------\n# 'CheckListTest' class:\n#-------------------------------------------------------------------------------\n\n\n#-------------------------------------------------------------------------------\n# Run the tests:\n#-------------------------------------------------------------------------------\n\nif __name__ == '__main__':\n clt = CheckListTest()\n clt.configure_traits( view = 'simple_view' )\n print 'value:', clt.value\n clt.configure_traits( view = 'custom_view' )\n print 'value:', clt.value\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class CheckListTest ( Handler ):\n\n #---------------------------------------------------------------------------\n # Trait definitions:\n #---------------------------------------------------------------------------\n\n value = List( editor = CheckListEditor( name = 'values', cols = 5 ) )\n values = List( Str )\n values_text = Str( 'red orange yellow green blue indigo violet' )\n\n #---------------------------------------------------------------------------\n # Traits view definitions:\n #---------------------------------------------------------------------------\n\n simple_view = View( 'value', 'values_text@' )\n custom_view = View( 'value@', 'values_text@' )\n\n #---------------------------------------------------------------------------\n # 'Initializes the object:\n #---------------------------------------------------------------------------\n\n\n #---------------------------------------------------------------------------\n # Event handlers:\n #---------------------------------------------------------------------------\n", "metadata": "root.CheckListTest", "header": "['module', '___EOS___']", "index": 27 }, { "content": " def __init__ ( self, traits ):\n super( CheckListTest, self ).__init__( traits )\n self._values_text_changed()", "metadata": "root.CheckListTest.__init__", "header": "['class', 'CheckListTest', '(', 'Handler', ')', ':', '___NEWLINE___', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '# Trait definitions:', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '___EOS___']", "index": 48 }, { "content": " def _values_text_changed ( self ):\n self.values = self.values_text.split()", "metadata": "root.CheckListTest._values_text_changed", "header": "['class', 'CheckListTest', '(', 'Handler', ')', ':', '___NEWLINE___', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '# Trait definitions:', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '___EOS___']", "index": 56 } ]	[ { "span": "from traits.api \\\n import Enum, List, Str", "start_line": 17, "start_column": 0, "end_line": 18, "end_column": 26 }, { "span": "from traitsui.api \\\n import Handler, View, Item, CheckListEditor", "start_line": 20, "start_column": 0, "end_line": 21, "end_column": 47 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#-", "--------------", "--------------", "--------------", "--------------", "--------------", "--------", "_", "\\u\\u\\uNL\\u\\u\\u_", "#", "_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", " ", "Check", "List", "Edit", "or", " ", "test", 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" ", " ", "Trait", " ", "definit", "ion", "s", ":_", "\\u\\u\\uNL\\u\\u\\u_", "#-", "--------------", "--------------", "--------------", "--------------", "--------------", "----", "_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u", "values", "\\u", "text", "\\u", "changed_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "values_", "=_", "self_", "._", "values", "\\u", "text_", "._", "split_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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Unused local variable	chrippa/livestreamer/src/livestreamer/packages/flashmedia/amf.py	[ { "content": " @classmethod\n def _deserialize(cls, io):\n name = AMF0String.read(io)\n must_understand = bool(U8.read(io))\n length = U32BE.read(io)\n value = AMF0Value.read(io)\n\n return cls(name, value, must_understand)", "metadata": "root.AMFHeader._deserialize", "header": "['class', 'AMFHeader', '(', 'Packet', ')', ':', '___EOS___']", "index": 27 }, { "content": " @classmethod\n def _deserialize(cls, io):\n target_uri = AMF0String.read(io)\n response_uri = AMF0String.read(io)\n length = U32BE.read(io)\n value = AMF0Value.read(io)\n\n return cls(target_uri, response_uri, value)", "metadata": "root.AMFMessage._deserialize", "header": "['class', 'AMFMessage', '(', 'Packet', ')', ':', '___EOS___']", "index": 60 } ]	[ { "span": "length ", "start_line": 31, "start_column": 8, "end_line": 31, "end_column": 14 }, { "span": "length ", "start_line": 64, "start_column": 8, "end_line": 64, "end_column": 14 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "class_", "AM", "FH", "eader", "_", "(_", "Packet_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "@_", "classmethod_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "\\u", "deserialize_", "(_", "cls_", ",_", "io_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "name_", "=_", "AM", "F0", "String_", "._", "read_", "(_", "io_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "must", "\\u", "underst", "and_", "=_", "bool_", "(_", "U", "8_", "._", "read_", "(_", "io_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "length_", "=_", "U3", "2", "BE_", "._", "read_", "(_", "io_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "value_", "=_", "AM", "F0", "Value_", "._", "read_", "(_", "io_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "return_", "cls_", "(_", "name_", ",_", "value_", ",_", "must", "\\u", "underst", "and_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "AM", "FM", "essage_", "(_", "Packet_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "@_", "classmethod_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "\\u", "deserialize_", "(_", "cls_", ",_", "io_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "target", "\\u", "uri_", "=_", "AM", "F0", "String_", "._", "read_", "(_", "io_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "response", "\\u", "uri_", "=_", "AM", "F0", "String_", "._", "read_", "(_", "io_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "length_", "=_", "U3", "2", "BE_", "._", "read_", "(_", "io_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "value_", "=_", "AM", "F0", "Value_", "._", "read_", "(_", "io_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "return_", "cls_", "(_", "target", "\\u", "uri_", ",_", "response", "\\u", "uri_", ",_", "value_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	EasyEngine/easyengine/ee/cli/plugins/site.py	[ { "content": "# \"\"\"EasyEngine site controller.\"\"\"\nfrom cement.core.controller import CementBaseController, expose\nfrom cement.core import handler, hook\nfrom ee.core.cron import EECron\nfrom ee.core.sslutils import SSL\nfrom ee.core.variables import EEVariables\nfrom ee.core.domainvalidate import ValidateDomain\nfrom ee.core.fileutils import EEFileUtils\nfrom ee.cli.plugins.site_functions import \nfrom ee.core.services import EEService\nfrom ee.cli.plugins.sitedb import \nfrom ee.core.git import EEGit\nfrom subprocess import Popen\nfrom ee.core.nginxhashbucket import hashbucket\nimport sys\nimport os\nimport glob\nimport subprocess\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def ee_site_hook(app):\n # do something with the ``app`` object here.\n from ee.core.database import init_db\n import ee.cli.plugins.models\n init_db(app)", "metadata": "root.ee_site_hook", "header": "['module', '___EOS___']", "index": 20 }, { "content": "class EESiteController(CementBaseController):\n class Meta:\n label = 'site'\n stacked_on = 'base'\n stacked_type = 'nested'\n description = ('Performs website specific operations')\n arguments = [\n (['site_name'],\n dict(help='Website name', nargs='?')),\n ]\n usage = \"ee site (command) <site_name> [options]\"\n\n\n\n\n\n\n", "metadata": "root.EESiteController", "header": "['module', '___EOS___']", "index": 27 }, { "content": " @expose(hide=True)\n def default(self):\n self.app.args.print_help()", "metadata": "root.EESiteController.default", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 39 }, { "content": " @expose(help=\"Enable site example.com\")\n def enable(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n # validate domain name\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n # check if site exists\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.info(self, \"Enable domain {0:10} \\t\".format(ee_domain), end='')\n EEFileUtils.create_symlink(self,\n ['/etc/nginx/sites-available/{0}'\n .format(ee_domain),\n '/etc/nginx/sites-enabled/{0}'\n .format(ee_domain)])\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"Enabled {0} \"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, enabled=True)\n Log.info(self, \"[\" + Log.ENDC + \"OK\" + Log.OKBLUE + \"]\")\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"nginx configuration file does not exist\"\n .format(ee_domain))", "metadata": "root.EESiteController.enable", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 43 }, { "content": " @expose(help=\"Disable site example.com\")\n def disable(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n\n except IOError as e:\n Log.error(self, 'could not input site name')\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n # check if site exists\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.info(self, \"Disable domain {0:10} \\t\"\n .format(ee_domain), end='')\n if not os.path.isfile('/etc/nginx/sites-enabled/{0}'\n .format(ee_domain)):\n Log.debug(self, \"Site {0} already disabled\".format(ee_domain))\n Log.info(self, \"[\" + Log.FAIL + \"Failed\" + Log.OKBLUE+\"]\")\n else:\n EEFileUtils.remove_symlink(self,\n '/etc/nginx/sites-enabled/{0}'\n .format(ee_domain))\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"Disabled {0} \"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, enabled=False)\n Log.info(self, \"[\" + Log.ENDC + \"OK\" + Log.OKBLUE + \"]\")\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"nginx configuration file does not exist\"\n .format(ee_domain))", "metadata": "root.EESiteController.disable", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 80 }, { "content": " @expose(help=\"Get example.com information\")\n def info(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n ee_db_name = ''\n ee_db_user = ''\n ee_db_pass = ''\n hhvm = ''\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n siteinfo = getSiteInfo(self, ee_domain)\n\n sitetype = siteinfo.site_type\n cachetype = siteinfo.cache_type\n ee_site_webroot = siteinfo.site_path\n access_log = (ee_site_webroot + '/logs/access.log')\n error_log = (ee_site_webroot + '/logs/error.log')\n ee_db_name = siteinfo.db_name\n ee_db_user = siteinfo.db_user\n ee_db_pass = siteinfo.db_password\n ee_db_host = siteinfo.db_host\n if sitetype != \"html\":\n hhvm = (\"enabled\" if siteinfo.is_hhvm else \"disabled\")\n if sitetype == \"proxy\":\n access_log = \"/var/log/nginx/{0}.access.log\".format(ee_domain)\n error_log = \"/var/log/nginx/{0}.error.log\".format(ee_domain)\n ee_site_webroot = ''\n\n php_version = siteinfo.php_version\n pagespeed = (\"enabled\" if siteinfo.is_pagespeed else \"disabled\")\n ssl = (\"enabled\" if siteinfo.is_ssl else \"disabled\")\n if (ssl == \"enabled\"):\n sslprovider = \"Lets Encrypt\"\n sslexpiry = str(SSL.getExpirationDate(self,ee_domain))\n else:\n sslprovider = ''\n sslexpiry = ''\n data = dict(domain=ee_domain, webroot=ee_site_webroot,\n accesslog=access_log, errorlog=error_log,\n dbname=ee_db_name, dbuser=ee_db_user,php_version=php_version,\n dbpass=ee_db_pass, hhvm=hhvm, pagespeed=pagespeed,\n ssl=ssl, sslprovider=sslprovider, sslexpiry= sslexpiry,\n type=sitetype + \" \" + cachetype + \" ({0})\"\n .format(\"enabled\" if siteinfo.is_enabled else\n \"disabled\"))\n self.app.render((data), 'siteinfo.mustache')\n else:\n Log.error(self, \"nginx configuration file does not exist\"\n .format(ee_domain))", "metadata": "root.EESiteController.info", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 120 }, { "content": " @expose(help=\"Monitor example.com logs\")\n def log(self):\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n ee_site_webroot = getSiteInfo(self, ee_domain).site_path\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n logfiles = glob.glob(ee_site_webroot + '/logs/*.log')\n if logfiles:\n logwatch(self, logfiles)", "metadata": "root.EESiteController.log", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 180 }, { "content": " @expose(help=\"Display Nginx configuration of example.com\")\n def show(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n # TODO Write code for ee site edit command here\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.info(self, \"Display NGINX configuration for {0}\"\n .format(ee_domain))\n f = open('/etc/nginx/sites-available/{0}'.format(ee_domain),\n encoding='utf-8', mode='r')\n text = f.read()\n Log.info(self, Log.ENDC + text)\n f.close()\n else:\n Log.error(self, \"nginx configuration file does not exists\"\n .format(ee_domain))", "metadata": "root.EESiteController.show", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 192 }, { "content": " @expose(help=\"Change directory to site webroot\")\n def cd(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'Unable to read input, please try again')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n ee_site_webroot = getSiteInfo(self, ee_domain).site_path\n EEFileUtils.chdir(self, ee_site_webroot)\n\n try:\n subprocess.call(['bash'])\n except OSError as e:\n Log.debug(self, \"{0}{1}\".format(e.errno, e.strerror))\n Log.error(self, \"unable to change directory\")", "metadata": "root.EESiteController.cd", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 221 }, { "content": "class EESiteEditController(CementBaseController):\n class Meta:\n label = 'edit'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = ('Edit Nginx configuration of site')\n arguments = [\n (['site_name'],\n dict(help='domain name for the site',\n nargs='?')),\n (['--pagespeed'],\n dict(help=\"edit pagespeed configuration for site\",\n action='store_true')),\n ]\n", "metadata": "root.EESiteEditController", "header": "['module', '___EOS___']", "index": 247 }, { "content": " @expose(hide=True)\n def default(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'Unable to read input, Please try again')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n ee_site_webroot = EEVariables.ee_webroot + ee_domain\n\n if not self.app.pargs.pagespeed:\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n try:\n EEShellExec.invoke_editor(self, '/etc/nginx/sites-availa'\n 'ble/{0}'.format(ee_domain))\n except CommandExecutionError as e:\n Log.error(self, \"Failed invoke editor\")\n if (EEGit.checkfilestatus(self, \"/etc/nginx\",\n '/etc/nginx/sites-available/{0}'.format(ee_domain))):\n EEGit.add(self, [\"/etc/nginx\"], msg=\"Edit website: {0}\"\n .format(ee_domain))\n # Reload NGINX\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"nginx configuration file does not exists\"\n .format(ee_domain))\n\n elif self.app.pargs.pagespeed:\n if os.path.isfile('{0}/conf/nginx/pagespeed.conf'\n .format(ee_site_webroot)):\n try:\n EEShellExec.invoke_editor(self, '{0}/conf/nginx/'\n 'pagespeed.conf'\n .format(ee_site_webroot))\n except CommandExecutionError as e:\n Log.error(self, \"Failed invoke editor\")\n if (EEGit.checkfilestatus(self, \"{0}/conf/nginx\"\n .format(ee_site_webroot),\n '{0}/conf/nginx/pagespeed.conf'.format(ee_site_webroot))):\n EEGit.add(self, [\"{0}/conf/nginx\".format(ee_site_webroot)],\n msg=\"Edit Pagespped config of site: {0}\"\n .format(ee_domain))\n # Reload NGINX\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"Pagespeed configuration file does not exists\"\n .format(ee_domain))", "metadata": "root.EESiteEditController.default", "header": "['class', 'EESiteEditController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 262 }, { "content": "class EESiteCreateController(CementBaseController):\n class Meta:\n label = 'create'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = ('this commands set up configuration and installs '\n 'required files as options are provided')\n arguments = [\n (['site_name'],\n dict(help='domain name for the site to be created.',\n nargs='?')),\n (['--html'],\n dict(help=\"create html site\", action='store_true')),\n (['--php'],\n dict(help=\"create php site\", action='store_true')),\n (['--php7'],\n dict(help=\"create php 7.0 site\", action='store_true')),\n (['--mysql'],\n dict(help=\"create mysql site\", action='store_true')),\n (['--wp'],\n dict(help=\"create wordpress single site\",\n action='store_true')),\n (['--wpsubdir'],\n dict(help=\"create wordpress multisite with subdirectory setup\",\n action='store_true')),\n (['--wpsubdomain'],\n dict(help=\"create wordpress multisite with subdomain setup\",\n action='store_true')),\n (['--w3tc'],\n dict(help=\"create wordpress single/multi site with w3tc cache\",\n action='store_true')),\n (['--wpfc'],\n dict(help=\"create wordpress single/multi site with wpfc cache\",\n action='store_true')),\n (['--wpsc'],\n dict(help=\"create wordpress single/multi site with wpsc cache\",\n action='store_true')),\n (['--wpredis'],\n dict(help=\"create wordpress single/multi site with redis cache\",\n action='store_true')),\n (['--hhvm'],\n dict(help=\"create HHVM site\", action='store_true')),\n (['--pagespeed'],\n dict(help=\"create pagespeed site\", action='store_true')),\n (['-le','--letsencrypt'],\n dict(help=\"configure letsencrypt ssl for the site\", action='store_true')),\n (['--user'],\n dict(help=\"provide user for wordpress site\")),\n (['--email'],\n dict(help=\"provide email address for wordpress site\")),\n (['--pass'],\n dict(help=\"provide password for wordpress user\",\n dest='wppass')),\n (['--proxy'],\n dict(help=\"create proxy for site\", nargs='+')),\n (['--experimental'],\n dict(help=\"Enable Experimenal packages without prompt\",\n action='store_true')),\n ]\n", "metadata": "root.EESiteCreateController", "header": "['module', '___EOS___']", "index": 324 }, { "content": " @expose(hide=True)\n def default(self):\n # self.app.render((data), 'default.mustache')\n # Check domain name validation\n data = dict()\n host, port = None, None\n try:\n stype, cache = detSitePar(vars(self.app.pargs))\n except RuntimeError as e:\n Log.debug(self, str(e))\n Log.error(self, \"Please provide valid options to creating site\")\n\n if stype is None and self.app.pargs.proxy:\n stype, cache = 'proxy', ''\n proxyinfo = self.app.pargs.proxy[0].strip()\n if not proxyinfo:\n Log.error(self, \"Please provide proxy server host information\")\n proxyinfo = proxyinfo.split(':')\n host = proxyinfo[0].strip()\n port = '80' if len(proxyinfo) < 2 else proxyinfo[1].strip()\n elif stype is None and not self.app.pargs.proxy:\n stype, cache = 'html', 'basic'\n elif stype and self.app.pargs.proxy:\n Log.error(self, \"proxy should not be used with other site types\")\n if (self.app.pargs.proxy and (self.app.pargs.pagespeed\n or self.app.pargs.hhvm)):\n Log.error(self, \"Proxy site can not run on pagespeed or hhvm\")\n\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n # preprocessing before finalize site name\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.debug(self, str(e))\n Log.error(self, \"Unable to input site name, Please try again!\")\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not ee_domain.strip():\n Log.error(\"Invalid domain name, \"\n \"Provide valid domain name\")\n\n ee_site_webroot = EEVariables.ee_webroot + ee_domain\n\n if check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} already exists\".format(ee_domain))\n elif os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.error(self, \"Nginx configuration /etc/nginx/sites-available/\"\n \"{0} already exists\".format(ee_domain))\n\n if stype == 'proxy':\n data['site_name'] = ee_domain\n data['www_domain'] = ee_www_domain\n data['proxy'] = True\n data['host'] = host\n data['port'] = port\n ee_site_webroot = \"\"\n\n if self.app.pargs.php7:\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=False, php7=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot)\n data['basic'] = True\n\n if stype in ['html', 'php' ]:\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=True, basic=False, php7=False, wp=False, w3tc=False,\n wpfc=False, wpsc=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot)\n\n if stype == 'php':\n data['static'] = False\n data['basic'] = True\n\n elif stype in ['mysql', 'wp', 'wpsubdir', 'wpsubdomain']:\n\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, wpredis=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot,\n ee_db_name='', ee_db_user='', ee_db_pass='',\n ee_db_host='')\n\n if stype in ['wp', 'wpsubdir', 'wpsubdomain']:\n data['wp'] = True\n data['basic'] = False\n data[cache] = True\n data['wp-user'] = self.app.pargs.user\n data['wp-email'] = self.app.pargs.email\n data['wp-pass'] = self.app.pargs.wppass\n if stype in ['wpsubdir', 'wpsubdomain']:\n data['multisite'] = True\n if stype == 'wpsubdir':\n data['wpsubdir'] = True\n else:\n pass\n\n if stype == \"html\" and self.app.pargs.hhvm:\n Log.error(self, \"Can not create HTML site with HHVM\")\n\n if data and self.app.pargs.php7:\n if (not self.app.pargs.experimental):\n Log.info(self, \"PHP7.0 is experimental feature and it may not \"\n \"work with all CSS/JS/Cache of your site.\\nDo you wish\"\n \" to install PHP 7.0 now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using PHP 7.0 for site.\")\n data['php7'] = False\n data['basic'] = True\n php7 = 0\n self.app.pargs.php7 = False\n else:\n data['php7'] = True\n php7 = 1\n else:\n data['php7'] = True\n php7 = 1\n elif data:\n data['php7'] = False\n php7 = 0\n\n if (not self.app.pargs.w3tc) and\\\n (not self.app.pargs.wpfc) and (not self.app.pargs.wpsc) and (not self.app.pargs.wpredis) \\\n and (not self.app.pargs.hhvm):\n data['basic'] = True\n\n #for debug purpose\n #for key, value in data.items() :\n # print (key, value)\n\n\n if data and self.app.pargs.hhvm:\n if (not self.app.pargs.experimental):\n Log.info(self, \"HHVM is experimental feature and it may not \"\n \"work with all plugins of your site.\\nYou can \"\n \"disable it by passing --hhvm=off later.\\nDo you wish\"\n \" to enable HHVM now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using HHVM for site.\")\n data['hhvm'] = False\n hhvm = 0\n self.app.pargs.hhvm = False\n else:\n data['hhvm'] = True\n hhvm = 1\n else:\n data['hhvm'] = True\n hhvm = 1\n\n elif data:\n data['hhvm'] = False\n hhvm = 0\n\n if data and self.app.pargs.pagespeed:\n if (not self.app.pargs.experimental):\n Log.info(self, \"PageSpeed is experimental feature and it may not \"\n \"work with all CSS/JS/Cache of your site.\\nYou can \"\n \"disable it by passing --pagespeed=off later.\\nDo you wish\"\n \" to enable PageSpeed now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using PageSpeed for site.\")\n data['pagespeed'] = False\n pagespeed = 0\n self.app.pargs.pagespeed = False\n else:\n data['pagespeed'] = True\n pagespeed = 1\n else:\n data['pagespeed'] = True\n pagespeed = 1\n elif data:\n data['pagespeed'] = False\n pagespeed = 0\n\n if (cache == 'wpredis' and (not self.app.pargs.experimental)):\n Log.info(self, \"Redis is experimental feature and it may not \"\n \"work with all CSS/JS/Cache of your site.\\nYou can \"\n \"disable it by changing cache later.\\nDo you wish\"\n \" to enable Redis now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.error(self, \"Not using Redis for site\")\n cache = 'basic'\n data['wpredis'] = False\n data['basic'] = True\n self.app.pargs.wpredis = False\n\n # self.app.args.print_help()\n # if not data:\n # self.app.close(1)\n\n # Check rerequired packages are installed or not\n ee_auth = site_package_check(self, stype)\n\n try:\n pre_run_checks(self)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.error(self, \"NGINX configuration check failed.\")\n\n try:\n try:\n # setup NGINX configuration, and webroot\n setupdomain(self, data)\n\n # Fix Nginx Hashbucket size error\n hashbucket(self)\n except SiteError as e:\n # call cleanup actions on failure\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'])\n Log.debug(self, str(e))\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n if 'proxy' in data.keys() and data['proxy']:\n addNewSite(self, ee_domain, stype, cache, ee_site_webroot)\n # Service Nginx Reload\n if not EEService.reload_service(self, 'nginx'):\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain)\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n if ee_auth and len(ee_auth):\n for msg in ee_auth:\n Log.info(self, Log.ENDC + msg, log=False)\n Log.info(self, \"Successfully created site\"\n \" http://{0}\".format(ee_domain))\n return\n # Update pagespeed config\n if self.app.pargs.pagespeed:\n operateOnPagespeed(self, data)\n\n if data['php7']:\n php_version = \"7.0\"\n else:\n php_version = \"5.6\"\n\n\n addNewSite(self, ee_domain, stype, cache, ee_site_webroot,\n hhvm=hhvm, pagespeed=pagespeed, php_version=php_version)\n\n # Setup database for MySQL site\n if 'ee_db_name' in data.keys() and not data['wp']:\n try:\n data = setupdatabase(self, data)\n # Add database information for site into database\n updateSiteInfo(self, ee_domain, db_name=data['ee_db_name'],\n db_user=data['ee_db_user'],\n db_password=data['ee_db_pass'],\n db_host=data['ee_db_host'])\n except SiteError as e:\n # call cleanup actions on failure\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'],\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_db_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n try:\n eedbconfig = open(\"{0}/ee-config.php\"\n .format(ee_site_webroot),\n encoding='utf-8', mode='w')\n eedbconfig.write(\"<?php \\ndefine('DB_NAME', '{0}');\"\n \"\\ndefine('DB_USER', '{1}'); \"\n \"\\ndefine('DB_PASSWORD', '{2}');\"\n \"\\ndefine('DB_HOST', '{3}');\\n?>\"\n .format(data['ee_db_name'],\n data['ee_db_user'],\n data['ee_db_pass'],\n data['ee_db_host']))\n eedbconfig.close()\n stype = 'mysql'\n except IOError as e:\n Log.debug(self, str(e))\n Log.debug(self, \"Error occured while generating \"\n \"ee-config.php\")\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'],\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_db_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n # Setup WordPress if Wordpress site\n if data['wp']:\n try:\n ee_wp_creds = setupwordpress(self, data)\n # Add database information for site into database\n updateSiteInfo(self, ee_domain, db_name=data['ee_db_name'],\n db_user=data['ee_db_user'],\n db_password=data['ee_db_pass'],\n db_host=data['ee_db_host'])\n except SiteError as e:\n # call cleanup actions on failure\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'],\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_mysql_grant_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n # Service Nginx Reload call cleanup if failed to reload nginx\n if not EEService.reload_service(self, 'nginx'):\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'])\n if 'ee_db_name' in data.keys():\n doCleanupAction(self, domain=ee_domain,\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_mysql_grant_host'])\n deleteSiteInfo(self, ee_domain)\n Log.info(self, Log.FAIL + \"service nginx reload failed.\"\n \" check issues with `nginx -t` command.\")\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"{0} created with {1} {2}\"\n .format(ee_www_domain, stype, cache))\n # Setup Permissions for webroot\n try:\n setwebrootpermissions(self, data['webroot'])\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'])\n if 'ee_db_name' in data.keys():\n print(\"Inside db cleanup\")\n doCleanupAction(self, domain=ee_domain,\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_mysql_grant_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n if ee_auth and len(ee_auth):\n for msg in ee_auth:\n Log.info(self, Log.ENDC + msg, log=False)\n\n if data['wp']:\n Log.info(self, Log.ENDC + \"WordPress admin user :\"\n \" {0}\".format(ee_wp_creds['wp_user']), log=False)\n Log.info(self, Log.ENDC + \"WordPress admin user password : {0}\"\n .format(ee_wp_creds['wp_pass']), log=False)\n\n display_cache_settings(self, data)\n\n Log.info(self, \"Successfully created site\"\n \" http://{0}\".format(ee_domain))\n except SiteError as e:\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n if self.app.pargs.letsencrypt :\n if (not self.app.pargs.experimental):\n if stype in ['wpsubdomain']:\n\t Log.warn(self, \"Wildcard domains are not supported in Lets Encrypt.\\nWP SUBDOMAIN site will get SSL for primary site only.\")\n\n Log.info(self, \"Letsencrypt is currently in beta phase.\"\n \" \\nDo you wish\"\n \" to enable SSl now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n data['letsencrypt'] = False\n letsencrypt = False\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n\n if data['letsencrypt'] is True:\n setupLetsEncrypt(self, ee_domain)\n httpsRedirect(self,ee_domain)\n Log.info(self,\"Creating Cron Job for cert auto-renewal\")\n EECron.setcron_weekly(self,'ee site update --le=renew --all 2> /dev/null'.format(ee_domain),'Renew all'\n ' letsencrypt SSL cert. Set by EasyEngine')\n\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n Log.info(self, \"Congratulations! Successfully Configured SSl for Site \"\n \" https://{0}\".format(ee_domain))\n\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n else:\n Log.warn(self, \"Your cert already EXPIRED ! .PLEASE renew soon . \")\n\n # Add nginx conf folder into GIT\n EEGit.add(self, [\"{0}/conf/nginx\".format(ee_site_webroot)],\n msg=\"Adding letsencrypts config of site: {0}\"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, ssl=letsencrypt)\n\n elif data['letsencrypt'] is False:\n Log.info(self, \"Not using Let\\'s encrypt for Site \"\n \" http://{0}\".format(ee_domain))", "metadata": "root.EESiteCreateController.default", "header": "['class', 'EESiteCreateController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 384 }, { "content": "class EESiteUpdateController(CementBaseController):\n class Meta:\n label = 'update'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = ('This command updates websites configuration to '\n 'another as per the options are provided')\n arguments = [\n (['site_name'],\n dict(help='domain name for the site to be updated',\n nargs='?')),\n (['--password'],\n dict(help=\"update to password for wordpress site user\",\n action='store_true')),\n (['--html'],\n dict(help=\"update to html site\", action='store_true')),\n (['--php'],\n dict(help=\"update to php site\", action='store_true')),\n (['--php7'],\n dict(help=\"update to php7 site\",\n action='store' or 'store_const',\n choices=('on', 'off'), const='on', nargs='?')),\n (['--mysql'],\n dict(help=\"update to mysql site\", action='store_true')),\n (['--wp'],\n dict(help=\"update to wordpress single site\",\n action='store_true')),\n (['--wpsubdir'],\n dict(help=\"update to wpsubdir site\", action='store_true')),\n (['--wpsubdomain'],\n dict(help=\"update to wpsubdomain site\", action='store_true')),\n (['--w3tc'],\n dict(help=\"update to w3tc cache\", action='store_true')),\n (['--wpfc'],\n dict(help=\"update to wpfc cache\", action='store_true')),\n (['--wpsc'],\n dict(help=\"update to wpsc cache\", action='store_true')),\n (['--wpredis'],\n dict(help=\"update to redis cache\", action='store_true')),\n (['--hhvm'],\n dict(help='Use HHVM for site',\n action='store' or 'store_const',\n choices=('on', 'off'), const='on', nargs='?')),\n (['--pagespeed'],\n dict(help='Use PageSpeed for site',\n action='store' or 'store_const',\n choices=('on', 'off'), const='on', nargs='?')),\n (['-le','--letsencrypt'],\n dict(help=\"configure letsencrypt ssl for the site\",\n action='store' or 'store_const',\n choices=('on', 'off', 'renew'), const='on', nargs='?')),\n (['--proxy'],\n dict(help=\"update to proxy site\", nargs='+')),\n (['--experimental'],\n dict(help=\"Enable Experimenal packages without prompt\",\n action='store_true')),\n (['--all'],\n dict(help=\"update all sites\", action='store_true')),\n ]\n\n", "metadata": "root.EESiteUpdateController", "header": "['module', '___EOS___']", "index": 833 }, { "content": " @expose(help=\"Update site type or cache\")\n def default(self):\n pargs = self.app.pargs\n\n if pargs.all:\n if pargs.site_name:\n Log.error(self, \"`--all` option cannot be used with site name\"\n \" provided\")\n if pargs.html:\n Log.error(self, \"No site can be updated to html\")\n\n if not (pargs.php or pargs.php7 or\n pargs.mysql or pargs.wp or pargs.wpsubdir or\n pargs.wpsubdomain or pargs.w3tc or pargs.wpfc or\n pargs.wpsc or pargs.hhvm or pargs.pagespeed or pargs.wpredis or pargs.letsencrypt):\n Log.error(self, \"Please provide options to update sites.\")\n\n if pargs.all:\n if pargs.site_name:\n Log.error(self, \"`--all` option cannot be used with site name\"\n \" provided\")\n\n sites = getAllsites(self)\n if not sites:\n pass\n else:\n for site in sites:\n pargs.site_name = site.sitename\n Log.info(self, Log.ENDC + Log.BOLD + \"Updating site {0},\"\n \" please wait...\"\n .format(pargs.site_name))\n self.doupdatesite(pargs)\n print(\"\\n\")\n else:\n self.doupdatesite(pargs)", "metadata": "root.EESiteUpdateController.default", "header": "['class', 'EESiteUpdateController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 893 }, { "content": " def doupdatesite(self, pargs):\n hhvm = None\n pagespeed = None\n letsencrypt = False\n php7 = None\n\n\n data = dict()\n try:\n stype, cache = detSitePar(vars(pargs))\n except RuntimeError as e:\n Log.debug(self, str(e))\n Log.error(self, \"Please provide valid options combination for\"\n \" site update\")\n\n if stype is None and pargs.proxy:\n stype, cache = 'proxy', ''\n proxyinfo = pargs.proxy[0].strip()\n if not proxyinfo:\n Log.error(self, \"Please provide proxy server host information\")\n proxyinfo = proxyinfo.split(':')\n host = proxyinfo[0].strip()\n port = '80' if len(proxyinfo) < 2 else proxyinfo[1].strip()\n elif stype is None and not (pargs.proxy or pargs.letsencrypt):\n stype, cache = 'html', 'basic'\n elif stype and pargs.proxy:\n Log.error(self, \"--proxy can not be used with other site types\")\n if (pargs.proxy and (pargs.pagespeed or pargs.hhvm)):\n Log.error(self, \"Proxy site can not run on pagespeed or hhvm\")\n\n if not pargs.site_name:\n try:\n while not pargs.site_name:\n pargs.site_name = (input('Enter site name : ').strip())\n except IOError as e:\n Log.error(self, 'Unable to input site name, Please try again!')\n\n pargs.site_name = pargs.site_name.strip()\n (ee_domain,\n ee_www_domain, ) = ValidateDomain(pargs.site_name)\n ee_site_webroot = EEVariables.ee_webroot + ee_domain\n\n check_site = getSiteInfo(self, ee_domain)\n\n if check_site is None:\n Log.error(self, \" Site {0} does not exist.\".format(ee_domain))\n else:\n oldsitetype = check_site.site_type\n oldcachetype = check_site.cache_type\n old_hhvm = check_site.is_hhvm\n old_pagespeed = check_site.is_pagespeed\n check_ssl = check_site.is_ssl\n check_php_version = check_site.php_version\n\n if check_php_version == \"7.0\":\n old_php7 = True\n else:\n old_php7 = False\n\n if (pargs.password and not (pargs.html or\n pargs.php or pargs.php7 or pargs.mysql or pargs.wp or\n pargs.w3tc or pargs.wpfc or pargs.wpsc\n or pargs.wpsubdir or pargs.wpsubdomain)):\n try:\n updatewpuserpassword(self, ee_domain, ee_site_webroot)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, \"\\nPassword Unchanged.\")\n return 0\n\n if ((stype == \"proxy\" and stype == oldsitetype and self.app.pargs.hhvm)\n or (stype == \"proxy\" and\n stype == oldsitetype and self.app.pargs.pagespeed)):\n Log.info(self, Log.FAIL +\n \"Can not update proxy site to HHVM or Pagespeed\")\n return 1\n if stype == \"html\" and stype == oldsitetype and self.app.pargs.hhvm:\n Log.info(self, Log.FAIL + \"Can not update HTML site to HHVM\")\n return 1\n\n if ((stype == 'php' and oldsitetype not in ['html', 'proxy', 'php7']) or\n # (stype == 'php7' and oldsitetype not in ['html', 'mysql', 'php', 'php7', 'wp', 'wpsubdir', 'wpsubdomain', ]) or\n (stype == 'mysql' and oldsitetype not in ['html', 'php',\n 'proxy','php7']) or\n (stype == 'wp' and oldsitetype not in ['html', 'php', 'mysql',\n 'proxy', 'wp', 'php7']) or\n (stype == 'wpsubdir' and oldsitetype in ['wpsubdomain']) or\n (stype == 'wpsubdomain' and oldsitetype in ['wpsubdir']) or\n (stype == oldsitetype and cache == oldcachetype) and\n not (pargs.pagespeed or pargs.php7)):\n Log.info(self, Log.FAIL + \"can not update {0} {1} to {2} {3}\".\n format(oldsitetype, oldcachetype, stype, cache))\n return 1\n\n if stype == 'proxy':\n data['site_name'] = ee_domain\n data['www_domain'] = ee_www_domain\n data['proxy'] = True\n data['host'] = host\n data['port'] = port\n pagespeed = False\n hhvm = False\n data['webroot'] = ee_site_webroot\n data['currsitetype'] = oldsitetype\n data['currcachetype'] = oldcachetype\n\n if stype == 'php':\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, wpredis=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot,\n currsitetype=oldsitetype, currcachetype=oldcachetype)\n\n elif stype in ['mysql', 'wp', 'wpsubdir', 'wpsubdomain']:\n\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, wpredis=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot,\n ee_db_name='', ee_db_user='', ee_db_pass='',\n ee_db_host='',\n currsitetype=oldsitetype, currcachetype=oldcachetype)\n\n if stype in ['wp', 'wpsubdir', 'wpsubdomain']:\n data['wp'] = True\n data['basic'] = False\n data[cache] = True\n if stype in ['wpsubdir', 'wpsubdomain']:\n data['multisite'] = True\n if stype == 'wpsubdir':\n data['wpsubdir'] = True\n\n if pargs.pagespeed or pargs.hhvm or pargs.php7:\n if not data:\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n currsitetype=oldsitetype,\n currcachetype=oldcachetype,\n webroot=ee_site_webroot)\n stype = oldsitetype\n cache = oldcachetype\n if oldsitetype == 'html' or oldsitetype == 'proxy':\n data['static'] = True\n data['wp'] = False\n data['multisite'] = False\n data['wpsubdir'] = False\n elif oldsitetype == 'php' or oldsitetype == 'mysql':\n data['static'] = False\n data['wp'] = False\n data['multisite'] = False\n data['wpsubdir'] = False\n elif oldsitetype == 'wp':\n data['static'] = False\n data['wp'] = True\n data['multisite'] = False\n data['wpsubdir'] = False\n elif oldsitetype == 'wpsubdir':\n data['static'] = False\n data['wp'] = True\n data['multisite'] = True\n data['wpsubdir'] = True\n elif oldsitetype == 'wpsubdomain':\n data['static'] = False\n data['wp'] = True\n data['multisite'] = True\n data['wpsubdir'] = False\n\n if oldcachetype == 'basic':\n data['basic'] = True\n data['w3tc'] = False\n data['wpfc'] = False\n data['wpsc'] = False\n data['wpredis'] = False\n elif oldcachetype == 'w3tc':\n data['basic'] = False\n data['w3tc'] = True\n data['wpfc'] = False\n data['wpsc'] = False\n data['wpredis'] = False\n elif oldcachetype == 'wpfc':\n data['basic'] = False\n data['w3tc'] = False\n data['wpfc'] = True\n data['wpsc'] = False\n data['wpredis'] = False\n elif oldcachetype == 'wpsc':\n data['basic'] = False\n data['w3tc'] = False\n data['wpfc'] = False\n data['wpsc'] = True\n data['wpredis'] = False\n elif oldcachetype == 'wpredis':\n data['basic'] = False\n data['w3tc'] = False\n data['wpfc'] = False\n data['wpsc'] = False\n data['wpredis'] = True\n\n if pargs.hhvm != 'off':\n data['hhvm'] = True\n hhvm = True\n elif pargs.hhvm == 'off':\n data['hhvm'] = False\n hhvm = False\n\n if pargs.pagespeed != 'off':\n data['pagespeed'] = True\n pagespeed = True\n elif pargs.pagespeed == 'off':\n data['pagespeed'] = False\n pagespeed = False\n\n if pargs.php7 == 'on' :\n data['php7'] = True\n php7 = True\n check_php_version= '7.0'\n elif pargs.php7 == 'off':\n data['php7'] = False\n php7 = False\n check_php_version = '5.6'\n\n if pargs.pagespeed:\n if pagespeed is old_pagespeed:\n if pagespeed is False:\n Log.info(self, \"Pagespeed is already disabled for given \"\n \"site\")\n elif pagespeed is True:\n Log.info(self, \"Pagespeed is already enabled for given \"\n \"site\")\n pargs.pagespeed = False\n\n if pargs.php7:\n if php7 is old_php7:\n if php7 is False:\n Log.info(self, \"PHP 7.0 is already disabled for given \"\n \"site\")\n elif php7 is True:\n Log.info(self, \"PHP 7.0 is already enabled for given \"\n \"site\")\n pargs.php7 = False\n\n #--letsencrypt=renew code goes here\n if pargs.letsencrypt == \"renew\" and not pargs.all:\n expiry_days = SSL.getExpirationDays(self,ee_domain)\n min_expiry_days = 30\n if check_ssl:\n if (expiry_days <= min_expiry_days):\n renewLetsEncrypt(self,ee_domain)\n else:\n Log.error(self,\"More than 30 days left for certificate Expiry. Not renewing now.\")\n\n else:\n Log.error(self,\"Cannot RENEW ! SSL is not configured for given site .\")\n\n Log.info(self, \"SUCCESS: Certificate was successfully renewed For\"\n \" https://{0}\".format(ee_domain))\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n Log.info(self, \"Expiration DATE: \" + str(SSL.getExpirationDate(self,ee_domain)))\n\n else:\n Log.warn(self, \"Your cert already EXPIRED !. PLEASE renew soon . \")\n\n if pargs.all and pargs.letsencrypt == \"renew\":\n\n if check_ssl:\n expiry_days = SSL.getExpirationDays(self,ee_domain,True)\n if expiry_days < 0:\n return 0\n min_expiry_days = 30\n if (expiry_days <= min_expiry_days):\n renewLetsEncrypt(self,ee_domain)\n Log.info(self, \"SUCCESS: Certificate was successfully renewed For\"\n \" https://{0}\".format(ee_domain))\n else:\n Log.info(self,\"More than 60 days left for certificate Expiry. Not renewing now.\\n\")\n\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n Log.info(self, \"Expiration DATE: \\n\\n\" + str(SSL.getExpirationDate(self,ee_domain)))\n return 0\n #else:\n # Log.warn(self, \"Your cert already EXPIRED ! .PLEASE renew soon . \")\n else:\n Log.info(self,\"SSL not configured for site http://{0}\".format(ee_domain))\n return 0\n\n if pargs.all and pargs.letsencrypt == \"off\":\n if letsencrypt is check_ssl:\n if letsencrypt is False:\n Log.error(self, \"SSl is not configured for given \"\n \"site\",False)\n return 0\n\n if pargs.letsencrypt:\n if pargs.letsencrypt == 'on':\n data['letsencrypt'] = True\n letsencrypt = True\n elif pargs.letsencrypt == 'off':\n data['letsencrypt'] = False\n letsencrypt = False\n\n if letsencrypt is check_ssl:\n if letsencrypt is False:\n Log.error(self, \"SSl is not configured for given \"\n \"site\")\n elif letsencrypt is True:\n Log.error(self, \"SSl is already configured for given \"\n \"site\")\n pargs.letsencrypt = False\n\n if pargs.hhvm:\n if hhvm is old_hhvm:\n if hhvm is False:\n Log.info(self, \"HHVM is allready disabled for given \"\n \"site\")\n elif hhvm is True:\n Log.info(self, \"HHVM is allready enabled for given \"\n \"site\")\n\n pargs.hhvm = False\n\n if data and (not pargs.hhvm):\n if old_hhvm is True:\n data['hhvm'] = True\n hhvm = True\n else:\n data['hhvm'] = False\n hhvm = False\n\n if data and (not pargs.pagespeed):\n if old_pagespeed is True:\n data['pagespeed'] = True\n pagespeed = True\n else:\n data['pagespeed'] = False\n pagespeed = False\n\n if data and (not pargs.php7):\n if old_php7 is True:\n data['php7'] = True\n php7 = True\n else:\n data['php7'] = False\n php7 = False\n\n if pargs.pagespeed==\"on\" or pargs.hhvm==\"on\" or pargs.letsencrypt==\"on\" or pargs.php7==\"on\":\n if pargs.php7 == \"on\":\n if (not pargs.experimental):\n Log.info(self, \"PHP7.0 is experimental feature and it may not\"\n \" work with all plugins of your site.\\nYou can \"\n \"disable it by passing --php7=off later.\\nDo you wish\"\n \" to enable PHP now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using PHP 7.0 for site\")\n data['php7'] = False\n php7 = False\n else:\n data['php7'] = True\n php7 = True\n else:\n data['php7'] = True\n php7 = True\n\n if pargs.hhvm == \"on\":\n if (not pargs.experimental):\n Log.info(self, \"HHVM is experimental feature and it may not\"\n \" work with all plugins of your site.\\nYou can \"\n \"disable it by passing --hhvm=off later.\\nDo you wish\"\n \" to enable HHVM now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using HHVM for site\")\n data['hhvm'] = False\n hhvm = False\n else:\n data['hhvm'] = True\n hhvm = True\n else:\n data['hhvm'] = True\n hhvm = True\n\n if pargs.pagespeed==\"on\":\n if (not pargs.experimental):\n Log.info(self, \"PageSpeed is experimental feature and it may not\"\n \" work with all CSS/JS/Cache of your site.\\nYou can \"\n \"disable it by passing --pagespeed=off later.\\nDo you wish\"\n \" to enable PageSpeed now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using Pagespeed for given site\")\n data['pagespeed'] = False\n pagespeed = False\n else:\n data['pagespeed'] = True\n pagespeed = True\n else:\n data['pagespeed'] = True\n pagespeed = True\n\n if pargs.letsencrypt == \"on\":\n\n if (not pargs.experimental):\n\n if oldsitetype in ['wpsubdomain']:\n\t Log.warn(self, \"Wildcard domains are not supported in Lets Encrypt.\\nWP SUBDOMAIN site will get SSL for primary site only.\")\n\n Log.info(self, \"Letsencrypt is currently in beta phase.\"\n \" \\nDo you wish\"\n \" to enable SSl now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using letsencrypt for site\")\n data['letsencrypt'] = False\n letsencrypt = False\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n\n\n\n if pargs.wpredis and data['currcachetype'] != 'wpredis':\n if (not pargs.experimental):\n Log.info(self, \"Redis is experimental feature and it may not\"\n \" work with all plugins of your site.\\nYou can \"\n \"disable it by changing cache type later.\\nDo you wish\"\n \" to enable Redis now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]: \")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.error(self, \"Not using Redis for site\")\n data['wpredis'] = False\n data['basic'] = True\n cache = 'basic'\n\n if ((hhvm is old_hhvm) and (pagespeed is old_pagespeed) and (php7 is old_php7) and\n (stype == oldsitetype and cache == oldcachetype)):\n return 1\n\n if not data:\n Log.error(self, \"Cannot update {0}, Invalid Options\"\n .format(ee_domain))\n\n ee_auth = site_package_check(self, stype)\n data['ee_db_name'] = check_site.db_name\n data['ee_db_user'] = check_site.db_user\n data['ee_db_pass'] = check_site.db_password\n data['ee_db_host'] = check_site.db_host\n data['old_pagespeed_status'] = check_site.is_pagespeed\n\n if not pargs.letsencrypt:\n try:\n pre_run_checks(self)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.error(self, \"NGINX configuration check failed.\")\n\n try:\n sitebackup(self, data)\n except Exception as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # setup NGINX configuration, and webroot\n try:\n setupdomain(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if 'proxy' in data.keys() and data['proxy']:\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n hhvm=hhvm, pagespeed=pagespeed,ssl=True if check_site.is_ssl else False)\n Log.info(self, \"Successfully updated site\"\n \" http://{0}\".format(ee_domain))\n return 0\n\n # Update pagespeed config\n if pargs.pagespeed:\n operateOnPagespeed(self, data)\n\n if pargs.letsencrypt:\n if data['letsencrypt'] is True:\n if not os.path.isfile(\"{0}/conf/nginx/ssl.conf.disabled\"\n .format(ee_site_webroot)):\n setupLetsEncrypt(self, ee_domain)\n\n else:\n EEFileUtils.mvfile(self, \"{0}/conf/nginx/ssl.conf.disabled\"\n .format(ee_site_webroot),\n '{0}/conf/nginx/ssl.conf'\n .format(ee_site_webroot))\n\n httpsRedirect(self,ee_domain)\n Log.info(self,\"Creating Cron Job for cert auto-renewal\")\n EECron.setcron_weekly(self,'ee site update --le=renew --all 2> /dev/null'.format(ee_domain),'Renew all'\n ' letsencrypt SSL cert. Set by EasyEngine')\n\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n Log.info(self, \"Congratulations! Successfully Configured SSl for Site \"\n \" https://{0}\".format(ee_domain))\n\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n else:\n Log.warn(self, \"Your cert already EXPIRED ! .PLEASE renew soon . \")\n\n elif data['letsencrypt'] is False:\n if os.path.isfile(\"{0}/conf/nginx/ssl.conf\"\n .format(ee_site_webroot)):\n Log.info(self,'Setting Nginx configuration')\n EEFileUtils.mvfile(self, \"{0}/conf/nginx/ssl.conf\"\n .format(ee_site_webroot),\n '{0}/conf/nginx/ssl.conf.disabled'\n .format(ee_site_webroot))\n httpsRedirect(self,ee_domain,False)\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n #Log.info(self,\"Removing Cron Job set for cert auto-renewal\")\n #EECron.remove_cron(self,'ee site update {0} --le=renew --min_expiry_limit 30 2> \\/dev\\/null'.format(ee_domain))\n Log.info(self, \"Successfully Disabled SSl for Site \"\n \" http://{0}\".format(ee_domain))\n\n\n # Add nginx conf folder into GIT\n EEGit.add(self, [\"{0}/conf/nginx\".format(ee_site_webroot)],\n msg=\"Adding letsencrypts config of site: {0}\"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, ssl=letsencrypt)\n return 0\n\n if stype == oldsitetype and cache == oldcachetype:\n\n # Service Nginx Reload\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n hhvm=hhvm, pagespeed=pagespeed,ssl=True if check_site.is_ssl else False, php_version=check_php_version)\n\n Log.info(self, \"Successfully updated site\"\n \" http://{0}\".format(ee_domain))\n return 0\n\n #if data['ee_db_name'] and not data['wp']:\n if 'ee_db_name' in data.keys() and not data['wp']:\n try:\n data = setupdatabase(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n try:\n eedbconfig = open(\"{0}/ee-config.php\".format(ee_site_webroot),\n encoding='utf-8', mode='w')\n eedbconfig.write(\"<?php \\ndefine('DB_NAME', '{0}');\"\n \"\\ndefine('DB_USER', '{1}'); \"\n \"\\ndefine('DB_PASSWORD', '{2}');\"\n \"\\ndefine('DB_HOST', '{3}');\\n?>\"\n .format(data['ee_db_name'],\n data['ee_db_user'],\n data['ee_db_pass'],\n data['ee_db_host']))\n eedbconfig.close()\n except IOError as e:\n Log.debug(self, str(e))\n Log.debug(self, \"creating ee-config.php failed.\")\n Log.info(self, Log.FAIL + \"Update site failed. \"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # Setup WordPress if old sites are html/php/mysql sites\n if data['wp'] and oldsitetype in ['html', 'proxy', 'php', 'mysql']:\n try:\n ee_wp_creds = setupwordpress(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # Uninstall unnecessary plugins\n if oldsitetype in ['wp', 'wpsubdir', 'wpsubdomain']:\n # Setup WordPress Network if update option is multisite\n # and oldsite is WordPress single site\n if data['multisite'] and oldsitetype == 'wp':\n try:\n setupwordpressnetwork(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if (oldcachetype == 'w3tc' or oldcachetype == 'wpfc' and\n not (data['w3tc'] or data['wpfc'])):\n try:\n uninstallwp_plugin(self, 'w3-total-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if ((oldcachetype in ['w3tc', 'wpsc', 'basic', 'wpredis'] and\n (data['wpfc'])) or (oldsitetype == 'wp' and data['multisite'] and data['wpfc'])):\n try:\n plugin_data = '{\"log_level\":\"INFO\",\"log_filesize\":5,\"enable_purge\":1,\"enable_map\":0,\"enable_log\":0,\"enable_stamp\":0,\"purge_homepage_on_new\":1,\"purge_homepage_on_edit\":1,\"purge_homepage_on_del\":1,\"purge_archive_on_new\":1,\"purge_archive_on_edit\":0,\"purge_archive_on_del\":0,\"purge_archive_on_new_comment\":0,\"purge_archive_on_deleted_comment\":0,\"purge_page_on_mod\":1,\"purge_page_on_new_comment\":1,\"purge_page_on_deleted_comment\":1,\"cache_method\":\"enable_fastcgi\",\"purge_method\":\"get_request\",\"redis_hostname\":\"127.0.0.1\",\"redis_port\":\"6379\",\"redis_prefix\":\"nginx-cache:\"}'\n setupwp_plugin(self, 'nginx-helper', 'rt_wp_nginx_helper_options', plugin_data, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update nginx-helper settings failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n elif ((oldcachetype in ['w3tc', 'wpsc', 'basic', 'wpfc'] and\n (data['wpredis'])) or (oldsitetype == 'wp' and data['multisite'] and data['wpredis'])):\n try:\n plugin_data = '{\"log_level\":\"INFO\",\"log_filesize\":5,\"enable_purge\":1,\"enable_map\":0,\"enable_log\":0,\"enable_stamp\":0,\"purge_homepage_on_new\":1,\"purge_homepage_on_edit\":1,\"purge_homepage_on_del\":1,\"purge_archive_on_new\":1,\"purge_archive_on_edit\":0,\"purge_archive_on_del\":0,\"purge_archive_on_new_comment\":0,\"purge_archive_on_deleted_comment\":0,\"purge_page_on_mod\":1,\"purge_page_on_new_comment\":1,\"purge_page_on_deleted_comment\":1,\"cache_method\":\"enable_redis\",\"purge_method\":\"get_request\",\"redis_hostname\":\"127.0.0.1\",\"redis_port\":\"6379\",\"redis_prefix\":\"nginx-cache:\"}'\n setupwp_plugin(self, 'nginx-helper', 'rt_wp_nginx_helper_options', plugin_data, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update nginx-helper settings failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n else:\n try:\n plugin_data = '{\"log_level\":\"INFO\",\"log_filesize\":5,\"enable_purge\":0,\"enable_map\":0,\"enable_log\":0,\"enable_stamp\":0,\"purge_homepage_on_new\":1,\"purge_homepage_on_edit\":1,\"purge_homepage_on_del\":1,\"purge_archive_on_new\":1,\"purge_archive_on_edit\":0,\"purge_archive_on_del\":0,\"purge_archive_on_new_comment\":0,\"purge_archive_on_deleted_comment\":0,\"purge_page_on_mod\":1,\"purge_page_on_new_comment\":1,\"purge_page_on_deleted_comment\":1,\"cache_method\":\"enable_redis\",\"purge_method\":\"get_request\",\"redis_hostname\":\"127.0.0.1\",\"redis_port\":\"6379\",\"redis_prefix\":\"nginx-cache:\"}'\n setupwp_plugin(self, 'nginx-helper', 'rt_wp_nginx_helper_options', plugin_data, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update nginx-helper settings failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype == 'wpsc' and not data['wpsc']:\n try:\n uninstallwp_plugin(self, 'wp-super-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype == 'wpredis' and not data['wpredis']:\n try:\n uninstallwp_plugin(self, 'redis-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if (oldcachetype != 'w3tc' or oldcachetype != 'wpfc') and (data['w3tc']\n or data['wpfc']):\n try:\n installwp_plugin(self, 'w3-total-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype != 'wpsc' and data['wpsc']:\n try:\n installwp_plugin(self, 'wp-super-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype != 'wpredis' and data['wpredis']:\n try:\n if installwp_plugin(self, 'redis-cache', data):\n #search for wp-config.php\n if EEFileUtils.isexist(self,\"{0}/wp-config.php\".format(ee_site_webroot)):\n config_path = '{0}/wp-config.php'.format(ee_site_webroot)\n elif EEFileUtils.isexist(self,\"{0}/htdocs/wp-config.php\".format(ee_site_webroot)):\n config_path = '{0}/htdocs/wp-config.php'.format(ee_site_webroot)\n else:\n Log.debug(self, \"Updating wp-config.php failed. File could not be located.\")\n Log.error(self,\"wp-config.php could not be located !!\")\n raise SiteError\n\n if EEShellExec.cmd_exec(self, \"grep -q \\\"WP_CACHE_KEY_SALT\\\" {0}\"\n .format(config_path)):\n pass\n else:\n try:\n wpconfig = open(\"{0}\".format(config_path),\n encoding='utf-8', mode='a')\n wpconfig.write(\"\\n\\ndefine( \\'WP_CACHE_KEY_SALT\\', \\'{0}:\\' );\"\n .format(ee_domain))\n wpconfig.close()\n except IOError as e:\n Log.debug(self, str(e))\n Log.debug(self, \"Updating wp-config.php failed.\")\n Log.warn(self, \"Updating wp-config.php failed. \"\n \"Could not append:\"\n \"\\ndefine( \\'WP_CACHE_KEY_SALT\\', \\'{0}:\\' );\".format(ee_domain) +\n \"\\nPlease add manually\")\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # Service Nginx Reload\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"{0} updated with {1} {2}\"\n .format(ee_www_domain, stype, cache))\n # Setup Permissions for webroot\n try:\n setwebrootpermissions(self, data['webroot'])\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if ee_auth and len(ee_auth):\n for msg in ee_auth:\n Log.info(self, Log.ENDC + msg)\n\n display_cache_settings(self, data)\n if data['wp'] and oldsitetype in ['html', 'php', 'mysql']:\n Log.info(self, \"\\n\\n\" + Log.ENDC + \"WordPress admin user :\"\n \" {0}\".format(ee_wp_creds['wp_user']))\n Log.info(self, Log.ENDC + \"WordPress admin password : {0}\"\n .format(ee_wp_creds['wp_pass']) + \"\\n\\n\")\n if oldsitetype in ['html', 'php'] and stype != 'php':\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n db_name=data['ee_db_name'],\n db_user=data['ee_db_user'],\n db_password=data['ee_db_pass'],\n db_host=data['ee_db_host'], hhvm=hhvm,\n pagespeed=pagespeed,ssl=True if check_site.is_ssl else False,php_version=check_php_version)\n else:\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n hhvm=hhvm, pagespeed=pagespeed,ssl=True if check_site.is_ssl else False,php_version=check_php_version)\n Log.info(self, \"Successfully updated site\"\n \" http://{0}\".format(ee_domain))\n return 0", "metadata": "root.EESiteUpdateController.doupdatesite", "header": "['class', 'EESiteUpdateController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 929 }, { "content": "class EESiteDeleteController(CementBaseController):\n class Meta:\n label = 'delete'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = 'delete an existing website'\n arguments = [\n (['site_name'],\n dict(help='domain name to be deleted', nargs='?')),\n (['--no-prompt'],\n dict(help=\"doesnt ask permission for delete\",\n action='store_true')),\n (['-f','--force'],\n dict(help=\"forcefully delete site and configuration\",\n action='store_true')),\n (['--all'],\n dict(help=\"delete all\", action='store_true')),\n (['--db'],\n dict(help=\"delete db only\", action='store_true')),\n (['--files'],\n dict(help=\"delete webroot only\", action='store_true')),\n ]\n", "metadata": "root.EESiteDeleteController", "header": "['module', '___EOS___']", "index": 1716 }, { "content": " @expose(help=\"Delete website configuration and files\")\n @expose(hide=True)\n def default(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n ee_db_name = ''\n ee_prompt = ''\n ee_nginx_prompt = ''\n mark_db_delete_prompt = False\n mark_webroot_delete_prompt = False\n mark_db_deleted = False\n mark_webroot_deleted = False\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n if ((not self.app.pargs.db) and (not self.app.pargs.files) and\n (not self.app.pargs.all)):\n self.app.pargs.all = True\n\n # Gather information from ee-db for ee_domain\n check_site = getSiteInfo(self, ee_domain)\n ee_site_type = check_site.site_type\n ee_site_webroot = check_site.site_path\n if ee_site_webroot == 'deleted':\n mark_webroot_deleted = True\n if ee_site_type in ['mysql', 'wp', 'wpsubdir', 'wpsubdomain']:\n ee_db_name = check_site.db_name\n ee_db_user = check_site.db_user\n ee_mysql_grant_host = self.app.config.get('mysql', 'grant-host')\n if ee_db_name == 'deleted':\n mark_db_deleted = True\n if self.app.pargs.all:\n self.app.pargs.db = True\n self.app.pargs.files = True\n else:\n if self.app.pargs.all:\n mark_db_deleted = True\n self.app.pargs.files = True\n\n # Delete website database\n if self.app.pargs.db:\n if ee_db_name != 'deleted' and ee_db_name != '':\n if not self.app.pargs.no_prompt:\n ee_db_prompt = input('Are you sure, you want to delete'\n ' database [y/N]: ')\n else:\n ee_db_prompt = 'Y'\n mark_db_delete_prompt = True\n\n if ee_db_prompt == 'Y' or ee_db_prompt == 'y':\n mark_db_delete_prompt = True\n Log.info(self, \"Deleting Database, {0}, user {1}\"\n .format(ee_db_name, ee_db_user))\n deleteDB(self, ee_db_name, ee_db_user, ee_mysql_grant_host, False)\n updateSiteInfo(self, ee_domain,\n db_name='deleted',\n db_user='deleted',\n db_password='deleted')\n mark_db_deleted = True\n Log.info(self, \"Deleted Database successfully.\")\n else:\n mark_db_deleted = True\n Log.info(self, \"Does not seems to have database for this site.\"\n )\n\n # Delete webroot\n if self.app.pargs.files:\n if ee_site_webroot != 'deleted':\n if not self.app.pargs.no_prompt:\n ee_web_prompt = input('Are you sure, you want to delete '\n 'webroot [y/N]: ')\n else:\n ee_web_prompt = 'Y'\n mark_webroot_delete_prompt = True\n\n if ee_web_prompt == 'Y' or ee_web_prompt == 'y':\n mark_webroot_delete_prompt = True\n Log.info(self, \"Deleting Webroot, {0}\"\n .format(ee_site_webroot))\n deleteWebRoot(self, ee_site_webroot)\n updateSiteInfo(self, ee_domain, webroot='deleted')\n mark_webroot_deleted = True\n Log.info(self, \"Deleted webroot successfully\")\n else:\n mark_webroot_deleted = True\n Log.info(self, \"Webroot seems to be already deleted\")\n\n if not self.app.pargs.force:\n if (mark_webroot_deleted and mark_db_deleted):\n # TODO Delete nginx conf\n removeNginxConf(self, ee_domain)\n deleteSiteInfo(self, ee_domain)\n Log.info(self, \"Deleted site {0}\".format(ee_domain))\n # else:\n # Log.error(self, \" site {0} does not exists\".format(ee_domain))\n else:\n if (mark_db_delete_prompt or mark_webroot_delete_prompt or (mark_webroot_deleted and mark_db_deleted)):\n # TODO Delete nginx conf\n removeNginxConf(self, ee_domain)\n deleteSiteInfo(self, ee_domain)\n Log.info(self, \"Deleted site {0}\".format(ee_domain))", "metadata": "root.EESiteDeleteController.default", "header": "['class', 'EESiteDeleteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 1739 }, { "content": "class EESiteListController(CementBaseController):\n class Meta:\n label = 'list'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = 'List websites'\n arguments = [\n (['--enabled'],\n dict(help='List enabled websites', action='store_true')),\n (['--disabled'],\n dict(help=\"List disabled websites\", action='store_true')),\n ]\n", "metadata": "root.EESiteListController", "header": "['module', '___EOS___']", "index": 1850 }, { "content": " @expose(help=\"Lists websites\")\n def default(self):\n sites = getAllsites(self)\n if not sites:\n pass\n\n if self.app.pargs.enabled:\n for site in sites:\n if site.is_enabled:\n Log.info(self, \"{0}\".format(site.sitename))\n elif self.app.pargs.disabled:\n for site in sites:\n if not site.is_enabled:\n Log.info(self, \"{0}\".format(site.sitename))\n else:\n for site in sites:\n Log.info(self, \"{0}\".format(site.sitename))", "metadata": "root.EESiteListController.default", "header": "['class', 'EESiteListController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 1863 }, { "content": "def load(app):\n # register the plugin class.. this only happens if the plugin is enabled\n handler.register(EESiteController)\n handler.register(EESiteCreateController)\n handler.register(EESiteUpdateController)\n handler.register(EESiteDeleteController)\n handler.register(EESiteListController)\n handler.register(EESiteEditController)\n # register a hook (function) to run after arguments are parsed.\n hook.register('post_argument_parsing', ee_site_hook)", "metadata": "root.load", "header": "['module', '___EOS___']", "index": 1882 } ]	[ { "span": "from subprocess import Popen", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 28 }, { "span": "import sys", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 10 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "\"\"\"", "Eas", "y", "Engine", " ", "site", " ", "controlle", "r", ".\"\"\"_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "cem", "ent_", "._", "core_", "._", "controller_", "import_", "Ce", "ment", "Base", "Controller_", ",_", "expose_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "cem", "ent_", "._", "core_", "import_", "handler_", ",_", "hook_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "ee_", "._", "core_", "._", "cron_", "import_", "EE", "Cro", "n_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "ee_", "._", "core_", "._", "ssl", "utils_", "import_", "SSL_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "ee_", "._", "core_", "._", "variables_", "import_", "EE", "Variables_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "ee_", "._", "core_", "._", "domain", "validate_", "import_", 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Except block handles 'BaseException'	Esri/ops-server-config/SupportFiles/UtilitiesArcPy.py	[ { "content": "def uploadServiceDefinition(sdFilePath, agsPubConnectionFile, startService=True):\n success = True\n pymsg = \"\"\n \n try:\n if startService:\n startService = \"STARTED\"\n else:\n startService = \"STOPPED\"\n \n arcpy.UploadServiceDefinition_server(sdFilePath, agsPubConnectionFile, in_startupType=startService, in_cluster='default')\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.uploadServiceDefinition", "header": "['module', '___EOS___']", "index": 26 }, { "content": "def copyData(sourcePath, destinationPath, dataType=\"\"):\n success = True\n pymsg = \"\"\n \n try:\n if arcpy.Exists(destinationPath):\n print \"\\tWARNING: dataset already exists in destination: \" + destinationPath\n print \"\\tIf dataset is participating in a relationship, then might have been copied when parent was copied.\"\n else:\n arcpy.Copy_management(sourcePath, destinationPath)\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.copyData", "header": "['module', '___EOS___']", "index": 46 }, { "content": "def copyGDBData(sourceGDBPath, destinationGDBPath):\n success = True\n pymsg = \"\"\n printMsg = True\n debug = False\n \n try:\n #startTime = datetime.now()\n print '\\n{:<14}{:<100}'.format(\"Source:\", sourceGDBPath)\n print '{:<14}{:<100}\\n'.format(\"Destination:\", destinationGDBPath)\n \n # Verify input parameter types\n \n # Check out extensions\n print \"- Check out network license...\"\n if arcpy.CheckExtension(\"Network\") == \"Available\":\n arcpy.CheckOutExtension(\"Network\")\n else:\n # Raise a custom exception\n raise LicenseError\n \n descGDB = arcpy.Describe(sourceGDBPath)\n \n if debug:\n # Print some Describe Object properties\n if hasattr(descGDB, \"name\"):\n print \"Name: \" + descGDB.name\n if hasattr(descGDB, \"dataType\"):\n print \"DataType: \" + descGDB.dataType\n if hasattr(descGDB, \"catalogPath\"):\n print \"CatalogPath: \" + descGDB.catalogPath\n \n # Find children datasets\n datasets = []\n copyExcludeList = []\n for child in descGDB.children:\n if child.dataType != \"RelationshipClass\":\n datasets.append(child.name)\n else:\n descRel = arcpy.Describe(sourceGDBPath + \"/\" + child.name)\n for destClassName in descRel.destinationClassNames:\n copyExcludeList.append(destClassName)\n \n # Do not copy the datasets that are the destination datasets in\n # relationships since these datasets will automatically be\n # copied when the origin datasets are copied\n copyList = [dataset for dataset in datasets if dataset not in copyExcludeList]\n \n if debug:\n print \"\\nAll datasets (excluding relationship classes):\"\n print datasets\n print \"\\nDestination tables involved in relationship classes:\"\n print copyExcludeList\n print \"\\nCopy the following:\"\n print copyList\n \n if len(copyList) > 0:\n n = 1\n print \"- Copying database data...\"\n for dataset in copyList:\n srcPath = os.path.join(sourceGDBPath, dataset)\n destPath = os.path.join(destinationGDBPath, dataset)\n print \"\\tDataset: {} ({}/{})\".format(dataset, n, len(copyList))\n if arcpy.Exists(destPath):\n print \"\\t\\tWARNING: Will not copy dataset.\"\n print \"\\t\\tDataset already exists in destination: \" + destPath\n print \"\\t\\t(If dataset is participating in a relationship, then it was copied when origin dataset(s) was copied).\"\n else:\n print \"\\tCopying...\"\n results = copyData(srcPath, destPath)\n copySuccess = checkResults(results, printMsg)\n if not copySuccess:\n success = False\n n = n + 1\n else:\n print \"- No database data to copy.\"\n \n except LicenseError:\n success = False\n print \"ERROR: Network license is unavailable\"\n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n arcpy.CheckInExtension(\"Network\")\n # print '{:<14}{:%Y-%m-%d %H:%M:%S}'.format(\"Start time:\", startTime)\n # print '{:<14}{:%Y-%m-%d %H:%M:%S}'.format(\"End time:\", datetime.now())\n return [success, pymsg]", "metadata": "root.copyGDBData", "header": "['module', '___EOS___']", "index": 64 }, { "content": "def repairMosaicDatasetPaths(mosaicDatasetPath, pathsList):\n success = True\n pymsg = \"\"\n \n try:\n \n arcpy.RepairMosaicDatasetPaths_management(mosaicDatasetPath, pathsList)\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.repairMosaicDatasetPaths", "header": "['module', '___EOS___']", "index": 172 }, { "content": "def createAGSConnectionFile(agsConnFolderPath, agsConnFile, serverName,\n userName, passWord, port=6080, useSSL=False,\n connectionType=\"ADMINISTER_GIS_SERVICES\",\n serverType=\"ARCGIS_SERVER\",\n saveUserNamePassWord=\"SAVE_USERNAME\"):\n success = True\n pymsg = \"\"\n \n try:\n \n agsConnFilePath = agsConnFolderPath + os.sep + agsConnFile\n \n # Delete connection file if it already exists\n if os.path.exists(agsConnFilePath):\n os.remove(agsConnFilePath)\n \n # Build URL\n if useSSL:\n targetAGSURL = \"https\"\n else:\n targetAGSURL = \"http\"\n \n targetAGSURL = \"{}://{}\".format(targetAGSURL, serverName)\n \n if port:\n targetAGSURL = \"{}:{}\".format(targetAGSURL, port)\n \n targetAGSURL = \"{}/arcgis/admin\".format(targetAGSURL)\n \n # Create connection file\n arcpy.mapping.CreateGISServerConnectionFile(\n connectionType, agsConnFolderPath, agsConnFile,\n targetAGSURL, serverType, True, None, userName, passWord,\n saveUserNamePassWord)\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.createAGSConnectionFile", "header": "['module', '___EOS___']", "index": 187 } ]	[ { "span": "except:", "start_line": 38, "start_column": 4, 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Variable defined multiple times	sassoftware/conary/conary_test/clienttest/modelupdatetest.py	[ { "content": " @testhelp.context('sysmodel')\n def testRedirect(self):\n self.addComponent('bar:runtime=1.0', fileContents = [ '/bar:runtime'] )\n self.addCollection('bar=1.0', [ ':runtime'] )\n\n self.addComponent('redirect:runtime=1.0')\n self.addCollection('redirect=1.0', [ ':runtime'] )\n\n self.addComponent('foo:runtime=1.0', fileContents = [ '/foo:runtime'] )\n self.addCollection('foo=1.0', [ ':runtime' ])\n\n redirectRecipe = \"\\n\".join([\n 'class testRedirect(RedirectRecipe):',\n ' name = \"redirect\"',\n ' version = \"2.0\"',\n ' clearBuildReqs()',\n '',\n ' def setup(r):',\n ' r.addRedirect(\"foo\", \"localhost@rpl:linux\")' ])\n\n built, d = self.buildRecipe(redirectRecipe, \"testRedirect\")\n\n self._applyModel([ 'install redirect=2.0' ])\n self.verifyFile(self.rootDir + '/foo:runtime')\n\n redirectRecipe = \"\\n\".join([\n 'class testRedirect(RedirectRecipe):',\n ' name = \"foo\"',\n ' version = \"2.0\"',\n ' clearBuildReqs()',\n '',\n ' def setup(r):',\n ' r.addRedirect(\"bar\", \"localhost@rpl:linux\")' ])\n\n built, d = self.buildRecipe(redirectRecipe, \"testRedirect\")\n self._applyModel([ 'install redirect=2.0' ])\n self.verifyFile(self.rootDir + '/bar:runtime')\n\n redirectRecipe = \"\\n\".join([\n 'class testRedirect(RedirectRecipe):',\n ' name = \"bar\"',\n ' version = \"2.0\"',\n ' clearBuildReqs()',\n '',\n ' def setup(r):',\n ' r.addRedirect(\"redirect\",\"localhost@rpl:linux\")' ])\n built, d = self.buildRecipe(redirectRecipe, \"testRedirect\")\n\n self.assertRaisesRegexp(conaryclient.UpdateError,\n '^Redirect loop found which includes troves redirect, foo$',\n self._applyModel, [ 'install redirect=2.0' ])", "metadata": "root.ModelUpdateTest.testRedirect", "header": "['class', 'ModelUpdateTest', '(', 'rephelp', '.', 'RepositoryHelper', ')', ':', '___EOS___']", "index": 478 } ]	[ { "span": "built,", "start_line": 498, "start_column": 8, "end_line": 498, "end_column": 13 }, { "span": "d ", "start_line": 498, "start_column": 15, "end_line": 498, "end_column": 16 }, { "span": "built,", "start_line": 512, "start_column": 8, "end_line": 512, "end_column": 13 }, { "span": "d ", "start_line": 512, "start_column": 15, "end_line": 512, "end_column": 16 } ]	[ { "span": "built,", "start_line": 524, "start_column": 8, "end_line": 524, "end_column": 13 } ]	1	true	[ "[CLS]_", "Variable_", "defined_", "multiple_", "times_", "[SEP]_", "class_", "Model", "Update", "Test_", "(_", "rep", "help_", "._", "Repos", "itor", "y", "Helper_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "@_", "testh", "elp", "_", "._", "context_", "(_", "'", "sys", "model", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "test", "Redirect_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "add", "Component_", "(_", "'", "bar", ":", "runt", "ime", "=", 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An assert statement has a side-effect	ResilientScience/wot/tests/sequitur_tests.py	[ { "content": "def test_input3():\n assert sequitur.run(open(\"tests/data/69k\").read()) == open(\"tests/data/69k.out\").read()", "metadata": "root.test_input3", "header": "['module', '___EOS___']", "index": 24 } ]	[ { "span": "assert sequitur.run(open(\"tests/data/69k\").read()) == open(\"tests/data/69k.out\").read()", "start_line": 25, "start_column": 4, "end_line": 25, "end_column": 91 } ]	[]	1	true	[ "[CLS]_", "An", "_", "assert_", "statement_", "has_", "a_", "side_", "-_", "effect_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "input", "3_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "assert_", "seq", "uit", "ur_", "._", "run_", "(_", "open_", "(_", "\"", "tests", "/", "data", "/", "6", "9", "k", "\"_", ")_", "._", "read_", "(_", ")_", ")_", "==_", "open_", "(_", "\"", "tests", "/", "data", "/", "6", "9", "k", ".", "out", "\"_", ")_", "._", "read_", "(_", ")_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 ]
Unused import	karlnapf/kameleon-mcmc/kameleon_mcmc/kernel/PolynomialKernel.py	[ { "content": "\"\"\"\nThis program is free software; you can redistribute it and/or modify\nit under the terms of the GNU General Public License as published by\nthe Free Software Foundation; either version 3 of the License, or\n(at your option) any later version.\n\nWritten (W) 2013 Heiko Strathmann\nWritten (W) 2013 Dino Sejdinovic\n\"\"\"\n\nfrom numpy import array\n\nfrom kameleon_mcmc.kernel.Kernel import Kernel\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class PolynomialKernel(Kernel):\n \n \n ", "metadata": "root.PolynomialKernel", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def __init__(self, degree,theta=0.2):\n Kernel.__init__(self)\n self.degree = degree\n self.theta = theta", "metadata": "root.PolynomialKernel.__init__", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 16 }, { "content": " def __str__(self):\n s=self.__class__.__name__+ \"=[\"\n s += \"degree=\"+ str(self.degree)\n s += \", \" + Kernel.__str__(self)\n s += \"]\"\n return s", "metadata": "root.PolynomialKernel.__str__", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 21 }, { "content": " def kernel(self, X, Y=None):\n \"\"\"\n Computes the polynomial kernel k(x,y)=(1+theta<x,y>)^degree for the given data\n X - samples on right hand side\n Y - samples on left hand side, can be None in which case its replaced by X\n \"\"\"\n if Y is None:\n Y = X\n \n return pow(self.theta+X.dot(Y.T), self.degree)", "metadata": "root.PolynomialKernel.kernel", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 28 }, { "content": " def gradient(self, x, Y):\n \"\"\"\n Computes the gradient of the Polynomial kernel wrt. to the left argument, i.e.\n \\nabla_x k(x,y)=\\nabla_x (1+x^Ty)^d=d(1+x^Ty)^(d-1) y\n \n x - single sample on right hand side (1D vector)\n Y - samples on left hand side (2D matrix)\n \"\"\"\n assert(len(x.shape)==1)\n assert(len(Y.shape)==2)\n assert(len(x)==Y.shape[1])\n \n return self.degreepow(1+x.dot(Y.T), self.degree)*Y", "metadata": "root.PolynomialKernel.gradient", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 39 } ]	[ { "span": "from numpy import array", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 23 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\"\"\"", "\\", "10", ";", "Thi", "s", " ", "program", " ", "is", " ", "free", " ", "software", ";", " ", "you", " ", "can", " ", "redis", "tribut", "e", " ", "it", " ", "and", "/", "or", " ", "modif", "y", "\\", "10", ";", "it", " ", "under", " ", "the", " ", "term", "s", " ", "of", " ", "the", " ", "GN", "U", " ", "General", " ", "Public", " ", "License", " ", "as", " ", "publi", "shed", " ", "by", "\\", "10", ";", "the", " ", 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Variable defined multiple times	mahmoud/boltons/tests/test_gcutils.py	[ { "content": " def test_toggle_gc_postcollect():\n COUNT = int(1e6)\n\n start = time.time()\n with toggle_gc_postcollect:\n x = [{} for x in range(COUNT)]\n no_gc_time = time.time() - start\n\n start = time.time()\n x = [{} for x in range(COUNT)]\n with_gc_time = time.time() - start\n\n time_diff = no_gc_time < with_gc_time", "metadata": "root.test_toggle_gc_postcollect", "header": "['module', '___EOS___']", "index": 21 } ]	[ { "span": "x ", "start_line": 26, "start_column": 12, "end_line": 26, "end_column": 13 } ]	[]	1	true	[ "[CLS]_", "Variable_", "defined_", "multiple_", "times_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "toggle", "\\u", "gc", "\\u", "postc", "olle", "ct_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "COUNT_", "=_", "int_", "(_", "1e6_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "start_", "=_", "time_", "._", "time_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "with_", "toggle", "\\u", "gc", "\\u", "postc", "olle", "ct_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "x_", "=_", "[_", "{_", "}_", "for_", "x_", "in_", "range_", "(_", "COUNT_", ")_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "no", "\\u", "gc", "\\u", "time_", "=_", "time_", "._", "time_", "(_", ")_", "-_", "start_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "start_", "=_", "time_", "._", "time_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "x_", "=_", "[_", "{_", "}_", "for_", "x_", "in_", "range_", "(_", "COUNT_", ")_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "with", "\\u", "gc", "\\u", "time_", "=_", "time_", "._", "time_", "(_", ")_", "-_", "start_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "time", "\\u", "diff_", "=_", "no", "\\u", "gc", "\\u", "time_", "<_", "with", "\\u", "gc", "\\u", "time_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	lambdalisue/django-permission/src/permission/templatetags/patch.py	[ { "content": "# vim: set fileencoding=utf-8 :\n\"\"\"\ndjango if templatetag patch\n\"\"\"\nimport django\n\n\nif django.VERSION < (1, 4):\n from django.template import Node\n from django.template import NodeList\n from django.template import VariableDoesNotExist\n from django.template import TemplateSyntaxError\n try:\n from django.template.base import TextNode\n except ImportError:\n from django.template import TextNode\n # copied from django 1.4b\n # copied from django 1.4b\nelse:\n from django.template.defaulttags import IfNode\n parser_patch = lambda instance: instance\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " class IfNode(Node):", "metadata": "root.IfNode", "header": "['module', '___EOS___']", "index": 17 }, { "content": " def __init__(self, conditions_nodelists):\n self.conditions_nodelists = conditions_nodelists", "metadata": "root.IfNode.__init__", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 18 }, { "content": " def __repr__(self):\n return \"<IfNode>\"", "metadata": "root.IfNode.__repr__", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 20 }, { "content": " def __iter__(self):\n for _, nodelist in self.conditions_nodelists:\n for node in nodelist:\n yield node", "metadata": "root.IfNode.__iter__", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 22 }, { "content": " @property\n def nodelist(self):\n return NodeList(node for _, nodelist in self.conditions_nodelists for node in nodelist)", "metadata": "root.IfNode.nodelist", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 26 }, { "content": " def render(self, context):\n for condition, nodelist in self.conditions_nodelists:\n if condition is not None: # if / elif clause\n try:\n match = condition.eval(context)\n except VariableDoesNotExist:\n match = None\n else: # else clause\n match = True\n if match:\n return nodelist.render(context)\n return ''", "metadata": "root.IfNode.render", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 29 }, { "content": " def parse(self, parse_until=None):\n if parse_until is None:\n parse_until = []\n nodelist = self.create_nodelist()\n while self.tokens:\n token = self.next_token()\n # Use the raw values here for TOKEN_* for a tiny performance boost.\n if token.token_type == 0: # TOKEN_TEXT\n self.extend_nodelist(nodelist, TextNode(token.contents), token)\n elif token.token_type == 1: # TOKEN_VAR\n if not token.contents:\n self.empty_variable(token)\n filter_expression = self.compile_filter(token.contents)\n var_node = self.create_variable_node(filter_expression)\n self.extend_nodelist(nodelist, var_node, token)\n elif token.token_type == 2: # TOKEN_BLOCK\n try:\n command = token.contents.split()[0]\n except IndexError:\n self.empty_block_tag(token)\n if command in parse_until:\n # put token back on token list so calling\n # code knows why it terminated\n self.prepend_token(token)\n return nodelist\n # execute callback function for this tag and append\n # resulting node\n self.enter_command(command, token)\n try:\n compile_func = self.tags[command]\n except KeyError:\n self.invalid_block_tag(token, command, parse_until)\n try:\n compiled_result = compile_func(self, token)\n except TemplateSyntaxError as e:\n if not self.compile_function_error(token, e):\n raise\n self.extend_nodelist(nodelist, compiled_result, token)\n self.exit_command()\n if parse_until:\n self.unclosed_block_tag(parse_until)\n return nodelist", "metadata": "root.parse", "header": "['module', '___EOS___']", "index": 42 }, { "content": " def parser_patch(instance):\n instance.__class__.parse = parse\n return instance", "metadata": "root.parser_patch", "header": "['module', '___EOS___']", "index": 84 } ]	[ { "span": "from django.template.defaulttags import IfNode", "start_line": 88, "start_column": 4, "end_line": 88, "end_column": 50 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "vim", ":", " ", "set", " ", "file", "encoding", "=", "utf", "-", "8", " ", ":_", "\\u\\u\\uNL\\u\\u\\u_", "\"\"\"", "\\", "10", ";", "django", " ", "if", " ", "templatet", "ag", " ", "patch", "\\", "10", ";\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "django_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "if_", "django_", "._", "VERSION_", "<_", "(_", "1_", ",_", "4_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "from_", "django_", "._", "template_", "import_", "Node_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "template_", "import_", "Node", "List_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "template_", "import_", "Varia", "ble", "Do", "es", "Not", "Exist_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", 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Unused import	oleiade/etcaetera/etcaetera/adapter/file.py	[ { "content": "import os\nimport imp\n\nfrom etcaetera.adapter.base import Adapter\nfrom etcaetera.utils import format_key\nfrom etcaetera.constants import (\n JSON_EXTENSIONS,\n YAML_EXTENSIONS,\n PYTHON_EXTENSIONS\n)\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class File(Adapter):\n\n", "metadata": "root.File", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def __init__(self, filepath, args, kwargs):\n self.filepath = filepath\n\n # If strict parameter (inherited from parent) is True,\n # strictness_check routine will be called\n super(File, self).__init__(args, **kwargs)", "metadata": "root.File.__init__", "header": "['class', 'File', '(', 'Adapter', ')', ':', '___EOS___']", "index": 13 }, { "content": " def strictness_check(self):\n if not os.path.exists(self.filepath):\n raise IOError(\"Path {0} does not exist\".format(self.filepath))", "metadata": "root.File.strictness_check", "header": "['class', 'File', '(', 'Adapter', ')', ':', '___EOS___']", "index": 20 }, { "content": " def load(self, formatter=None):\n try:\n fd = open(self.filepath, 'r')\n except IOError:\n if self.strict is True:\n raise\n else:\n return\n\n _, file_extension = os.path.splitext(self.filepath)\n\n if file_extension.lower() in JSON_EXTENSIONS:\n import json\n self.data = dict((self.format(k, formatter), v) for k, v in json.load(fd).items())\n elif file_extension.lower() in YAML_EXTENSIONS:\n from yaml import load as yload, dump as ydump\n try:\n from yaml import CLoader as Loader\n except ImportError:\n from yaml import Loader\n self.data = dict((self.format(k, formatter), v) for k, v in yload(fd, Loader=Loader).items())\n elif file_extension.lower() in PYTHON_EXTENSIONS:\n mod = imp.load_source('mod', self.filepath)\n self.data = dict((self.format(k, formatter), v) for k, v in vars(mod).items() if k.isupper())\n else:\n raise ValueError(\"Unhandled file extension {0}\".format(file_extension))\n\n fd.close()", "metadata": "root.File.load", "header": "['class', 'File', '(', 'Adapter', ')', ':', '___EOS___']", "index": 24 } ]	[ { "span": "from etcaetera.utils import format_key", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 38 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "import_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "imp_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "etc", "ae", "tera", "_", "._", "adapter_", "._", "base_", "import_", "Adapter_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "etc", "ae", "tera", "_", "._", "utils_", "import_", "format\\u", "key_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "etc", "ae", "tera", "_", "._", "constants_", "import_", "(_", "\\u\\u\\uNL\\u\\u\\u_", "JSO", "N", "\\u", "EXTENSIONS_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "YAM", "L", "\\u", "EXTENSIONS_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "PYTHON", "\\u", 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Unused import	dimagi/commcare-hq/corehq/form_processor/migrations/0041_noop_specify_table_names.py	[ { "content": "# -- coding: utf-8 --\nfrom __future__ import unicode_literals\n\nfrom django.db import models, migrations\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Migration(migrations.Migration):\n\n dependencies = [\n ('form_processor', '0040_save_functions'),\n ]\n\n operations = [\n migrations.AlterModelTable(\n name='caseattachmentsql',\n table='form_processor_caseattachmentsql',\n ),\n migrations.AlterModelTable(\n name='casetransaction',\n table='form_processor_casetransaction',\n ),\n migrations.AlterModelTable(\n name='commcarecaseindexsql',\n table='form_processor_commcarecaseindexsql',\n ),\n migrations.AlterModelTable(\n name='commcarecasesql',\n table='form_processor_commcarecasesql',\n ),\n migrations.AlterModelTable(\n name='xformattachmentsql',\n table='form_processor_xformattachmentsql',\n ),\n migrations.AlterModelTable(\n name='xforminstancesql',\n table='form_processor_xforminstancesql',\n ),\n migrations.AlterModelTable(\n name='xformoperationsql',\n table='form_processor_xformoperationsql',\n ),\n ]", "metadata": "root.Migration", "header": "['module', '___EOS___']", "index": 6 } ]	[ { "span": "from django.db import models, migrations", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 40 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "--", " ", "codi", "ng", ":", " ", "utf", "-", "8", " ", "--", "_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "\\u\\u", "future\\u\\u_", "import_", "unicode", "\\u", "literals_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "django_", "._", "db_", "import_", "models_", ",_", "migrations_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", 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2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	crossbario/autobahn-python/examples/twisted/websocket/echo_multicore/server.py	[ { "content": "###############################################################################\n#\n# The MIT License (MIT)\n#\n# Copyright (c) Tavendo GmbH\n#\n# Permission is hereby granted, free of charge, to any person obtaining a copy\n# of this software and associated documentation files (the \"Software\"), to deal\n# in the Software without restriction, including without limitation the rights\n# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell\n# copies of the Software, and to permit persons to whom the Software is\n# furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included in\n# all copies or substantial portions of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\n# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\n# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\n# THE SOFTWARE.\n#\n###############################################################################\n\nimport sys\nimport os\nimport pkg_resources\nimport StringIO\nfrom sys import argv, executable\nfrom socket import AF_INET\n\n# make sure we run a capable OS/reactor\n##\nstartupMsgs = []\nif 'bsd' in sys.platform:\n from twisted.internet import kqreactor\n kqreactor.install()\n startupMsgs.append(\"Alrighty: you run a capable kqueue platform - good job!\")\nelif sys.platform.startswith('linux'):\n from twisted.internet import epollreactor\n epollreactor.install()\n startupMsgs.append(\"Alrighty: you run a capable epoll platform - good job!\")\nelif sys.platform.startswith('darwin'):\n from twisted.internet import kqreactor\n kqreactor.install()\n startupMsgs.append(\"Huh, you run OSX and have kqueue, but don't be disappointed when performance sucks;)\")\nelif sys.platform == 'win32':\n raise Exception(\"Sorry dude, Twisted/Windows select/iocp reactors lack the necessary bits.\")\nelse:\n raise Exception(\"Hey man, what OS are you using?\")\n\nfrom twisted.internet import reactor\n\nstartupMsgs.append(\"Using Twisted reactor class %s on Twisted %s\" % (str(reactor.__class__), pkg_resources.require(\"Twisted\")[0].version))\n\n\nfrom twisted.internet import reactor\nfrom twisted.python import log\nfrom twisted.internet import reactor\nfrom twisted.internet.protocol import Factory\nfrom twisted.web.server import Site\nfrom twisted.web.static import File\n\nfrom autobahn.websocket.util import parse_url\n\nfrom autobahn.twisted.websocket import WebSocketServerFactory, \\\n WebSocketServerProtocol\n\nfrom autobahn.util import Stopwatch\n\n\nhasStatprof = False\ntry:\n import statprof\n startupMsgs.append(\"statprof found! you may enable statistical profiling\")\n hasStatprof = True\nexcept ImportError:\n startupMsgs.append(\"statprof not installed - no profiling available\")\n\n\n\n\n\n\n\n\n# export PYPYLOG=\"jit-log-opt,jit-backend:pypy.log\"\n\n# Run under \"perf\" and enable PyPy JIT logging\n##\n# Notes:\n##\n# - setting an env var (outside root) will NOT work (not propagated)\n# - setting in code also will NOT work\n##\n# sudo PYPYLOG=\"jit-log-opt,jit-backend:pypy.log\" perf record ~/pypy-20131102/bin/pypy server.py --workers 4\n\n\n\n\nPROFILER_FREQ = 2000\n\n\n\n# /usr/include/valgrind/valgrind.h\n# valgrind --tool=callgrind python server.py --wsuri ws://127.0.0.1:9000\n\n# http://valgrind.org/docs/manual/cg-manual.html\n# http://valgrind.org/docs/manual/cl-manual.html\n\n# https://bitbucket.org/pypy/jitviewer\n# http://morepypy.blogspot.de/2011/08/visualization-of-jitted-code.html\n# http://people.cs.uct.ac.za/~tmullins/work/writeup.pdf\n\n# list(range(psutil.NUM_CPUS))\n# p.get_cpu_affinity()\n\n# p.set_cpu_affinity([0])\n# p.set_nice(psutil.HIGH_PRIORITY_CLASS)\n\n\nif __name__ == '__main__':\n\n import argparse\n import psutil\n\n DEFAULT_WORKERS = psutil.cpu_count()\n\n parser = argparse.ArgumentParser(description='Autobahn WebSocket Echo Multicore Server')\n parser.add_argument('--wsuri', dest='wsuri', type=str, default=u'ws://127.0.0.1:9000', help='The WebSocket URI the server is listening on, e.g. ws://localhost:9000.')\n parser.add_argument('--port', dest='port', type=int, default=8080, help='Port to listen on for embedded Web server. Set to 0 to disable.')\n parser.add_argument('--workers', dest='workers', type=int, default=DEFAULT_WORKERS, help='Number of workers to spawn - should fit the number of (physical) CPU cores.')\n parser.add_argument('--noaffinity', dest='noaffinity', action=\"store_true\", default=False, help='Do not set worker/CPU affinity.')\n parser.add_argument('--backlog', dest='backlog', type=int, default=8192, help='TCP accept queue depth. You must tune your OS also as this is just advisory!')\n parser.add_argument('--silence', dest='silence', action=\"store_true\", default=False, help='Silence log output.')\n parser.add_argument('--debug', dest='debug', action=\"store_true\", default=False, help='Enable WebSocket debug output.')\n parser.add_argument('--interval', dest='interval', type=int, default=5, help='Worker stats update interval.')\n parser.add_argument('--profile', dest='profile', action=\"store_true\", default=False, help='Enable profiling.')\n\n parser.add_argument('--fd', dest='fd', type=int, default=None, help='If given, this is a worker which will use provided FD and all other options are ignored.')\n parser.add_argument('--cpuid', dest='cpuid', type=int, default=None, help='If given, this is a worker which will use provided CPU core to set its affinity.')\n\n options = parser.parse_args()\n\n if options.profile and not hasStatprof:\n raise Exception(\"profiling requested, but statprof not installed\")\n\n # parse WS URI into components and forward via options\n # FIXME: add TLS support\n isSecure, host, wsport, resource, path, params = parse_url(options.wsuri)\n options.wsport = wsport\n\n # if not options.silence:\n # log.startLogging(sys.stdout)\n\n if options.fd is not None:\n # run worker\n worker(options)\n else:\n if not options.silence:\n for m in startupMsgs:\n print m\n # run master\n master(options)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Stats:\n\n\n\n\n\n\n", "metadata": "root.Stats", "header": "['module', '___EOS___']", "index": 82 }, { "content": " def __init__(self):\n # stats period\n self.period = 0\n\n # currently connected client\n self.clients = 0\n\n # total (running) stats\n self.tMsgs = 0\n self.tOctets = 0\n self.tHandshakes = 0\n self.tOctetsWireIn = 0\n self.tOctetsWireOut = 0\n\n self.stopwatch = Stopwatch(start=False)\n\n # period stats\n self._advance()", "metadata": "root.Stats.__init__", "header": "['class', 'Stats', ':', '___EOS___']", "index": 84 }, { "content": " def _advance(self):\n self.period += 1\n self.pMsgs = 0\n self.pOctets = 0\n self.pHandshakes = 0\n self.pOctetsWireIn = 0\n self.pOctetsWireOut = 0\n self.stopwatch.resume()", "metadata": "root.Stats._advance", "header": "['class', 'Stats', ':', '___EOS___']", "index": 103 }, { "content": " def trackHandshake(self):\n self.tHandshakes += 1\n self.pHandshakes += 1", "metadata": "root.Stats.trackHandshake", "header": "['class', 'Stats', ':', '___EOS___']", "index": 112 }, { "content": " def trackMsg(self, length):\n self.tMsgs += 1\n self.pMsgs += 1\n self.tOctets += length\n self.pOctets += length", "metadata": "root.Stats.trackMsg", "header": "['class', 'Stats', ':', '___EOS___']", "index": 116 }, { "content": " def trackOctetsWireIn(self, count):\n self.tOctetsWireIn += count\n self.pOctetsWireIn += count", "metadata": "root.Stats.trackOctetsWireIn", "header": "['class', 'Stats', ':', '___EOS___']", "index": 122 }, { "content": " def trackOctetsWireOut(self, count):\n self.tOctetsWireOut += count\n self.pOctetsWireOut += count", "metadata": "root.Stats.trackOctetsWireOut", "header": "['class', 'Stats', ':', '___EOS___']", "index": 126 }, { "content": " def stats(self, advance=True):\n elapsed = self.stopwatch.stop()\n\n s = (\"Period No. : %d\\n\" +\n \"Period duration : %.3f s\\n\" +\n \"Connected clients : %d\\n\" +\n \"\\n\" +\n\n \"Period\\n\" +\n \" Handshakes : %20d # %20d #/s\\n\" +\n \" Echo'ed msgs : %20d # %20d #/s\\n\" +\n \" Echo'ed octets : %20d B %20d B/s\\n\" +\n \" Wire octets in : %20d B %20d B/s\\n\" +\n \" Wire octets out : %20d B %20d B/s\\n\" +\n \"\\n\" +\n\n \"Total\\n\" +\n \" Handshakes : %20d #\\n\" +\n \" Echo'ed msgs : %20d #\\n\" +\n \" Echo'ed octets : %20d B\\n\" +\n \" Wire octets in : %20d B\\n\" +\n \" Wire octets out : %20d B\\n\" +\n\n \"\"\n ) % (self.period,\n round(elapsed, 3),\n self.clients,\n\n self.pHandshakes,\n round(float(self.pHandshakes) / elapsed),\n\n self.pMsgs,\n round(float(self.pMsgs) / elapsed),\n\n self.pOctets,\n round(float(self.pOctets) / elapsed),\n\n self.pOctetsWireIn,\n round(float(self.pOctetsWireIn) / elapsed),\n\n self.pOctetsWireOut,\n round(float(self.pOctetsWireOut) / elapsed),\n\n self.tHandshakes,\n self.tMsgs,\n self.tOctets,\n self.tOctetsWireIn,\n self.tOctetsWireOut,\n )\n self._advance()\n return s", "metadata": "root.Stats.stats", "header": "['class', 'Stats', ':', '___EOS___']", "index": 130 }, { "content": "class EchoServerProtocol(WebSocketServerProtocol):\n\n\n\n", "metadata": "root.EchoServerProtocol", "header": "['module', '___EOS___']", "index": 183 }, { "content": " def onOpen(self):\n self.factory.stats.clients += 1\n self.factory.stats.trackHandshake()", "metadata": "root.EchoServerProtocol.onOpen", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 185 }, { "content": " def onMessage(self, msg, binary):\n self.sendMessage(msg, binary)\n self.factory.stats.trackMsg(len(msg))", "metadata": "root.EchoServerProtocol.onMessage", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 189 }, { "content": " def onClose(self, wasClean, code, reason):\n self.factory.stats.clients -= 1", "metadata": "root.EchoServerProtocol.onClose", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 193 }, { "content": " def connectionLost(self, reason):\n WebSocketServerProtocol.connectionLost(self, reason)\n\n self.factory.stats.trackOctetsWireIn(self.trafficStats.preopenIncomingOctetsWireLevel +\n self.trafficStats.incomingOctetsWireLevel)\n\n self.factory.stats.trackOctetsWireOut(self.trafficStats.preopenOutgoingOctetsWireLevel +\n self.trafficStats.outgoingOctetsWireLevel)", "metadata": "root.EchoServerProtocol.connectionLost", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 196 }, { "content": "class EchoServerFactory(WebSocketServerFactory):\n\n protocol = EchoServerProtocol\n", "metadata": "root.EchoServerFactory", "header": "['module', '___EOS___']", "index": 206 }, { "content": " def __init__(self, wsuri):\n WebSocketServerFactory.__init__(self, wsuri)\n self.stats = Stats()", "metadata": "root.EchoServerFactory.__init__", "header": "['class', 'EchoServerFactory', '(', 'WebSocketServerFactory', ')', ':', '___EOS___']", "index": 210 }, { "content": "def master(options):\n \"\"\"\n Start of the master process.\n \"\"\"\n if not options.silence:\n print \"Master started on PID %s\" % os.getpid()\n\n # start embedded Web server if asked for (this only runs on master)\n ##\n if options.port:\n webdir = File(\".\")\n web = Site(webdir)\n web.log = lambda _: None # disable annoyingly verbose request logging\n reactor.listenTCP(options.port, web)\n\n # we just need some factory like thing .. it won't be used on master anyway\n # for actual socket accept\n ##\n factory = Factory()\n\n # create socket, bind and listen ..\n port = reactor.listenTCP(options.wsport, factory, backlog=options.backlog)\n\n # .. but immediately stop reading: we only want to accept on workers, not master\n port.stopReading()\n\n # fire off background workers\n ##\n for i in range(options.workers):\n\n args = [executable, \"-u\", __file__, \"--fd\", str(port.fileno()), \"--cpuid\", str(i)]\n\n # pass on cmd line args to worker ..\n args.extend(sys.argv[1:])\n\n reactor.spawnProcess(\n None, executable, args,\n childFDs={0: 0, 1: 1, 2: 2, port.fileno(): port.fileno()},\n env=os.environ)\n\n reactor.run()", "metadata": "root.master", "header": "['module', '___EOS___']", "index": 227 }, { "content": "def worker(options):\n \"\"\"\n Start background worker process.\n \"\"\"\n workerPid = os.getpid()\n\n if not options.noaffinity:\n p = psutil.Process(workerPid)\n print \"affinity [before]\", p.cpu_affinity()\n p.cpu_affinity([options.cpuid])\n print \"affinity [after]\", p.cpu_affinity()\n\n factory = EchoServerFactory(options.wsuri)\n\n # The master already created the socket, just start listening and accepting\n ##\n reactor.adoptStreamPort(options.fd, AF_INET, factory)\n\n if not options.silence:\n print \"Worker started on PID %s using factory %s and protocol %s\" % (workerPid, factory, factory.protocol)\n # print \"Worker %d PYPYLOG=%s\" % (workerPid, os.environ.get('PYPYLOG', None))\n\n if options.profile:\n statprof.reset(PROFILER_FREQ)\n statprof.start()\n\n if not options.silence:\n def stat():\n if options.profile:\n statprof.stop()\n\n output = StringIO.StringIO()\n output.write(\"-\" * 80 + \"\\n\")\n output.write(\"Worker Statistics (PID %s)\\n\\n%s\" % (workerPid, factory.stats.stats()))\n\n if options.profile:\n output.write(\"\\n\")\n # format = statprof.DisplayFormats.ByLine\n # format = statprof.DisplayFormats.ByMethod\n # statprof.display(output, format = format)\n statprof.display(output)\n\n output.write(\"-\" * 80 + \"\\n\\n\")\n\n sys.stdout.write(output.getvalue())\n\n if options.profile:\n statprof.reset(PROFILER_FREQ)\n statprof.start()\n\n reactor.callLater(options.interval, stat)\n\n reactor.callLater(options.interval, stat)\n\n if False:\n import cProfile\n print \"RUNNING cProfile\"\n cProfile.run('reactor.run()')\n else:\n reactor.run()", "metadata": "root.worker", "header": "['module', '___EOS___']", "index": 273 } ]	[ { "span": "from sys import argv, executable", "start_line": 30, "start_column": 0, "end_line": 30, "end_column": 32 }, { "span": "from twisted.python import log", "start_line": 59, "start_column": 0, "end_line": 59, "end_column": 30 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "###########", "###########", "###########", "###########", "###########", "###########", "###########", "##", "_", "\\u\\u\\uNL\\u\\u\\u_", "#", "_", "\\u\\u\\uNL\\u\\u\\u_", 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Except block handles 'BaseException'	goFrendiAsgard/kokoropy/kokoropy/packages/alembic/operations.py	[ { "content": "from contextlib import contextmanager\n\nfrom sqlalchemy.types import NULLTYPE, Integer\nfrom sqlalchemy import schema as sa_schema\n\nfrom . import util\nfrom .compat import string_types\nfrom .ddl import impl\n\n__all__ = ('Operations',)\n\ntry:\n from sqlalchemy.sql.naming import conv\nexcept:\n conv = None\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "except:", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 7 } ]	[]	1	true	[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "from_", "contextlib_", "import_", "contextmanager_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "sqlalchemy_", "._", "types_", "import_", "NULL", "TYPE_", ",_", "Integer_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "sqlalchemy_", "import_", "schema_", "as_", "sa", "\\u", "schema_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "._", "import_", "util_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "._", "compat_", "import_", "string", "\\u", "types_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "._", "ddl", "_", "import_", "impl_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u", "all\\u\\u_", "=_", "(_", "'", "Opera", "tion", "s", "'_", ",_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "from_", "sqlalchemy_", "._", "sql_", "._", "naming_", "import_", "conv_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "conv_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Except block handles 'BaseException'	CountZer0/PipelineConstructionSet/python/maya/core/mayaCore.py	[ { "content": " def listcP(self, nodeWplug, quiet=0, all=0): #@ReservedAssignment\n \"\"\"\n SYNOPSIS\n Simple wrapper for listConnetions w/ plug\n\n INPUTS\n (PyNode.attr) mtNodeWPlug: The metaNode.plug to look at connections.\n (bool)\t\t\t\tquiet:\t 1 = suppress warning\n (bool) \t\t\t all:\t Return all connections\n\n RETURNS: (PyNode) connected node via plug\n \"\"\"\n try:\n if listConnections(nodeWplug):\n allConnections = listConnections(nodeWplug)\n if all:\n return map(lambda x: PyNode(x), allConnections)\n return PyNode(allConnections[0])\n except:\n if not quiet:\n self.logger.warning(\"Nothing connected to '%s'\" % nodeWplug)\n return 0", "metadata": "root.MayaMiscCore.listcP", "header": "['class', 'MayaMiscCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################################', '___NL___', '##\\tGeneric methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################################', '___NL___', '___EOS___']", "index": 693 }, { "content": " @staticmethod\n def removeNameSpace(ns, nuke=0):\n\n # parse ns\n parentNS, childNS = ns.split(':')\n\n # create new children NS\n if childNS not in namespaceInfo(lon=1):\n Namespace.create(childNS)\n\n namespace(set=':') #@UndefinedVariable\n if nuke:\n childNS = ':'\n namespace(mv=(ns, childNS), f=1) #@UndefinedVariable\n\n # delete it\n Namespace(ns).remove()\n\n try:\n # try to remove parent if it is not part of another child namespace\n nss = listNamespaces(recursive=True, internal=False)\n if not [ns for ns in nss if re.search('%s:' % parentNS, ns)]:\n Namespace(parentNS).clean()\n Namespace(parentNS).remove()\n except:\n pass # still stuff in it", "metadata": "root.MayaNamespaceCore.removeNameSpace", "header": "['class', 'MayaNamespaceCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################################', '___NL___', '##\\tNamespace methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################################', '___NL___', '___EOS___']", "index": 1038 }, { "content": " def lockVisibleAttrs(self, node):\n \"\"\"\n SYNOPSIS\n Locks all keyable attributes on the input node.\n\n INPUTS\n (string) node: The node to lock keyable attributes on.\n\n RETURNS: Nothing.\n \"\"\"\n\n if not len(ls(node)):\n self.logger.error(\"lockVisibleAttrs: input node does not exist '%s'.\\n\" % node)\n node = self.convertToPyNode(node)\n\n keyableAttrs = node.listAttr(k=1)\n if keyableAttrs:\n for kAttr in keyableAttrs:\n try:\n kAttr.lock()\n except:\n pass", "metadata": "root.MayaVisibilityCore.lockVisibleAttrs", "header": "['class', 'MayaVisibilityCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################', '___NL___', '##\\tVisibility methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################', '___NL___', '___EOS___']", "index": 1372 }, { "content": " def unlockVisibleAttrs(self, node):\n \"\"\"\n SYNOPSIS\n Locks all keyable attributes on the input node.\n\n INPUTS\n (string) node: The node to lock keyable attributes on.\n\n RETURNS: Nothing.\n \"\"\"\n node = self.convertToPyNode(node)\n\n keyableAttrs = node.listAttr(k=1)\n if keyableAttrs:\n for kAttr in keyableAttrs:\n try:\n kAttr.unlock()\n except:\n pass", "metadata": "root.MayaVisibilityCore.unlockVisibleAttrs", "header": "['class', 'MayaVisibilityCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################', '___NL___', '##\\tVisibility methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################', '___NL___', '___EOS___']", "index": 1395 }, { "content": " def checkHier4Mesh(self, metaRoot):\n \"\"\"\n NAME: checkHier4Mesh\n\n SYNOPSIS\n Check main hierarchy to see if any joint has a 'mesh' (poly)\n shape node parented to it. This will break the granny exporter\n\n INPUTS\n (string) \tmetaRoot:\tmetaRoot PyNode\n\n RETURNS: (list) [result, [offending]]\n \"\"\"\n\n offending = []\n result = [0, 0]\n\n if objExists(metaRoot):\n metaRoot = self.convertToPyNode(metaRoot)\n rootJoint = self.listcP(metaRoot.rootJoint)\n if rootJoint:\n for child in rootJoint.getChildren(ad=1):\n try:\n if objectType(child) == 'mesh':\n if child.getParent().attr('type').get() == 5: #ball joints\n offending.append(child)\n except:\n pass # pymel erros on checking objectType of effectors?\n\n if offending:\n result = [1, offending]\n select(offending, r=1)\n\n return result", "metadata": "root.MayaMeshCore.checkHier4Mesh", "header": "['class', 'MayaMeshCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################################', '___NL___', '##\\tMesh methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################################', '___NL___', '___EOS___']", "index": 1426 } ]	[ { "span": "except:", "start_line": 711, "start_column": 8, "end_line": 711, "end_column": 15 }, { "span": "except:", "start_line": 1062, "start_column": 8, "end_line": 1062, "end_column": 15 }, { "span": "except:", "start_line": 1392, "start_column": 16, "end_line": 1392, "end_column": 23 }, { "span": "except:", "start_line": 1412, "start_column": 16, "end_line": 1412, "end_column": 23 }, { "span": "except:", "start_line": 1452, "start_column": 20, "end_line": 1452, "end_column": 27 } ]	[]	1	true	[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "class_", "Maya", "Mis", "c", "Core_", "(_", "Maya", "_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "###########", 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Module is imported with 'import' and 'import from'	lobocv/pyperform/examples/imports.py	[ { "content": "@ComparisonBenchmark('imports', timeit_repeat=10)\ndef import_top_level():\n import os\n import datetime\n import collections\n import json", "metadata": "root.import_top_level", "header": "['module', '___EOS___']", "index": 6 } ]	[ { "span": "import os", "start_line": 8, "start_column": 4, "end_line": 8, "end_column": 13 }, { "span": "import datetime", "start_line": 9, "start_column": 4, "end_line": 9, "end_column": 19 }, { "span": "import collections", "start_line": 10, "start_column": 4, "end_line": 10, "end_column": 22 }, { "span": "import json", "start_line": 11, "start_column": 4, "end_line": 11, "end_column": 15 } ]	[]	1	true	[ "[CLS]_", "Module_", "is_", "imported_", "with_", "'", "import", "'_", "and_", "'", "import", " ", "from", "'_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "@_", "Compari", "son", "Benchmark", "_", "(_", "'", "import", "s", "'_", ",_", "time", "it", "\\u", "repeat_", "=_", "10_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "import", "\\u", "top", "\\u", "level_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "import_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "datetime_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "collections_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "json_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2, 0, 1, 2 ]
Implicit string concatenation in a list	rizar/attention-lvcsr/libs/Theano/theano/sandbox/gpuarray/nnet.py	[ { "content": " def gpu_kernels(self, node, nodename):\n dtype_x = node.inputs[0].dtype\n dtype_sm = node.outputs[0].dtype\n load_x = load_w(dtype_x)\n write_sm = write_w(node.outputs[0].dtype)\n work_sm = work_dtype(dtype_sm)\n flags = Kernel.get_flags(dtype_x, dtype_sm)\n type_x = gpuarray.dtype_to_ctype(dtype_x)\n type_sm = gpuarray.dtype_to_ctype(dtype_sm)\n type_acc = gpuarray.dtype_to_ctype(work_sm)\n params = [\n 'uintp', 'uintp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp'\n ]\n kernels = []\n kname = \"kSoftmax\"\n k_var = \"kSoftmax_\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"%s * buf2 = buf + N\" % type_acc,\n \"x = (const %s )(((char )x)+offset_x)\" % type_x,\n \"sm = (%s )(((char )sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n \"buf[tx] = %s(x[blockIDX * sx0 + tx * sx1])\" % load_x,\n \"buf2[tx] = buf[tx]\",\n \"}\",\n \"__syncthreads()\",\n inline_softmax('N', 'buf', 'buf2', 'threadIdx.x',\n 'blockDim.x', dtype=work_sm),\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n # This set all value correctly\n \"sm[blockIDX * sm_s0 + tx * sm_s1] = %s(buf[tx])\" % write_sm,\n \"}\",\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n kname = \"kSoftmax_fixed_shared\"\n k_var = \"kSoftmax_fixed_shared\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"x = (const %s )(((char )x)+offset_x)\" % type_x,\n \"sm = (%s )(((char )sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"const %s x_ptr = &x[blockIDX sx0]\" % type_x,\n \"%s sm_ptr = &sm[blockIDX sm_s0]\" % type_sm,\n inline_softmax_fixed_shared('N', 'buf', 'x_ptr', 'sx1',\n load_x,\n 'sm_ptr', 'sm_s1', write_sm,\n 'threadIdx.x', 'blockDim.x',\n dtype=work_sm),\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n return kernels", "metadata": "root.GpuSoftmax.gpu_kernels", "header": "['class', 'GpuSoftmax', '(', 'GpuKernelBase', ',', 'Op', ')', ':', '___EOS___']", "index": 678 }, { "content": " def gpu_kernels(self, node, nodename):\n dtype_x = node.inputs[0].dtype\n dtype_b = node.inputs[1].dtype\n dtype_sm = node.outputs[0].dtype\n load_x = load_w(node.inputs[0].dtype)\n load_b = load_w(node.inputs[1].dtype)\n write_sm = write_w(node.outputs[0].dtype)\n work_sm = work_dtype(node.outputs[0].dtype)\n flags = Kernel.get_flags(dtype_x, dtype_b, dtype_sm)\n type_x = gpuarray.dtype_to_ctype(dtype_x)\n type_b = gpuarray.dtype_to_ctype(dtype_b)\n type_sm = gpuarray.dtype_to_ctype(dtype_sm)\n type_acc = gpuarray.dtype_to_ctype(work_sm)\n params = [\n 'uintp', 'uintp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp',\n gpuarray.GpuArray, 'uintp', 'intp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp'\n ]\n kernels = []\n kname = \"kSoftmaxWithBias\"\n k_var = \"kSoftmaxWithBias_\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n 'const %s * b' % type_b, 'const ga_size offset_b',\n 'const ga_ssize sb0',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"%s * buf2 = buf + N\" % type_acc,\n \"x = (const %s )(((char )x)+offset_x)\" % type_x,\n \"b = (const %s )(((char )b)+offset_b)\" % type_b,\n \"sm = (%s )(((char )sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n \"buf[tx] = %s(x[blockIDX * sx0 + tx * sx1])\" % load_x,\n \"buf[tx] += %s(b[tx * sb0])\" % load_b,\n \"buf2[tx] = buf[tx]\",\n \"}\",\n \"__syncthreads()\",\n inline_softmax('N', 'buf', 'buf2',\n 'threadIdx.x', 'blockDim.x', work_sm),\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n \"sm[blockIDX * sm_s0 + tx * sm_s1] = %s(buf[tx])\" % write_sm,\n \"}\",\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n kname = \"kSoftmaxWithBias_fixed_shared\"\n k_var = \"kSoftmaxWithBias_fixed_shared\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n 'const %s * b' % type_b, 'const ga_size offset_b',\n 'const ga_ssize sb0',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"x = (const %s )(((char )x)+offset_x)\" % type_x,\n \"b = (const %s )(((char )b)+offset_b)\" % type_b,\n \"sm = (%s )(((char )sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"const %s x_ptr = &x[blockIDX sx0]\" % type_x,\n \"%s sm_ptr = &sm[blockIDX sm_s0]\" % type_sm,\n inline_softmax_fixed_shared('N', 'buf', 'x_ptr', 'sx1',\n load_x,\n 'sm_ptr', 'sm_s1', write_sm,\n 'threadIdx.x', 'blockDim.x',\n 'b', 'sb0', load_b, work_sm),\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n return kernels", "metadata": "root.GpuSoftmaxWithBias.gpu_kernels", "header": "['class', 'GpuSoftmaxWithBias', '(', 'GpuKernelBase', ',', 'Op', ')', ':', '___EOS___']", "index": 892 } ]	[ { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", "start_line": 707, "start_column": 18, "end_line": 708, "end_column": 48 }, { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", "start_line": 737, "start_column": 18, "end_line": 738, "end_column": 48 }, { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", "start_line": 928, "start_column": 18, "end_line": 929, "end_column": 48 }, { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", 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Unused import	splunk/splunk-webframework/server/splunkdj/middlewares.py	[ { "content": "\nfrom django.middleware.csrf import get_token\nfrom django.conf import settings\nfrom django.middleware.locale import LocaleMiddleware\nfrom django.core.urlresolvers import is_valid_path, resolve, reverse\nfrom django.http import HttpResponseRedirect\nfrom django.utils.cache import patch_vary_headers\nfrom django.utils import translation\nfrom django.http import Http404\n\nfrom splunkdj.auth.backends import get_user\nfrom splunkdj.utility import format_local_tzoffset, create_derived_service\n\nimport datetime\nimport time\nimport logging, logging.handlers\nimport rfc822\nimport sys\nimport os\n\nlogger = logging.getLogger('spl.django.service')\n \n \n \n \n \n\n# This Django request logger is an implementation of Splunkweb's logging \n# handler. Django's objects are different, but the resulting logs are meant\n# to be the same as Splunkweb\n\n \n\n \n ", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class SplunkCsrfMiddleware(object):", "metadata": "root.SplunkCsrfMiddleware", "header": "['module', '___EOS___']", "index": 22 }, { "content": " def process_view(self, request, args, kwargs):\n get_token(request)\n return None", "metadata": "root.SplunkCsrfMiddleware.process_view", "header": "['class', 'SplunkCsrfMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 23 }, { "content": "class SplunkResolvedUrlMiddleware(object):", "metadata": "root.SplunkResolvedUrlMiddleware", "header": "['module', '___EOS___']", "index": 27 }, { "content": " def process_request(self, request):\n # Set a default so we don't have to ensure it has the attribute\n request.app_name = None\n request.url_name = None\n \n resolved = None\n try:\n resolved = resolve(request.path_info)\n except:\n # If we had an error in resolution, then we can continue, we don't\n # need to do anything\n pass\n \n # If we don't have a resolved match, there is nothing for us to do. \n # We can just go ahead and return.\n if resolved:\n request.app_name = resolved.app_name\n request.url_name = resolved.url_name\n \n return", "metadata": "root.SplunkResolvedUrlMiddleware.process_request", "header": "['class', 'SplunkResolvedUrlMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 28 }, { "content": "class SplunkAppEnabledMiddleware(object):\n \"\"\"\n Ensure that when a URL pattern is accessed in a particular app-scope,\n that the app in question is enabled.\n \"\"\"\n \n ", "metadata": "root.SplunkAppEnabledMiddleware", "header": "['module', '___EOS___']", "index": 49 }, { "content": " def _verify_app_is_enabled(self, service, app_name):\n if app_name and app_name == 'homefx':\n return\n \n # We need to use the most general service as the app may be disabled.\n service = create_derived_service(service, app=None, owner=None)\n try:\n app = service.apps[app_name]\n if app['disabled'] == '1' or app['visible'] == '0':\n raise Http404(\"Application '%s' is disabled.\" % app_name)\n except:\n raise Http404(\"Application '%s' is disabled.\" % app_name)", "metadata": "root.SplunkAppEnabledMiddleware._verify_app_is_enabled", "header": "['class', 'SplunkAppEnabledMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 55 }, { "content": " def process_request(self, request):\n if request.app_name and request.user.is_authenticated():\n # Now that we have a name for the app, we can go ahead and\n # try and see if that app is enabled.\n return self._verify_app_is_enabled(request.service, request.app_name)\n \n return", "metadata": "root.SplunkAppEnabledMiddleware.process_request", "header": "['class', 'SplunkAppEnabledMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 68 }, { "content": "class SplunkLocaleMiddleware(LocaleMiddleware):\n # The base LocaleMiddleware class in Django core does not seem to properly\n # handle redirects when Django is not mounted on the root. This simply\n # reimplements the logic for handling the response, most of this code is\n # taken verbatim, and we only changed the path that we redirect to.", "metadata": "root.SplunkLocaleMiddleware", "header": "['module', '___EOS___']", "index": 76 }, { "content": " def process_response(self, request, response):\n language = translation.get_language()\n if (response.status_code == 404 and\n not translation.get_language_from_path(request.path_info)\n and self.is_language_prefix_patterns_used()):\n urlconf = getattr(request, 'urlconf', None)\n language_path = '/%s%s' % (language, request.path_info)\n path_valid = is_valid_path(language_path, urlconf)\n if (not path_valid and settings.APPEND_SLASH\n and not language_path.endswith('/')):\n path_valid = is_valid_path(\"%s/\" % language_path, urlconf)\n\n if path_valid:\n path = request.get_full_path()\n script_mount = request.META.get(\"SCRIPT_NAME\", \"\")\n \n if path.startswith(script_mount):\n path = path.replace(script_mount, (\"%s/%s\" % (script_mount, language)), 1)\n \n language_url = \"%s://%s%s\" % (\n request.is_secure() and 'https' or 'http',\n request.get_host(), path)\n return HttpResponseRedirect(language_url)\n translation.deactivate()\n\n patch_vary_headers(response, ('Accept-Language',))\n if 'Content-Language' not in response:\n response['Content-Language'] = language\n return response", "metadata": "root.SplunkLocaleMiddleware.process_response", "header": "['class', 'SplunkLocaleMiddleware', '(', 'LocaleMiddleware', ')', ':', '___NEWLINE___', '# The base LocaleMiddleware class in Django core does not seem to properly', '___NL___', '# handle redirects when Django is not mounted on the root. This simply', '___NL___', '# reimplements the logic for handling the response, most of this code is', '___NL___', '# taken verbatim, and we only changed the path that we redirect to.', '___NL___', '___EOS___']", "index": 81 }, { "content": "class SplunkWebSessionMiddleware(object):\n \n ", "metadata": "root.SplunkWebSessionMiddleware", "header": "['module', '___EOS___']", "index": 111 }, { "content": " def __init__(self, port=8000, *kwargs):\n \n self._initialized = False\n self._storage_path = None\n \n if not settings.SPLUNK_WEB_INTEGRATED:\n return\n \n try:\n from lib.util import splunk_to_cherry_cfg, make_absolute\n \n cherrypy_cfg = splunk_to_cherry_cfg('web', 'settings')\n \n storage_type = cherrypy_cfg.get('tools.sessions.storage_type')\n storage_path = None\n \n if storage_type == 'file':\n storage_path = make_absolute(cherrypy_cfg['tools.sessions.storage_path'])\n else:\n return\n \n self._storage_path = storage_path\n self._initialized = True\n except Exception, e:\n self._initialized = False\n pass", "metadata": "root.SplunkWebSessionMiddleware.__init__", "header": "['class', 'SplunkWebSessionMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 112 }, { "content": " def process_request(self, request):\n if not self._initialized or not self._storage_path:\n return\n \n user = None\n session = None\n \n try:\n from lib.sessions import FileSession\n \n cookie_name = 'session_id_%s' % settings.SPLUNK_WEB_PORT\n if cookie_name not in request.COOKIES:\n return\n \n splunkweb_cookie = request.COOKIES[cookie_name]\n \n session = FileSession(\n splunkweb_cookie,\n storage_path=self._storage_path,\n timeout=60,\n clean_freq=5\n )\n \n # Acquire the lock. If this fails, we assume that the lock is no\n # longer acquired, and thus does not need to be released. Any \n # future use is protected by the try/finally which will release\n # the lock when it is complete.\n session.acquire_lock(read_lock=True)\n \n # DO NOT PUT ANYTHING HERE. ALL CODE SHOULD BE INSIDE THE TRY/FINALLY,\n # SO THAT WE CAN ENSURE THE SESSION LOCK GETS RELEASED.\n \n try:\n if 'sessionKey' in session:\n session_key = \"Splunk %s\" % session['sessionKey']\n username = None\n \n if 'user' in session and 'name' in session['user']:\n username = session['user']['name']\n \n user = get_user(username, session_key)\n if user:\n request._cached_user = user\n finally:\n # If we failed to create a user, and we have a session,\n # then we need to delete the session.\n # The main reason is that if we don't have a user, it means\n # we are not authenticated. If we aren't authenticated, we'll\n # get redirected to Splunkweb's login page, which will just \n # redirect us back if a sessionKey value exists (whether it\n # is valid or not). We then get into an infinite redirect loop,\n # as we'll just come back here.\n if not user:\n session.delete()\n \n # Release the lock\n session.release_lock()\n \n except Exception, e:\n logger.exception(e)\n pass", "metadata": "root.SplunkWebSessionMiddleware.process_request", "header": "['class', 'SplunkWebSessionMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 140 }, { "content": "class SplunkDjangoRequestLoggingMiddleware(object):\n error_logger = None\n access_logger = None\n\n access_log_format = '%(h)s %(l)s %(u)s %(t)s \"%(r)s\" %(s)s %(b)s \"%(f)s\" \"%(a)s\"' \n\n\n", "metadata": "root.SplunkDjangoRequestLoggingMiddleware", "header": "['module', '___EOS___']", "index": 206 }, { "content": " def __init__(self):\n self.access_logger = logging.getLogger('spl.django.access')\n self.error_logger = logging.getLogger('spl.django.error')", "metadata": "root.SplunkDjangoRequestLoggingMiddleware.__init__", "header": "['class', 'SplunkDjangoRequestLoggingMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 212 }, { "content": " def process_response(self, request, response):\n\n \"\"\"\n Write to the access log (in Apache/NCSA Combined Log format).\n\n This is a port of the Splunk web_access logging code. It is a rough\n mapping of request objects in the splunk web cherrypy server to equivalent\n objects in the django environment \n \"\"\"\n atoms = {'h': request.META.get('REMOTE_ADDR', ''),# or REMOTE_HOST\n 'l': '-',\n 'u': getattr(request, 'user', '-'),\n 't': self.access_time(time.time()), #TODO: splunkweb uses cherrypy.serving.response.time\n 'r': \"%s %s %s\" % (request.method, \n request.get_full_path(), \n request.META.get('SERVER_PROTOCOL', '')), #or ACTUAL_SERVER_PROTOCOL\n 's': response.status_code,\n 'b': len(response.content) or '-',\n 'f': request.META.get('HTTP_REFERER', ''),\n 'a': request.META.get('HTTP_USER_AGENT', ''),\n }\n\n for k, v in atoms.items():\n if isinstance(v, unicode):\n v = v.encode('utf8')\n elif not isinstance(v, str):\n v = str(v)\n # Fortunately, repr(str) escapes unprintable chars, \\n, \\t, etc\n # and backslash for us. All we have to do is strip the quotes.\n v = repr(v)[1:-1]\n # Escape double-quote.\n atoms[k] = v.replace('\"', '\\\\\"')\n\n try:\n #TODO: add a response id and time here?\n self.access_logger.info(self.access_log_format % atoms)\n except:\n error_logger.log(\"Error writing access log\")\n self(traceback=true)\n\n return response", "metadata": "root.SplunkDjangoRequestLoggingMiddleware.process_response", "header": "['class', 'SplunkDjangoRequestLoggingMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 216 }, { "content": " def access_time(self, req_time):\n now = datetime.datetime.fromtimestamp(req_time)\n month = rfc822._monthnames[now.month - 1].capitalize()\n return ('[%02d/%s/%04d:%02d:%02d:%02d.%03d %s]' %\n (now.day, month, now.year, now.hour, now.minute, now.second, \n now.microsecond/1000, format_local_tzoffset(req_time)))", "metadata": "root.SplunkDjangoRequestLoggingMiddleware.access_time", "header": "['class', 'SplunkDjangoRequestLoggingMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 258 } ]	[ { "span": "from django.core.urlresolvers import is_valid_path, resolve, reverse", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 68 }, { "span": "import sys", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 10 }, { "span": "import os", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 9 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "django_", "._", "middleware_", "._", "csrf_", "import_", "get", "\\u", "token_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "conf_", "import_", "settings_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "middleware_", "._", "locale_", "import_", "Local", "e", "Middleware_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "core_", "._", "urlresolvers_", "import_", "is", "\\u", "valid", "\\u", "path_", ",_", "resolve_", ",_", 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Unused import	azoft-dev-team/imagrium/env/Lib/xml/sax/__init__.py	[ { "content": "\"\"\"Simple API for XML (SAX) implementation for Python.\n\nThis module provides an implementation of the SAX 2 interface;\ninformation about the Java version of the interface can be found at\nhttp://www.megginson.com/SAX/. The Python version of the interface is\ndocumented at <...>.\n\nThis package contains the following modules:\n\nhandler -- Base classes and constants which define the SAX 2 API for\n the 'client-side' of SAX for Python.\n\nsaxutils -- Implementation of the convenience classes commonly used to\n work with SAX.\n\nxmlreader -- Base classes and constants which define the SAX 2 API for\n the parsers used with SAX for Python.\n\ndrivers2 -- Contains the driver for that wraps a Java sax implementation in python\n objects.\n\"\"\"\n\nfrom xmlreader import InputSource\nfrom handler import ContentHandler, ErrorHandler\nfrom _exceptions import SAXException, SAXNotRecognizedException, \\\n SAXParseException, SAXNotSupportedException, \\\n SAXReaderNotAvailable\n\n\n\n\n# this is the parser list used by the make_parser function if no\n# alternatives are given as parameters to the function\n\ndefault_parser_list = [\"xml.sax.drivers2.drv_javasax\"]\n\n# tell modulefinder that importing sax potentially imports expatreader\n_false = 0\nif _false:\n import xml.sax.drivers2.drv_javasax\n\nimport os, sys\nif os.environ.has_key(\"PY_SAX_PARSER\"):\n default_parser_list = os.environ[\"PY_SAX_PARSER\"].split(\",\")\ndel os\n\n_key = \"python.xml.sax.parser\"\nif sys.platform[:4] == \"java\" and sys.registry.containsKey(_key):\n default_parser_list = sys.registry.getProperty(_key).split(\",\")\n\n\n\n# --- Internal utility methods used by make_parser\n\n\ndel sys\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def parse(source, handler, errorHandler=ErrorHandler()):\n parser = make_parser()\n parser.setContentHandler(handler)\n parser.setErrorHandler(errorHandler)\n parser.parse(source)", "metadata": "root.parse", "header": "['module', '___EOS___']", "index": 29 }, { "content": "def parseString(string, handler, errorHandler=ErrorHandler()):\n try:\n from cStringIO import StringIO\n except ImportError:\n from StringIO import StringIO\n\n if errorHandler is None:\n errorHandler = ErrorHandler()\n parser = make_parser()\n parser.setContentHandler(handler)\n parser.setErrorHandler(errorHandler)\n\n inpsrc = InputSource()\n inpsrc.setByteStream(StringIO(string))\n parser.parse(inpsrc)", "metadata": "root.parseString", "header": "['module', '___EOS___']", "index": 35 }, { "content": "def make_parser(parser_list = []):\n \"\"\"Creates and returns a SAX parser.\n\n Creates the first parser it is able to instantiate of the ones\n given in the list created by doing parser_list +\n default_parser_list. The lists must contain the names of Python\n modules containing both a SAX parser and a create_parser function.\"\"\"\n\n for parser_name in parser_list + default_parser_list:\n try:\n return _create_parser(parser_name)\n except ImportError,e:\n import sys\n if sys.modules.has_key(parser_name):\n # The parser module was found, but importing it\n # failed unexpectedly, pass this exception through\n raise\n except SAXReaderNotAvailable:\n # The parser module detected that it won't work properly,\n # so try the next one\n pass\n\n raise SAXReaderNotAvailable(\"No parsers found\", None)", "metadata": "root.make_parser", "header": "['module', '___EOS___']", "index": 71 }, { "content": "def _create_parser(parser_name):\n drv_module = __import__(parser_name,{},{},['create_parser'])\n return drv_module.create_parser()", "metadata": "root._create_parser", "header": "['module', '___EOS___']", "index": 97 } ]	[ { "span": "from handler import ContentHandler, ErrorHandler", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 48 }, { "span": "from _exceptions import SAXException, SAXNotRecognizedException, \\\n SAXParseException, SAXNotSupportedException, \\\n SAXReaderNotAvailable", "start_line": 24, "start_column": 0, "end_line": 26, "end_column": 45 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\"\"\"", "Simple", " ", "API", " ", "for", " ", "XML", " ", "(", "SA", "X", ")", " ", "implementation", " ", "for", " ", "Pyth", "on", ".", "\\", "10", ";", "\\", "10", ";", "Thi", "s", " ", "module", " ", "provide", "s", " ", "an", " ", "implementation", " ", "of", " ", "the", " ", "SA", "X", " ", "2", " ", "interface", ";", "\\", "10", ";", "informati", "on", " ", "abo", "ut", " ", "the", " ", "Ja", "va", " ", "version", " ", "of", " ", "the", " ", "interface", " ", "can", " ", "be", " ", "found", " ", "at", "\\", "10", ";", "http", "://", "www", ".", "me", "ggi", "nso", "n", ".", "com", "/", "SA", "X", "/.", 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Except block handles 'BaseException'	GoogleCloudPlatform/python-compat-runtime/appengine-compat/exported_appengine_sdk/google/appengine/tools/appcfg.py	[ { "content": " def LogClientDeploy(self, runtime, start_time_usec, success):\n \"\"\"Logs a client deployment attempt.\n\n Args:\n runtime: The runtime for the app being deployed.\n start_time_usec: The start time of the deployment in micro seconds.\n success: True if the deployment succeeded otherwise False.\n \"\"\"\n if not self.usage_reporting:\n logging.info('Skipping usage reporting.')\n return\n end_time_usec = self.GetCurrentTimeUsec()\n try:\n info = client_deployinfo.ClientDeployInfoExternal(\n runtime=runtime,\n start_time_usec=start_time_usec,\n end_time_usec=end_time_usec,\n requests=self.requests,\n success=success,\n sdk_version=self.GetSdkVersion())\n self.Send('/api/logclientdeploy', info.ToYAML())\n except BaseException, e:\n logging.debug('Exception logging deploy info continuing - %s', e)", "metadata": 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Unused import	cjerdonek/open-rcv/openrcv/scripts/run.py	[ { "content": "#\n# Copyright (c) 2014 Chris Jerdonek. All rights reserved.\n#\n# Permission is hereby granted, free of charge, to any person obtaining a\n# copy of this software and associated documentation files (the \"Software\"),\n# to deal in the Software without restriction, including without limitation\n# the rights to use, copy, modify, merge, publish, distribute, sublicense,\n# and/or sell copies of the Software, and to permit persons to whom the\n# Software is furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included\n# in all copies or substantial portions of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL\n# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER\n# DEALINGS IN THE SOFTWARE.\n#\n\nimport argparse2 as argparse\nfrom contextlib import contextmanager\nimport logging\nimport os\nimport sys\nfrom textwrap import dedent\nfrom traceback import format_exc\n\nimport colorlog\n\nfrom openrcv.scripts.argparse import (parse_log_level, HelpRequested,\n UsageException)\n\n\nEXIT_STATUS_SUCCESS = 0\nEXIT_STATUS_FAIL = 1\nEXIT_STATUS_USAGE_ERROR = 2\n\nPROG_NAME = os.path.basename(sys.argv[0])\n\nlog = logging.getLogger(PROG_NAME)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# TODO: test the UsageException code path.\n\n\n# We follow most of Guido van Rossum's 2003 advice regarding main()\n# functions (though we choose _main() as the function that returns an exit\n# status rather than main()):\n# http://www.artima.com/weblogs/viewpost.jsp?thread=4829\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class DisplayNameFilter(object):\n\n \"\"\"A logging filter that sets display_name.\"\"\"\n", "metadata": "root.DisplayNameFilter", "header": "['module', '___EOS___']", "index": 45 }, { "content": " def filter(self, record):\n record.display_name = record.name\n return True", "metadata": "root.DisplayNameFilter.filter", "header": "['class', 'DisplayNameFilter', '(', 'object', ')', ':', '___EOS___']", "index": 49 }, { "content": "class TruncatedDisplayNameFilter(object):\n\n \"\"\"A logging filter that sets a truncated display_name.\"\"\"\n", "metadata": "root.TruncatedDisplayNameFilter", "header": "['module', '___EOS___']", "index": 54 }, { "content": " def filter(self, record):\n parts = record.name.split(\".\")\n if len(parts) <= 3:\n display_name = record.name\n else:\n # For example, \"a.b.c.d\" becomes \"a.b...d\".\n display_name = '.'.join(parts[:2] + ['.', parts[-1]])\n record.display_name = display_name\n return True", "metadata": "root.TruncatedDisplayNameFilter.filter", "header": "['class', 'TruncatedDisplayNameFilter', '(', 'object', ')', ':', '___EOS___']", "index": 58 }, { "content": "def get_filter(level):\n if level <= logging.DEBUG:\n cls = DisplayNameFilter\n else:\n cls = TruncatedDisplayNameFilter\n return cls()", "metadata": "root.get_filter", "header": "['module', '___EOS___']", "index": 69 }, { "content": "def make_formatter():\n # Prefix log messages unobtrusively with \"log\" to distinguish log\n # messages more obviously from other text sent to the error stream.\n format_string = (\"%(bg_black)s%(log_color)slog: %(display_name)s: \"\n \"[%(levelname)s]%(reset)s %(message)s\")\n colors = colorlog.default_log_colors\n colors['DEBUG'] = 'white'\n formatter = colorlog.ColoredFormatter(format_string, log_colors=colors)\n return formatter", "metadata": "root.make_formatter", "header": "['module', '___EOS___']", "index": 77 }, { "content": "def make_log_handler(level, file_=None):\n if file_ is None:\n file_ = sys.stderr\n\n # If file_ is None, StreamHandler uses sys.stderr.\n handler = logging.StreamHandler(file_)\n # TODO: can we delete this code comment? Is there any reason\n # to set this handler to a level different from the root logger?\n #handler.setLevel(level)\n\n filter_ = get_filter(level)\n handler.addFilter(filter_)\n\n formatter = make_formatter()\n handler.setFormatter(formatter)\n\n return handler", "metadata": "root.make_log_handler", "header": "['module', '___EOS___']", "index": 87 }, { "content": "@contextmanager\ndef log_config(level, file_=None):\n \"\"\"\n A context manager to configure logging and then undo the configuration.\n\n Undoing the configuration is useful for testing, since otherwise\n many log handlers might accumulate during the course of testing,\n due to successive calls to this method.\n\n Arguments:\n\n level: lowest logging level to log.\n file_: the file object to use for logging (e.g. sys.stderr).\n\n \"\"\"\n if level is None:\n level = LOG_LEVEL_DEFAULT\n root = logging.getLogger()\n # If logging was already configured (e.g. at the outset of a test run),\n # then let's not change the root logging level.\n # TODO: simplify this logic (e.g. we should not need \"if\" logic).\n already_configured = root.hasHandlers()\n handler = make_log_handler(level, file_=file_)\n root.addHandler(handler)\n if not already_configured:\n root.setLevel(level)\n log.debug(\"root logger level set to: %r\" % logging.getLevelName(level))\n log.debug(\"a logging handler was added\")\n yield\n root.removeHandler(handler)", "metadata": "root.log_config", "header": "['module', '___EOS___']", "index": 106 }, { "content": "def make_usage_error(msg, help_options):\n text = dedent(\"\"\"\\\n Command-line usage error: {!s}\n\n Pass {!s} for help documentation and available options.\"\"\").format(msg, help_options)\n return text", "metadata": "root.make_usage_error", "header": "['module', '___EOS___']", "index": 138 }, { "content": "def print_usage_error(parser, msg, file_=None):\n if file_ is None:\n file_ = sys.stderr\n if len(sys.argv) == 1:\n parser.print_help()\n parser.print_usage(file_)\n text = make_usage_error(msg, parser.option_help.display(' or '))\n log.error(text)", "metadata": "root.print_usage_error", "header": "['module', '___EOS___']", "index": 146 }, { "content": "def non_exiting_main(parser, argv, stdout=None, log_file=None):\n \"\"\"\n Run the program, and return the exit status without exiting.\n\n Arguments:\n parser: an argparse.ArgumentParser object.\n\n \"\"\"\n args = argv[1:]\n log_level = parser.safe_get_log_level(args)\n\n if stdout is None:\n stdout = sys.stdout\n with log_config(level=log_level, file_=log_file):\n log.debug(\"argv: %r\" % argv)\n try:\n ns = parser.parse_args(args=args) # Namespace object\n log.debug(\"ns: %r\" % ns)\n # Make no args default to running help.\n try:\n # There seems to be a bug in argparse where the parent\n # parser's default run_command is used for args like\n # \"rcv randcontest\" (when nothing is after randcontest),\n # when parser.set_defaults(run_command=...) is used to set\n # the default on the parent parser. Thus we use try-except\n # here instead. I believe this is the issue:\n # http://bugs.python.org/issue9351\n command = ns.run_command\n except AttributeError:\n raise HelpRequested(parser=parser)\n output = command(ns, stdout=stdout)\n if output is not None:\n stdout.write(output)\n status = EXIT_STATUS_SUCCESS\n except HelpRequested as exc:\n parser = exc.parser\n parser.print_help(file=stdout)\n status = EXIT_STATUS_SUCCESS\n except UsageException as exc:\n # As of Python 3.4, argparse.ArgumentParser's error() implementation\n # looked like this--\n # self.print_usage(_sys.stderr)\n # args = {'prog': self.prog, 'message': message}\n # self.exit(2, _('%(prog)s: error: %(message)s\\n') % args)\n err_args, parser = exc.args, exc.parser\n assert len(err_args) == 1\n print_usage_error(parser, err_args[0], file_=log_file)\n status = EXIT_STATUS_USAGE_ERROR\n # TODO: decide whether to handle the error case manually, or let\n # Python do it by default. One problem with the former\n # is that exceptions don't show up during test failures.\n # except Exception as err:\n #\n # # Log the full exception info for \"unexpected\" exceptions.\n # log.error(format_exc())\n # status = EXIT_STATUS_FAIL\n\n return status", "metadata": "root.non_exiting_main", "header": "['module', '___EOS___']", "index": 157 }, { "content": "def main(parser, argv=None):\n if argv is None:\n argv = sys.argv\n status = non_exiting_main(parser, argv)\n sys.exit(status)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 221 } ]	[ { "span": "import argparse2 as argparse", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 28 }, { "span": "from traceback import format_exc", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 32 }, { "span": "from openrcv.scripts.argparse import (parse_log_level, HelpRequested,\n UsageException)", "start_line": 32, "start_column": 0, "end_line": 33, "end_column": 53 } ]	[]	1	false	[ 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Unused import	deanhiller/databus/webapp/play1.3.x/framework/pym/play/commands/war.py	[ { "content": "import sys\nimport os\nimport getopt\nimport shutil\n\nimport play.commands.precompile\nfrom play.utils import \n\nCOMMANDS = [\"war\"]\n\nHELP = {\n 'war': 'Export the application as a standalone WAR archive'\n}\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def execute(*kargs):\n\n command = kargs.get(\"command\")\n app = kargs.get(\"app\")\n args = kargs.get(\"args\")\n env = kargs.get(\"env\")\n\n war_path = None\n war_zip_path = None\n war_exclusion_list = []\n try:\n optlist, args = getopt.getopt(args, 'o:', ['output=', 'zip','exclude='])\n for o, a in optlist:\n if o in ('-o', '--output'):\n war_path = os.path.normpath(os.path.abspath(a))\n for o, a in optlist:\n if o in ('--zip'):\n war_zip_path = war_path + '.war'\n if o in ('--exclude'):\n war_exclusion_list = a.split(':')\n print \"~ Excluding these directories :\"\n for excluded in war_exclusion_list:\n print \"~ %s\" %excluded\n except getopt.GetoptError, err:\n print \"~ %s\" % str(err)\n print \"~ Please specify a path where to generate the WAR, using the -o or --output option.\"\n print \"~ To exclude some directories, use the --exclude option and ':'-separator (eg: --exclude .svn:target:logs:tmp).\"\n print \"~ \"\n sys.exit(-1)\n\n if not war_path:\n print \"~ Oops. Please specify a path where to generate the WAR, using the -o or --output option\"\n print \"~ To exclude some directories, use the --exclude option and ':'-separator (eg: --exclude .svn:target:logs:tmp).\"\n print \"~\"\n sys.exit(-1)\n\n if os.path.exists(war_path) and not os.path.exists(os.path.join(war_path, 'WEB-INF')):\n print \"~ Oops. The destination path already exists but does not seem to host a valid WAR structure\"\n print \"~\"\n sys.exit(-1)\n\n if isParentOf(app.path, war_path) and not isExcluded(war_path, war_exclusion_list):\n print \"~ Oops. Please specify a destination directory outside of the application\"\n print \"~ or exclude war destination directory using the --exclude option and ':'-separator \"\n print \"~ (eg: --exclude .svn:target:logs:tmp).\"\n print \"~\"\n sys.exit(-1)\n\n # Precompile first\n precompilation_result = play.commands.precompile.execute(command=command, app=app, args=args, env=env)\n\n if precompilation_result != 0:\n print \"~ Please fix compilation errors before packaging WAR\"\n print \"~\"\n sys.exit(precompilation_result)\n\n # Package\n package_as_war(app, env, war_path, war_zip_path, war_exclusion_list)\n\n print \"~ Done !\"\n print \"~\"\n print \"~ You can now load %s as a standard WAR into your servlet container\" % (os.path.normpath(war_path))\n print \"~ You can't use play standard commands to run/stop/debug the WAR application...\"\n print \"~ ... just use your servlet container commands instead\"\n print \"~\"\n print \"~ Have fun!\"\n print \"~\"", "metadata": "root.execute", 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Unused import	coreemu/core/daemon/core/emane/nodes.py	[ { "content": "#\n# CORE\n# Copyright (c)2010-2014 the Boeing Company.\n# See the LICENSE file included in this distribution.\n#\n# author: Jeff Ahrenholz <[email protected]>\n#\n'''\nnodes.py: definition of an EmaneNode class for implementing configuration\ncontrol of an EMANE emulation. An EmaneNode has several attached NEMs that\nshare the same MAC+PHY model.\n'''\n\nimport sys\nimport os.path\n\nfrom core.api import coreapi\nfrom core.coreobj import PyCoreNet\ntry:\n from emanesh.events import EventService\n from emanesh.events import LocationEvent\nexcept Exception, e:\n pass\n\ntry:\n import emaneeventservice\n import emaneeventlocation\nexcept Exception, e:\n ''' Don't require all CORE users to have EMANE libeventservice and its\n Python bindings installed.\n '''\n pass\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class EmaneNet(PyCoreNet):\n ''' EMANE network base class.\n '''\n apitype = coreapi.CORE_NODE_EMANE\n linktype = coreapi.CORE_LINK_WIRELESS\n type = \"wlan\" # icon used", "metadata": "root.EmaneNet", "header": "['module', '___EOS___']", "index": 33 }, { "content": "class EmaneNode(EmaneNet):\n ''' EMANE node contains NEM configuration and causes connected nodes\n to have TAP interfaces (instead of VEth). These are managed by the\n Emane controller object that exists in a session.\n '''\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.EmaneNode", "header": "['module', '___EOS___']", "index": 40 }, { "content": " def __init__(self, session, objid = None, name = None, verbose = False,\n start = True):\n PyCoreNet.__init__(self, session, objid, name, verbose, start)\n self.verbose = verbose\n self.conf = \"\"\n self.up = False\n self.nemidmap = {}\n self.model = None\n self.mobility = None", "metadata": "root.EmaneNode.__init__", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 45 }, { "content": " def linkconfig(self, netif, bw = None, delay = None,\n loss = None, duplicate = None, jitter = None, netif2 = None):\n ''' The CommEffect model supports link configuration.\n '''\n if not self.model:\n return\n return self.model.linkconfig(netif=netif, bw=bw, delay=delay, loss=loss,\n duplicate=duplicate, jitter=jitter, netif2=netif2)", "metadata": "root.EmaneNode.linkconfig", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 55 }, { "content": " def config(self, conf):\n #print \"emane\", self.name, \"got config:\", conf\n self.conf = conf", "metadata": "root.EmaneNode.config", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 64 }, { "content": " def shutdown(self):\n pass", "metadata": "root.EmaneNode.shutdown", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 68 }, { "content": " def link(self, netif1, netif2):\n pass", "metadata": "root.EmaneNode.link", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 71 }, { "content": " def unlink(self, netif1, netif2):\n pass", "metadata": "root.EmaneNode.unlink", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 74 }, { "content": " def setmodel(self, model, config):\n ''' set the EmaneModel associated with this node\n '''\n if (self.verbose):\n self.info(\"adding model %s\" % model._name)\n if model._type == coreapi.CORE_TLV_REG_WIRELESS:\n # EmaneModel really uses values from ConfigurableManager\n # when buildnemxml() is called, not during init()\n self.model = model(session=self.session, objid=self.objid,\n verbose=self.verbose)\n elif model._type == coreapi.CORE_TLV_REG_MOBILITY:\n self.mobility = model(session=self.session, objid=self.objid,\n verbose=self.verbose, values=config)", "metadata": "root.EmaneNode.setmodel", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 77 }, { "content": " def setnemid(self, netif, nemid):\n ''' Record an interface to numerical ID mapping. The Emane controller\n object manages and assigns these IDs for all NEMs.\n '''\n self.nemidmap[netif] = nemid", "metadata": "root.EmaneNode.setnemid", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 91 }, { "content": " def getnemid(self, netif):\n ''' Given an interface, return its numerical ID.\n '''\n if netif not in self.nemidmap:\n return None\n else:\n return self.nemidmap[netif]", "metadata": "root.EmaneNode.getnemid", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 97 }, { "content": " def getnemnetif(self, nemid):\n ''' Given a numerical NEM ID, return its interface. This returns the\n first interface that matches the given NEM ID.\n '''\n for netif in self.nemidmap:\n if self.nemidmap[netif] == nemid:\n return netif\n return None", "metadata": "root.EmaneNode.getnemnetif", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 105 }, { "content": " def netifs(self, sort=True):\n ''' Retrieve list of linked interfaces sorted by node number.\n '''\n return sorted(self._netif.values(), key=lambda ifc: ifc.node.objid)", "metadata": "root.EmaneNode.netifs", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 114 }, { "content": " def buildplatformxmlentry(self, doc):\n ''' Return a dictionary of XML elements describing the NEMs\n connected to this EmaneNode for inclusion in the platform.xml file.\n '''\n ret = {}\n if self.model is None:\n self.info(\"warning: EmaneNode %s has no associated model\" % \\\n self.name)\n return ret\n for netif in self.netifs():\n # <nem name=\"NODE-001\" definition=\"rfpipenem.xml\">\n nementry = self.model.buildplatformxmlnementry(doc, self, netif)\n # <transport definition=\"transvirtual.xml\" group=\"1\">\n # <param name=\"device\" value=\"n1.0.158\" />\n # </transport>\n trans = self.model.buildplatformxmltransportentry(doc, self, netif)\n nementry.appendChild(trans)\n ret[netif] = nementry\n\n return ret", "metadata": "root.EmaneNode.buildplatformxmlentry", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 119 }, { "content": " def buildnemxmlfiles(self, emane):\n ''' Let the configured model build the necessary nem, mac, and phy\n XMLs.\n '''\n if self.model is None:\n return\n # build XML for overall network (EmaneNode) configs\n self.model.buildnemxmlfiles(emane, ifc=None)\n # build XML for specific interface (NEM) configs\n need_virtual = False\n need_raw = False\n vtype = \"virtual\"\n rtype = \"raw\"\n for netif in self.netifs():\n self.model.buildnemxmlfiles(emane, netif)\n if \"virtual\" in netif.transport_type:\n need_virtual = True\n vtype = netif.transport_type\n else:\n need_raw = True\n rtype = netif.transport_type\n # build transport XML files depending on type of interfaces involved\n if need_virtual:\n self.buildtransportxml(emane, vtype)\n if need_raw:\n self.buildtransportxml(emane, rtype)", "metadata": "root.EmaneNode.buildnemxmlfiles", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 140 }, { "content": " def buildtransportxml(self, emane, type):\n ''' Write a transport XML file for the Virtual or Raw Transport.\n '''\n transdoc = emane.xmldoc(\"transport\")\n trans = transdoc.getElementsByTagName(\"transport\").pop()\n trans.setAttribute(\"name\", \"%s Transport\" % type.capitalize())\n trans.setAttribute(\"library\", \"trans%s\" % type.lower())\n trans.appendChild(emane.xmlparam(transdoc, \"bitrate\", \"0\"))\n\n flowcontrol = False\n names = self.model.getnames()\n values = emane.getconfig(self.objid, self.model._name,\n self.model.getdefaultvalues())[1]\n if \"flowcontrolenable\" in names and values:\n i = names.index(\"flowcontrolenable\")\n if self.model.booltooffon(values[i]) == \"on\":\n flowcontrol = True\n\n if \"virtual\" in type.lower():\n if os.path.exists(\"/dev/net/tun_flowctl\"):\n trans.appendChild(emane.xmlparam(transdoc, \"devicepath\",\n \"/dev/net/tun_flowctl\"))\n else:\n trans.appendChild(emane.xmlparam(transdoc, \"devicepath\",\n \"/dev/net/tun\"))\n if flowcontrol:\n trans.appendChild(emane.xmlparam(transdoc, \"flowcontrolenable\",\n \"on\"))\n emane.xmlwrite(transdoc, self.transportxmlname(type.lower()))", "metadata": "root.EmaneNode.buildtransportxml", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 167 }, { "content": " def transportxmlname(self, type):\n ''' Return the string name for the Transport XML file,\n e.g. 'n3transvirtual.xml'\n '''\n return \"n%strans%s.xml\" % (self.objid, type)", "metadata": "root.EmaneNode.transportxmlname", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 197 }, { "content": " def installnetifs(self, do_netns=True):\n ''' Install TAP devices into their namespaces. This is done after\n EMANE daemons have been started, because that is their only chance\n to bind to the TAPs.\n '''\n if self.session.emane.genlocationevents() and \\\n self.session.emane.service is None:\n warntxt = \"unable to publish EMANE events because the eventservice \"\n warntxt += \"Python bindings failed to load\"\n self.session.exception(coreapi.CORE_EXCP_LEVEL_ERROR, self.name,\n self.objid, warntxt)\n\n for netif in self.netifs():\n if do_netns and \"virtual\" in netif.transport_type.lower():\n netif.install()\n netif.setaddrs()\n if not self.session.emane.genlocationevents():\n netif.poshook = None\n continue\n # at this point we register location handlers for generating\n # EMANE location events\n netif.poshook = self.setnemposition\n (x,y,z) = netif.node.position.get()\n self.setnemposition(netif, x, y, z)", "metadata": "root.EmaneNode.installnetifs", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 204 }, { "content": " def deinstallnetifs(self):\n ''' Uninstall TAP devices. This invokes their shutdown method for\n any required cleanup; the device may be actually removed when\n emanetransportd terminates.\n '''\n for netif in self.netifs():\n if \"virtual\" in netif.transport_type.lower():\n netif.shutdown()\n netif.poshook = None", "metadata": "root.EmaneNode.deinstallnetifs", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 229 }, { "content": " def setnemposition(self, netif, x, y, z):\n ''' Publish a NEM location change event using the EMANE event service.\n '''\n if self.session.emane.service is None:\n if self.verbose:\n self.info(\"position service not available\")\n return\n nemid = self.getnemid(netif)\n ifname = netif.localname\n if nemid is None:\n self.info(\"nemid for %s is unknown\" % ifname)\n return\n (lat, long, alt) = self.session.location.getgeo(x, y, z)\n if self.verbose:\n self.info(\"setnemposition %s (%s) x,y,z=(%d,%d,%s)\"\n \"(%.6f,%.6f,%.6f)\" % \\\n (ifname, nemid, x, y, z, lat, long, alt))\n if self.session.emane.version >= self.session.emane.EMANE091:\n event = LocationEvent()\n else:\n event = emaneeventlocation.EventLocation(1)\n # altitude must be an integer or warning is printed\n # unused: yaw, pitch, roll, azimuth, elevation, velocity\n alt = int(round(alt))\n if self.session.emane.version >= self.session.emane.EMANE091:\n event.append(nemid, latitude=lat, longitude=long, altitude=alt)\n self.session.emane.service.publish(0, event)\n else:\n event.set(0, nemid, lat, long, alt)\n self.session.emane.service.publish(emaneeventlocation.EVENT_ID,\n emaneeventservice.PLATFORMID_ANY,\n emaneeventservice.NEMID_ANY,\n emaneeventservice.COMPONENTID_ANY,\n event.export())", "metadata": "root.EmaneNode.setnemposition", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 239 }, { "content": " def setnempositions(self, moved_netifs):\n ''' Several NEMs have moved, from e.g. a WaypointMobilityModel\n calculation. Generate an EMANE Location Event having several\n entries for each netif that has moved.\n '''\n if len(moved_netifs) == 0:\n return\n if self.session.emane.service is None:\n if self.verbose:\n self.info(\"position service not available\")\n return\n\n if self.session.emane.version >= self.session.emane.EMANE091:\n event = LocationEvent()\n else:\n event = emaneeventlocation.EventLocation(len(moved_netifs))\n i = 0\n for netif in moved_netifs:\n nemid = self.getnemid(netif)\n ifname = netif.localname\n if nemid is None:\n self.info(\"nemid for %s is unknown\" % ifname)\n continue\n (x, y, z) = netif.node.getposition()\n (lat, long, alt) = self.session.location.getgeo(x, y, z)\n if self.verbose:\n self.info(\"setnempositions %d %s (%s) x,y,z=(%d,%d,%s)\"\n \"(%.6f,%.6f,%.6f)\" % \\\n (i, ifname, nemid, x, y, z, lat, long, alt))\n # altitude must be an integer or warning is printed\n alt = int(round(alt))\n if self.session.emane.version >= self.session.emane.EMANE091:\n event.append(nemid, latitude=lat, longitude=long, altitude=alt)\n else:\n event.set(i, nemid, lat, long, alt)\n i += 1\n\n if self.session.emane.version >= self.session.emane.EMANE091:\n self.session.emane.service.publish(0, event)\n else:\n self.session.emane.service.publish(emaneeventlocation.EVENT_ID,\n emaneeventservice.PLATFORMID_ANY,\n emaneeventservice.NEMID_ANY,\n emaneeventservice.COMPONENTID_ANY,\n event.export())", "metadata": "root.EmaneNode.setnempositions", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 274 } ]	[ { "span": "import sys", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 10 }, { "span": "from emanesh.events import EventService", "start_line": 19, "start_column": 4, "end_line": 19, "end_column": 43 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", "_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "CORE", "_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Copy", "right", 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Except block handles 'BaseException'	CountZer0/PipelineConstructionSet/python/maya/site-packages/pymel-1.0.5/pymel/util/objectParser.py	[ { "content": "def currentfn() :\n try :\n return sys._getframe(1).f_code.co_name\n except :\n pass", "metadata": "root.currentfn", "header": "['module', '___EOS___']", "index": 38 }, { "content": " @classmethod\n def classparserbuild(cls, kwargs):\n \"\"\" Inits class Parser, all instances of a Parsed class share the same yacc parser object \"\"\"\n\n clsname = cls.__name__\n try :\n # class declaration specifies a parser class\n parser = cls._parser\n except :\n # default rule\n parsername = cls.__name__+\"Parser\"\n parser = Parser.classes.get(parsername, None)\n cls._parser = parser\n warnings.warn (\"could not read '_parser' for %s, building Parser name %s from Parsed class name %s\" % (cls, parsername, clsname), UserWarning)\n\n if parser is not None :\n # if parser hasn't been built yet, build it\n if not isinstance(parser, Parser) :\n # parser is a class\n if inspect.isclass(parser) :\n parsername = parser.__name__\n if not issubclass (parser, Parser):\n raise ValueError, \"Parser %s specified in Parsed class %s is not a Parser class\" % (parsername, cls.__name__)\n # parser is a string\n elif parser in Parser.classes :\n parsername = parser\n parser = Parser.classes[parsername]\n else :\n raise ValueError, \"Invalid Parser specification %r in Parsed class %s\" % (parser, cls.__name__)\n\n # build class Parser, replace class _parser by the Parser instance object\n\n # print \"Building parser instance of Parser %s for Parsed class: %s\" % (parser, cls.__name__)\n # replace _parser attribute (which held a Parser class or classname) with parser class instance\n cls._parser = parser()\n cls._parser.build(kwargs)\n # return cls._parser\n else :\n raise TypeError, \"Parsed class %s does not define a parser, check declarations\" % cls.__name__", "metadata": "root.Parsed.classparserbuild", "header": "['class', 'Parsed', '(', 'ProxyUni', ')', ':', '___EOS___']", "index": 98 }, { "content": " def __new__(cls, args, *kwargs):\n \"\"\" Creation of a Parsed object from a LexToken, other Parsed of compatible type or string,\n if a string is passed it will be parsed and checked for compatibility with this Parsed type \"\"\"\n\n debug = kwargs.get('debug', verbose())\n # type checking\n data = None\n if args :\n if len(args) == 1:\n data = args[0]\n else :\n data = tuple(args)\n\n # some data (when initializing from single arg) can define the type of Parsed object to be created\n ptype = None\n if data is None :\n # only authorize Empty to be built without arguments\n ptype = 'Empty'\n elif isinstance(data, lex.LexToken) :\n ptype = kwargs.get('type', data.type)\n elif isinstance(data, Parsed) :\n ptype = data.__class__\n # can override type with the keyword 'type'\n ptype=kwargs.get('type', ptype)\n\n if (cls is Parsed or cls is Token) : #issubclass(cls, Token) ):\n if ptype is not None :\n if verbose():\n print \"__new__ called on Parsed/Token %s with type %r\" % (cls.__name__, ptype)\n newcls = Parsed.classes.get(ptype, None)\n # can only specify an existing subclass of cls\n if newcls is None :\n raise TypeError, \"Type %s does not correspond to any existing Parsed sub-class (%s does not exist)\" % (ptype, cls.__name__ )\n else :\n clsname = newcls.__name__\n if not issubclass(newcls, cls) :\n raise TypeError, \"Type %s would create a class %s that is not a sub-class of the class %s that __new__ was called on\" % (ptype, clsname, cls.__name__)\n else :\n raise TypeError, \"Class %s is an abstract class and can't be created directly, you must specify a valid sub-type\" % (cls.__name__)\n else :\n if verbose():\n print \"__new__ called on explicit class %s\" % (cls.__name__)\n clsname = cls.__name__\n newcls = cls\n\n # print \"Creating new instance of Parsed class: %r\" % newcls\n\n # process arguments and build, check arguments compatibility with that type\n pos = None\n sub = []\n valid = False\n value = data\n\n #if debug : print \"VALUE1\", value, repr(value)\n\n # special case for LexToken\n if isinstance(data, lex.LexToken) :\n if issubclass(newcls, Token) :\n # from a unique lex Token, do not check if also creating a Token\n sub = []\n pos = data.lexpos\n value = data.value\n valid = True\n else :\n # build a Token from it\n value = Token(data.value, ptype=data.type, pos=data.pos)\n\n if data is None :\n # Tokens can have default value to allow initialization without arguments\n try :\n value = newcls.default()\n valid = True\n except :\n valid = False\n elif isinstance(data, newcls) :\n #if debug : print \"IS INSTANCE\", data, repr(data)\n # from a similar class, copy it\n sub = data.sub\n pos = data.pos\n valid = data.isValid()\n value = unicode(data)\n elif newcls.accepts(data) :\n #if debug : print \"ACCEPTS\", data, repr(data)\n # from a compatible Parsed sub class, build the sub list from it\n sub.append(data)\n pos = data.pos\n valid = data.isValid()\n value = unicode(data)\n elif isSequence(data) and not isinstance(data, basestring):\n # building from sub parts, must be of the same type and in class _accepts\n # TODO : use yacc own rules for accepts\n if data :\n valid = True\n p = 0\n for arg in data :\n # converts LexTokens directly\n if isinstance(arg, lex.LexToken) :\n a = Token(arg.value, ptype=arg.type, pos=data.pos)\n else :\n a = arg\n # now check if it's a suitable sub-part or derived class\n if isinstance(a, newcls) :\n sub += a.sub\n elif newcls.accepts(a) :\n sub.append(a)\n else :\n valid = False\n break\n value = u\"\".join(map(unicode, data))\n if valid :\n pos = sub[0].pos\n else :\n sub = []\n else :\n value = ''\n else :\n if debug : print \"REPARSE\", data, repr(data)\n # reparse unless it's a Token we already know the type of\n value = unicode(data)\n if issubclass(newcls, Token) and newcls is not Token :\n sub = []\n pos = 0\n valid = True\n else :\n valid = False\n\n # parse if necessary\n if valid :\n # print \"No reparsing necessary for a resulting value %s (%r)\" % (value, value)\n strvalue = unicode(value)\n elif isinstance(value, basestring) :\n if debug :\n print \"%s: Will need to reparse value %r\" % (clsname, value)\n newcls.classparserbuild(debug=debug)\n if debug : print \"VALUE\", value, type(value)\n result = newcls.classparse(value, debug=debug)\n if debug : print \"RESULT\", result, type(result), isinstance(result, newcls)\n if result is not None and isinstance(result, newcls) :\n strvalue = unicode(result)\n valid = result._valid\n sub = result._sub\n pos = result._pos\n if debug : print \"SUB\", sub\n else :\n strvalue = ''\n valid = False\n else :\n raise TypeError, \"invalid argument(s) %r, cannot be parsed to create a Parsed object of type %s\" % (value, clsname)\n\n if valid :\n # create a unicode object with appropriate string value\n newobj = super(Parsed, cls).__new__(newcls)\n newobj._name = strvalue\n #if debug: print \"NAME\", newobj, type(newobj), sub#, inspect.getmro(newobj)\n # set instance attributes\n newobj._sub = tuple(sub)\n newobj._valid = valid\n # override for pos\n pos = kwargs.get('pos', pos)\n if pos is not None :\n pos += kwargs.get('offset', 0)\n\n if pos is None or (isinstance(pos, int) and pos>=0) :\n newobj._pos = pos\n else :\n raise ValueError, \"A Parsed pos can only be None or an unsigned int, %r invalid\" % pos\n\n return newobj", "metadata": "root.Parsed.__new__", "header": "['class', 'Parsed', '(', 'ProxyUni', ')', ':', '___EOS___']", "index": 231 }, { "content": "def isParsedClass (x) :\n try :\n return issubclass(x, Parsed)\n except :\n return False", "metadata": "root.isParsedClass", "header": "['module', '___EOS___']", "index": 634 }, { "content": "def isParserClass (x) :\n try :\n return issubclass(x, Parser)\n except :\n return False", "metadata": "root.isParserClass", "header": "['module', '___EOS___']", "index": 639 } ]	[ { "span": "except :", "start_line": 41, "start_column": 4, "end_line": 41, "end_column": 12 }, { "span": "except :", "start_line": 106, "start_column": 8, "end_line": 106, "end_column": 16 }, { "span": "except :", "start_line": 303, "start_column": 12, "end_line": 303, "end_column": 20 }, { "span": "except :", "start_line": 637, "start_column": 4, "end_line": 637, "end_column": 12 }, { "span": "except :", "start_line": 642, "start_column": 4, "end_line": 642, "end_column": 12 } ]	[]	1	true	[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "current", "fn_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "sys_", "._", "\\u", "getframe_", "(_", "1_", ")_", "._", "f", "\\u", "code_", "._", "co", "\\u", "name_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", 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Except block handles 'BaseException'	zorna/zorna/zorna/forms/api.py	[ { "content": "def isUserManager(request, slug):\n try:\n fw = FormsWorkspace.objects.get(slug=slug)\n ao = get_allowed_objects(request.user, FormsWorkspace, 'manager')\n if fw.pk in ao:\n return fw\n else:\n return False\n except:\n return False", "metadata": "root.isUserManager", "header": "['module', '___EOS___']", "index": 19 }, { "content": "def forms_get_form_edit_entry(request, entry):\n try:\n entry = FormsFormEntry.objects.get(pk=entry)\n form = entry.form\n except:\n return None\n\n rget = request.GET # {'lot.designation': '110'}\n args = (form, request.POST or None, request.FILES or None)\n form_for_form = FormForForm(args, instance=entry, rget=rget)\n return form_for_form", "metadata": "root.forms_get_form_edit_entry", "header": "['module', '___EOS___']", "index": 68 }, { "content": "def forms_form_browse_entries(request, slug, entries=None):\n try:\n form = FormsForm.objects.select_related(depth=1).get(slug=slug)\n except:\n return None\n\n # dont't verify access, caller must do it for us\n extra_context = {}\n kwargs = {}\n sort = ''\n if entries:\n kwargs['entries'] = entries\n extra_context['filters'] = {}\n extra_context['field_filters'] = []\n form_fields = form.fields.select_related().all().order_by('label')\n form.fields_reference = {}\n hidden = request.GET.get('hidden', '')\n if hidden:\n hidden = hidden.split(',')\n else:\n hidden = []\n for f in form_fields:\n fl = request.GET.get(f.slug, None)\n if fl:\n kwargs[f.slug] = smart_str(fl)\n if f.for_sort:\n sort = f.slug\n if not f.visible_in_list:\n hidden.append(f.slug)\n extra_context['params'] = urllib.urlencode(kwargs)\n\n kwargs['f'] = request.GET.get('f', '')\n kwargs['q'] = request.GET.get('q', '')\n kwargs['o'] = request.GET.get('o', sort)\n kwargs['ot'] = request.GET.get('ot', 'asc')\n kwargs['where'] = request.GET.get('where', '')\n\n extra_context['parents'] = []\n if kwargs['where']:\n try:\n bte = kwargs['where'].split(':')\n extra_context['where_entry_id'] = entry_id = bte[1]\n bte = bte[0].split('.')\n extra_context['where_form_slug'] = form_slug = bte[0]\n extra_context['where_form_field'] = form_field = bte[1]\n while entry_id:\n e = FormsFormEntry.objects.select_related().get(\n pk=entry_id, form__slug=form_slug)\n c, r = forms_get_entry(e)\n extra_context['parents'].append({'row': r[\n form_field], 'entry': e})\n hidden.append(r[form_field]['slug'])\n if not e.form.bind_to_entry:\n break\n bte = e.form.bind_to_entry.split('.')\n form_slug = bte[0]\n form_field = bte[1]\n entry_id = e.entry.pk\n except Exception as e:\n extra_context['parents'] = []\n extra_context['parents'].reverse()\n kwargs['hidden'] = ','.join(hidden)\n\n columns, entries = forms_get_entries(form, kwargs)\n for f in form_fields:\n if '.' in f.reference and f.is_a(fields.CHOICES):\n fl = request.GET.get(f.slug, None)\n choices = [('', '--- %s ---' % f.label)]\n for e in form.fields_reference[f.pk]:\n choices.append((e[0], e[1]))\n s = forms.Select(choices=choices)\n extra_context['filters'][f.label] = s.render(f.slug, fl, None)\n else:\n extra_context['field_filters'].append([f.label, f.slug])\n if fl:\n kwargs[f.slug] = fl\n\n paginator = Paginator(entries, 25)\n page = int(request.GET.get('page', 1))\n try:\n rows = paginator.page(page)\n except PageNotAnInteger:\n # If page is not an integer, deliver first page.\n rows = paginator.page(1)\n except EmptyPage:\n # If page is out of range (e.g. 9999), deliver last page of results.\n rows = paginator.page(paginator.num_pages)\n\n extra_context['q'] = kwargs['q']\n extra_context['f'] = kwargs['f']\n extra_context['column_filter'] = kwargs['o']\n extra_context['column_order'] = kwargs['ot']\n extra_context['zorna_title_page'] = _(u'Forms')\n extra_context['form'] = form\n extra_context['columns'] = columns\n extra_context['entries'] = entries\n extra_context['rows'] = rows\n extra_context['page'] = page\n extra_context['paginator'] = paginator\n extra_context['where'] = kwargs['where']\n try:\n r = form.bind_to_entry.split('.')\n extra_context['bind_entry_slug'] = r[0]\n extra_context['bind_entry_field'] = r[1]\n except:\n pass\n\n extra_context['where'] = kwargs['where']\n\n return extra_context", "metadata": "root.forms_form_browse_entries", "header": "['module', '___EOS___']", "index": 117 } ]	[ { "span": "except:", "start_line": 27, "start_column": 4, "end_line": 27, "end_column": 11 }, { "span": "except:", "start_line": 72, "start_column": 4, "end_line": 72, "end_column": 11 }, { "span": "except:", "start_line": 120, "start_column": 4, "end_line": 120, "end_column": 11 }, { "span": "except:", "start_line": 221, "start_column": 4, "end_line": 221, "end_column": 11 } ]	[]	1	true	[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "is", "User", "Manager_", "(_", 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Unused import	ardekantur/pyglet/pyglet/input/evdev.py	[ { "content": "#!/usr/bin/env python\n\n'''\n'''\n\n__docformat__ = 'restructuredtext'\n__version__ = '$Id$'\n\nimport ctypes\nimport errno\nimport os\n\nimport pyglet\nfrom pyglet.app.xlib import XlibSelectDevice\nfrom base import Device, Control, RelativeAxis, AbsoluteAxis, Button, Joystick\nfrom base import DeviceOpenException\nfrom evdev_constants import \nfrom evdev_constants import _rel_raw_names, _abs_raw_names, _key_raw_names\n\nc = pyglet.lib.load_library('c')\n\n_IOC_NRBITS = 8\n_IOC_TYPEBITS = 8\n_IOC_SIZEBITS = 14\n_IOC_DIRBITS = 2\n\n_IOC_NRMASK = ((1 << _IOC_NRBITS)-1)\n_IOC_TYPEMASK = ((1 << _IOC_TYPEBITS)-1)\n_IOC_SIZEMASK = ((1 << _IOC_SIZEBITS)-1)\n_IOC_DIRMASK = ((1 << _IOC_DIRBITS)-1)\n\n_IOC_NRSHIFT = 0\n_IOC_TYPESHIFT = (_IOC_NRSHIFT+_IOC_NRBITS)\n_IOC_SIZESHIFT = (_IOC_TYPESHIFT+_IOC_TYPEBITS)\n_IOC_DIRSHIFT = (_IOC_SIZESHIFT+_IOC_SIZEBITS)\n\n_IOC_NONE = 0\n_IOC_WRITE = 1\n_IOC_READ = 2\n\n\n\n\n\ntime_t = ctypes.c_long\nsuseconds_t = ctypes.c_long\n\n\n\n\n\nEVIOCGVERSION = _IOR('E', 0x01, ctypes.c_int)\nEVIOCGID = _IOR('E', 0x02, input_id)\nEVIOCGNAME = _IOR_str('E', 0x06)\nEVIOCGPHYS = _IOR_str('E', 0x07)\nEVIOCGUNIQ = _IOR_str('E', 0x08)\n\n\n_abs_names = {\n ABS_X: AbsoluteAxis.X,\n ABS_Y: AbsoluteAxis.Y,\n ABS_Z: AbsoluteAxis.Z,\n ABS_RX: AbsoluteAxis.RX,\n ABS_RY: AbsoluteAxis.RY,\n ABS_RZ: AbsoluteAxis.RZ,\n ABS_HAT0X: AbsoluteAxis.HAT_X,\n ABS_HAT0Y: AbsoluteAxis.HAT_Y,\n}\n\n_rel_names = {\n REL_X: RelativeAxis.X,\n REL_Y: RelativeAxis.Y,\n REL_Z: RelativeAxis.Z,\n REL_RX: RelativeAxis.RX,\n REL_RY: RelativeAxis.RY,\n REL_RZ: RelativeAxis.RZ,\n REL_WHEEL: RelativeAxis.WHEEL,\n}\n\n\nevent_types = {\n EV_KEY: KEY_MAX,\n EV_REL: REL_MAX,\n EV_ABS: ABS_MAX,\n EV_MSC: MSC_MAX,\n EV_LED: LED_MAX,\n EV_SND: SND_MAX,\n}\n\n\n_devices = {}\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _IOC(dir, type, nr, size):\n return ((dir << _IOC_DIRSHIFT) \|\n (type << _IOC_TYPESHIFT) \|\n (nr << _IOC_NRSHIFT) \|\n (size << _IOC_SIZESHIFT))", "metadata": "root._IOC", "header": "['module', '___EOS___']", "index": 40 }, { "content": "def _IOR(type, nr, struct):\n request = _IOC(_IOC_READ, ord(type), nr, ctypes.sizeof(struct))\n def f(fileno):\n buffer = struct()\n if c.ioctl(fileno, request, ctypes.byref(buffer)) < 0:\n err = ctypes.c_int.in_dll(c, 'errno').value\n raise OSError(err, errno.errorcode[err])\n return buffer\n return f", "metadata": "root._IOR", "header": "['module', '___EOS___']", "index": 46 }, { "content": "def _IOR_len(type, nr):\n def f(fileno, buffer):\n request = _IOC(_IOC_READ, ord(type), nr, ctypes.sizeof(buffer))\n if c.ioctl(fileno, request, ctypes.byref(buffer)) < 0:\n err = ctypes.c_int.in_dll(c, 'errno').value\n raise OSError(err, errno.errorcode[err])\n return buffer\n return f", "metadata": "root._IOR_len", "header": "['module', '___EOS___']", "index": 56 }, { "content": "def _IOR_str(type, nr):\n g = _IOR_len(type, nr)\n def f(fileno, len=256):\n return g(fileno, ctypes.create_string_buffer(len)).value\n return f", "metadata": "root._IOR_str", "header": "['module', '___EOS___']", "index": 65 }, { "content": "class timeval(ctypes.Structure):\n _fields_ = (\n ('tv_sec', time_t),\n ('tv_usec', suseconds_t)\n )", "metadata": "root.timeval", "header": "['module', '___EOS___']", "index": 74 }, { "content": "class input_event(ctypes.Structure):\n _fields_ = (\n ('time', timeval),\n ('type', ctypes.c_uint16),\n ('code', ctypes.c_uint16),\n ('value', ctypes.c_int32)\n )", "metadata": "root.input_event", "header": "['module', '___EOS___']", "index": 80 }, { "content": "class input_id(ctypes.Structure):\n _fields_ = (\n ('bustype', ctypes.c_uint16),\n ('vendor', ctypes.c_uint16),\n ('product', ctypes.c_uint16),\n ('version', ctypes.c_uint16),\n )", "metadata": "root.input_id", "header": "['module', '___EOS___']", "index": 88 }, { "content": "class input_absinfo(ctypes.Structure):\n _fields_ = (\n ('value', ctypes.c_int32),\n ('minimum', ctypes.c_int32),\n ('maximum', ctypes.c_int32),\n ('fuzz', ctypes.c_int32),\n ('flat', ctypes.c_int32),\n )", "metadata": "root.input_absinfo", "header": "['module', '___EOS___']", "index": 96 }, { "content": "def EVIOCGBIT(fileno, ev, buffer):\n return _IOR_len('E', 0x20 + ev)(fileno, buffer)", "metadata": "root.EVIOCGBIT", "header": "['module', '___EOS___']", "index": 110 }, { "content": "def EVIOCGABS(fileno, abs):\n buffer = input_absinfo()\n return _IOR_len('E', 0x40 + abs)(fileno, buffer)", "metadata": "root.EVIOCGABS", "header": "['module', '___EOS___']", "index": 112 }, { "content": "def get_set_bits(bytes):\n bits = set()\n j = 0\n for byte in bytes:\n for i in range(8):\n if byte & 1:\n bits.add(j + i)\n byte >>= 1\n j += 8\n return bits", "metadata": "root.get_set_bits", "header": "['module', '___EOS___']", "index": 116 }, { "content": "def _create_control(fileno, event_type, event_code):\n if event_type == EV_ABS:\n raw_name = _abs_raw_names.get(event_code, 'EV_ABS(%x)' % event_code)\n name = _abs_names.get(event_code)\n absinfo = EVIOCGABS(fileno, event_code)\n value = absinfo.value\n min = absinfo.minimum\n max = absinfo.maximum\n control = AbsoluteAxis(name, min, max, raw_name)\n control._set_value(value)\n\n if name == 'hat_y':\n control.inverted = True\n elif event_type == EV_REL:\n raw_name = _rel_raw_names.get(event_code, 'EV_REL(%x)' % event_code)\n name = _rel_names.get(event_code)\n # TODO min/max?\n control = RelativeAxis(name, raw_name)\n elif event_type == EV_KEY:\n raw_name = _key_raw_names.get(event_code, 'EV_KEY(%x)' % event_code)\n name = None\n control = Button(name, raw_name)\n else:\n value = min = max = 0 # TODO\n return None\n control._event_type = event_type\n control._event_code = event_code\n return control", "metadata": "root._create_control", "header": "['module', '___EOS___']", "index": 147 }, { "content": "def _create_joystick(device):\n # Look for something with an ABS X and ABS Y axis, and a joystick 0 button\n have_x = False\n have_y = False\n have_button = False\n for control in device.controls:\n if control._event_type == EV_ABS and control._event_code == ABS_X:\n have_x = True\n elif control._event_type == EV_ABS and control._event_code == ABS_Y:\n have_y = True\n elif control._event_type == EV_KEY and \\\n control._event_code == BTN_JOYSTICK:\n have_button = True\n if not (have_x and have_y and have_button):\n return\n\n return Joystick(device)", "metadata": "root._create_joystick", "header": "['module', '___EOS___']", "index": 176 }, { "content": "class EvdevDevice(XlibSelectDevice, Device):\n _fileno = None\n \n\n\n\n\n # XlibSelectDevice interface\n\n\n", "metadata": "root.EvdevDevice", "header": "['module', '___EOS___']", "index": 203 }, { "content": " def __init__(self, display, filename):\n self._filename = filename\n\n fileno = os.open(filename, os.O_RDONLY)\n #event_version = EVIOCGVERSION(fileno).value\n\n id = EVIOCGID(fileno)\n self.id_bustype = id.bustype\n self.id_vendor = hex(id.vendor)\n self.id_product = hex(id.product)\n self.id_version = id.version\n\n name = EVIOCGNAME(fileno)\n try:\n name = name.decode('utf-8')\n except UnicodeDecodeError:\n try:\n name = name.decode('latin-1')\n except UnicodeDecodeError:\n pass\n \n try:\n self.phys = EVIOCGPHYS(fileno)\n except OSError:\n self.phys = ''\n try:\n self.uniq = EVIOCGUNIQ(fileno)\n except OSError:\n self.uniq = ''\n\n self.controls = []\n self.control_map = {}\n\n event_types_bits = (ctypes.c_byte 4)()\n EVIOCGBIT(fileno, 0, event_types_bits)\n for event_type in get_set_bits(event_types_bits):\n if event_type not in event_types:\n continue\n max_code = event_types[event_type]\n nbytes = max_code // 8 + 1\n event_codes_bits = (ctypes.c_byte * nbytes)()\n EVIOCGBIT(fileno, event_type, event_codes_bits)\n for event_code in get_set_bits(event_codes_bits):\n control = _create_control(fileno, event_type, event_code)\n if control:\n self.control_map[(event_type, event_code)] = control \n self.controls.append(control)\n\n os.close(fileno)\n\n super(EvdevDevice, self).__init__(display, name)", "metadata": "root.EvdevDevice.__init__", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 206 }, { "content": " def open(self, window=None, exclusive=False):\n super(EvdevDevice, self).open(window, exclusive)\n\n try:\n self._fileno = os.open(self._filename, os.O_RDONLY \| os.O_NONBLOCK)\n except OSError, e:\n raise DeviceOpenException(e)\n\n pyglet.app.platform_event_loop._select_devices.add(self)", "metadata": "root.EvdevDevice.open", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 258 }, { "content": " def close(self):\n super(EvdevDevice, self).close()\n\n if not self._fileno:\n return\n\n pyglet.app.platform_event_loop._select_devices.remove(self)\n os.close(self._fileno)\n self._fileno = None", "metadata": "root.EvdevDevice.close", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 268 }, { "content": " def get_controls(self):\n return self.controls", "metadata": "root.EvdevDevice.get_controls", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 278 }, { "content": " def fileno(self):\n return self._fileno", "metadata": "root.EvdevDevice.fileno", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 283 }, { "content": " def poll(self):\n # TODO\n return False", "metadata": "root.EvdevDevice.poll", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 286 }, { "content": " def select(self):\n if not self._fileno:\n return\n\n events = (input_event * 64)()\n bytes = c.read(self._fileno, events, ctypes.sizeof(events))\n if bytes < 0:\n return\n\n n_events = bytes // ctypes.sizeof(input_event)\n for event in events[:n_events]:\n try:\n control = self.control_map[(event.type, event.code)]\n control._set_value(event.value)\n except KeyError:\n pass", "metadata": "root.EvdevDevice.select", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 290 }, { "content": "def get_devices(display=None):\n base = '/dev/input'\n for filename in os.listdir(base):\n if filename.startswith('event'):\n path = os.path.join(base, filename)\n if path in _devices:\n continue\n\n try:\n _devices[path] = EvdevDevice(display, path)\n except OSError:\n pass \n\n return _devices.values()", "metadata": "root.get_devices", "header": "['module', '___EOS___']", "index": 308 }, { "content": "def get_joysticks(display=None):\n return filter(None, [_create_joystick(d) for d in get_devices(display)])", "metadata": "root.get_joysticks", "header": "['module', '___EOS___']", "index": 323 } ]	[ { "span": "from 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First parameter of a method is not named 'self'	rcbops/glance-buildpackage/glance/tests/functional/test_cache_middleware.py	[ { "content": " def do_HEAD(s):\n \"\"\"\n Respond to an image HEAD request fake metadata\n \"\"\"\n if 'images' in s.path:\n s.send_response(200)\n s.send_header('Content-Type', 'application/octet-stream')\n s.send_header('Content-Length', FIVE_KB)\n s.end_headers()\n return\n else:\n self.send_error(404, 'File Not Found: %s' % self.path)\n return", "metadata": "root.RemoteImageHandler.do_HEAD", "header": "['class', 'RemoteImageHandler', '(', 'BaseHTTPServer', '.', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']", "index": 44 }, { "content": " def do_GET(s):\n \"\"\"\n Respond to an image GET request with fake image content.\n \"\"\"\n if 'images' in s.path:\n s.send_response(200)\n s.send_header('Content-Type', 'application/octet-stream')\n s.send_header('Content-Length', FIVE_KB)\n s.end_headers()\n image_data = '' FIVE_KB\n s.wfile.write(image_data)\n self.wfile.close()\n return\n else:\n self.send_error(404, 'File Not Found: %s' % self.path)\n return", "metadata": "root.RemoteImageHandler.do_GET", "header": "['class', 'RemoteImageHandler', '(', 'BaseHTTPServer', '.', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']", "index": 58 } ]	[ { "span": "def do_HEAD(s):", "start_line": 44, "start_column": 4, "end_line": 44, "end_column": 19 }, { "span": "def do_GET(s):", "start_line": 58, "start_column": 4, "end_line": 58, "end_column": 18 } ]	[]	1	true	[ "[CLS]_", "First_", "parameter_", "of_", "a_", "method_", "is_", "not_", "named_", "'", "self", "'_", "[SEP]_", "class_", "Remo", "te", "Image", "Handler_", "(_", "Base", "HTTP", "Server_", "._", "Base", "HTTP", "Request", "Handler_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "def_", "do", "\\u", "HEAD_", "(_", "s_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", 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Unused import	kleientertainment/ds_mod_tools/pkg/win32/mod_tools/exported/export.py	[ { "content": "import sys, os, argparse, glob\nimport xml.etree.ElementTree as ET\nimport ResizeInfo, ExportOptions\nfrom klei import util\nimport subprocess\n\nSCRIPT_DIR = os.path.dirname( __file__ )\n\nsys.path.append( SCRIPT_DIR )\n\n\n\n \n\n\nif __name__ == \"__main__\":\n CWD = os.getcwd()\n\n # Now do the export\n parser = argparse.ArgumentParser( description = \"Animation batch exporter script\" )\n parser.add_argument( '--platform', default='opengl' )\n parser.add_argument( '--textureformat', default='bc3' )\n parser.add_argument( '--hardalphatextureformat', default='bc1' )\n parser.add_argument( '--force', action='store_true' )\n parser.add_argument( '--square', action='store_true' )\n parser.add_argument( '--ignoreexceptions', action='store_true' )\n parser.add_argument( 'anims', type=str, nargs='?', help=\"List of anim filenames to be exported\" )\n parser.add_argument( '--outputdir', default='data' )\n parser.add_argument( '--prefabsdir', default='' )\n parser.add_argument( '--skip_update_prefabs', action='store_true' )\n args = parser.parse_args()\n\n if len( args.prefabsdir ) == 0:\n args.prefabsdir = os.path.join( SCRIPT_DIR, \"..\", args.outputdir )\n\n prefabs_file = os.path.abspath( os.path.normpath( os.path.join( CWD, args.prefabsdir, \"prefabs.xml\" ) ) )\n prefabs = Prefabs( prefabs_file )\n anims = []\n if args.anims:\n anims = [ args.anims ]\n else:\n anims = [ os.path.basename( anim.File ) for anim in prefabs.GetAssetType( \"anim\" ) ]\n\n # sorted, unique anims\n anims = sorted( set( anims ) )\n anims = [ ( anim, prefabs, args ) for anim in anims ]\n\n from multiprocessing import Pool\n pool = Pool(processes=1)\n pool.map( ConvertAnim, anims )\n\n # Ensure that the prefabs.xml file is up to date\n if not args.skip_update_prefabs:\n os.chdir( os.path.join( SCRIPT_DIR, \"..\" ) )\n os.system( ' '.join( ( 'updateprefabs.bat', args.outputdir ) ) )\n\n os.chdir( CWD )\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Asset:", "metadata": "root.Asset", "header": "['module', '___EOS___']", "index": 10 }, { "content": " def __init__( self, filename, asset_type ):\n self.File = filename\n self.Type = asset_type", "metadata": "root.Asset.__init__", "header": "['class', 'Asset', ':', '___EOS___']", "index": 11 }, { "content": "class Prefab:", "metadata": "root.Prefab", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def __init__( self, name, assets = [] ):\n self.Name = name\n self.Assets = assets", "metadata": "root.Prefab.__init__", "header": "['class', 'Prefab', ':', '___EOS___']", "index": 16 }, { "content": "class Prefabs:\n\n\n", "metadata": "root.Prefabs", "header": "['module', '___EOS___']", "index": 20 }, { "content": " def __init__( self, filename ):\n self.Prefabs = self.ParsePrefabs( filename )", "metadata": "root.Prefabs.__init__", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 21 }, { "content": " def GetAssetType( self, asset_type ):\n asset_type = asset_type.upper()\n assets = []\n \n for prefab in self.Prefabs:\n for asset in prefab.Assets:\n if asset.Type == asset_type:\n assets.append( asset )\n\n return assets", "metadata": "root.Prefabs.GetAssetType", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 24 }, { "content": " def ParsePrefabs( self, filename ):\n tree = ET.parse( filename )\n prefabs = tree.findall( \"Defs/Prefab\" )\n\n prefab_list = []\n for prefab in prefabs:\n name = prefab.attrib[ 'name' ]\n assets = [ Asset( asset.attrib[ 'file' ], asset.attrib[ 'type' ].upper() ) for asset in prefab.findall( \"Assets/Asset\" ) ]\n prefab_list.append( Prefab( name, assets ) )\n\n return prefab_list", "metadata": "root.Prefabs.ParsePrefabs", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 35 }, { "content": " def GetOwner( self, asset_filename ):\n for prefab in self.Prefabs:\n for asset in prefab.Assets:\n if os.path.basename( asset.File ) == asset_filename:\n return prefab\n return None", "metadata": "root.Prefabs.GetOwner", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 47 }, { "content": "def ConvertAnim(params):\n anim, prefabs, args = params\n anim_path = anim\n\n anim = os.path.basename(anim.strip())\n prefab_owner = prefabs.GetOwner( anim )\n scale = ResizeInfo.DefaultSize()\n if prefab_owner:\n scale = ResizeInfo.SizeMap[ prefab_owner.Name ]\n #print (prefab_owner.Name, scale)\n\n # Filename scaling overrides general prefab settings\n anim_filename = os.path.basename( anim )\n anim_name, ext = os.path.splitext( anim_filename )\n keys_to_try = [ anim, anim_filename, anim_name ]\n for key in keys_to_try:\n scale = ResizeInfo.SizeMap.get( key, scale )\n\n additional_options = ExportOptions.Options.get( anim_name, [] )\n cmd_args = [\n os.path.join( SCRIPT_DIR, r\"..\\buildtools\\windows\\python27\\python.exe\" ),\n os.path.join( SCRIPT_DIR, r\"..\\tools\\scripts\\buildanimation.py\" ),\n \"--scale=\" + str( scale )\n ]\n \n additional_args = ( 'platform', 'textureformat', 'hardalphatextureformat' )\n for arg in additional_args:\n try:\n val = getattr( args, arg )\n cmd_args.append( '--{}={}'.format( arg, val ) )\n except:\n pass\n\n additional_flags = ( 'force', 'square', 'ignoreexceptions' )\n for flag in additional_flags:\n try:\n val = getattr( args, flag )\n if val:\n cmd_args.append( '--' + flag )\n except:\n pass\n\n os.chdir( SCRIPT_DIR )\n\n src_file = anim_path \n anim_dir = os.path.normpath( os.path.join(\"..\", args.outputdir, \"anim\"))\n if not os.path.exists(anim_dir):\n os.makedirs(anim_dir)\n dest_file = os.path.join(anim_dir, anim)\n\n if args.force or util.IsFileNewer( src_file, dest_file ):\n cmd_args += additional_options\n cmd_args.append( src_file )\n cmd_args.append( '--outputdir=' + args.outputdir )\n\n print( '\\tExporting ' + anim )\n return subprocess.call(cmd_args)\n else:\n return 0", "metadata": "root.ConvertAnim", "header": "['module', '___EOS___']", "index": 55 } ]	[ { "span": "import sys, os, argparse, glob", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 30 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "import_", "sys_", ",_", "os_", ",_", "argparse_", ",_", "glob_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "xml_", "._", "etree_", "._", "Element", "Tree_", "as_", "ET_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "Resize", "Info_", ",_", "Export", "Options_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "kle", "i_", "import_", "util_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "subprocess_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "SCRIPT", "\\u", "DIR_", "=_", "os_", "._", "path_", "._", "dirname_", "(_", "\\u\\u", "file\\u\\u_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "sys_", "._", "path_", "._", "append_", "(_", "SCRIPT", "\\u", "DIR_", ")_", 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused local variable	anandology/pyjamas/pyjs/src/pyjs/linker.py	[ { "content": "def module_path(name, path):\n global _path_cache\n candidates = []\n packages = {}\n modules = {}\n if name.endswith('.js'):\n parts = [name]\n else:\n parts = name.split('.')\n if not name in _path_cache:\n _path_cache[name] = {}\n for p in path:\n if p in _path_cache[name]:\n if _path_cache[name][p] is None:\n continue\n return _path_cache[name][p]\n tail = []\n for pn in parts:\n tail.append(pn)\n mn = '.'.join(tail)\n cp = os.path.join(*([p] + tail))\n if mn in _path_cache:\n cache = _path_cache[mn]\n else:\n cache = {}\n _path_cache[mn] = cache\n if p in cache:\n if cache[p] is None:\n break\n elif os.path.isdir(cp) and os.path.exists(\n os.path.join(cp, '__init__.py')):\n cache[p] = os.path.join(cp, '__init__.py')\n elif os.path.exists(cp + '.py'):\n cache[p] = cp + '.py'\n elif pn.endswith('.js') and os.path.exists(cp):\n cache[p] = cp\n else:\n cache[p] = None\n if p in _path_cache[name] and not _path_cache[name][p] is None:\n return _path_cache[name][p]\n _path_cache[name][p] = None\n \n return None\n raise RuntimeError, \"Module %r not found\" % name", "metadata": "root.module_path", "header": "['module', '___EOS___']", "index": 158 } ]	[ { "span": "candidates ", "start_line": 160, "start_column": 4, "end_line": 160, "end_column": 14 }, { "span": "packages ", "start_line": 161, "start_column": 4, "end_line": 161, "end_column": 12 }, { "span": "modules ", "start_line": 162, "start_column": 4, "end_line": 162, "end_column": 11 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "module", "\\u", "path_", "(_", "name_", ",_", "path_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "global_", "\\u", "path", "\\u", "cache_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "candidates_", "=_", "[_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "packages_", "=_", "{_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "modules_", "=_", "{_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "name_", "._", "endswith_", "(_", "'.", "js", "'_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "parts_", "=_", "[_", "name_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "parts_", "=_", "name_", "._", "split_", "(_", "'.'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "not_", "name_", "in_", "\\u", "path", "\\u", "cache_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", "=_", "{_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "for_", "p_", "in_", "path_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "p_", "in_", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", "[_", "p_", "]_", "is_", "None_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "continue_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "return_", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", "[_", "p_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "tail_", "=_", "[_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "for_", "pn_", "in_", "parts_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "tail_", "._", "append_", "(_", "pn_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "mn_", "=_", "'.'_", "._", "join_", "(_", "tail_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "cp_", "=_", "os_", "._", "path_", "._", "join_", "(_", "*_", "(_", "[_", "p_", "]_", "+_", "tail_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "mn_", "in_", "\\u", "path", "\\u", "cache_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "cache_", "=_", "\\u", "path", "\\u", "cache_", "[_", "mn_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "cache_", "=_", "{_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u", "path", "\\u", "cache_", "[_", "mn_", "]_", "=_", "cache_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "p_", "in_", "cache_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "cache_", "[_", "p_", "]_", "is_", "None_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", "_", "break_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "os_", "._", "path_", "._", "isdir_", "(_", "cp_", ")_", "and_", "os_", "._", "path_", "._", "exists_", "(_", "\\u\\u\\uNL\\u\\u\\u_", "os_", "._", "path_", "._", "join_", "(_", "cp_", ",_", "'\\u", "\\u", "init", "\\u\\u", ".", "py", "'_", ")_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "cache_", "[_", "p_", "]_", "=_", "os_", "._", "path_", "._", "join_", "(_", "cp_", ",_", "'\\u", "\\u", "init", "\\u\\u", ".", "py", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "os_", "._", "path_", "._", "exists_", "(_", "cp_", "+_", "'.", "py", "'_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "cache_", "[_", "p_", "]_", "=_", "cp_", "+_", "'.", "py", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "pn_", "._", "endswith_", "(_", "'.", "js", "'_", ")_", "and_", "os_", "._", "path_", "._", "exists_", "(_", "cp_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "cache_", "[_", "p_", "]_", "=_", "cp_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "cache_", "[_", "p_", "]_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "p_", "in_", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", "and_", "not_", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", "[_", "p_", "]_", "is_", "None_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", "[_", "p_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u", "path", "\\u", "cache_", "[_", "name_", "]_", "[_", "p_", "]_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "return_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "raise_", "Run", "time", "Error_", ",_", "\"", "Modul", "e", " ", "%", "r", " ", "not", " ", "found", "\"_", "%_", "name_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 0, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	adobe/brackets-shell/gyp/pylib/gyp/generator/ninja_test.py	[ { "content": "#!/usr/bin/env python\n\n# Copyright (c) 2012 Google Inc. All rights reserved.\n# Use of this source code is governed by a BSD-style license that can be\n# found in the LICENSE file.\n\n\"\"\" Unit tests for the ninja.py file. \"\"\"\n\nimport gyp.generator.ninja as ninja\nimport unittest\nimport StringIO\nimport sys\nimport TestCommon\n\n\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestPrefixesAndSuffixes(unittest.TestCase):\n if sys.platform in ('win32', 'cygwin'):\n\n if sys.platform == 'linux2':", "metadata": "root.TestPrefixesAndSuffixes", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def test_BinaryNamesWindows(self):\n writer = ninja.NinjaWriter('foo', 'wee', '.', '.', 'ninja.build', 'win')\n spec = { 'target_name': 'wee' }\n self.assertTrue(writer.ComputeOutputFileName(spec, 'executable').\n endswith('.exe'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'shared_library').\n endswith('.dll'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'static_library').\n endswith('.lib'))", "metadata": "root.TestPrefixesAndSuffixes.test_BinaryNamesWindows", "header": "['class', 'TestPrefixesAndSuffixes', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 17 }, { "content": " def test_BinaryNamesLinux(self):\n writer = ninja.NinjaWriter('foo', 'wee', '.', '.', 'ninja.build', 'linux')\n spec = { 'target_name': 'wee' }\n self.assertTrue('.' not in writer.ComputeOutputFileName(spec,\n 'executable'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'shared_library').\n startswith('lib'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'static_library').\n startswith('lib'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'shared_library').\n endswith('.so'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'static_library').\n endswith('.a'))", "metadata": "root.TestPrefixesAndSuffixes.test_BinaryNamesLinux", "header": "['class', 'TestPrefixesAndSuffixes', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 28 } ]	[ { "span": "import StringIO", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 15 }, { "span": "import TestCommon", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 17 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#!", "/", "usr", "/", "bin", "/", "env", " ", "python_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Copy", "right", " ", "(", "c", ")", " ", "2012", " ", "Goo", "gle", " ", "Inc", ".", " ", "All", " ", "rights", " ", "reserve", "d", "._", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Us", "e", " ", "of", " ", "this", " ", "source", " ", "code", " ", "is", " ", "govern", "ed", " ", "by", " ", "a", " ", "BS", "D", "-", "style", " ", "license", " ", "tha", "t", " ", "can", " ", "be_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "found", " ", "in", " ", "the", " ", "LICENSE", " ", "file", "._", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\"\"\"", " ", "Unit", " ", "tests", " ", "for", " ", "the", " ", "ninja", ".", "py", " ", "file", ".", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "gyp", "_", "._", "generator_", "._", "ninja", "_", "as_", "ninja", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "unittest_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "String", "IO_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "sys_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "Test", "Common_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "\\u\\u", "name\\u\\u_", "==_", "'\\u", "\\u", "main", "\\u\\u'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "unittest_", "._", "main_", "(_", ")_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "class_", "Test", "Prefixe", "s", "And", "Su", "ffi", "xes_", "(_", "unittest_", "._", "Test", "Case_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "sys_", "._", "platform_", "in_", "(_", "'", "win32", "'_", ",_", "'", "cyg", "win", "'_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "sys_", "._", "platform_", "==_", "'", "linux", "2", "'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Test", "Prefixe", "s", "And", "Su", "ffi", "xes_", "(_", "unittest_", "._", "Test", "Case_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "def_", "test\\u", "Bin", "ary", "Names", "Windows_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "writer_", "=_", "ninja", "_", "._", "Nin", "ja", "Writer_", "(_", "'", "foo", "'_", ",_", "'", "wee", "'_", ",_", "'.'_", ",_", "'.'_", ",_", "'", "ninja", ".", "build", "'_", ",_", "'", "win", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "spec_", "=_", "{_", "'", "target", "\\u", "name", "'_", ":_", "'", "wee", "'_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "'", "executable", "'_", ")_", "._", "\\u\\u\\uNL\\u\\u\\u_", "endswith_", "(_", "'.", "exe", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "'", "shared", "\\u", "librar", "y", "'_", ")_", "._", "\\u\\u\\uNL\\u\\u\\u_", "endswith_", "(_", "'.", "dll", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "'", "static", "\\u", "librar", "y", "'_", ")_", "._", "\\u\\u\\uNL\\u\\u\\u_", "endswith_", "(_", "'.", "lib", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Test", "Prefixe", "s", "And", "Su", "ffi", "xes_", "(_", "unittest_", "._", "Test", "Case_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "def_", "test\\u", "Bin", "ary", "Names", "Lin", "ux_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "writer_", "=_", "ninja", "_", "._", "Nin", "ja", "Writer_", "(_", "'", "foo", "'_", ",_", "'", "wee", "'_", ",_", "'.'_", ",_", "'.'_", ",_", "'", "ninja", ".", "build", "'_", ",_", "'", "linux", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "spec_", "=_", "{_", "'", "target", "\\u", "name", "'_", ":_", "'", "wee", "'_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "'.'_", "not_", "in_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "executable", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "'", "shared", "\\u", "librar", "y", "'_", ")_", "._", "\\u\\u\\uNL\\u\\u\\u_", "startswith_", "(_", "'", "lib", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "'", "static", "\\u", "librar", "y", "'_", ")_", "._", "\\u\\u\\uNL\\u\\u\\u_", "startswith_", "(_", "'", "lib", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "'", "shared", "\\u", "librar", "y", "'_", ")_", "._", "\\u\\u\\uNL\\u\\u\\u_", "endswith_", "(_", "'.", "so", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "writer_", "._", "Compute", "Output", "File", "Name_", "(_", "spec_", ",_", "'", "static", "\\u", "librar", "y", "'_", ")_", "._", "\\u\\u\\uNL\\u\\u\\u_", "endswith_", "(_", "'.", "a", "'_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused local variable	mozilla/inventory/api_v2/reverse_dns_handler.py	[ { "content": " def read(self, request, reverse_dns_zone=None, reverse_dns_action=None):\n if reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones':\n tasks = []\n for task in ScheduledTask.objects.get_all_reverse_dns():\n tasks.append(task.task)\n #ScheduledTask.objects.delete_all_reverse_dns()\n return tasks\n elif reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones_with_names':\n truths = Truth.objects.select_related().filter(keyvalue__key='is_reverse_dns_zone',keyvalue__value='True')\n truth_list = []\n for t in truths:\n truth_list.append({'name':t.name.strip(),'description':t.description.strip()})\n return truth_list\n elif reverse_dns_zone and reverse_dns_action == 'view_hosts':\n scope_options = []\n client = Client()\n hosts = json.loads(client.get('/api/keyvalue/?key_type=system_by_zone&zone=%s' % reverse_dns_zone, follow=True).content)\n #print hosts\n adapter_list = []\n for host in hosts:\n if 'hostname' in host:\n the_url = '/api/keyvalue/?key_type=adapters_by_system_and_zone&reverse_dns_zone=%s&system=%s' % (reverse_dns_zone, host['hostname'])\n try:\n adapter_list.append(json.loads(client.get(the_url, follow=True).content))\n except:\n pass\n #d = DHCPInterface(scope_options, adapter_list)\n #return d.get_hosts()\n return None\n else:\n resp = rc.NOT_FOUND\n resp.write(\"I'm sorry but I don't understand your request\")", "metadata": "root.ReverseDNSHandler.read", "header": "['class', 'ReverseDNSHandler', '(', 'BaseHandler', ')', ':', '___EOS___']", "index": 17 } ]	[ { "span": "scope_options ", "start_line": 31, "start_column": 12, "end_line": 31, "end_column": 25 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "class_", "Revers", "e", "DNS", "Handler_", "(_", "Base", "Handler_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "read_", "(_", "self_", ",_", "request_", ",_", "reverse", "\\u", "dns", "\\u", "zone_", "=_", "None_", ",_", "reverse", "\\u", "dns", "\\u", "action_", "=_", "None_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "reverse", "\\u", "dns", "\\u", "zone_", "and_", "reverse", "\\u", "dns", "\\u", "action_", "==_", "'", "get", "\\u", "reverse", "\\u", "dns", "\\u", "zone", "s", "'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "tasks_", "=_", "[_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "for_", "task_", "in_", "Schedule", "d", "Task_", "._", "objects_", "._", "get", "\\u", "all", "\\u", "reverse", "\\u", "dns_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "tasks_", "._", "append_", "(_", "task_", "._", "task_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", "Schedule", "d", "Task", ".", "object", "s", ".", "delete", "\\u", "all", "\\u", "reverse", "\\u", "dns", "()", "_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "return_", "tasks_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "reverse", "\\u", "dns", "\\u", "zone_", "and_", "reverse", "\\u", "dns", "\\u", "action_", "==_", "'", "get", "\\u", "reverse", "\\u", "dns", "\\u", "zone", "s", "\\u", "with", "\\u", "names", "'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "truth", "s_", "=_", "Tru", "th_", "._", "objects_", "._", "select", "\\u", "related_", "(_", ")_", "._", "filter_", "(_", "keyval", "ue", "\\u\\u", "key_", "=_", "'", "is", "\\u", "reverse", "\\u", "dns", "\\u", "zone", "'_", ",_", "keyval", "ue", "\\u\\u", "value_", "=_", "'", "Tru", "e", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "truth", "\\u", "list_", "=_", "[_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "for_", "t_", "in_", "truth", "s_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "truth", "\\u", "list_", "._", "append_", "(_", "{_", "'", "name", "'_", ":_", "t_", "._", "name_", "._", "strip_", "(_", ")_", ",_", "'", "description", "'_", ":_", "t_", "._", "description_", "._", "strip_", "(_", ")_", "}_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "return_", "truth", "\\u", "list_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "reverse", "\\u", "dns", "\\u", "zone_", "and_", "reverse", "\\u", "dns", "\\u", "action_", "==_", "'", "view", "\\u", "host", "s", "'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "scope", "\\u", "options_", "=_", "[_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "client_", "=_", "Client_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "hosts_", "=_", "json_", "._", "loads_", "(_", "client_", "._", "get_", "(_", "'/", "api", "/", "keyval", "ue", "/?", "key", "\\u", "type", "=", "system", "\\u", "by", "\\u", "zone", "&", "zone", "=", "%", "s", "'_", "%_", "reverse", "\\u", "dns", "\\u", "zone_", ",_", "follow_", "=_", "True_", ")_", "._", "content_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", "print", " ", "hosts_", "\\u\\u\\uNL\\u\\u\\u_", "adapter", "\\u", "list_", "=_", "[_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "for_", "host_", "in_", "hosts_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "'", "host", "name", "'_", "in_", "host_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", "_", "the", "\\u", "url_", "=_", "'/", "api", "/", "keyval", "ue", "/?", "key", "\\u", "type", "=", "adapter", "s", "\\u", "by", "\\u", "system", "\\u", "and", "\\u", "zone", "&", "reverse", "\\u", "dns", "\\u", "zone", "=", "%", "s", "&", "system", "=", "%", "s", "'_", "%_", "(_", "reverse", "\\u", "dns", "\\u", "zone_", ",_", "host_", "[_", "'", "host", "name", "'_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", " _", "adapter", "\\u", "list_", "._", "append_", "(_", "json_", "._", "loads_", "(_", "client_", "._", "get_", "(_", "the", "\\u", "url_", ",_", "follow_", "=_", "True_", ")_", "._", "content_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", " _", "pass_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", "d", " ", "=", " ", "DHC", "PI", "nter", "face", "(", "scope", "\\u", "options", ",", " ", "adapter", "\\u", "list", ")_", "\\u\\u\\uNL\\u\\u\\u_", "#", "return", " ", "d", ".", "get", "\\u", "host", "s", "()", "_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "return_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "resp_", "=_", "rc_", "._", "NOT", "\\u", "FOUND_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "resp_", "._", "write_", "(_", "\"", "I", "'", "m", " ", "sorr", "y", " ", "but", " ", "I", " ", "don", "'", "t", " ", "underst", "and", " ", "your", " ", "request", "\"_", ")_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 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Unused import	kivy/python-for-android/pythonforandroid/recipes/zope_interface/__init__.py	[ { "content": "\nfrom pythonforandroid.toolchain import PythonRecipe, shprint, current_directory\nfrom os.path import join\nimport sh\n\n\n\nrecipe = ZopeInterfaceRecipe()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ZopeInterfaceRecipe(PythonRecipe):\n name = 'zope_interface'\n version = '4.1.2'\n url = 'https://pypi.python.org/packages/source/z/zope.interface/zope.interface-{version}.tar.gz'\n site_packages_name = 'zope.interface'\n\n depends = ['python2']\n", "metadata": "root.ZopeInterfaceRecipe", "header": "['module', '___EOS___']", "index": 6 }, { "content": " def build_arch(self, arch):\n super(ZopeInterfaceRecipe, self).build_arch(arch)\n print('Should remove zope tests etc. here, but skipping for now')", "metadata": "root.ZopeInterfaceRecipe.build_arch", "header": "['class', 'ZopeInterfaceRecipe', '(', 'PythonRecipe', ')', ':', '___EOS___']", "index": 14 } ]	[ { "span": "from pythonforandroid.toolchain import PythonRecipe, shprint, current_directory", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 79 }, { "span": "from os.path import join", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 24 }, { "span": "import sh", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 9 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "python", "fora", "ndr", "oid_", "._", "toolchain_", "import_", "Pyth", "on", "Recipe_", ",_", "shp", "rint_", ",_", "current", "\\u", "directory_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "os_", "._", "path_", "import_", "join_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "sh_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "recipe_", "=_", "Zo", "pe", "Interface", "Recipe_", "(_", ")_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "class_", "Zo", "pe", "Interface", "Recipe_", "(_", "Pyth", "on", "Recipe_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "name_", "=_", "'", "zop", "e\\u", "interface", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "version_", "=_", "'", "4.1", ".2", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "url_", "=_", "'", "https", "://", "pypi", ".", "python", ".", "org", "/", "package", "s", "/", "source", "/", "z", "/", "zop", "e", ".", "interface", "/", "zop", "e", ".", "interface", "-", "{", "version", "}.", "tar", ".", "gz", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "site", "\\u", "package", "s", "\\u", "name_", "=_", "'", "zop", "e", ".", "interface", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "depends_", "=_", "[_", "'", "python", "2", "'_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "[SEP]_", "class_", "Zo", "pe", "Interface", "Recipe_", "(_", "Pyth", "on", "Recipe_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "build", "\\u", "arch_", "(_", "self_", ",_", "arch_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "super_", "(_", "Zo", "pe", "Interface", "Recipe_", ",_", "self_", ")_", "._", "build", "\\u", "arch_", "(_", "arch_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "print_", "(_", "'", "Sho", "ul", "d", " ", "remove", " ", "zop", "e", " ", "tests", " ", "etc", ".", " ", "here", ",", " ", "but", " ", "skip", "ping", " ", "for", " ", "now", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused local variable	OrbitzWorldwide/droned/droned/lib/droned/responders/core.py	[ { "content": "@responder(pattern=\"^@(?P<command>.+)\", context_key='server', form=\"@<command>\", help=\"Run a droned command on the current server\")\[email protected]\ndef droneblast(conversation, command):\n server = conversation.context.get('server')\n response = None\n d = None\n try:\n if not isinstance(server, Server):\n conversation.say('On what <b>server</b>?')\n raise AssertionError('incomplete converation context')\n\n options = {}\n if 'timeout' in conversation.context:\n options['timeout'] = conversation.context['timeout']\n\n try:\n conversation.say(\"Running droned command...\")\n d = server.manager.run(command, **options)\n deferreds = conversation.context.get('deferreds', [])\n deferreds.append(d)\n conversation.context.update({'deferreds': deferreds})\n wfd = defer.waitForDeferred(d)\n yield wfd\n result = wfd.getResult()\n except:\n failure = Failure()\n if failure.check(DroneCommandFailed):\n rc = failure.value.resultContext\n conversation.say(rc.get('description') or str(rc), useHTML=False)\n else:\n conversation.say(failure.getTraceback(), useHTML=False)\n else:\n if isinstance(result, dict):\n output = result.values()[0].get('description', str(result))\n else:\n output = str(result)\n deferreds = conversation.context.get('deferreds', [])\n try: deferreds.remove(d)\n except: pass\n conversation.context.update({'deferreds': deferreds})\n conversation.say(\"Command completed\\n%s\" % output, useHTML=False)\n except AssertionError: pass\n except:\n result = Failure()\n yield result", "metadata": "root.droneblast", "header": "['module', '___EOS___']", "index": 73 } ]	[ { "span": "response ", "start_line": 77, "start_column": 4, "end_line": 77, "end_column": 12 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "@_", 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Testing equality to None	VisTrails/VisTrails/contrib/NumSciPy/ArrayPlot.py	[ { "content": " def get_label(self, ar, i):\n lab = ar.get_name(i)\n if lab == None:\n return 'Array ' + str(i)\n else:\n return lab", "metadata": "root.ArrayPlot.get_label", "header": "['class', 'ArrayPlot', '(', 'object', ')', ':', '___EOS___']", "index": 14 }, { "content": " def get_color(self, colors, i, randomcolor):\n if randomcolor:\n return (random.random(), random.random(), random.random())\n\n if self.color_dict == None:\n self.color_dict = {}\n for (k,r,g,b) in colors:\n self.color_dict[k] = (r,g,b)\n\n if self.color_dict.has_key(i):\n return self.color_dict[i]\n else:\n return None", "metadata": "root.ArrayPlot.get_color", "header": "['class', 'ArrayPlot', '(', 'object', ')', ':', '___EOS___']", "index": 24 }, { "content": " def get_marker(self, markers, i):\n if markers == None:\n return None\n\n if self.marker_dict == None:\n self.marker_dict = {}\n for (k,m) in markers:\n self.marker_dict[k] = m\n\n if self.marker_dict.has_key(i):\n return self.marker_dict[i]\n else:\n return None", "metadata": "root.ArrayPlot.get_marker", "header": "['class', 'ArrayPlot', '(', 'object', ')', ':', '___EOS___']", "index": 38 }, { "content": " def compute(self):\n data = self.get_input(\"Data Array\")\n da_ar = data.get_array().squeeze()\n if da_ar.ndim != 2:\n raise ModuleError(\"Input Data Array must have dimension = 2\")\n\n aspect_ratio = self.force_get_input(\"Aspect Ratio\")\n colormap = self.force_get_input(\"Colormap\")\n colorbar = self.force_get_input(\"Colorbar\")\n extents = self.force_get_input(\"Extents\")\n\n # Quickly check the assigned colormap to make sure it's valid\n if colormap == None:\n colormap = \"jet\"\n if not hasattr(pylab, colormap):\n colormap = \"jet\"\n \n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n \n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n\n s = 'from pylab import \\n' +\\\n 'from numpy import \\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n s += 'imshow(da_ar, interpolation=\\'bicubic\\''\n if aspect_ratio != None:\n s += ', aspect=' + str(aspect_ratio)\n\n if extents != None:\n s += ', extent=['+str(extents[0])+','+str(extents[1])+','+str(extents[2])+','+str(extents[3])+']'\n s += ')\\n'\n\n s += colormap + '()\\n'\n\n if colorbar:\n s += 'colorbar()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data.get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output('source', s)", "metadata": "root.ArrayImage.compute", "header": "['class', 'ArrayImage', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 65 }, { "content": " def compute(self):\n data = self.get_input_list(\"Data Array\")\n self.label_dict = None\n self.color_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n nbins = self.force_get_input(\"Bins\")\n if nbins == None:\n nbins = 10\n normed = self.force_get_input(\"Normalize\")\n if normed == None:\n normed = False\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n s = 'from pylab import \\n' +\\\n 'from numpy import \\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n data_list = []\n for i in data:\n data_list.append(i.get_array().squeeze())\n\n da_ar = None\n try:\n da_ar = numpy.array(data_list)\n except:\n raise ModuleException(\"Not all Data Array inputs are the same size!\")\n\n for i in range(da_ar.shape[0]):\n lab = self.get_label(data[i], i)\n col = self.get_color(colors, i, randomcolors)\n\n s += 'hist(da_ar['+str(i)+',:], bins=' + str(nbins)\n \n if lab != None:\n s += ', label=\\'' + lab + '\\''\n if col != None:\n s += ', facecolor=' + str(col)\n\n s += ', normed='+str(normed)\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data[0].get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'Histogram Value\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output(\"source\", s) ", "metadata": "root.Histogram.compute", "header": "['class', 'Histogram', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 162 }, { "content": " def compute(self):\n data = self.get_input_list(\"Data\")\n errs = self.force_get_input_list(\"Error Bars\")\n if len(errs) == 0:\n errs = None\n\n self.label_dict = None\n self.color_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n ticks = self.force_get_input_list(\"Bar Labels\")\n self.tick_dict = {}\n for (k,v) in ticks:\n self.tick_dict[k] = v\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n\n width = self.force_get_input(\"Bar Width\")\n if width == None:\n width = 0.5\n\n if errs != None:\n if len(data) != len(errs):\n raise ModuleError(\"Number of data does not match number of error bar data\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n s = 'from pylab import \\n' +\\\n 'from numpy import \\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n numpts = None\n ind = None\n prev = None\n ind = numpy.arange(data[0].get_array().flatten().shape[0])\n t = self.get_ticks(data[0].get_array().flatten().shape[0])\n ag_ar = numpy.zeros((len(data), data[0].get_array().flatten().shape[0]))\n for i in range(len(data)):\n da_ar = data[i].get_array().flatten()\n ag_ar[i,:] = da_ar\n\n er_ar = numpy.zeros((len(data), data[0].get_array().flatten().shape[0]))\n if errs != None:\n for i in range(len(data)):\n er_ar[i,:] = errs[i].get_array().flatten()\n \n for i in range(ag_ar.shape[0]):\n s += 'bar(ind, ag_ar[' + str(i) + ',:], width'\n lab = self.get_label(data[i], i)\n col = self.get_color(colors, i, randomcolors)\n if lab != None:\n s += ', label=\\'' + lab + '\\''\n if col != None:\n s += ', color=' + str(col)\n\n if errs != None:\n s += ', yerr=er_ar[' + str(i) + ',:]'\n\n if prev != None:\n s += ', bottom=ag_ar[' + str(i-1) + ',:]'\n\n s += ')\\n'\n prev = ag_ar[i]\n \n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data[0].get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data[0].get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n s += 'xticks(ind + width/2., t)\\n'\n exec s\n self.set_output(\"source\", s)", "metadata": "root.BarChart.compute", "header": "['class', 'BarChart', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 276 }, { "content": " def compute(self):\n xdata = self.get_input_list(\"X Array\")\n ydata = self.get_input_list(\"Y Array\")\n self.label_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n self.color_dict = None\n bg_color = self.force_get_input(\"Background\")\n markers = self.force_get_input_list(\"Markers\")\n self.marker_dict = None\n ps = self.force_get_input(\"Point Size\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n if len(xdata) != len(ydata):\n raise ModuleError(\"Cannot create scatter plot for different number of X and Y datasets.\")\n\n s = 'from pylab import \\n' +\\\n 'from numpy import \\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n xdata_ar = numpy.zeros((len(xdata), xdata[0].get_array().flatten().shape[0]))\n ydata_ar = numpy.zeros((len(xdata), xdata[0].get_array().flatten().shape[0]))\n\n for i in range(len(xdata)):\n xd = xdata[i]\n yd = ydata[i]\n xdata_ar[i,:] = xd.get_array().flatten()\n ydata_ar[i,:] = yd.get_array().flatten()\n \n for i in range(len(xdata)):\n xar = xdata[i]\n yar = ydata[i]\n\n lab = self.get_label(xar, i)\n col = self.get_color(colors, i, randomcolors)\n mar = self.get_marker(markers, i)\n\n s += 'scatter(xdata_ar[' + str(i) +',:], ydata_ar[' + str(i) + ',:]'\n \n if lab != None:\n s += ', label=\\'' + lab +'\\''\n if col != None:\n s += ', color=' + str(col)\n if mar != None:\n s += ', marker=\\'' + mar + '\\''\n if ps != None:\n s += ', size=' + str(ps)\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + xar.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + yar.get_domain_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n print s\n exec s\n self.set_output(\"source\", s)", "metadata": "root.ScatterPlot.compute", "header": "['class', 'ScatterPlot', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 404 }, { "content": " def compute(self):\n data = self.get_input(\"Input Array\")\n indexes = self.force_get_input(\"Indexes\")\n self.label_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n self.color_dict = None\n markers = self.force_get_input_list(\"Markers\")\n self.marker_dict = None\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n p_title = self.force_get_input(\"Title\")\n bg_color = self.force_get_input(\"Background\")\n\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n da_ar = data.get_array()\n\n if da_ar.ndim > 2:\n raise ModuleError(\"Cannot plot data with dimensions > 2\")\n \n s = 'from pylab import \\n' +\\\n 'from numpy import \\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n \n if da_ar.ndim == 1:\n da_ar.shape = (1, da_ar.shape[0])\n\n xar = self.force_get_input(\"X Values\")\n sf = self.force_get_input(\"Scaling Factor\")\n if sf == None:\n sf = 1.\n\n if xar == None:\n start_i = None\n end_i = None\n if indexes == None:\n start_i = 0\n end_i = da_ar.shape[1]\n else:\n start_i = indexes[0]\n end_i = indexes[1]\n\n xar = numpy.arange(start_i, end_i)\n xar = xar * sf\n else:\n xar = xar.get_array()\n \n print da_ar.shape\n print xar.shape\n for i in range(da_ar.shape[0]):\n lab = self.get_label(data, i)\n col = self.get_color(colors, i, randomcolors)\n mar = self.get_marker(markers, i)\n if indexes == None:\n s += 'plot(xar, da_ar[' + str(i) + ',:]'\n else:\n s += 'plot(xar, da_ar[' + str(i) + ',' + str(indexes[0]) + ':' + str(indexes[1]) + ']'\n \n if lab != None:\n s += ', label=\\'' + lab +'\\''\n if col != None:\n s += ', color=' + str(col)\n if mar != None:\n s += ', marker=\\'' + mar + '\\''\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data.get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output(\"source\", s)", "metadata": "root.LinePlot.compute", "header": "['class', 'LinePlot', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 518 } ]	[ { "span": "lab == None:", "start_line": 16, "start_column": 11, "end_line": 16, "end_column": 22 }, { "span": "self.color_dict == None:", "start_line": 28, "start_column": 11, "end_line": 28, "end_column": 34 }, { "span": "markers == None:", "start_line": 39, "start_column": 11, "end_line": 39, "end_column": 26 }, { "span": "self.marker_dict == None:", "start_line": 42, "start_column": 11, "end_line": 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Unused local variable	bottlepy/bottle/test/test_mount.py	[ { "content": " def test_mount_wsgi(self):\n status = {}\n def app(environ, start_response):\n start_response('200 OK', [('X-Test', 'WSGI')])\n return 'WSGI ' + environ['PATH_INFO']\n self.app.mount('/test', app)\n self.assertStatus(200, '/test/')\n self.assertBody('WSGI /', '/test')\n self.assertBody('WSGI /', '/test/')\n self.assertHeader('X-Test', 'WSGI', '/test/')\n self.assertBody('WSGI /test/bar', '/test/test/bar')", "metadata": "root.TestAppMounting.test_mount_wsgi", "header": "['class', 'TestAppMounting', '(', 'ServerTestBase', ')', ':', '___EOS___']", "index": 61 }, { "content": " def test_mount_wsgi_ctype_bug(self):\n status = {}\n def app(environ, start_response):\n start_response('200 OK', [('Content-Type', 'test/test')])\n return 'WSGI ' + environ['PATH_INFO']\n self.app.mount('/test', app)\n self.assertHeader('Content-Type', 'test/test', '/test/')", "metadata": "root.TestAppMounting.test_mount_wsgi_ctype_bug", "header": "['class', 'TestAppMounting', '(', 'ServerTestBase', ')', ':', '___EOS___']", "index": 82 } ]	[ { "span": "status ", "start_line": 62, "start_column": 8, "end_line": 62, "end_column": 14 }, { "span": "status ", "start_line": 83, "start_column": 8, "end_line": 83, "end_column": 14 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "class_", "Test", "App", "Mount", "ing_", "(_", "Server", "Test", "Base_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "mount", "\\u", "wsgi_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "status_", "=_", "{_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "def_", "app_", "(_", "environ_", ",_", "start", "\\u", "response_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "start", "\\u", "response_", "(_", "'", "200", " ", "OK", "'_", ",_", "[_", "(_", "'", "X", "-", "Test", "'_", ",_", "'", "WS", 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Unused local variable	xumiao/pymonk/examples/exper.py	[ { "content": "def readModel(filename):\n userFactors = None\n itemFactors = None\n with open(filename) as f:\n modelname = readline(f)\n version = readline(f)\n globalbias = float(readline(f))\n minRate = int(readline(f))\n maxRate = int(readline(f))\n userBias = readVector(f)\n userFactors = readMatrix(f)\n itemBias = readVector(f)\n itemFactors = readMatrix(f)\n return userFactors, itemFactors", "metadata": "root.readModel", "header": "['module', '___EOS___']", "index": 36 } ]	[ { "span": "modelname ", "start_line": 40, "start_column": 8, "end_line": 40, "end_column": 17 }, { "span": "version ", "start_line": 41, "start_column": 8, "end_line": 41, "end_column": 15 }, { "span": "globalbias ", "start_line": 42, "start_column": 8, "end_line": 42, "end_column": 18 }, { "span": "minRate ", "start_line": 43, "start_column": 8, "end_line": 43, "end_column": 15 }, { "span": "maxRate ", "start_line": 44, "start_column": 8, "end_line": 44, "end_column": 15 }, { "span": "userBias ", "start_line": 45, "start_column": 8, "end_line": 45, "end_column": 16 }, { "span": "itemBias ", "start_line": 47, "start_column": 8, "end_line": 47, "end_column": 16 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "read", "Model_", "(_", "filename_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "user", "Factor", "s_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "item", "Factor", "s_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "with_", "open_", "(_", "filename_", ")_", "as_", "f_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "model", "name_", "=_", "readline_", "(_", "f_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "version_", "=_", "readline_", "(_", "f_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "global", "bias_", "=_", "float_", "(_", "readline_", "(_", "f_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "min", "Rate_", "=_", "int_", "(_", "readline_", "(_", "f_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "max", "Rate_", "=_", "int_", "(_", "readline_", "(_", "f_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "user", "Bia", "s_", "=_", "read", "Vector_", "(_", "f_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "user", "Factor", "s_", "=_", "read", "Matrix_", "(_", "f_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "item", "Bia", "s_", "=_", "read", "Vector_", "(_", "f_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "item", "Factor", "s_", "=_", "read", "Matrix_", "(_", "f_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "return_", "user", "Factor", "s_", ",_", "item", "Factor", "s_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Variable defined multiple times	XiaoMi/minos/owl/collector/management/commands/metrics_updater.py	[ { "content": "def analyze_hbase_master_metrics(metric_task, metrics):\n cluster = metric_task.job.cluster\n hbase_cluster_record, created = HBaseCluster.objects.get_or_create(cluster=cluster)\n reset_aggregated_metrics(hbase_cluster_record)\n tables = {}\n region_record_need_save = []\n for bean in metrics['beans']:\n try:\n if 'RegionServers' not in bean:\n continue\n for rs_metrics in bean['RegionServers']:\n rs_name = rs_metrics['key']\n [rs_hostname, rs_port] = get_host_and_port_from_region_server_name(rs_name)\n rs_task = dbutil.get_task_by_host_and_port(rs_hostname, rs_port)\n rs_record, created = RegionServer.objects.get_or_create(cluster = cluster,\n task = rs_task)\n # region server name includes startTime, which means the same region server\n # will lead different RegionServer records if the region server restarts.\n # Therefore, we won't create region server by its name.\n rs_record.name = rs_name\n\n rs_value = rs_metrics['value']\n rs_record.last_attempt_time = metric_task.last_attempt_time\n rs_record.load = int(rs_value['load'])\n rs_record.numberOfRegions = int(rs_value['numberOfRegions'])\n reset_aggregated_metrics(rs_record)\n\n # we read out all regions belong to this region server and build a map\n all_regions_in_rs = Region.objects.filter(region_server = rs_record)\n all_regions_in_rs = dbutil.get_alive_regions_by_rs(rs_record)\n all_regions_map = {}\n logger.info(\"%r Finish get region: %d\", metric_task, len(all_regions_in_rs))\n for region in all_regions_in_rs:\n all_regions_map[region.name] = region\n\n regionsLoad = rs_value['regionsLoad']\n for region_metrics in regionsLoad:\n region_value = region_metrics['value']\n region_name = region_value['nameAsString']\n try:\n table_name = region_name.split(',')[0]\n except Exception as e:\n logger.warning(\"%r failed to get region name: %r, %s\",\n metric_task, e, region_name)\n continue\n\n region_metrics = {}\n\n if table_name not in tables:\n table_record, created = Table.objects.get_or_create(cluster = cluster,\n name = table_name)\n reset_aggregated_metrics(table_record)\n tables[table_name] = table_record\n\n table_record = tables[table_name]\n\n region_record = None\n if region_name in all_regions_map:\n region_record = all_regions_map[region_name]\n else:\n # if region record not in buffer, we get_or_create from db\n begin = datetime.datetime.now()\n region_record, created = Region.objects.get_or_create(table = table_record,\n name = region_name, encodeName = Region.get_encode_name(region_name),\n defaults={\"region_server\":rs_record})\n logger.info(\"%r get_or_create region in region_server from mysql, \" \\\n \"consume=%s, region_name=%s, buffered_rs=%s, get_rs=%s\",\n metric_task, str((datetime.datetime.now() - begin).total_seconds()),\n region_name, rs_record.name, region_record.region_server.name)\n\n\n logger.info(\"%r Finish analyze regionsLoad\", metric_task)\n\n region_record.region_server = rs_record\n region_record.analyze_region_record(region_value,\n metric_task.last_attempt_time)\n # we buffer the regions needed update for batch update\n region_record_need_save.append(region_record)\n aggregate_metrics(region_record, rs_record)\n aggregate_metrics(region_record, table_record)\n aggregate_metrics(region_record, hbase_cluster_record)\n\n rs_record.save()\n\n for table_record in tables.itervalues():\n table_record.last_attempt_time = metric_task.last_attempt_time\n table_record.availability = dbutil.getTableAvailability(\n table_record.cluster.name, table_record.name)\n table_record.save()\n\n hbase_cluster_record.save()\n\n # do batch update\n begin = datetime.datetime.now()\n dbutil.update_regions_for_master_metrics(region_record_need_save)\n logger.info(\"%r batch save region record for master, \" \\\n \"saved regions=%d, consume=%s\",\n metric_task, len(region_record_need_save),\n str((datetime.datetime.now() - begin).total_seconds()))\n except Exception as e:\n traceback.print_exc()\n logger.warning(\"%r failed to analyze metrics: %r\", metric_task, e)\n continue", "metadata": "root.analyze_hbase_master_metrics", "header": "['module', '___EOS___']", "index": 126 } ]	[ { "span": "all_regions_in_rs ", "start_line": 154, "start_column": 8, "end_line": 154, "end_column": 25 } ]	[ { "span": "all_regions_in_rs ", "start_line": 155, "start_column": 8, "end_line": 155, "end_column": 25 } ]	1	true	[ "[CLS]_", "Variable_", "defined_", "multiple_", "times_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "analyze", "\\u", "hbase", "\\u", "master", "\\u", "metrics_", "(_", "metric", "\\u", "task_", ",_", "metrics_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "cluster_", "=_", "metric", "\\u", "task_", "._", "job_", "._", "cluster_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "hbase", "\\u", "cluster", "\\u", "record_", 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Unused import	cloudera/hue/desktop/core/ext-py/Django-1.6.10/django/db/utils.py	[ { "content": "from functools import wraps\nimport os\nimport pkgutil\nfrom threading import local\nimport warnings\n\nfrom django.conf import settings\nfrom django.core.exceptions import ImproperlyConfigured\nfrom django.utils.functional import cached_property\nfrom django.utils.importlib import import_module\nfrom django.utils.module_loading import import_by_path\nfrom django.utils._os import upath\nfrom django.utils import six\n\n\nDEFAULT_DB_ALIAS = 'default'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Error(Exception if six.PY3 else StandardError):\n pass", "metadata": "root.Error", "header": "['module', '___EOS___']", "index": 18 }, { "content": "class InterfaceError(Error):\n pass", "metadata": "root.InterfaceError", "header": "['module', '___EOS___']", "index": 22 }, { "content": "class DatabaseError(Error):\n pass", "metadata": "root.DatabaseError", "header": "['module', '___EOS___']", "index": 26 }, { "content": "class DataError(DatabaseError):\n pass", "metadata": "root.DataError", "header": "['module', '___EOS___']", "index": 30 }, { "content": "class OperationalError(DatabaseError):\n pass", "metadata": "root.OperationalError", "header": "['module', '___EOS___']", "index": 34 }, { "content": "class IntegrityError(DatabaseError):\n pass", "metadata": "root.IntegrityError", "header": "['module', '___EOS___']", "index": 38 }, { "content": "class InternalError(DatabaseError):\n pass", "metadata": "root.InternalError", "header": "['module', '___EOS___']", "index": 42 }, { "content": "class ProgrammingError(DatabaseError):\n pass", "metadata": "root.ProgrammingError", "header": "['module', '___EOS___']", "index": 46 }, { "content": "class NotSupportedError(DatabaseError):\n pass", "metadata": "root.NotSupportedError", "header": "['module', '___EOS___']", "index": 50 }, { "content": "class DatabaseErrorWrapper(object):\n \"\"\"\n Context manager and decorator that re-throws backend-specific database\n exceptions using Django's common wrappers.\n \"\"\"\n\n\n\n", "metadata": "root.DatabaseErrorWrapper", "header": "['module', '___EOS___']", "index": 54 }, { "content": " def __init__(self, wrapper):\n \"\"\"\n wrapper is a database wrapper.\n\n It must have a Database attribute defining PEP-249 exceptions.\n \"\"\"\n self.wrapper = wrapper", "metadata": "root.DatabaseErrorWrapper.__init__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 60 }, { "content": " def __enter__(self):\n pass", "metadata": "root.DatabaseErrorWrapper.__enter__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 68 }, { "content": " def __exit__(self, exc_type, exc_value, traceback):\n if exc_type is None:\n return\n for dj_exc_type in (\n DataError,\n OperationalError,\n IntegrityError,\n InternalError,\n ProgrammingError,\n NotSupportedError,\n DatabaseError,\n InterfaceError,\n Error,\n ):\n db_exc_type = getattr(self.wrapper.Database, dj_exc_type.__name__)\n if issubclass(exc_type, db_exc_type):\n # Under Python 2.6, exc_value can still be a string.\n try:\n args = tuple(exc_value.args)\n except AttributeError:\n args = (exc_value,)\n dj_exc_value = dj_exc_type(args)\n dj_exc_value.__cause__ = exc_value\n # Only set the 'errors_occurred' flag for errors that may make\n # the connection unusable.\n if dj_exc_type not in (DataError, IntegrityError):\n self.wrapper.errors_occurred = True\n six.reraise(dj_exc_type, dj_exc_value, traceback)", "metadata": "root.DatabaseErrorWrapper.__exit__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 71 }, { "content": " def __call__(self, func):\n # Note that we are intentionally not using @wraps here for performance\n # reasons. Refs #21109.\n def inner(args, *kwargs):\n with self:\n return func(args, kwargs)\n return inner", "metadata": "root.DatabaseErrorWrapper.__call__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 100 }, { "content": "def load_backend(backend_name):\n # Look for a fully qualified database backend name\n try:\n return import_module('%s.base' % backend_name)\n except ImportError as e_user:\n # The database backend wasn't found. Display a helpful error message\n # listing all possible (built-in) database backends.\n backend_dir = os.path.join(os.path.dirname(upath(__file__)), 'backends')\n try:\n builtin_backends = [\n name for _, name, ispkg in pkgutil.iter_modules([backend_dir])\n if ispkg and name != 'dummy']\n except EnvironmentError:\n builtin_backends = []\n if backend_name not in ['django.db.backends.%s' % b for b in\n builtin_backends]:\n backend_reprs = map(repr, sorted(builtin_backends))\n error_msg = (\"%r isn't an available database backend.\\n\"\n \"Try using 'django.db.backends.XXX', where XXX \"\n \"is one of:\\n %s\\nError was: %s\" %\n (backend_name, \", \".join(backend_reprs), e_user))\n raise ImproperlyConfigured(error_msg)\n else:\n # If there's some other error, this must be an error in Django\n raise", "metadata": "root.load_backend", "header": "['module', '___EOS___']", "index": 109 }, { "content": "class ConnectionDoesNotExist(Exception):\n pass", "metadata": "root.ConnectionDoesNotExist", "header": "['module', '___EOS___']", "index": 136 }, { "content": "class ConnectionHandler(object):\n\n\n\n\n\n\n", "metadata": "root.ConnectionHandler", "header": "['module', '___EOS___']", "index": 140 }, { "content": " def __init__(self, databases=None):\n \"\"\"\n databases is an optional dictionary of database definitions (structured\n like settings.DATABASES).\n \"\"\"\n self._databases = databases\n self._connections = local()", "metadata": "root.ConnectionHandler.__init__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 141 }, { "content": " @cached_property\n def databases(self):\n if self._databases is None:\n self._databases = settings.DATABASES\n if self._databases == {}:\n self._databases = {\n DEFAULT_DB_ALIAS: {\n 'ENGINE': 'django.db.backends.dummy',\n },\n }\n if DEFAULT_DB_ALIAS not in self._databases:\n raise ImproperlyConfigured(\"You must define a '%s' database\" % DEFAULT_DB_ALIAS)\n return self._databases", "metadata": "root.ConnectionHandler.databases", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 149 }, { "content": " def ensure_defaults(self, alias):\n \"\"\"\n Puts the defaults into the settings dictionary for a given connection\n where no settings is provided.\n \"\"\"\n try:\n conn = self.databases[alias]\n except KeyError:\n raise ConnectionDoesNotExist(\"The connection %s doesn't exist\" % alias)\n\n conn.setdefault('ATOMIC_REQUESTS', False)\n if settings.TRANSACTIONS_MANAGED:\n warnings.warn(\n \"TRANSACTIONS_MANAGED is deprecated. Use AUTOCOMMIT instead.\",\n PendingDeprecationWarning, stacklevel=2)\n conn.setdefault('AUTOCOMMIT', False)\n conn.setdefault('AUTOCOMMIT', True)\n conn.setdefault('ENGINE', 'django.db.backends.dummy')\n if conn['ENGINE'] == 'django.db.backends.' or not conn['ENGINE']:\n conn['ENGINE'] = 'django.db.backends.dummy'\n conn.setdefault('CONN_MAX_AGE', 0)\n conn.setdefault('OPTIONS', {})\n conn.setdefault('TIME_ZONE', 'UTC' if settings.USE_TZ else settings.TIME_ZONE)\n for setting in ['NAME', 'USER', 'PASSWORD', 'HOST', 'PORT']:\n conn.setdefault(setting, '')\n for setting in ['TEST_CHARSET', 'TEST_COLLATION', 'TEST_NAME', 'TEST_MIRROR']:\n conn.setdefault(setting, None)", "metadata": "root.ConnectionHandler.ensure_defaults", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 163 }, { "content": " def __getitem__(self, alias):\n if hasattr(self._connections, alias):\n return getattr(self._connections, alias)\n\n self.ensure_defaults(alias)\n db = self.databases[alias]\n backend = load_backend(db['ENGINE'])\n conn = backend.DatabaseWrapper(db, alias)\n setattr(self._connections, alias, conn)\n return conn", "metadata": "root.ConnectionHandler.__getitem__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 191 }, { "content": " def __setitem__(self, key, value):\n setattr(self._connections, key, value)", "metadata": "root.ConnectionHandler.__setitem__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 202 }, { "content": " def __delitem__(self, key):\n delattr(self._connections, key)", "metadata": "root.ConnectionHandler.__delitem__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 205 }, { "content": " def __iter__(self):\n return iter(self.databases)", "metadata": "root.ConnectionHandler.__iter__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 208 }, { "content": " def all(self):\n return [self[alias] for alias in self]", "metadata": "root.ConnectionHandler.all", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 211 }, { "content": "class ConnectionRouter(object):\n\n\n\n db_for_read = _router_func('db_for_read')\n db_for_write = _router_func('db_for_write')\n\n", "metadata": "root.ConnectionRouter", "header": "['module', '___EOS___']", "index": 215 }, { "content": " def __init__(self, routers=None):\n \"\"\"\n If routers is not specified, will default to settings.DATABASE_ROUTERS.\n \"\"\"\n self._routers = routers", "metadata": "root.ConnectionRouter.__init__", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 216 }, { "content": " @cached_property\n def routers(self):\n if self._routers is None:\n self._routers = settings.DATABASE_ROUTERS\n routers = []\n for r in self._routers:\n if isinstance(r, six.string_types):\n router = import_by_path(r)()\n else:\n router = r\n routers.append(router)\n return routers", "metadata": "root.ConnectionRouter.routers", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 222 }, { "content": " def _router_func(action):\n def _route_db(self, model, hints):\n chosen_db = None\n for router in self.routers:\n try:\n method = getattr(router, action)\n except AttributeError:\n # If the router doesn't have a method, skip to the next one.\n pass\n else:\n chosen_db = method(model, hints)\n if chosen_db:\n return chosen_db\n try:\n return hints['instance']._state.db or DEFAULT_DB_ALIAS\n except KeyError:\n return DEFAULT_DB_ALIAS\n return _route_db", "metadata": "root.ConnectionRouter._router_func", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 235 }, { "content": " def allow_relation(self, obj1, obj2, hints):\n for router in self.routers:\n try:\n method = router.allow_relation\n except AttributeError:\n # If the router doesn't have a method, skip to the next one.\n pass\n else:\n allow = method(obj1, obj2, **hints)\n if allow is not None:\n return allow\n return obj1._state.db == obj2._state.db", "metadata": "root.ConnectionRouter.allow_relation", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 257 }, { "content": " def allow_syncdb(self, db, model):\n for router in self.routers:\n try:\n method = router.allow_syncdb\n except AttributeError:\n # If the router doesn't have a method, skip to the next one.\n pass\n else:\n allow = method(db, model)\n if allow is not None:\n return allow\n return True", "metadata": "root.ConnectionRouter.allow_syncdb", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 270 } ]	[ { "span": "from functools import wraps", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 27 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", 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Unused import	enthought/mayavi/mayavi/mlab.py	[ { "content": "\"\"\"\nmlab: a simple scripting interface to Mayavi2 for 3D plotting.\n\nCan be used inside Mayavi2 itself, in \"ipython --gui=qt\", or in any\napplication with a compatible UI (Qt or wxPython).\n\"\"\"\n\n# Author: Prabhu Ramachandran <[email protected]>\n# Gael Varoquaux <gael dot varoquaux at normalesup dot org>\n# Copyright (c) 2007-2016, Enthought, Inc.\n# License: BSD Style.\n\n\n# Try forcing the use of wx 2.8 before any other import.\nimport sys\nif not 'wx' in sys.modules:\n try:\n from traits.etsconfig.api import ETSConfig\n if ETSConfig.toolkit in ('wx', ''):\n import wxversion\n wxversion.ensureMinimal('2.8')\n except ImportError:\n \"\"\" wxversion not installed \"\"\"\n\n\n# Mayavi imports\nfrom mayavi.tools.camera import view, roll, yaw, pitch, move\nfrom mayavi.tools.figure import figure, clf, gcf, savefig, \\\n draw, sync_camera, close, screenshot\nfrom mayavi.tools.engine_manager import get_engine, show_pipeline, \\\n options, set_engine\nfrom mayavi.tools.show import show\nfrom mayavi.tools.animator import animate\n\n\nfrom .tools.helper_functions import contour3d, test_contour3d, \\\n quiver3d, test_quiver3d, test_quiver3d_2d_data, \\\n points3d, test_points3d, test_molecule, \\\n flow, test_flow, \\\n imshow, test_imshow, \\\n surf, test_surf, mesh, test_mesh, test_simple_surf, \\\n test_mesh_sphere, test_fancy_mesh,\\\n contour_surf, test_contour_surf, \\\n plot3d, test_plot3d, \\\n test_plot3d_anim, test_points3d_anim, test_contour3d_anim,\\\n test_simple_surf_anim, test_flow_anim, test_mesh_sphere_anim, \\\n triangular_mesh, test_triangular_mesh, barchart, \\\n test_barchart, test_mesh_mask_custom_colors\n\n\nfrom .tools.decorations import colorbar, scalarbar, vectorbar, \\\n outline, axes, xlabel, ylabel, zlabel, text, title, \\\n orientation_axes, text3d\n\nfrom .tools import pipeline\n\nfrom .tools.tools import start_recording, stop_recording\n\nif __name__ == \"__main__\":\n import numpy\n\n n_mer, n_long = 6, 11\n pi = numpy.pi\n dphi = pi/1000.0\n phi = numpy.arange(0.0, 2pi + 0.5dphi, dphi, 'd')\n mu = phin_mer\n x = numpy.cos(mu)(1+numpy.cos(n_longmu/n_mer)0.5)\n y = numpy.sin(mu)(1+numpy.cos(n_longmu/n_mer)0.5)\n z = numpy.sin(n_longmu/n_mer)0.5\n\n pl = plot3d(x, y, z, numpy.sin(mu), tube_radius=0.05, colormap='Spectral')\n\n colorbar(orientation='vertical')\n\n t = numpy.linspace(0, 4numpy.pi, 100)\n cos = numpy.cos\n sin = numpy.sin\n\n x = sin(2t)\n y = cos(t)\n z = sin(2t)\n s = sin(t)\n\n pts = points3d(x, y, z, s, colormap=\"YlGnBu\", scale_factor=0.1,\n extent=(-0.3,0.3, -0.3, 0.3, -0.2,0.2))\n\n axes(xlabel='X', ylabel='Y', zlabel='Z')\n outline(pl)\n\n title('Mayavi rocks', height=0.85)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def show_engine():\n \"\"\" This function is deprecated, please use show_pipeline.\n \"\"\"\n import warnings\n warnings.warn('The show_engine function is deprecated, please use'\n 'show_pipeline', stacklevel=2)\n return show_pipeline()", "metadata": "root.show_engine", "header": "['module', '___EOS___']", "index": 34 } ]	[ { "span": "from mayavi.tools.camera import view, roll, yaw, pitch, move", "start_line": 26, "start_column": 0, "end_line": 26, "end_column": 60 }, { "span": "from mayavi.tools.figure import figure, clf, gcf, savefig, \\\n draw, sync_camera, close, screenshot", "start_line": 27, "start_column": 0, "end_line": 28, "end_column": 40 }, { "span": "from mayavi.tools.engine_manager import get_engine, show_pipeline, \\\n options, set_engine", "start_line": 29, "start_column": 0, "end_line": 30, "end_column": 27 }, { "span": "from mayavi.tools.show import show", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 34 }, { "span": "from mayavi.tools.animator import animate", "start_line": 32, "start_column": 0, "end_line": 32, "end_column": 41 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", 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Module is imported with 'import' and 'import from'	lorien/grab/grab/spider/base.py	[ { "content": "from __future__ import absolute_import\nimport types\nimport logging\nimport time\ntry:\n from urlparse import urljoin\nexcept ImportError:\n from urllib.parse import urljoin\nfrom random import randint\nfrom six.moves import queue\nfrom copy import deepcopy\nimport six\nimport os\nfrom weblib import metric\nfrom contextlib import contextmanager\nfrom traceback import format_exc\nimport multiprocessing\nimport threading\nfrom datetime import datetime\nimport threading\nfrom threading import Thread\nfrom collections import deque\n\nfrom grab.base import Grab\nfrom grab.error import GrabInvalidUrl\nfrom grab.spider.error import (SpiderError, SpiderMisuseError, FatalError,\n NoTaskHandler, NoDataHandler,\n SpiderConfigurationError)\nfrom grab.spider.task import Task\nfrom grab.spider.data import Data\nfrom grab.spider.transport.multicurl import MulticurlTransport\nfrom grab.proxylist import ProxyList, BaseProxySource\nfrom grab.util.misc import camel_case_to_underscore\nfrom weblib.encoding import make_str, make_unicode\nfrom grab.base import GLOBAL_STATE\nfrom grab.stat import Stat, Timer\nfrom grab.spider.parser_pipeline import ParserPipeline\nfrom grab.spider.cache_pipeline import CachePipeline\nfrom grab.spider.deprecated import DeprecatedThingsSpiderMixin\nfrom grab.util.warning import warn\n\nDEFAULT_TASK_PRIORITY = 100\nDEFAULT_NETWORK_STREAM_NUMBER = 3\nDEFAULT_TASK_TRY_LIMIT = 5\nDEFAULT_NETWORK_TRY_LIMIT = 5\nRANDOM_TASK_PRIORITY_RANGE = (50, 100)\nNULL = object()\n\nlogger = logging.getLogger('grab.spider.base')\nlogger_verbose = logging.getLogger('grab.spider.base.verbose')\n# If you need verbose logging just\n# change logging level of that logger\nlogger_verbose.setLevel(logging.FATAL)\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "import multiprocessing", "start_line": 16, "start_column": 0, "end_line": 16, 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 0, 1, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Non-standard exception raised in special method	scikit-learn/scikit-learn/sklearn/externals/funcsigs.py	[ { "content": " def __hash__(self):\n msg = \"unhashable type: '{0}'\".format(self.__class__.__name__)\n raise TypeError(msg)", "metadata": "root.Parameter.__hash__", "header": "['class', 'Parameter', '(', 'object', ')', ':', '___EOS___']", "index": 331 }, { "content": " def __hash__(self):\n msg = \"unhashable type: '{0}'\".format(self.__class__.__name__)\n raise TypeError(msg)", "metadata": "root.BoundArguments.__hash__", "header": "['class', 'BoundArguments', '(', 'object', ')', ':', '___EOS___']", "index": 430 }, { "content": " def __hash__(self):\n msg = \"unhashable type: '{0}'\".format(self.__class__.__name__)\n raise TypeError(msg)", "metadata": "root.Signature.__hash__", "header": "['class', 'Signature', '(', 'object', ')', ':', '___EOS___']", "index": 610 } ]	[ { "span": "def __hash__(self):", "start_line": 331, "start_column": 4, "end_line": 331, "end_column": 23 }, { "span": "def __hash__(self):", "start_line": 430, "start_column": 4, "end_line": 430, "end_column": 23 }, { "span": "def __hash__(self):", "start_line": 610, "start_column": 4, "end_line": 610, "end_column": 23 } ]	[]	1	true	[ "[CLS]_", "Non", "_", "-_", "standard_", "exception_", "raised_", "in_", "special_", "method_", "[SEP]_", "class_", "Parameter_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u\\u", "hash\\u\\u_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "msg_", "=_", "\"", "unh", "ash", "able", " ", "type", ":", " ", "'{", "0", "}'\"_", "._", "format_", "(_", "self_", "._", "\\u\\u", "class\\u\\u_", "._", "\\u\\u", "name\\u\\u_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "raise_", "Type", "Error_", "(_", "msg_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Bound", "Arguments_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u\\u", "hash\\u\\u_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "msg_", "=_", "\"", "unh", "ash", "able", " ", "type", ":", " ", "'{", "0", "}'\"_", "._", "format_", "(_", "self_", "._", "\\u\\u", "class\\u\\u_", "._", "\\u\\u", "name\\u\\u_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "raise_", "Type", "Error_", "(_", "msg_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Signature_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u\\u", "hash\\u\\u_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "msg_", "=_", "\"", "unh", "ash", "able", " ", "type", ":", " ", "'{", "0", "}'\"_", "._", "format_", "(_", "self_", "._", "\\u\\u", "class\\u\\u_", "._", "\\u\\u", "name\\u\\u_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "raise_", "Type", "Error_", "(_", "msg_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	uwdata/termite-data-server/web2py/gluon/tests/test_languages.py	[ { "content": "#!/usr/bin/env python\n# -- coding: utf-8 --\n\n\"\"\"\n Unit tests for gluon.languages\n\"\"\"\n\nimport sys\nimport os\nimport unittest\nimport tempfile\nimport threading\nimport logging\n\n\nfix_sys_path()\n\n\nimport languages\nfrom storage import Storage\n\ntry:\n import multiprocessing\n\n\n\n\nexcept ImportError:\n logging.warning(\"Skipped test case, no multiprocessing module.\")\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def fix_sys_path():\n \"\"\"\n logic to have always the correct sys.path\n '', web2py/gluon, web2py/site-packages, web2py/ ...\n \"\"\"\n\n def add_path_first(path):\n sys.path = [path] + [p for p in sys.path if (\n not p == path and not p == (path + '/'))]\n\n path = os.path.dirname(os.path.abspath(__file__))\n\n if not os.path.isfile(os.path.join(path,'web2py.py')):\n i = 0\n while i<10:\n i += 1\n if os.path.exists(os.path.join(path,'web2py.py')):\n break\n path = os.path.abspath(os.path.join(path, '..'))\n\n paths = [path,\n os.path.abspath(os.path.join(path, 'site-packages')),\n os.path.abspath(os.path.join(path, 'gluon')),\n '']\n [add_path_first(path) for path in paths]", "metadata": "root.fix_sys_path", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def read_write(args):\n (filename, iterations) = args\n for i in range(0, iterations):\n content = languages.read_dict(filename)\n if not len(content):\n return False\n languages.write_dict(filename, content)\n return True", "metadata": "root.read_write", "header": "['module', '___EOS___']", "index": 49 }, { "content": " class TestLanguagesParallel(unittest.TestCase):\n\n\n", "metadata": "root.TestLanguagesParallel", "header": "['module', '___EOS___']", "index": 58 }, { "content": " def setUp(self):\n self.filename = tempfile.mktemp()\n contents = dict()\n for i in range(1000):\n contents[\"key%d\" % i] = \"value%d\" % i\n languages.write_dict(self.filename, contents)\n languages.read_dict(self.filename)", "metadata": "root.TestLanguagesParallel.setUp", "header": "['class', 'TestLanguagesParallel', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 60 }, { "content": " def tearDown(self):\n try:\n os.remove(self.filename)\n except:\n pass", "metadata": "root.TestLanguagesParallel.tearDown", "header": "['class', 'TestLanguagesParallel', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 68 }, { "content": " def test_reads_and_writes(self):\n readwriters = 10\n pool = multiprocessing.Pool(processes=readwriters)\n results = pool.map(read_write, [[self.filename, 10]] * readwriters)\n for result in results:\n self.assertTrue(result)", "metadata": "root.TestLanguagesParallel.test_reads_and_writes", "header": "['class', 'TestLanguagesParallel', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 74 }, { "content": " class TestTranslations(unittest.TestCase):\n\n\n", "metadata": "root.TestTranslations", "header": "['module', '___EOS___']", "index": 81 }, { "content": " def setUp(self):\n if os.path.isdir('gluon'):\n self.langpath = 'applications/welcome/languages'\n else:\n self.langpath = os.path.realpath(\n '../../applications/welcome/languages')\n self.http_accept_language = 'en'", "metadata": "root.TestTranslations.setUp", "header": "['class', 'TestTranslations', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 83 }, { "content": " def tearDown(self):\n pass", "metadata": "root.TestTranslations.tearDown", "header": "['class', 'TestTranslations', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 91 }, { "content": " def test_plain(self):\n T = languages.translator(self.langpath, self.http_accept_language)\n self.assertEqual(str(T('Hello World')),\n 'Hello World')\n self.assertEqual(str(T('Hello World## comment')),\n 'Hello World')\n self.assertEqual(str(T('%s %%{shop}', 1)),\n '1 shop')\n self.assertEqual(str(T('%s %%{shop}', 2)),\n '2 shops')\n self.assertEqual(str(T('%s %%{shop[0]}', 1)),\n '1 shop')\n self.assertEqual(str(T('%s %%{shop[0]}', 2)),\n '2 shops')\n self.assertEqual(str(T('%s %%{quark[0]}', 1)),\n '1 quark')\n self.assertEqual(str(T('%s %%{quark[0]}', 2)),\n '2 quarks')\n self.assertEqual(str(T.M('Hello World')),\n '<strong>Hello World</strong>')\n T.force('it')\n self.assertEqual(str(T('Hello World')),\n 'Salve Mondo')", "metadata": "root.TestTranslations.test_plain", "header": "['class', 'TestTranslations', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 94 } ]	[ { "span": "import threading", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 16 }, { "span": "from storage import Storage", "start_line": 44, "start_column": 0, "end_line": 44, "end_column": 27 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#!", "/", "usr", "/", "bin", "/", "env", " ", "python_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "--", " ", "codi", "ng", ":", " ", "utf", "-", "8", " ", "--", "_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "Unit", " ", "tests", " ", "for", " ", "glu", "on", ".", "language", "s", "\\", "10", ";\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "sys_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "unittest_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "tempfile_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "threading_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "logging_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "fix", "\\u", "sys", "\\u", "path_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "languages_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "storage_", "import_", "Storage_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "import_", "multiprocessing_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", "Import", "Error_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "logging_", "._", "warning_", "(_", "\"", "Skipped", " ", "test", " ", "case", ",", " ", "no", " ", "multipro", "cess", "ing", " ", "module", ".\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "\\u\\u", "name\\u\\u_", "==_", "'\\u", "\\u", "main", "\\u\\u'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "unittest_", "._", "main_", "(_", ")_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "fix", "\\u", "sys", "\\u", "path_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "logic", " ", "to", " ", "have", " ", "alw", "ay", "s", " ", "the", " ", "correct", " ", "sys", ".", "path", "\\", "10", ";", " ", "''", ",", " ", "web", "2py", "/", "glu", "on", ",", " ", "web", "2py", "/", "site", "-", "package", "s", ",", " ", "web", "2py", "/", " ", "...", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "add", "\\u", "path", "\\u", "first_", "(_", "path_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "sys_", "._", "path_", "=_", "[_", "path_", "]_", "+_", "[_", "p_", "for_", "p_", "in_", "sys_", "._", "path_", "if_", "(_", "\\u\\u\\uNL\\u\\u\\u_", "not_", "p_", 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Unused import	Microsoft/ivy/src/ivy/ivy_transrel.py	[ { "content": "#\n# Copyright (c) Microsoft Corporation. All Rights Reserved.\n#\n\"\"\" Functions for manipluating transition relations as two-vocabulary formulas\n\nUpdates represent the semantics of actions and states. Both kinds of\nupdates have a set of modified symbols. The difference is that action\nstyle uses \"new\" versions of the symbols to represent the post-state,\nwhile state style uses \"old\" version to represent the pre-state. In a\n\"pure\" state, the modifies set is \"all\" and the \"old\" symbols are not\nreferred to. That is, a pure state says nothing about the initial\ncondition. On the other hand, the state of a procedure is\n\"impure\". The initial state of a procedure has an empty modifies set,\nmeaning mean the current values are all equal to the initial values.\n\nAn update is represented as a triple (mod,tr,pre) where mod is a list\nof modified symbols (or \"all\") and tr is a two-vocabulary transition\nrelation, and pre is a one-vocabulary precondition. The precondition\nis stated in the negative, so that an action fails in a state s if\nst /\\ axioms /\\ pre is satisfiable. The tr and pre are both implicitly\nexistentially quantified over the skolem symbols.\n\nBecause pre is negative, we say that an action a = (mod_a,tr_a,pre_a)\nrefines (is a safe replacement for) an action b = (mod_b,tr_b,pre_b)\nwhen pre_a => pre_b and frame(mod_a) /\\ tr_a => frame(mod_b) /\\\ntr_b. Here, frame(S), where S is a set of symbols, is the condition\nthat all symbols not in S are preserved.\n\n\"\"\"\n\nfrom ivy_utils import UniqueRenamer, union_to_list, list_union, list_diff, IvyError, inverse_map, compose_maps, pretty\nfrom ivy_logic import Variable, Constant, Literal, Atom, Not, And, Or,App, RelationSort, Definition, is_prenex_universal\nfrom ivy_logic_utils import used_symbols_clauses, rename_clauses, clauses_using_symbols, simplify_clauses,\\\n used_variables_clauses, used_constants_clauses, substitute_constants_clause, substitute_constants_clauses, constants_clauses,\\\n relations_clauses, eq_lit, condition_clauses, or_clauses, and_clauses, false_clauses, true_clauses,\\\n formula_to_clauses, clauses_to_formula, formula_to_clauses_tseitin, is_ground_clause, \\\n relations_clause, Clauses, sym_inst, negate_clauses, negate\nfrom ivy_solver import unsat_core, clauses_imply, clauses_imply_formula, clauses_sat, clauses_case, get_model_clauses, clauses_model_to_clauses, get_small_model\nimport ivy_logic\nimport ivy_logic_utils as lu\nimport ivy_utils as iu\nfrom logic_util import is_tautology_equality\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# TODO: this will be quadratic for chains of updates\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def new(sym):\n \"\"\" Return the \"new\" version of symbol \"sym\", that is, the one\n representing \"sym\" in the post_state.\n \"\"\"\n return sym.prefix('new_')", "metadata": "root.new", "header": "['module', '___EOS___']", "index": 44 }, { "content": "def is_new(sym):\n return sym.startswith('new_')", "metadata": "root.is_new", "header": "['module', '___EOS___']", "index": 50 }, { "content": "def new_of(sym):\n return sym.drop_prefix('new_')", "metadata": "root.new_of", "header": "['module', '___EOS___']", "index": 53 }, { "content": "def old(sym):\n \"\"\" Return the \"old\" version of symbol \"sym\", that is, the one\n representing \"sym\" in the pre_state.\n \"\"\"\n return sym.prefix('old_')", "metadata": "root.old", "header": "['module', '___EOS___']", "index": 56 }, { "content": "def is_old(sym):\n return sym.startswith('old_')", "metadata": "root.is_old", "header": "['module', '___EOS___']", "index": 62 }, { "content": "def old_of(sym):\n return sym.drop_prefix('old_')", "metadata": "root.old_of", "header": "['module', '___EOS___']", "index": 65 }, { "content": "def rename(sym,rn):\n return sym.rename(rn)", "metadata": "root.rename", "header": "['module', '___EOS___']", "index": 68 }, { "content": "def is_skolem(sym):\n \"\"\"\n Symbols with __ in them in the TR are considerd to be implicitly existentially quantified.\n \"\"\"\n return sym.contains('__')", "metadata": "root.is_skolem", "header": "['module', '___EOS___']", "index": 71 }, { "content": "def null_update():\n return ([],true_clauses(),false_clauses())", "metadata": "root.null_update", "header": "['module', '___EOS___']", "index": 77 }, { "content": "def pure_state(clauses):\n return (None,clauses,false_clauses())", "metadata": "root.pure_state", "header": "['module', '___EOS___']", "index": 80 }, { "content": "def is_pure_state(state):\n return state[0] == None", "metadata": "root.is_pure_state", "header": "['module', '___EOS___']", "index": 83 }, { "content": "def top_state():\n return pure_state(true_clauses())", "metadata": "root.top_state", "header": "['module', '___EOS___']", "index": 86 }, { "content": "def bottom_state():\n return pure_state(false_clauses())", "metadata": "root.bottom_state", "header": "['module', '___EOS___']", "index": 89 }, { "content": "def state_postcond(state):\n return state[1]", "metadata": "root.state_postcond", "header": "['module', '___EOS___']", "index": 92 }, { "content": "def state_precond(state):\n return state[2]", "metadata": "root.state_precond", "header": "['module', '___EOS___']", "index": 95 }, { "content": "def state_to_action(update):\n \"\"\" convert from the \"state\" style to the \"action\" style \"\"\"\n updated,postcond,pre = update\n postcond,pre = clausify(postcond), clausify(pre)\n renaming = dict()\n for s in updated:\n renaming[s] = new(s)\n for s in used_symbols_clauses(postcond):\n if is_old(s):\n renaming[s] = old_of(s)\n return (updated,rename_clauses(postcond,renaming),pre)", "metadata": "root.state_to_action", "header": "['module', '___EOS___']", "index": 98 }, { "content": "def action_to_state(update):\n \"\"\" convert from the \"action\" style to the \"state\" style \"\"\"\n updated,tr,pre = update\n renaming = dict()\n for s in updated:\n renaming[s] = old(s)\n for s in used_symbols_clauses(tr):\n if is_new(s):\n renaming[s] = new_of(s)\n return (updated,rename_clauses(tr,renaming),pre)", "metadata": "root.action_to_state", "header": "['module', '___EOS___']", "index": 110 }, { "content": "def update_frame_constraint(update,relations):\n \"\"\" Return a clause list constraining all updated symbols\n to keep their previous values \"\"\"\n clauses = []\n for sym in update[0]:\n if sym in relations:\n arity = relations[sym]\n vs = [Variable(\"V{}\".format(i)) for i in range(0,arity)]\n lit1 = Literal(1,Atom(sym,vs))\n lit2 = Literal(1,Atom(new(sym),vs))\n clauses += [[~lit1,lit2],[lit1,~lit2]]\n else:\n clauses.append([eq_lit(Constant(sym),Constant(new(sym)))])\n return Clauses(clauses)", "metadata": "root.update_frame_constraint", "header": "['module', '___EOS___']", "index": 121 }, { "content": "def frame_def(sym,op):\n \"\"\" Add the condition that sym remains unchanged to a\n transition relation (using op = {new,old})\"\"\"\n lhs = sym_inst(op(sym) if op is new else sym)\n rhs = sym_inst(sym if op is new else op(sym))\n dfn = Definition(lhs,rhs)\n return dfn", "metadata": "root.frame_def", "header": "['module', '___EOS___']", "index": 137 }, { "content": "def frame(updated,relations,op):\n \"\"\" Return a clause list constraining all updated symbols\n to keep their op values, for op = new,old \"\"\"\n return Clauses([],[frame_def(sym,op) for sym in updated])", "metadata": "root.frame", "header": "['module', '___EOS___']", "index": 145 }, { "content": "def symbol_frame_cond(sym,sig):\n \"\"\" Return transition relation implying that sym remains unchanged \"\"\"\n return Clauses([],[frame_def(sym,new)])", "metadata": "root.symbol_frame_cond", "header": "['module', '___EOS___']", "index": 150 }, { "content": "def frame_update(update,in_scope,sig):\n \"\"\" Modify an update so all symbols in \"in_scope\" are on the\n update list, preserving semantics.\n \"\"\"\n updated,clauses,pre = update\n moded = set(updated)\n dfns = []\n for sym in in_scope:\n if sym not in moded:\n updated.append(sym)\n dfns.append(frame_def(sym,new))\n return (updated,and_clauses(clauses,Clauses([],dfns)),pre)", "metadata": "root.frame_update", "header": "['module', '___EOS___']", "index": 154 }, { "content": "def diff_frame(updated1,updated2,relations,op):\n if updated1 == None or updated2 == None: return Clauses([])\n updated = list_diff(updated2,updated1)\n return frame(updated,relations,op)", "metadata": "root.diff_frame", "header": "['module', '___EOS___']", "index": 167 }, { "content": "def updated_join(updated1,updated2):\n if updated1 == None or updated1 == None: return None\n return list_union(updated1,updated2)", "metadata": "root.updated_join", "header": "['module', '___EOS___']", "index": 172 }, { "content": "def join(s1,s2,relations,op):\n u1,c1,p1 = s1\n u2,c2,p2 = s2\n df12 = diff_frame(u1,u2,relations,op)\n df21 = diff_frame(u2,u1,relations,op)\n c1 = and_clauses(c1,df12)\n c2 = and_clauses(c2,df21)\n p1 = and_clauses(p1,df12)\n p2 = and_clauses(p2,df21)\n u = updated_join(u1,u2)\n c = or_clauses(c1,c2)\n p = or_clauses(p1,p2)\n return (u,c,p)", "metadata": "root.join", "header": "['module', '___EOS___']", "index": 176 }, { "content": "class CounterExample(object):", "metadata": "root.CounterExample", "header": "['module', '___EOS___']", "index": 190 }, { "content": " def __init__(self,clauses):\n self.clauses = clauses", "metadata": "root.CounterExample.__init__", "header": "['class', 'CounterExample', '(', 'object', ')', ':', '___EOS___']", "index": 191 }, { "content": " def __nonzero__(self):\n return False", "metadata": "root.CounterExample.__nonzero__", "header": "['class', 'CounterExample', '(', 'object', ')', ':', '___EOS___']", "index": 193 }, { "content": "def clauses_imply_formula_cex(clauses,fmla):\n if clauses_imply_formula(clauses,fmla):\n return True\n return CounterExample(conjoin(clauses,negate_clauses(formula_to_clauses(fmla))))", "metadata": "root.clauses_imply_formula_cex", "header": "['module', '___EOS___']", "index": 196 }, { "content": "def implies(s1,s2,axioms,relations,op):\n u1,c1,p1 = s1\n u2,c2,p2 = s2\n if u1 == None and u2 != None:\n return False\n# print \"c1: {}\".format(c1)\n# print \"axioms: {}\".format(axioms)\n# print \"df: {}\".format(diff_frame(u1,u2,relations,op))\n c1 = and_clauses(c1,axioms,diff_frame(u1,u2,relations,op))\n if isinstance(c2,Clauses):\n if not c2.is_universal_first_order() or not p2.is_universal_first_order():\n return False\n c2 = and_clauses(c2,diff_frame(u2,u1,relations,op))\n return clauses_imply(p1,p2) and clauses_imply(c1,c2)\n else:\n if not is_prenex_universal(c2) or not is_prenex_universal(p2):\n return False\n c2 = And(c2,clauses_to_formula(diff_frame(u2,u1,relations,op)))\n return clauses_imply_formula_cex(p1,p2) and clauses_imply_formula_cex(c1,c2)", "metadata": "root.implies", "header": "['module', '___EOS___']", "index": 201 }, { "content": "def implies_state(s1,s2,axioms,relations):\n return implies(s1,s2,axioms,relations,old)", "metadata": "root.implies_state", "header": "['module', '___EOS___']", "index": 221 }, { "content": "def implies_action(s1,s2,axioms,relations):\n return implies(s1,s2,axioms,relations,new)", "metadata": "root.implies_action", "header": "['module', '___EOS___']", "index": 224 }, { "content": "def join_state(s1,s2,relations):\n return join(clausify_state(s1),clausify_state(s2),relations,old)", "metadata": "root.join_state", "header": "['module', '___EOS___']", "index": 227 }, { "content": "def join_action(s1,s2,relations):\n return join(s1,s2,relations,new)", "metadata": "root.join_action", "header": "['module', '___EOS___']", "index": 230 }, { "content": "def condition_update_on_fmla(update,fmla,relations):\n \"\"\"Given an update, return an update conditioned on fmla. Maybe an \"else\" would\n be useful too :-).\n \"\"\"\n updated,if_clauses,if_pre = update\n else_clauses = update_frame_constraint(update,relations)\n if_clauses = condition_clauses(if_clauses,fmla)\n else_clauses = condition_clauses(else_clauses,Not(fmla))\n## print \"if_clauses: %s\" % if_clauses\n## print \"else_clauses: %s\" % else_clauses\n return updated,(and_clauses(if_clauses,else_clauses)),if_pre", "metadata": "root.condition_update_on_fmla", "header": "['module', '___EOS___']", "index": 233 }, { "content": "def rename_distinct(clauses1,clauses2):\n \"\"\" rename skolems in clauses1 so they don't occur in clauses2.\n \"\"\"\n# print \"rename_distinct clauses1 = {}\".format(clauses1)\n# print \"rename_distinct clauses2 = {!r}\".format(clauses2)\n used1 = used_symbols_clauses(clauses1)\n used2 = used_symbols_clauses(clauses2)\n rn = UniqueRenamer('',used2)\n map1 = dict()\n for s in used1:\n if is_skolem(s):\n map1[s] = rename(s,rn)\n return rename_clauses(clauses1,map1)", "metadata": "root.rename_distinct", "header": "['module', '___EOS___']", "index": 245 }, { "content": "def compose_updates(update1,axioms,update2):\n updated1, clauses1, pre1 = update1\n updated2, clauses2, pre2 = update2\n clauses2 = rename_distinct(clauses2,clauses1)\n pre2 = rename_distinct(pre2,clauses1)\n# print \"clauses2 = {}\".format(clauses2)\n us1 = set(updated1)\n us2 = set(updated2)\n mid = us1.intersection(us2)\n mid_ax = clauses_using_symbols(mid,axioms)\n used = used_symbols_clauses(and_clauses(clauses1,clauses2))\n rn = UniqueRenamer('__m_',used)\n map1 = dict()\n map2 = dict()\n for v in updated1:\n map2[v] = new(v)\n for mv in mid:\n mvf = rename(mv,rn)\n map1[new(mv)] = mvf\n map2[mv] = mvf\n clauses1 = rename_clauses(clauses1,map1)\n new_clauses = and_clauses(clauses1, rename_clauses(and_clauses(clauses2,mid_ax),map2))\n new_updated = list(us1.union(us2))\n# print \"pre1 before = {}\".format(pre1)\n pre1 = and_clauses(pre1,diff_frame(updated1,updated2,None,new)) # keep track of post-state of assertion failure\n# print \"pre1 = {}\".format(pre1)\n new_pre = or_clauses(pre1,and_clauses(clauses1,rename_clauses(and_clauses(pre2,mid_ax),map2)))\n# print \"new_pre = {}\".format(new_pre)\n return (new_updated,new_clauses,new_pre)", "metadata": "root.compose_updates", "header": "['module', '___EOS___']", "index": 261 }, { "content": "def exist_quant_map(syms,clauses):\n used = used_symbols_clauses(clauses)\n rn = UniqueRenamer('__',used)\n map1 = dict()\n for s in syms:\n map1[s] = rename(s,rn)\n return map1,rename_clauses(clauses,map1)", "metadata": "root.exist_quant_map", "header": "['module', '___EOS___']", "index": 291 }, { "content": "def exist_quant(syms,clauses):\n map1,res = exist_quant_map(syms,clauses)\n return res", "metadata": "root.exist_quant", "header": "['module', '___EOS___']", "index": 299 }, { "content": "def conjoin(clauses1,clauses2):\n \"\"\" Conjoin clause sets, taking into account skolems \"\"\"\n return and_clauses(clauses1,rename_distinct(clauses2,clauses1))", "metadata": "root.conjoin", "header": "['module', '___EOS___']", "index": 303 }, { "content": "def constrain_state(upd,fmla):\n return (upd[0],and_clauses(upd[1],formula_to_clauses(fmla)),upd[2])", "metadata": "root.constrain_state", "header": "['module', '___EOS___']", "index": 307 }, { "content": "def hide(syms,update):\n syms = set(syms)\n syms.update(new(s) for s in update[0] if s in syms)\n new_updated = [s for s in update[0] if s not in syms]\n new_tr = exist_quant(syms,update[1])\n new_pre = exist_quant(syms,update[2])\n return (new_updated,new_tr,new_pre)", "metadata": "root.hide", "header": "['module', '___EOS___']", "index": 310 }, { "content": "def hide_state(syms,update):\n syms = set(syms)\n if update[0] != None:\n syms.update(old(s) for s in update[0] if s in syms)\n new_updated = [s for s in update[0] if s not in syms]\n else:\n new_updated = None\n new_tr = exist_quant(syms,update[1])\n new_pre = exist_quant(syms,update[2])\n return (new_updated,new_tr,new_pre)", "metadata": "root.hide_state", "header": "['module', '___EOS___']", "index": 318 }, { "content": "def hide_state_map(syms,update):\n syms = set(syms)\n if update[0] != None:\n syms.update(old(s) for s in update[0] if s in syms)\n new_updated = [s for s in update[0] if s not in syms]\n else:\n new_updated = None\n trmap,new_tr = exist_quant_map(syms,update[1])\n new_pre = exist_quant(syms,update[2])\n return trmap, (new_updated,new_tr,new_pre)", "metadata": "root.hide_state_map", "header": "['module', '___EOS___']", "index": 329 }, { "content": "def subst_action(update,subst):\n print subst\n syms = dict(subst.iteritems())\n syms.update((new(s),new(syms[s])) for s in update[0] if s in syms)\n print syms\n new_updated = [subst.get(s,s) for s in update[0]]\n new_tr = rename_clauses(update[1],syms)\n new_pre = rename_clauses(update[2],syms)\n return (new_updated,new_tr,new_pre)", "metadata": "root.subst_action", "header": "['module', '___EOS___']", "index": 340 }, { "content": "def forward_image_map(pre_state,axioms,update):\n updated, clauses, _precond = update\n# print \"transition_relation: {}\".format(clauses)\n pre_ax = clauses_using_symbols(updated,axioms)\n pre = conjoin(pre_state,pre_ax)\n map1,res = exist_quant_map(updated,conjoin(pre,clauses))\n res = rename_clauses(res, dict((new(x),x) for x in updated))\n## print \"before simp: %s\" % res\n # res = simplify_clauses(res)\n return map1,res", "metadata": "root.forward_image_map", "header": "['module', '___EOS___']", "index": 350 }, { "content": "def forward_image(pre_state,axioms,update):\n map1,res = forward_image_map(pre_state,axioms,update)\n return res", "metadata": "root.forward_image", "header": "['module', '___EOS___']", "index": 361 }, { "content": "def action_failure(action):\n upd,tr,pre = action\n return upd,pre,true_clauses()", "metadata": "root.action_failure", "header": "['module', '___EOS___']", "index": 365 }, { "content": "class ActionFailed(Exception):", "metadata": "root.ActionFailed", "header": "['module', '___EOS___']", "index": 369 }, { "content": " def __init__(self,clauses,trans):\n self.clauses = clauses\n self.trans = trans", "metadata": "root.ActionFailed.__init__", "header": "['class', 'ActionFailed', '(', 'Exception', ')', ':', '___EOS___']", "index": 370 }, { "content": "def clausify(f):\n return f if isinstance(f,Clauses) else formula_to_clauses(f)", "metadata": "root.clausify", "header": "['module', '___EOS___']", "index": 374 }, { "content": "def clausify_state(s):\n upd,tr,pre = s\n return (upd,clausify(tr),clausify(pre))", "metadata": "root.clausify_state", "header": "['module', '___EOS___']", "index": 377 }, { "content": "def remove_taut_eqs_clauses(clauses):\n return Clauses(\n [f for f in clauses.fmlas if not is_tautology_equality(f)],\n clauses.defs\n )", "metadata": "root.remove_taut_eqs_clauses", "header": "['module', '___EOS___']", "index": 382 }, { "content": "def extract_pre_post_model(clauses,model,updated):\n renaming = dict((v,new(v)) for v in updated)\n ignore = lambda s: s.is_skolem() or is_new(s)\n pre_clauses = clauses_model_to_clauses(clauses,ignore = ignore,model = model,numerals=use_numerals())\n ignore = lambda s: s.is_skolem() or (not is_new(s) and s in renaming)\n post_clauses = clauses_model_to_clauses(clauses,ignore = ignore,model = model,numerals=use_numerals())\n post_clauses = rename_clauses(post_clauses,inverse_map(renaming))\n return map(remove_taut_eqs_clauses,(pre_clauses,post_clauses))", "metadata": "root.extract_pre_post_model", "header": "['module', '___EOS___']", "index": 388 }, { "content": "def compose_state_action(state,axioms,action, check=True):\n \"\"\" Compose a state and an action, returning a state \"\"\"\n# print \"state: {}\".format(state)\n# print \"action: {}\".format(action)\n su,sc,sp = state\n au,ac,ap = action\n sc,sp = clausify(sc),clausify(sp)\n if check:\n pre_test = and_clauses(and_clauses(sc,ap),axioms)\n model = small_model_clauses(pre_test)\n if model != None:\n trans = extract_pre_post_model(pre_test,model,au)\n post_updated = [new(s) for s in au]\n pre_test = exist_quant(post_updated,pre_test)\n raise ActionFailed(pre_test,trans)\n if su != None: # none means all moded\n ssu = set(su) # symbols already modified in state\n rn = dict((x,old(x)) for x in au if x not in ssu)\n sc = rename_clauses(sc,rn)\n ac = rename_clauses(ac,rn)\n su = list(su)\n union_to_list(su,au)\n img = forward_image(sc,axioms,action)\n## print \"compose: {}\".format((su,img,sp))\n return (su,img,sp)", "metadata": "root.compose_state_action", "header": "['module', '___EOS___']", "index": 397 }, { "content": "def reverse_image(post_state,axioms,update):\n updated, clauses, _precond = update\n post_ax = clauses_using_symbols(updated,axioms)\n post_clauses = conjoin(post_state,post_ax)\n post_clauses = rename_clauses(post_clauses, dict((x,new(x)) for x in updated))\n post_updated = [new(s) for s in updated]\n res = exist_quant(post_updated,conjoin(clauses,post_clauses))\n# res = simplify_clauses(res)\n return res", "metadata": "root.reverse_image", "header": "['module', '___EOS___']", "index": 424 }, { "content": "def interpolant(clauses1,clauses2,axioms,interpreted):\n# print \"interpolant clauses1={} clauses2={}\".format(clauses1,clauses2)\n# print \"axioms = {}\".format(axioms)\n foo = and_clauses(clauses1,axioms)\n clauses2 = simplify_clauses(clauses2)\n core = unsat_core(clauses2,foo)\n if core == None:\n return None\n# print \"core: %s\" % core\n return core, interp_from_unsat_core(clauses2,foo,core,interpreted)", "metadata": "root.interpolant", "header": "['module', '___EOS___']", "index": 434 }, { "content": "def forward_interpolant(pre_state,update,post_state,axioms,interpreted):\n return interpolant(forward_image(pre_state,axioms,update),post_state,axioms,interpreted)", "metadata": "root.forward_interpolant", "header": "['module', '___EOS___']", "index": 445 }, { "content": "def reverse_interpolant_case(post_state,update,pre_state,axioms,interpreted):\n pre = reverse_image(post_state,axioms,update)\n pre_case = clauses_case(pre)\n## print \"pre_case1: {}\".format(pre_case)\n pre_case = [cl for cl in pre_case if len(cl) <= 1\n and is_ground_clause(cl)\n and not any(is_skolem(r) for r,n in relations_clause(cl))]\n## print \"pre_case2: {}\".format(pre_case)\n return interpolant(pre_state,pre_case,axioms,interpreted)", "metadata": "root.reverse_interpolant_case", "header": "['module', '___EOS___']", "index": 448 }, { "content": "def interpolant_case(pre_state,post,axioms,interpreted):\n# print \"interpolant_case: before clauses_case\"\n# print \"interpolant_case post: {}\".format(post)\n post_case = clauses_case(post)\n# print \"interpolant_case: after clauses_case\"\n## print \"post_case1: {}\".format(post_case)\n post_case = Clauses([cl for cl in post_case.clauses\n if len(cl) <= 1\n and is_ground_clause(cl)\n and not any(is_skolem(r) for r,n in relations_clause(cl))])\n# print \"interpolant_case: after filtering\"\n# print \"post_case2: {}\".format(post_case)\n return interpolant(pre_state,post_case,axioms,interpreted)", "metadata": "root.interpolant_case", "header": "['module', '___EOS___']", "index": 458 }, { "content": "def interp_from_unsat_core(clauses1,clauses2,core,interpreted):\n used_syms = used_symbols_clauses(core)\n vars = used_variables_clauses(core)\n if vars:\n# print \"interpolant would require skolem constants\"\n return None\n core_consts = used_constants_clauses(core)\n clauses2_consts = used_constants_clauses(clauses2)\n# print \"interp_from_unsat_core core_consts = {}\".format(map(str,core_consts))\n# print \"interp_from_unsat_core clauses2_consts = {}\".format(map(str,clauses2_consts))\n renaming = dict()\n i = 0\n for v in core_consts:\n if v not in clauses2_consts or v.is_skolem(): # and v not in interpreted:\n renaming[v] = Variable('V' + str(i),Constant(v).get_sort())\n i += 1\n# print \"interp_from_unsat_core core = {}\".format(core)\n# print \"interp_from_unsat_core renaming = {}\".format(renaming)\n renamed_core = substitute_constants_clauses(core,renaming)\n# print \"interp_from_unsat_core renamed_core = {}\".format(renamed_core)\n res = simplify_clauses(Clauses([Or(*[negate(c) for c in renamed_core.fmlas])]))\n# print \"interp_from_unsat_core res = {}\".format(res)\n return res", "metadata": "root.interp_from_unsat_core", "header": "['module', '___EOS___']", "index": 472 }, { "content": "def small_model_clauses(cls):\n # Don't try to shrink the integers!\n return get_small_model(cls,ivy_logic.uninterpreted_sorts(),[])", "metadata": "root.small_model_clauses", "header": "['module', '___EOS___']", "index": 496 }, { "content": "class History(object):\n \"\"\" A history is a symbolically represented sequence of states. \"\"\"\n\n\n\n\n", "metadata": "root.History", "header": "['module', '___EOS___']", "index": 500 }, { "content": " def __init__(self,state,maps = []):\n \"\"\" state is the initial state of the history \"\"\"\n# print \"init: {}\".format(state)\n update,clauses,pre = state\n assert update == None and pre.is_false()\n self.maps = maps # sequence of symbol renamings resulting from forward images\n self.post = clauses # characteristic formula of the history", "metadata": "root.History.__init__", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 502 }, { "content": " def forward_step(self,axioms,update):\n \"\"\" This is like forward_image on states, but records the\n symbol renaming used in the forward image. The list of\n renamings is used to reconstruct the state symbols at previous\n times in the history. A new history after forward step is\n returned. \"\"\"\n# print \"step: pre = {}, axioms = {}, update = {}\".format(self.post,axioms,update)\n map1,res = forward_image_map(self.post,axioms,update)\n return History(pure_state(res),self.maps + [map1])", "metadata": "root.History.forward_step", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 511 }, { "content": " def assume(self,clauses):\n \"\"\" Returns a new history in which the final state is constrainted to\n satisfy \"clauses\".\"\"\"\n# print \"assume post: {}\".format(self.post)\n# print \"assume: {}\".format(clauses)\n if isinstance(clauses,tuple): # a pure state\n assert is_pure_state(clauses)\n clauses = clauses[1]\n clauses = rename_distinct(clauses,self.post) # TODO: shouldn't be needed\n return History(pure_state(and_clauses(self.post,clauses)),self.maps)", "metadata": "root.History.assume", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 521 }, { "content": " def ignore(self,s,img,renaming):\n res = not(s in img or not s.is_skolem() and s not in renaming)\n# print \"ignore: {} = {}\".format(s,res)\n return res", "metadata": "root.History.ignore", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 532 }, { "content": " def satisfy(self, axioms, _get_model_clauses=None):\n \"\"\" Produce a state sequence if the symbolic history contains\n one. Returns the sort universes and a sequence of states, or\n None if the history is vacuous. \"\"\"\n\n if _get_model_clauses is None:\n _get_model_clauses = small_model_clauses\n\n# print \"axioms: {}\".format(axioms)\n\n # A model of the post-state embeds a valuation for each time\n # in the history.\n post = and_clauses(self.post,axioms)\n# print \"post: {}\".format(post)\n print \"bounded check {\"\n model = _get_model_clauses(post)\n print \"} bounded check\"\n if model == None:\n# print \"core = {}\".format(unsat_core(post,true_clauses()))\n return None\n\n # we reconstruct the sub-model for each state composing the\n # recorded renamings in reverse order. Here \"renaming\" maps\n # symbols representing a past time onto current time skolems\n renaming,states,maps = {},[],reversed(self.maps)\n while True:\n # ignore all symbols except those representing the given past time\n img = set(renaming[s] for s in renaming if not s.is_skolem())\n ignore = lambda s: self.ignore(s,img,renaming)\n # get the sub-mode for the given past time as a formula\n clauses = clauses_model_to_clauses(post,ignore = ignore, model = model, numerals=use_numerals())\n # map this formula into the past using inverse map\n clauses = rename_clauses(clauses,inverse_map(renaming))\n # remove tautology equalities, TODO: not sure if this is correct here\n clauses = Clauses(\n [f for f in clauses.fmlas if not is_tautology_equality(f)],\n clauses.defs\n )\n states.append(clauses)\n try:\n # update the inverse map by composing it with inverse\n # of the next renaming (in reverse order)\n renaming = compose_maps(next(maps),renaming)\n except StopIteration:\n break\n uvs = model.universes(numerals=use_numerals())\n# print \"uvs: {}\".format(uvs)\n return uvs, [pure_state(clauses) for clauses in reversed(states)]", "metadata": "root.History.satisfy", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 537 }, { "content": "def use_numerals():\n return iu.use_numerals.get()", "metadata": "root.use_numerals", "header": "['module', '___EOS___']", "index": 587 } ]	[ { "span": "from ivy_utils import UniqueRenamer, union_to_list, list_union, list_diff, IvyError, inverse_map, compose_maps, pretty", "start_line": 30, "start_column": 0, "end_line": 30, "end_column": 118 }, { "span": "from ivy_logic import Variable, Constant, Literal, Atom, Not, And, Or,App, RelationSort, Definition, is_prenex_universal", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 120 }, { "span": "from ivy_logic_utils import used_symbols_clauses, rename_clauses, clauses_using_symbols, simplify_clauses,\\\n used_variables_clauses, used_constants_clauses, substitute_constants_clause, substitute_constants_clauses, constants_clauses,\\\n relations_clauses, eq_lit, condition_clauses, or_clauses, and_clauses, false_clauses, true_clauses,\\\n formula_to_clauses, clauses_to_formula, formula_to_clauses_tseitin, is_ground_clause, \\\n relations_clause, Clauses, sym_inst, negate_clauses, negate", "start_line": 32, "start_column": 0, "end_line": 36, "end_column": 63 }, { "span": "from ivy_solver import unsat_core, clauses_imply, clauses_imply_formula, clauses_sat, clauses_case, get_model_clauses, clauses_model_to_clauses, get_small_model", "start_line": 37, "start_column": 0, "end_line": 37, "end_column": 160 }, { "span": "import ivy_logic_utils as lu", "start_line": 39, "start_column": 0, "end_line": 39, "end_column": 28 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", "_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Copy", "right", " ", "(", "c", ")", " ", "Micro", "soft", " ", "Cor", "porat", "ion", ".", " ", "All", " ", "Rig", "hts", " ", "Reserve", "d", "._", "\\u\\u\\uNL\\u\\u\\u_", "#", "_", "\\u\\u\\uNL\\u\\u\\u_", "\"\"\"", " ", "Function", "s", " ", "for", " ", "manip", "lua", "ting", " ", "transiti", "on", " ", "relation", "s", " ", "as", " ", "two", "-", "vocab", "ular", "y", " ", "formulas", "\\", "10", ";", "\\", "10", ";", "Update", "s", " ", "represent", " ", "the", " ", "semantics", " ", "of", " ", "action", "s", " ", "and", " ", "state", "s", ".", " ", " ", "Bot", "h", " ", "kinds", " ", "of", "\\", "10", ";", "update", "s", " ", "have", " ", "a", " ", "set", " ", "of", " ", "modifi", "ed", " ", "symbols", ".", " ", "The", " ", "difference", " ", "is", " ", "tha", "t", " ", "action", "\\", "10", ";", "style", " ", "use", "s", " ", "\"", "new", "\"", " ", "version", "s", " ", "of", " ", "the", " ", "symbols", " ", "to", " ", "represent", " ", "the", " ", "post", "-", "state", ",", "\\", "10", ";", "whi", "le", " ", "state", " ", "style", " 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	uwdata/termite-data-server/web2py/scripts/tickets2email.py	[ { "content": "#!/usr/bin/env python\n# -- coding: utf-8 --\n\nimport sys\nimport os\nimport time\nimport stat\nimport datetime\n\nfrom gluon.utils import md5_hash\nfrom gluon.restricted import RestrictedError\nfrom gluon.tools import Mail\n\n\npath = os.path.join(request.folder, 'errors')\nhashes = {}\nmail = Mail()\n\n### CONFIGURE HERE\nSLEEP_MINUTES = 5\nALLOW_DUPLICATES = True\nmail.settings.server = 'localhost:25'\nmail.settings.sender = 'you@localhost'\nadministrator_email = 'you@localhost'\n### END CONFIGURATION\n\nwhile 1:\n for file in os.listdir(path):\n if not ALLOW_DUPLICATES:\n fileobj = open(file, 'r')\n try:\n file_data = fileobj.read()\n finally:\n fileobj.close()\n key = md5_hash(file_data)\n\n if key in hashes:\n continue\n\n hashes[key] = 1\n\n error = RestrictedError()\n error.load(request, request.application, file)\n\n mail.send(to=administrator_email,\n subject='new web2py ticket', message=error.traceback)\n\n os.unlink(os.path.join(path, file))\n time.sleep(SLEEP_MINUTES * 60)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "import sys", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 10 }, { "span": "import stat", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 11 }, { "span": "import datetime", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 15 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#!", "/", "usr", "/", "bin", "/", "env", " ", "python_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "--", " ", "codi", "ng", ":", " ", "utf", "-", "8", " ", "--", "_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "sys_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "time_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "stat_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "datetime_", 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"or", "\\u", "email_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "subject_", "=_", "'", "new", " ", "web", "2py", " ", "tick", "et", "'_", ",_", "message_", "=_", "error_", "._", "traceback_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "os_", "._", "unlink_", "(_", "os_", "._", "path_", "._", "join_", "(_", "path_", ",_", "file_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "time_", "._", "sleep_", "(_", "SLEEP", "\\u", "MINUTE", "S_", "*_", "60_", ")_", "\\u\\u\\uDEDENT\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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Unused import	mozilla/inventory/api_v2/reverse_dns_handler.py	[ { "content": "from piston.handler import BaseHandler, rc\nfrom systems.models import System, SystemRack,SystemStatus,NetworkAdapter,KeyValue,ScheduledTask\nfrom truth.models import Truth, KeyValue as TruthKeyValue\nfrom MacroExpansion import MacroExpansion\nfrom KeyValueTree import KeyValueTree\nimport re\ntry:\n import json\nexcept:\n from django.utils import simplejson as json\nfrom django.test.client import Client\nfrom settings import API_ACCESS\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ReverseDNSHandler(BaseHandler):\n allowed_methods = API_ACCESS\n model = System\n #fields = ('id', 'asset_tag', 'oob_ip', 'hostname', 'operating_system', ('system_status',('status', 'id')))\n exclude = ()", "metadata": "root.ReverseDNSHandler", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def read(self, request, reverse_dns_zone=None, reverse_dns_action=None):\n if reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones':\n tasks = []\n for task in ScheduledTask.objects.get_all_reverse_dns():\n tasks.append(task.task)\n #ScheduledTask.objects.delete_all_reverse_dns()\n return tasks\n elif reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones_with_names':\n truths = Truth.objects.select_related().filter(keyvalue__key='is_reverse_dns_zone',keyvalue__value='True')\n truth_list = []\n for t in truths:\n truth_list.append({'name':t.name.strip(),'description':t.description.strip()})\n return truth_list\n elif reverse_dns_zone and reverse_dns_action == 'view_hosts':\n scope_options = []\n client = Client()\n hosts = json.loads(client.get('/api/keyvalue/?key_type=system_by_zone&zone=%s' % reverse_dns_zone, follow=True).content)\n #print hosts\n adapter_list = []\n for host in hosts:\n if 'hostname' in host:\n the_url = '/api/keyvalue/?key_type=adapters_by_system_and_zone&reverse_dns_zone=%s&system=%s' % (reverse_dns_zone, host['hostname'])\n try:\n adapter_list.append(json.loads(client.get(the_url, follow=True).content))\n except:\n pass\n #d = DHCPInterface(scope_options, adapter_list)\n #return d.get_hosts()\n return None\n else:\n resp = rc.NOT_FOUND\n resp.write(\"I'm sorry but I don't understand your request\")", "metadata": "root.ReverseDNSHandler.read", "header": "['class', 'ReverseDNSHandler', '(', 'BaseHandler', ')', ':', '___EOS___']", "index": 17 } ]	[ { "span": "from systems.models import System, SystemRack,SystemStatus,NetworkAdapter,KeyValue,ScheduledTask", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 96 }, { "span": "from truth.models import Truth, KeyValue as TruthKeyValue", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 57 }, { "span": "from MacroExpansion import MacroExpansion", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 41 }, { "span": "from KeyValueTree import KeyValueTree", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 37 }, { "span": "import re", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 9 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "from_", "pis", "ton_", "._", "handler_", "import_", "Base", "Handler_", ",_", "rc_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "systems_", "._", "models_", "import_", "System_", ",_", "System", "Rack", "_", ",_", "System", "Status_", ",_", "Network", "Adapter_", ",_", "Key", "Value_", ",_", "Schedule", "d", "Task_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "truth_", "._", "models_", "import_", "Tru", "th_", ",_", "Key", "Value_", "as_", "Tru", "th", "Key", "Value_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "Macro", "Expa", "nsion", "_", "import_", "Macro", "Expa", "nsion", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "Key", "Value", "Tree_", "import_", "Key", "Value", "Tree_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "re_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "try_", ":_", 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Unused import	ImageEngine/gaffer/python/GafferArnoldUI/ArnoldRenderUI.py	[ { "content": "##########################################################################\n#\n# Copyright (c) 2012-2014, John Haddon. All rights reserved.\n#\n# Redistribution and use in source and binary forms, with or without\n# modification, are permitted provided that the following conditions are\n# met:\n#\n# * Redistributions of source code must retain the above\n# copyright notice, this list of conditions and the following\n# disclaimer.\n#\n# * Redistributions in binary form must reproduce the above\n# copyright notice, this list of conditions and the following\n# disclaimer in the documentation and/or other materials provided with\n# the distribution.\n#\n# * Neither the name of John Haddon nor the names of\n# any other contributors to this software may be used to endorse or\n# promote products derived from this software without specific prior\n# written permission.\n#\n# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS\n# IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,\n# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR\n# PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR\n# CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,\n# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,\n# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR\n# PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF\n# LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING\n# NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS\n# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n#\n##########################################################################\n\nimport IECore\n\nimport Gaffer\nimport GafferUI\nimport GafferArnold\n\nGaffer.Metadata.registerNode(\n\n\tGafferArnold.ArnoldRender,\n\n\t\"description\",\n\t\"\"\"\n\tPerforms offline batch rendering using the\n\tArnold renderer. This is done in two phases -\n\tfirst a .ass file is generated and then Arnold\n\tis invoked to render it. Note though that the .ass\n\tfile is lightweight, and contains little more than\n\ta procedural which will use Gaffer to generate the\n\tscene at render time.\n\t\"\"\",\n\n\tplugs = {\n\n\t\t\"mode\" : [\n\n\t\t\t\"description\",\n\t\t\t\"\"\"\n\t\t\tWhen in the standard \"Render\" mode, an .ass\n\t\t\tfile is generated and then renderered in Arnold.\n\t\t\tAlternatively, just the .ass file can be generated\n\t\t\tand then another method can be used to post-process\n\t\t\tit or launch the render - a SystemCommand node may\n\t\t\tbe useful for this. Finally, an expanded .ass file\n\t\t\tmay be generated - this will contain the entire\n\t\t\texpanded scene rather than just a procedural, and can\n\t\t\tbe useful for debugging.\n\t\t\t\"\"\",\n\n\t\t\t\"preset:Render\", \"render\",\n\t\t\t\"preset:Generate .ass only\", \"generate\",\n\t\t\t\"preset:Generate expanded .ass\", \"expand\",\n\n\t\t\t\"nodule:type\", \"\",\n\t\t\t\"plugValueWidget:type\", \"GafferUI.PresetsPlugValueWidget\",\n\n\t\t],\n\n\t\t\"fileName\" : [\n\n\t\t\t\"description\",\n\t\t\t\"\"\"\n\t\t\tThe name of the .ass file to be generated.\n\t\t\t\"\"\",\n\n\t\t\t\"nodule:type\", \"\",\n\t\t\t\"plugValueWidget:type\", \"GafferUI.FileSystemPathPlugValueWidget\",\n\t\t\t\"pathPlugValueWidget:bookmarks\", \"ass\",\n\t\t\t\"pathPlugValueWidget:leaf\", True,\n\t\t\t\"fileSystemPathPlugValueWidget:extensions\", IECore.StringVectorData( [ \"ass\" ] ),\n\n\t\t],\n\n\t\t\"verbosity\" : [\n\n\t\t\t\"description\",\n\t\t\t\"\"\"\n\t\t\tControls the verbosity of the Arnold 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Variable defined multiple times	zeaphoo/cocopot/tests/test_compat.py	[ { "content": "def test_compat():\n assert to_bytes(None) == None\n assert to_unicode(None) == None\n with pytest.raises(ZeroDivisionError):\n try:\n s = 1/0\n except:\n exc_type, exc_value, tb = sys.exc_info()\n reraise(exc_type, exc_value, tb)\n\n with pytest.raises(ZeroDivisionError):\n try:\n s = 1/0\n except:\n exc_type, exc_value, tb = sys.exc_info()\n reraise(exc_type, exc_value, None)", "metadata": "root.test_compat", "header": "['module', '___EOS___']", "index": 7 } ]	[ { "span": "s ", "start_line": 12, "start_column": 12, "end_line": 12, "end_column": 13 } ]	[]	1	true	[ "[CLS]_", "Variable_", "defined_", "multiple_", "times_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "test\\u", "compat_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "assert_", "to", "\\u", "bytes_", "(_", "None_", ")_", "==_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "assert_", "to", "\\u", "unicode_", "(_", "None_", ")_", "==_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "with_", "pytest_", "._", "raises_", "(_", "Zero", "Divis", "ion", "Error_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "s_", "=_", "1_", "/_", "0_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "exc", "\\u", "type_", ",_", "exc", "\\u", "value_", ",_", "tb_", "=_", "sys_", "._", "exc", "\\u", "info_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "reraise", "_", "(_", "exc", "\\u", "type_", ",_", "exc", "\\u", "value_", ",_", "tb_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "with_", "pytest_", "._", "raises_", "(_", "Zero", "Divis", "ion", "Error_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "s_", "=_", "1_", "/_", "0_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "exc", "\\u", "type_", ",_", "exc", "\\u", "value_", ",_", "tb_", "=_", "sys_", "._", "exc", "\\u", "info_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "reraise", "_", "(_", "exc", "\\u", "type_", ",_", "exc", "\\u", "value_", ",_", "None_", ")_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	vivekn/sentiment/info.py	[ { "content": "from __future__ import division\nfrom math import log, exp\nfrom operator import mul\nfrom collections import Counter\nimport os\nimport pylab\nimport cPickle\n\n\n\npos = MyDict()\nneg = MyDict()\nfeatures = set()\ntotals = [0, 0]\ndelchars = ''.join(c for c in map(chr, range(128)) if not c.isalnum())\n\nCDATA_FILE = \"countdata.pickle\"\nFDATA_FILE = \"reduceddata.pickle\"\n\n\n\n\n\n\n\n\n\n\n\n\n\nif __name__ == '__main__':\n train()\n feature_selection_trials()\n # test_pang_lee()\n # classify_demo(open(\"pos_example\").read())\n # classify_demo(open(\"neg_example\").read())\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class MyDict(dict):", "metadata": "root.MyDict", "header": "['module', '___EOS___']", "index": 9 }, { "content": " def __getitem__(self, key):\n if key in self:\n return self.get(key)\n return 0", "metadata": "root.MyDict.__getitem__", "header": "['class', 'MyDict', '(', 'dict', ')', ':', '___EOS___']", "index": 10 }, { "content": "def negate_sequence(text):\n \"\"\"\n Detects negations and transforms negated words into \"not_\" form.\n \"\"\"\n negation = False\n delims = \"?.,!:;\"\n result = []\n words = text.split()\n prev = None\n pprev = None\n for word in words:\n # stripped = word.strip(delchars)\n stripped = word.strip(delims).lower()\n negated = \"not_\" + stripped if negation else stripped\n result.append(negated)\n if prev:\n bigram = prev + \" \" + negated\n result.append(bigram)\n if pprev:\n trigram = pprev + \" \" + bigram\n result.append(trigram)\n pprev = prev\n prev = negated\n\n if any(neg in word for neg in [\"not\", \"n't\", \"no\"]):\n negation = not negation\n\n if any(c in word for c in delims):\n negation = False\n\n return result", "metadata": "root.negate_sequence", "header": "['module', '___EOS___']", "index": 25 }, { "content": "def train():\n global pos, neg, totals\n retrain = False\n \n # Load counts if they already exist.\n if not retrain and os.path.isfile(CDATA_FILE):\n pos, neg, totals = cPickle.load(open(CDATA_FILE))\n return\n\n limit = 12500\n for file in os.listdir(\"./aclImdb/train/pos\")[:limit]:\n for word in set(negate_sequence(open(\"./aclImdb/train/pos/\" + file).read())):\n pos[word] += 1\n neg['not_' + word] += 1\n for file in os.listdir(\"./aclImdb/train/neg\")[:limit]:\n for word in set(negate_sequence(open(\"./aclImdb/train/neg/\" + file).read())):\n neg[word] += 1\n pos['not_' + word] += 1\n \n prune_features()\n\n totals[0] = sum(pos.values())\n totals[1] = sum(neg.values())\n \n countdata = (pos, neg, totals)\n cPickle.dump(countdata, open(CDATA_FILE, 'w'))", "metadata": "root.train", "header": "['module', '___EOS___']", "index": 58 }, { "content": "def classify(text):\n words = set(word for word in negate_sequence(text) if word in features)\n if (len(words) == 0): return True\n # Probability that word occurs in pos documents\n pos_prob = sum(log((pos[word] + 1) / (2 * totals[0])) for word in words)\n neg_prob = sum(log((neg[word] + 1) / (2 * totals[1])) for word in words)\n return pos_prob > neg_prob", "metadata": "root.classify", "header": "['module', '___EOS___']", "index": 85 }, { "content": "def classify2(text):\n \"\"\"\n For classification from pretrained data\n \"\"\"\n words = set(word for word in negate_sequence(text) if word in pos or word in neg)\n if (len(words) == 0): return True\n # Probability that word occurs in pos documents\n pos_prob = sum(log((pos[word] + 1) / (2 * totals[0])) for word in words)\n neg_prob = sum(log((neg[word] + 1) / (2 * totals[1])) for word in words)\n return pos_prob > neg_prob", "metadata": "root.classify2", "header": "['module', '___EOS___']", "index": 93 }, { "content": "def classify_demo(text):\n words = set(word for word in negate_sequence(text) if word in pos or word in neg)\n if (len(words) == 0): \n print \"No features to compare on\"\n return True\n\n pprob, nprob = 0, 0\n for word in words:\n pp = log((pos[word] + 1) / (2 * totals[0]))\n np = log((neg[word] + 1) / (2 * totals[1]))\n print \"%15s %.9f %.9f\" % (word, exp(pp), exp(np))\n pprob += pp\n nprob += np\n\n print (\"Positive\" if pprob > nprob else \"Negative\"), \"log-diff = %.9f\" % abs(pprob - nprob)", "metadata": "root.classify_demo", "header": "['module', '___EOS___']", "index": 104 }, { "content": "def MI(word):\n \"\"\"\n Compute the weighted mutual information of a term.\n \"\"\"\n T = totals[0] + totals[1]\n W = pos[word] + neg[word]\n I = 0\n if W==0:\n return 0\n if neg[word] > 0:\n # doesn't occur in -ve\n I += (totals[1] - neg[word]) / T * log ((totals[1] - neg[word]) * T / (T - W) / totals[1])\n # occurs in -ve\n I += neg[word] / T * log (neg[word] * T / W / totals[1])\n if pos[word] > 0:\n # doesn't occur in +ve\n I += (totals[0] - pos[word]) / T * log ((totals[0] - pos[word]) * T / (T - W) / totals[0])\n # occurs in +ve\n I += pos[word] / T * log (pos[word] * T / W / totals[0])\n return I", "metadata": "root.MI", "header": "['module', '___EOS___']", "index": 120 }, { "content": "def get_relevant_features():\n pos_dump = MyDict({k: pos[k] for k in pos if k in features})\n neg_dump = MyDict({k: neg[k] for k in neg if k in features})\n totals_dump = [sum(pos_dump.values()), sum(neg_dump.values())]\n return (pos_dump, neg_dump, totals_dump)", "metadata": "root.get_relevant_features", "header": "['module', '___EOS___']", "index": 141 }, { "content": "def prune_features():\n \"\"\"\n Remove features that appear only once.\n \"\"\"\n global pos, neg\n for k in pos.keys():\n if pos[k] <= 1 and neg[k] <= 1:\n del pos[k]\n\n for k in neg.keys():\n if neg[k] <= 1 and pos[k] <= 1:\n del neg[k]", "metadata": "root.prune_features", "header": "['module', '___EOS___']", "index": 147 }, { "content": "def feature_selection_trials():\n \"\"\"\n Select top k features. Vary k and plot data\n \"\"\"\n global pos, neg, totals, features\n retrain = True\n\n if not retrain and os.path.isfile(FDATA_FILE):\n pos, neg, totals = cPickle.load(open(FDATA_FILE))\n return\n\n words = list(set(pos.keys() + neg.keys()))\n print \"Total no of features:\", len(words)\n words.sort(key=lambda w: -MI(w))\n num_features, accuracy = [], []\n bestk = 0\n limit = 500\n path = \"./aclImdb/test/\"\n step = 500\n start = 20000\n best_accuracy = 0.0\n for w in words[:start]:\n features.add(w)\n for k in xrange(start, 40000, step):\n for w in words[k:k+step]:\n features.add(w)\n correct = 0\n size = 0\n\n for file in os.listdir(path + \"pos\")[:limit]:\n correct += classify(open(path + \"pos/\" + file).read()) == True\n size += 1\n\n for file in os.listdir(path + \"neg\")[:limit]:\n correct += classify(open(path + \"neg/\" + file).read()) == False\n size += 1\n\n num_features.append(k+step)\n accuracy.append(correct / size)\n if (correct / size) > best_accuracy:\n bestk = k\n print k+step, correct / size\n\n features = set(words[:bestk])\n cPickle.dump(get_relevant_features(), open(FDATA_FILE, 'w'))\n\n pylab.plot(num_features, accuracy)\n pylab.show()", "metadata": "root.feature_selection_trials", "header": "['module', '___EOS___']", "index": 160 }, { "content": "def test_pang_lee():\n \"\"\"\n Tests the Pang Lee dataset\n \"\"\"\n total, correct = 0, 0\n for fname in os.listdir(\"txt_sentoken/pos\"):\n correct += int(classify2(open(\"txt_sentoken/pos/\" + fname).read()) == True)\n total += 1\n for fname in os.listdir(\"txt_sentoken/neg\"):\n correct += int(classify2(open(\"txt_sentoken/neg/\" + fname).read()) == False)\n total += 1\n print \"accuracy: %f\" % (correct / total)", "metadata": "root.test_pang_lee", "header": "['module', '___EOS___']", "index": 209 } ]	[ { "span": "from operator import mul", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 24 }, { "span": "from collections import Counter", "start_line": 3, "start_column": 0, 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Unused import	openstack/bandit/examples/xml_lxml.py	[ { "content": "import lxml.etree\nimport lxml\nfrom lxml import etree\nfrom defusedxml.lxml import fromstring\nfrom defuxedxml import lxml as potatoe\n\nxmlString = \"<note>\\n<to>Tove</to>\\n<from>Jani</from>\\n<heading>Reminder</heading>\\n<body>Don't forget me this weekend!</body>\\n</note>\"\nroot = lxml.etree.fromstring(xmlString)\nroot = fromstring(xmlString)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "from lxml import etree", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 22 }, { "span": "from defuxedxml import lxml as potatoe", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 38 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "import_", "lxml_", "._", "etree_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "lxml_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "lxml_", "import_", "etree_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "defu", "sed", "xml_", "._", "lxml_", "import_", "fromstring_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "defu", "xed", "xml_", "import_", "lxml_", "as_", "potato", "e_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "xml", "String_", "=_", "\"<", "note", ">\\\\", "n", "<", "to", ">", "To", "ve", "</", "to", ">\\\\", "n", "<", "from", ">", "Jan", "i", "</", "from", ">\\\\", "n", "<", "heading", ">", "Remi", "nder", "</", "heading", ">\\\\", "n", "<", "body", ">", "Don", "'", "t", " ", "forget", " ", "me", " ", "this", " ", "week", "end", "!<", "/", "body", ">\\\\", "n", "</", "note", ">\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "root_", "=_", "lxml_", "._", "etree_", "._", "fromstring_", "(_", "xml", "String_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "root_", "=_", "fromstring_", "(_", "xml", "String_", ")_" ]	[ 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused local variable	networkdynamics/zenlib/src/zen/io/gml.py	[ { "content": "def build_graph(graph_tree, weight_fxn):\n\n\t# What kind of graph is being built?\n\tis_bipartite = bool('bipartite' in graph_tree and graph_tree['bipartite'])\n\tis_directed = bool('directed' in graph_tree and graph_tree['directed'])\n\n\tif is_bipartite:\n\t\tG = BipartiteGraph()\n\n\telif is_directed:\n\t\tG = DiGraph()\n\n\telse:\n\t\tG = Graph()\n\n\t# Build the nodes\n\tif 'node' in graph_tree:\n\n\t\t# get the list of nodes\n\t\tnodes = graph_tree['node']\n\n\t\t# ensure the node-list is a list (needed if there's only one node)\n\t\tif not isinstance(nodes, list):\n\t\t\tnodes = [ nodes ]\n\n\t\t# Build each node and add to the graph\n\t\tfor node in nodes:\t\n\n\t\t\t# Does the node have an id?\n\t\t\thas_id = True\n\t\t\thas_valid_id = True\n\t\t\tif 'id' not in node:\n\t\t\t\thas_id = False\n\t\t\t\thas_valid_id = False\n\n\t\t\t# We can only use positive integer node ids as graph idx\n\t\t\t# If that's not the case, treat it like any other attribute\n\t\t\telif not isinstance(node['id'], int) or node['id'] < 0:\n\t\t\t\thas_valid_id = False\n\n\t\t\t# Got a valid node id\n\t\t\tnode_idx = node['id']\n\n\t\t\t# For bipartite graphs determine which node set this belongs to \n\t\t\tif is_bipartite:\n\t\t\t\tis_in_U = node['isInU']\n\n\t\t\t# collect and verify all the node properties\n\t\t\tstandard_keys = set(['id', 'name', 'zenData'])\n\t\t\tnode_data = {}\n\t\t\tnode_obj = None\n\t\t\tzen_data = None\n\n\t\t\tfor key, val in node.items():\n\n\t\t\t\tif key == 'name':\n\t\t\t\t\tnode_obj = val\n\n\t\t\t\t# give preference to 'name' as source of node_obj\n\t\t\t\telif key == 'label' and node_obj is None: \t\n\t\t\t\t\tnode_obj = val\n\n\t\t\t\telif key == 'zenData':\n\t\t\t\t\tzen_data = val\n\t\t\t\t\n\t\t\t\t# node_data is dict of all other attributes\n\t\t\t\telse:\t\n\t\t\t\t\tnode_data[key] = val \t\n\n\t\t\t# _set_ to node_data else _append_\n\t\t\tif zen_data is not None:\n\t\t\t\tif len(node_data) == 0:\n\t\t\t\t\tnode_data = zen_data\n\t\t\t\telse:\n\t\t\t\t\tnode_data['zenData'] = zen_data\n\n\t\t\telif len(node_data) == 0:\n\t\t\t\tnode_data = None\n\n\t\t\t# make sure that the node object is hashable otherwise put it\n\t\t\tif not isinstance(node_obj, basestring) and node_obj is not None:\n\n\t\t\t\tif not isinstance(node_obj, Hashable):\\\n\n\t\t\t\t\tif not isinstance(node_obj, Iterable):\n\t\t\t\t\t\tnode_obj = None\n\n\t\t\t\t\telse:\n\t\t\t\t\t\tnode_obj = tuple(node_obj)\n\n\n\t\t\t# For bipartite graph, this insertion method does not guarantee \n\t\t\t# that indices will be unchanged after a read-write cycle\n\t\t\tif is_bipartite:\n\t\t\t\tG.add_node_by_class(is_in_U, node_obj, node_data)\n\n\t\t\telif has_id and has_valid_id:\n\t\t\t\tif is_directed:\n\t\t\t\t\tG.add_node_x(node_idx, G.edge_list_capacity,\n\t\t\t\t\t\tG.edge_list_capacity, node_obj,node_data)\n\n\t\t\t\telse:\n\t\t\t\t\tG.add_node_x(node_idx, G.edge_list_capacity, node_obj, \n\t\t\t\t\t\tnode_data)\n\n\t\t\telse:\n\t\t\t\tif G.is_directed:\n\t\t\t\t\tG.add_node(nobj=node_obj, data=node_data)\n\n\t\t\t\telse:\n\t\t\t\t\tG.add_node(nobj=node_obj, data=node_data)\n\n\t# add edges\n\tif 'edge' in graph_tree:\n\n\t\t# ensure edge list is a list (needed if there is only one edge)\n\t\tedges = graph_tree['edge']\n\t\tif not isinstance(edges, list):\n\t\t\tedges = [ edges ]\n\n\t\t# iterate over the edges, add each one to the graph\n\t\tfor edge in edges:\n\n\t\t\t# make sure source and target are specified\n\t\t\tsource = None\n\t\t\ttarget = None\n\t\t\tif 'source' not in edge:\n\t\t\t\traise ZenException('Edge is missing the source attribute '\\\n\t\t\t\t\t'(edge = %s)' % str(edge))\n\n\t\t\tif 'target' not in edge:\n\t\t\t\traise ZenException('Edge is missing the target attribute '\\\n\t\t\t\t\t'(edge = %s)' % str(edge))\n\n\t\t\tweight = 1\n\t\t\tedge_idx = None\n\t\t\tzen_data = None\n\t\t\tedge_data = {}\n\n\t\t\tfor key, val in edge.items():\n\n\t\t\t\tif key == 'id':\n\t\t\t\t\tedge_idx = val\n\t\t\t\t\tif type(val) != int:\n\t\t\t\t\t\traise ZenException('Edge id attribute must be a '\\\n\t\t\t\t\t\t\t'positive integer (edge = %s)' % str(edge))\n\n\t\t\t\telif key == 'source':\n\t\t\t\t\tsource = val\n\t\t\t\t\tif type(val) != int or val < 0:\n\t\t\t\t\t\traise ZenException('Edge source attribute must be a '\\\n\t\t\t\t\t\t\t'positive integer (edge = %s)' % str(edge))\n\n\t\t\t\telif key == 'target':\n\t\t\t\t\ttarget = val\n\t\t\t\t\tif type(val) != int or val < 0:\n\t\t\t\t\t\traise ZenException('Edge target attribute must be a '\\\n\t\t\t\t\t\t\t'positive integer (edge = %s)' % str(edge))\n\n\t\t\t\telif key == 'weight':\n\t\t\t\t\tweight = float(val)\n\n\t\t\t\telif key == 'zenData':\n\t\t\t\t\tzen_data = val\n\n\t\t\t\t# edge_data is dict of all other attributes\n\t\t\t\telse: \n\t\t\t\t\tedge_data[key] = val \t\n\n\t\t\t# give precedence to a weight-getting function if provided\n\t\t\tif weight_fxn != None:\n\t\t\t\tweight = weight_fxn(edge)\n\n\t\t\t# if zenData is only other attribute aside from those handled above \n\t\t\t# _set_ to edge_data else _append_\n\t\t\tif zen_data is not None:\n\t\t\t\tif len(edge_data) == 0:\n\t\t\t\t\tedge_data = zen_data\n\t\t\t\telse:\n\t\t\t\t\tedge_data['zenData'] = zen_data\n\n\t\t\telif len(edge_data) == 0:\n\t\t\t\tedge_data = None;\n\n\t\t\tif edge_idx != None:\n\t\t\t\tG.add_edge_x(edge_idx,source,target,edge_data,weight)\n\t\t\telse:\n\t\t\t\tG.add_edge_(source,target,edge_data,weight)\n\n\treturn G", "metadata": "root.build_graph", "header": "['module', '___EOS___']", "index": 313 } ]	[ { "span": "standard_keys ", "start_line": 361, "start_column": 3, "end_line": 361, "end_column": 16 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "build", "\\u", "graph_", "(_", "graph", "\\u", "tree_", 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Module is imported with 'import' and 'import from'	gmr/tinman/tinman/session.py	[ { "content": "\"\"\"\nTinman session classes for the management of session data\n\n\"\"\"\nfrom tornado import gen\nimport logging\nimport os\nfrom os import path\nimport tempfile\nimport time\nimport uuid\n\nfrom tinman import config\nfrom tinman import exceptions\nfrom tinman import mapping\n\nLOGGER = logging.getLogger(__name__)\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "import os", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 9 } ]	[]	1	true	[ "[CLS]_", "Module_", "is_", "imported_", "with_", "'", "import", "'_", "and_", "'", "import", " ", "from", "'_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\"\"\"", "\\", "10", ";", "Tin", "man", " ", "session", " ", "classe", "s", " ", "for", " ", "the", " ", "manage", "ment", " ", "of", " ", "session", " ", "data", "\\", "10", ";", "\\", "10", ";\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "tornado_", "import_", "gen_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "logging_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "os_", "import_", "path_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "tempfile_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "time_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "uuid_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "tin", "man_", "import_", "config_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "tin", "man_", "import_", "exceptions_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "tin", "man_", "import_", "mapping_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "LOGGER_", "=_", "logging_", "._", "get", "Logger_", "(_", "\\u\\u", "name\\u\\u_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Imprecise assert	Knewton/pettingzoo-python/pettingzoo/tests/test_discovery.py	[ { "content": "\tdef test_load_config_with_callback(self):\n\t\tself.touched = False\n\t\tself.cbpath = None\n\t\tself.cbconfig = None\n\t\tevent = threading.Event()\n\t\tdef callback(path, config):\n\t\t\tself.touched = True\n\t\t\tself.cbpath = path\n\t\t\tself.cbconfig = config\n\t\t\tevent.set()\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', self.sample, '127.0.0.1')\n\t\tddc = pettingzoo.discovery.DistributedDiscovery(self.connection)\n\t\tconfig = ddc.load_config('mysql', 'reports', callback=callback)\n\t\tsample2 = {\n\t\t\t'header': {\n\t\t\t\t'service_class': 'mysql', 'metadata': {'version': 1.0}\n\t\t\t},\n\t\t\t'username': 'reports',\n\t\t\t'host': 'notlocalhost',\n\t\t\t'port': 3306,\n\t\t\t'password': 'reports',\n\t\t\t'database': 'reports',\n\t\t\t'encoding': 'utf8'\n\t\t}\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', sample2, '127.0.0.2')\n\t\tevent.wait(0.25)\n\t\tself.assertTrue(self.touched)\n\t\tself.assertEqual(self.cbpath, '/test_discovery/mysql/reports')\n\t\tconfig = self.cbconfig\n\t\tself.assertTrue(config['host'] in ['localhost', 'notlocalhost'])\n\t\tmismatch_keys = [\n\t\t\tkey for key in self.sample\n\t\t\t\tif not key in config or self.sample[key] != config[key]]\n\t\tfor key in mismatch_keys:\n\t\t\tself.assertTrue(key in ['host', 'header'])", "metadata": "root.DistributedDiscoveryTests.test_load_config_with_callback", "header": "['class', 'DistributedDiscoveryTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 137 }, { "content": "\tdef test_load_config_with_multiple_entries(self):\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', self.sample, '127.0.0.1')\n\t\tsample2 = {\n\t\t\t'header': {\n\t\t\t\t'service_class': 'mysql', 'metadata': {'version': 1.0}\n\t\t\t},\n\t\t\t'username': 'reports',\n\t\t\t'host': 'notlocalhost',\n\t\t\t'port': 3306,\n\t\t\t'password': 'reports',\n\t\t\t'database': 'reports',\n\t\t\t'encoding': 'utf8'\n\t\t}\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', sample2, '127.0.0.2')\n\t\tddc = pettingzoo.discovery.DistributedDiscovery(self.connection)\n\t\tconfig = ddc.load_config('mysql', 'reports')\n\t\tmismatch_keys = [\n\t\t\tkey for key in self.sample\n\t\t\t\tif not key in config or self.sample[key] != config[key]]\n\t\tfor key in mismatch_keys:\n\t\t\tself.assertTrue(key in ['host', 'header'])", "metadata": "root.DistributedDiscoveryTests.test_load_config_with_multiple_entries", "header": "['class', 'DistributedDiscoveryTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 175 }, { "content": "\tdef test_config_file_list_fallback_dc(self):\n\t\tddc = pettingzoo.discovery.DistributedDiscovery(self.connection)\n\t\tconfig = ddc.load_config('mysql', 'list')\n\t\tself.assertEquals(config, self.sample)\n\t\tconfig = ddc.load_config('mysql', 'mlist')\n\t\tself.assertTrue(config in [self.sample, self.sample2])", "metadata": "root.FileFallbackTests.test_config_file_list_fallback_dc", "header": "['class', 'FileFallbackTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 333 } ]	[ { "span": "self.assertTrue(config['host'] in ['localhost', 'notlocalhost'])", "start_line": 168, "start_column": 2, "end_line": 168, "end_column": 66 }, { "span": "self.assertTrue(key in ['host', 'header'])", "start_line": 173, "start_column": 3, "end_line": 173, "end_column": 45 }, { "span": "self.assertTrue(key in ['host', 'header'])", "start_line": 197, "start_column": 3, "end_line": 197, "end_column": 45 }, { "span": "self.assertTrue(config in [self.sample, self.sample2])", "start_line": 338, "start_column": 2, "end_line": 338, 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Redundant comparison	Tanganelli/CoAPthon/coapthon/messages/message.py	[ { "content": " @block1.setter\n def block1(self, value):\n \"\"\"\n Set the Block1 option.\n\n :param value: the Block1 value\n \"\"\"\n option = Option()\n option.number = defines.OptionRegistry.BLOCK1.number\n num, m, size = value\n if size > 512:\n szx = 6\n elif 256 < size <= 512:\n szx = 5\n elif 128 < size <= 256:\n szx = 4\n elif 64 < size <= 128:\n szx = 3\n elif 32 < size <= 64:\n szx = 2\n elif 16 < size <= 32:\n szx = 1\n else:\n szx = 0\n\n value = (num << 4)\n value \|= (m << 3)\n value \|= szx\n\n option.value = value\n self.add_option(option)", "metadata": "root.Message.block1", "header": "['class', 'Message', '(', 'object', ')', ':', '___EOS___']", "index": 500 }, { "content": " @block2.setter\n def block2(self, value):\n option = Option()\n option.number = defines.OptionRegistry.BLOCK2.number\n num, m, size = value\n if size > 512:\n szx = 6\n elif 256 < size <= 512:\n szx = 5\n elif 128 < size <= 256:\n szx = 4\n elif 64 < size <= 128:\n szx = 3\n elif 32 < size <= 64:\n szx = 2\n elif 16 < size <= 32:\n szx = 1\n else:\n szx = 0\n\n value = (num << 4)\n value \|= (m << 3)\n value \|= szx\n\n option.value = value\n self.add_option(option)", "metadata": "root.Message.block2", "header": "['class', 'Message', '(', 'object', ')', ':', '___EOS___']", "index": 548 } ]	[ { "span": "256 < size <= 512:", "start_line": 512, "start_column": 13, "end_line": 512, "end_column": 30 }, { "span": "256 < size <= 512:", "start_line": 555, "start_column": 13, "end_line": 555, "end_column": 30 } ]	[ { "span": "size > 512:", "start_line": 510, "start_column": 11, "end_line": 510, "end_column": 21 }, { "span": "size > 512:", "start_line": 553, "start_column": 11, "end_line": 553, "end_column": 21 } ]	1	true	[ "[CLS]_", "Redu", "ndan", "t_", "comparison_", "[SEP]_", "class_", "Message_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "@_", 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Suspicious unused loop iteration variable	sahana/eden/modules/tests/smoke/broken_links.py	[ { "content": " def report_timings_summary(self,\n summary,\n summary_file_name = None,\n mean_threshold = 1):\n \"\"\"\n This will extract the details from the sheet and optionally save\n them to a summary file\n\n summary: the summary details returned from the spreadsheet (read_timings_sheet)\n summary_file_name: name of the file to record the summary details (if required)\n mean_threshold: The minimum number of values required to include\n the mean in the regression calculations\n \"\"\"\n import numpy\n import datetime\n good_values = []\n other_values = []\n total_values = []\n for date in summary[\"date\"]:\n good_values.append([])\n other_values.append([])\n total_values.append([])\n for (url,results) in summary.items():\n if url == \"date\":\n continue\n else:\n cnt = 0\n for (duration, broken) in results:\n if duration != \"\":\n total_values[cnt].append(duration)\n if broken:\n other_values[cnt].append(duration)\n else:\n good_values[cnt].append(duration)\n cnt += 1\n # get the number of days each entry is after the first date\n # and calculate the average, if the average is NAN then ignore both\n date_summary = []\n gv_mean = []\n gv_std = []\n gv_date = []\n cnt = 0\n start = datetime.datetime.strptime(summary[\"date\"][0],\"%Y-%m-%d\")\n for list in good_values:\n if len(list) > mean_threshold:\n mean = numpy.mean(list)\n std = numpy.std(list)\n if not numpy.isnan(mean):\n this_date = datetime.datetime.strptime(summary[\"date\"][cnt],\"%Y-%m-%d\")\n date_summary.append((this_date - start).days)\n gv_mean.append(mean)\n gv_std.append(std)\n gv_date.append(summary[\"date\"][cnt])\n cnt += 1\n # calculate the regression line\n if len(gv_mean) > 2:\n (m,b) = numpy.polyfit(date_summary, gv_mean, 1)\n else:\n m = b = 0\n\n if summary_file_name != None:\n book = self.write_timings_sheet(summary)\n sheet = book.add_sheet(\"summary\")\n row = 0\n for date in 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Except block handles 'BaseException'	django-erp/django-erp/djangoerp/core/views.py	[ { "content": " def get_success_url(self):\n try:\n return self.request.GET.get('next', self.success_url or clean_http_referer(self.request))\n except:\n return super(SetSuccessUrlMixin, self).get_success_url()", "metadata": "root.SetSuccessUrlMixin.get_success_url", "header": "['class', 'SetSuccessUrlMixin', '(', 'object', ')', ':', '___EOS___']", "index": 45 } ]	[ { "span": "except:", "start_line": 48, "start_column": 8, "end_line": 48, "end_column": 15 } ]	[]	1	true	[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "class_", "Set", "Success", "Ur", "l", "Mixin_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "get", "\\u", "success", "\\u", "url_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "self_", "._", "request_", "._", "GET_", "._", "get_", "(_", "'", "next", "'_", ",_", "self_", "._", "success", "\\u", "url_", "or_", "clean", "\\u", "http", "\\u", "referer_", "(_", "self_", "._", "request_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "super_", "(_", "Set", "Success", "Ur", "l", "Mixin_", ",_", "self_", ")_", "._", "get", "\\u", "success", "\\u", "url_", "(_", ")_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused local variable	diefenbach/django-lfs/lfs/marketing/tests.py	[ { "content": " def test_topseller_3(self):\n \"\"\"Tests general topseller with explicitly assigned products which\n are also in calculated topsellers.\n \"\"\"\n ts = lfs.marketing.utils.get_topseller(2)\n\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)\n\n # Explicit topseller P4, which is already a topseller\n t = Topseller.objects.create(product=self.p4, position=1)\n\n # P4 should only displayed once\n ts = lfs.marketing.utils.get_topseller(2)\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)", "metadata": "root.TopsellerUtilsTestCase.test_topseller_3", "header": "['class', 'TopsellerUtilsTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 170 }, { "content": " def test_topseller_for_category_3(self):\n \"\"\"Tests the top seller for specific categories. With explicitly\n selected products and ca\n \"\"\"\n # Tests the top level category\n ts = lfs.marketing.utils.get_topseller_for_category(self.c1, limit=2)\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)\n\n # Explicit topseller P4 for c1, which is already a topseller\n t = Topseller.objects.create(product=self.p4, position=1)\n\n # Tests the top level category\n ts = lfs.marketing.utils.get_topseller_for_category(self.c1, limit=2)\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)\n\n # Tests the direct categories\n ts = lfs.marketing.utils.get_topseller_for_category(self.c12, limit=2)\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)", "metadata": "root.TopsellerUtilsTestCase.test_topseller_for_category_3", "header": "['class', 'TopsellerUtilsTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 268 } ]	[ { "span": "t ", "start_line": 182, "start_column": 8, "end_line": 182, "end_column": 9 }, { "span": "t ", "start_line": 280, "start_column": 8, "end_line": 280, "end_column": 9 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "class_", "Top", "seller", "Ut", "il", "s", "Test", "Case_", "(_", "Test", "Case_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "tops", "elle", "r", "\\u", "3_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "Test", "s", " ", "genera", "l", " ", "tops", "elle", "r", " ", "with", " ", "explicit", "ly", " ", "assign", "ed", " ", "products", " ", "whi", "ch", "\\", "10", ";", " ", " ", " ", " ", "are", " ", "als", "o", " ", "in", " ", "calculated", " ", "tops", "elle", "rs", ".", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "ts_", "=_", "lf", "s_", "._", "market", "ing_", "._", "utils_", "._", "get", 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" ", "selecte", "d", " ", "products", " ", "and", " ", "ca", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", " ", "Test", "s", " ", "the", " ", "top", " ", "level", " ", "category_", "\\u\\u\\uNL\\u\\u\\u_", "ts_", "=_", "lf", "s_", "._", "market", "ing_", "._", "utils_", "._", "get", "\\u", "tops", "elle", "r", "\\u", "for", "\\u", "category_", "(_", "self_", "._", "c1_", ",_", "limit_", "=_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "len_", "(_", "ts_", ")_", ",_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "ts_", "[_", "0_", "]_", ",_", "self_", "._", "p4_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "ts_", "[_", "1_", "]_", ",_", "self_", "._", "p3_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Exp", "licit", " ", "tops", "elle", "r", " ", "P4", " ", "for", " ", "c1", ",", " ", "whi", "ch", " ", "is", " ", "alr", "ead", "y", " ", "a", " ", "tops", "elle", "r_", "\\u\\u\\uNL\\u\\u\\u_", "t_", "=_", "Top", "seller", "_", "._", "objects_", "._", "create_", "(_", "product_", "=_", "self_", "._", "p4_", ",_", "position_", "=_", "1_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Test", "s", " ", "the", " ", "top", " ", "level", " ", "category_", "\\u\\u\\uNL\\u\\u\\u_", "ts_", "=_", "lf", "s_", "._", "market", "ing_", "._", "utils_", "._", "get", "\\u", "tops", "elle", "r", "\\u", "for", "\\u", "category_", "(_", "self_", "._", "c1_", ",_", "limit_", "=_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "len_", "(_", "ts_", ")_", ",_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "ts_", "[_", "0_", "]_", ",_", "self_", "._", "p4_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "ts_", "[_", "1_", "]_", ",_", "self_", "._", "p3_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Test", "s", " ", "the", " ", "direct", " ", "categories_", "\\u\\u\\uNL\\u\\u\\u_", "ts_", "=_", "lf", "s_", "._", "market", "ing_", "._", "utils_", "._", "get", "\\u", "tops", "elle", "r", "\\u", "for", "\\u", "category_", "(_", "self_", "._", "c1", "2_", ",_", "limit_", "=_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "len_", "(_", "ts_", ")_", ",_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "ts_", "[_", "0_", "]_", ",_", "self_", "._", "p4_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "Equal_", "(_", "ts_", "[_", "1_", "]_", ",_", "self_", "._", "p3_", ")_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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Imprecise assert	myusuf3/delorean/tests/delorean_tests.py	[ { "content": " def test_lt(self):\n dt1 = self.do\n dt2 = delorean.Delorean()\n self.assertTrue(dt1 < dt2)", "metadata": "root.DeloreanTests.test_lt", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 611 }, { "content": " def test_gt(self):\n dt1 = self.do\n dt2 = delorean.Delorean()\n self.assertTrue(dt2 > dt1)", "metadata": "root.DeloreanTests.test_gt", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 616 }, { "content": " def test_ge(self):\n dt = datetime.utcnow()\n dt1 = delorean.Delorean(dt, timezone=\"UTC\")\n dt2 = delorean.Delorean(dt, timezone=\"UTC\")\n dt3 = self.do\n self.assertTrue(dt2 >= dt1)\n self.assertTrue(dt1 >= dt3)", "metadata": "root.DeloreanTests.test_ge", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 621 }, { "content": " def test_le(self):\n dt = datetime.utcnow()\n dt1 = delorean.Delorean(dt, timezone=\"UTC\")\n dt2 = delorean.Delorean(dt, timezone=\"UTC\")\n dt3 = self.do\n self.assertTrue(dt2 <= dt1)\n self.assertTrue(dt3 <= dt2)", "metadata": "root.DeloreanTests.test_le", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 629 }, { "content": " def test_stops_bymonth(self):\n \"\"\"Test if create stops, checks bymonth, bymonthday, count\n and start parameters work properly\n \"\"\"\n days = list(delorean.interface.stops(\n delorean.MONTHLY,\n bymonth=(1, 4, 7, 10),\n bymonthday=15,\n count=4,\n start=datetime(datetime.now().year, 1, 1))\n )\n year = datetime.now().year\n day = 15\n dt1 = datetime(year, 1, day)\n dt4 = datetime(year, 4, day)\n dt7 = datetime(year, 7, day)\n dt10 = datetime(year, 10, day)\n\n self.assertTrue(len(days) == 4)\n dl1 = delorean.Delorean(datetime=dt1, timezone='UTC')\n self.assertEqual(days[0], dl1)\n\n dl4 = delorean.Delorean(datetime=dt4, timezone='UTC')\n self.assertEqual(days[1], dl4)\n\n dl7 = delorean.Delorean(datetime=dt7, timezone='UTC')\n self.assertEqual(days[2], dl7)\n\n dl10 = delorean.Delorean(datetime=dt10, timezone='UTC')\n self.assertEqual(days[3], dl10)", "metadata": "root.DeloreanTests.test_stops_bymonth", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 721 } ]	[ { "span": "self.assertTrue(dt1 < dt2)", "start_line": 614, "start_column": 8, "end_line": 614, "end_column": 34 }, { "span": "self.assertTrue(dt2 > dt1)", "start_line": 619, "start_column": 8, "end_line": 619, "end_column": 34 }, { "span": "self.assertTrue(dt2 >= dt1)", "start_line": 626, "start_column": 8, "end_line": 626, "end_column": 35 }, { "span": "self.assertTrue(dt1 >= dt3)", "start_line": 627, "start_column": 8, "end_line": 627, "end_column": 35 }, { "span": "self.assertTrue(dt2 <= dt1)", "start_line": 634, "start_column": 8, "end_line": 634, 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Unused import	mattupstate/flask-security/flask_security/decorators.py	[ { "content": "# -- coding: utf-8 --\n\"\"\"\n flask_security.decorators\n ~~~~~~~~~~~~~~~~~~~~~~~~~\n\n Flask-Security decorators module\n\n :copyright: (c) 2012 by Matt Wright.\n :license: MIT, see LICENSE for more details.\n\"\"\"\n\nfrom collections import namedtuple\nfrom functools import wraps\n\nfrom flask import (abort, current_app, Response, request,\n url_for, redirect, _request_ctx_stack)\nfrom flask_login import current_user, login_required # pragma: no flakes\nfrom flask_principal import RoleNeed, Permission, Identity, identity_changed\nfrom werkzeug.local import LocalProxy\nfrom werkzeug.routing import BuildError\n\nfrom . import utils\n\n\n# Convenient references\n_security = LocalProxy(lambda: current_app.extensions['security'])\n\n\n_default_unauthorized_html = \"\"\"\n <h1>Unauthorized</h1>\n <p>The server could not verify that you are authorized to access the URL\n requested. You either supplied the wrong credentials (e.g. a bad password),\n or your browser doesn't understand how to supply the credentials required.</p>\n \"\"\"\n\nBasicAuth = namedtuple('BasicAuth', 'username, password')\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _get_unauthorized_response(text=None, headers=None):\n text = text or _default_unauthorized_html\n headers = headers or {}\n return Response(text, 401, headers)", "metadata": "root._get_unauthorized_response", "header": "['module', '___EOS___']", "index": 38 }, { "content": "def _get_unauthorized_view():\n view = utils.get_url(utils.config_value('UNAUTHORIZED_VIEW'))\n if view:\n if callable(view):\n view = view()\n else:\n try:\n view = url_for(view)\n except BuildError:\n view = None\n utils.do_flash(utils.get_message('UNAUTHORIZED'))\n return redirect(view or request.referrer or '/')\n abort(403)", "metadata": "root._get_unauthorized_view", "header": "['module', '___EOS___']", "index": 44 }, { "content": "def _check_token():\n header_key = _security.token_authentication_header\n args_key = _security.token_authentication_key\n header_token = request.headers.get(header_key, None)\n token = request.args.get(args_key, header_token)\n if request.get_json(silent=True):\n if not isinstance(request.json, list):\n token = request.json.get(args_key, token)\n\n user = _security.login_manager.token_callback(token)\n\n if user and user.is_authenticated:\n app = current_app._get_current_object()\n _request_ctx_stack.top.user = user\n identity_changed.send(app, identity=Identity(user.id))\n return True\n\n return False", "metadata": "root._check_token", "header": "['module', '___EOS___']", "index": 59 }, { "content": "def _check_http_auth():\n auth = request.authorization or BasicAuth(username=None, password=None)\n user = _security.datastore.find_user(email=auth.username)\n\n if user and utils.verify_and_update_password(auth.password, user):\n _security.datastore.commit()\n app = current_app._get_current_object()\n _request_ctx_stack.top.user = user\n identity_changed.send(app, identity=Identity(user.id))\n return True\n\n return False", "metadata": "root._check_http_auth", "header": "['module', '___EOS___']", "index": 79 }, { "content": "def http_auth_required(realm):\n \"\"\"Decorator that protects endpoints using Basic HTTP authentication.\n The username should be set to the user's email address.\n\n :param realm: optional realm name\"\"\"\n\n def decorator(fn):\n @wraps(fn)\n def wrapper(args, *kwargs):\n if _check_http_auth():\n return fn(args, *kwargs)\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n r = _security.default_http_auth_realm if callable(realm) else realm\n h = {'WWW-Authenticate': 'Basic realm=\"%s\"' % r}\n return _get_unauthorized_response(headers=h)\n return wrapper\n\n if callable(realm):\n return decorator(realm)\n return decorator", "metadata": "root.http_auth_required", "header": "['module', '___EOS___']", "index": 93 }, { "content": "def auth_token_required(fn):\n \"\"\"Decorator that protects endpoints using token authentication. The token\n should be added to the request by the client by using a query string\n variable with a name equal to the configuration value of\n `SECURITY_TOKEN_AUTHENTICATION_KEY` or in a request header named that of\n the configuration value of `SECURITY_TOKEN_AUTHENTICATION_HEADER`\n \"\"\"\n\n @wraps(fn)\n def decorated(args, *kwargs):\n if _check_token():\n return fn(args, *kwargs)\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_response()\n return decorated", "metadata": "root.auth_token_required", "header": "['module', '___EOS___']", "index": 117 }, { "content": "def auth_required(auth_methods):\n \"\"\"\n Decorator that protects enpoints through multiple mechanisms\n Example::\n\n @app.route('/dashboard')\n @auth_required('token', 'session')\n def dashboard():\n return 'Dashboard'\n\n :param auth_methods: Specified mechanisms.\n \"\"\"\n login_mechanisms = {\n 'token': lambda: _check_token(),\n 'basic': lambda: _check_http_auth(),\n 'session': lambda: current_user.is_authenticated\n }\n\n def wrapper(fn):\n @wraps(fn)\n def decorated_view(args, kwargs):\n h = {}\n mechanisms = [(method, login_mechanisms.get(method)) for method in auth_methods]\n for method, mechanism in mechanisms:\n if mechanism and mechanism():\n return fn(args, *kwargs)\n elif method == 'basic':\n r = _security.default_http_auth_realm\n h['WWW-Authenticate'] = 'Basic realm=\"%s\"' % r\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_response(headers=h)\n return decorated_view\n return wrapper", "metadata": "root.auth_required", "header": "['module', '___EOS___']", "index": 136 }, { "content": "def roles_required(roles):\n \"\"\"Decorator which specifies that a user must have all the specified roles.\n Example::\n\n @app.route('/dashboard')\n @roles_required('admin', 'editor')\n def dashboard():\n return 'Dashboard'\n\n The current user must have both the `admin` role and `editor` role in order\n to view the page.\n\n :param args: The required roles.\n \"\"\"\n def wrapper(fn):\n @wraps(fn)\n def decorated_view(args, kwargs):\n perms = [Permission(RoleNeed(role)) for role in roles]\n for perm in perms:\n if not perm.can():\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_view()\n return fn(args, *kwargs)\n return decorated_view\n return wrapper", "metadata": "root.roles_required", "header": "['module', '___EOS___']", "index": 173 }, { "content": "def roles_accepted(roles):\n \"\"\"Decorator which specifies that a user must have at least one of the\n specified roles. Example::\n\n @app.route('/create_post')\n @roles_accepted('editor', 'author')\n def create_post():\n return 'Create Post'\n\n The current user must have either the `editor` role or `author` role in\n order to view the page.\n\n :param args: The possible roles.\n \"\"\"\n def wrapper(fn):\n @wraps(fn)\n def decorated_view(args, kwargs):\n perm = Permission([RoleNeed(role) for role in roles])\n if perm.can():\n return fn(args, kwargs)\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_view()\n return decorated_view\n return wrapper", "metadata": "root.roles_accepted", "header": "['module', '___EOS___']", "index": 202 }, { "content": "def anonymous_user_required(f):\n @wraps(f)\n def wrapper(args, *kwargs):\n if current_user.is_authenticated:\n return redirect(utils.get_url(_security.post_login_view))\n return f(args, **kwargs)\n return wrapper", "metadata": "root.anonymous_user_required", "header": "['module', '___EOS___']", "index": 230 } ]	[ { "span": "from flask_login import current_user, login_required ", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 52 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "--", " ", "codi", "ng", ":", " ", "utf", "-", "8", " ", "--", "_", "\\u\\u\\uNL\\u\\u\\u_", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "fla", "sk", "\\u", "security", ".", "decorat", "ors", "\\", "10", ";", " ", " ", " ", " ", "~~~~~~~~~~~", "~~~~~~~~~~~", "~~~", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", "Fla", "sk", "-", "Secur", "it", "y", " ", "decorat", "ors", " ", "module", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", ":", "copyr", "ight", ":", " ", "(", "c", ")", " ", "2012", " ", "by", " ", "Matt", " ", "Wr", "ight", ".", "\\", "10", ";", " ", " ", " ", " ", ":", "license", ":", " ", "MIT", ",", " ", "see", " ", "LICENSE", " ", "for", " ", "more", " ", "deta", "il", "s", ".", 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Module is imported with 'import' and 'import from'	statsmodels/statsmodels/statsmodels/compat/python.py	[ { "content": "\"\"\"\nCompatibility tools for differences between Python 2 and 3\n\"\"\"\nimport functools\nimport itertools\nimport sys\nimport urllib\n\nPY3 = (sys.version_info[0] >= 3)\nPY3_2 = sys.version_info[:2] == (3, 2)\n\nif PY3:\n import builtins\n from io import StringIO, BytesIO\n\n cStringIO = StringIO\n import pickle as cPickle\n pickle = cPickle\n import urllib.request\n import urllib.parse\n from urllib.request import HTTPError, urlretrieve, URLError\n import io\n bytes = bytes\n str = str\n asunicode = lambda x, _ : str(x)\n\n\n\n\n\n\n strchar = 'U'\n\n # have to explicitly put builtins into the namespace\n range = range\n map = map\n zip = zip\n filter = filter\n reduce = functools.reduce\n long = int\n unichr = chr\n zip_longest = itertools.zip_longest\n\n # list-producing versions of the major Python iterating functions\n\n\n\n\n urlopen = urllib.request.urlopen\n urljoin = urllib.parse.urljoin\n urlretrieve = urllib.request.urlretrieve\n urlencode = urllib.parse.urlencode\n string_types = str\n input = input\n\nelse:\n import __builtin__ as builtins\n # not writeable when instantiated with string, doesn't handle unicode well\n from cStringIO import StringIO as cStringIO\n # always writeable\n from StringIO import StringIO\n\n BytesIO = StringIO\n import cPickle\n pickle = cPickle\n import urllib2\n import urlparse\n\n bytes = str\n str = str\n asbytes = str\n asstr = str\n asstr2 = str\n strchar = 'S'\n\n\n\n\n # import iterator versions of these functions\n range = xrange\n zip = itertools.izip\n filter = itertools.ifilter\n map = itertools.imap\n reduce = reduce\n long = long\n unichr = unichr\n zip_longest = itertools.izip_longest\n\n # Python 2-builtin ranges produce lists\n lrange = builtins.range\n lzip = builtins.zip\n lmap = builtins.map\n lfilter = builtins.filter\n\n urlopen = urllib2.urlopen\n urljoin = 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Unused import	django-leonardo/django-leonardo/leonardo/module/leonardo_auth/forms.py	[ { "content": "from __future__ import absolute_import\n\nfrom django.contrib.auth import authenticate, login\nfrom django.contrib.auth.models import User\nfrom django.contrib.auth.tokens import default_token_generator\nfrom django.contrib.sites.models import Site\nfrom django.core import exceptions\nfrom django.core.urlresolvers import reverse\nfrom django.db.models import Q\nfrom django.utils.translation import ugettext_lazy as _\nfrom django.utils.translation import pgettext, ugettext\nfrom horizon import forms, messages\nfrom leonardo.forms import SelfHandlingForm, Layout, InlineCheckboxes\nfrom horizon.utils import validators\n\n\n\n\n\n\n\"\"\"\nclass ChangePasswordForm(UserForm):\n\n oldpassword = PasswordField(label=_(\"Current Password\"))\n password1 = SetPasswordField(label=_(\"New Password\"))\n password2 = PasswordField(label=_(\"New Password (again)\"))\n\n def clean_oldpassword(self):\n if not self.user.check_password(self.cleaned_data.get(\"oldpassword\")):\n raise forms.ValidationError(_(\"Please type your current\"\n \" password.\"))\n return self.cleaned_data[\"oldpassword\"]\n\n def clean_password2(self):\n if (\"password1\" in self.cleaned_data\n and \"password2\" in self.cleaned_data):\n if (self.cleaned_data[\"password1\"]\n != self.cleaned_data[\"password2\"]):\n raise forms.ValidationError(_(\"You must type the same password\"\n \" each time.\"))\n return self.cleaned_data[\"password2\"]\n\n def save(self):\n get_adapter().set_password(self.user, self.cleaned_data[\"password1\"])\n\n\nclass SetPasswordForm(UserForm):\n\n password1 = SetPasswordField(label=_(\"Password\"))\n password2 = PasswordField(label=_(\"Password (again)\"))\n\n def clean_password2(self):\n if (\"password1\" in self.cleaned_data\n and \"password2\" in self.cleaned_data):\n if (self.cleaned_data[\"password1\"]\n != self.cleaned_data[\"password2\"]):\n raise forms.ValidationError(_(\"You must type the same password\"\n \" each time.\"))\n return self.cleaned_data[\"password2\"]\n\n def save(self):\n get_adapter().set_password(self.user, self.cleaned_data[\"password1\"])\n\n\nclass ResetPasswordForm(forms.Form):\n\n email = forms.EmailField(\n label=_(\"E-mail\"),\n required=True,\n widget=forms.TextInput(attrs={\"type\": \"email\", \"size\": \"30\"}))\n\n def clean_email(self):\n email = self.cleaned_data[\"email\"]\n email = get_adapter().clean_email(email)\n self.users = get_user_model().objects \\\n .filter(Q(email__iexact=email)\n \| Q(emailaddress__email__iexact=email)).distinct()\n if not self.users.exists():\n raise forms.ValidationError(_(\"The e-mail address is not assigned\"\n \" to any user account\"))\n return self.cleaned_data[\"email\"]\n\n def save(self, request, *kwargs):\n\n email = self.cleaned_data[\"email\"]\n token_generator = kwargs.get(\"token_generator\",\n default_token_generator)\n\n for user in self.users:\n\n temp_key = token_generator.make_token(user)\n\n # save it to the password reset model\n # password_reset = PasswordReset(user=user, temp_key=temp_key)\n # password_reset.save()\n\n current_site = Site.objects.get_current()\n\n # send the password reset email\n path = reverse(\"account_reset_password_from_key\",\n kwargs=dict(uidb36=user_pk_to_url_str(user),\n key=temp_key))\n url = build_absolute_uri(request, path,\n protocol=app_settings.DEFAULT_HTTP_PROTOCOL)\n context = {\"site\": current_site,\n \"user\": user,\n \"password_reset_url\": url}\n if app_settings.AUTHENTICATION_METHOD \\\n != AuthenticationMethod.EMAIL:\n context['username'] = user_username(user)\n get_adapter().send_mail('account/email/password_reset_key',\n email,\n context)\n return self.cleaned_data[\"email\"]\n\n\nclass ResetPasswordKeyForm(forms.Form):\n\n password1 = SetPasswordField(label=_(\"New Password\"))\n password2 = PasswordField(label=_(\"New Password (again)\"))\n\n def __init__(self, args, *kwargs):\n self.user = kwargs.pop(\"user\", None)\n self.temp_key = kwargs.pop(\"temp_key\", None)\n super(ResetPasswordKeyForm, self).__init__(args, *kwargs)\n\n # FIXME: Inspecting other fields -> should be put in def clean(self) ?\n def clean_password2(self):\n if (\"password1\" in self.cleaned_data\n and \"password2\" in self.cleaned_data):\n if (self.cleaned_data[\"password1\"]\n != self.cleaned_data[\"password2\"]):\n raise forms.ValidationError(_(\"You must type the same\"\n \" password each time.\"))\n return self.cleaned_data[\"password2\"]\n\n def save(self):\n get_adapter().set_password(self.user, self.cleaned_data[\"password1\"])\n\"\"\"\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class LoginForm(SelfHandlingForm):\n\n username = forms.CharField(label=_(\"Username\"),\n max_length=255,\n widget=forms.TextInput(\n attrs={'placeholder':\n _('Username'),\n 'autofocus': 'autofocus'}))\n\n password = forms.CharField(label=_(\"Password\"),\n widget=forms.PasswordInput(render_value=False))\n remember = forms.BooleanField(label=_(\"Remember Me\"),\n required=False)\n\n", "metadata": "root.LoginForm", "header": "['module', '___EOS___']", "index": 16 }, { "content": " def __init__(self, args, *kwargs):\n super(LoginForm, self).__init__(args, kwargs)\n self.helper.layout = Layout(\n 'username', 'password', 'remember',\n )", "metadata": "root.LoginForm.__init__", "header": "['class', 'LoginForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 30 }, { "content": " def handle(self, request, data):\n\n user = authenticate(data)\n if user is not None:\n if user.is_active:\n login(request, user)\n\n messages.success(request, \"Login success.\")\n return True\n messages.error(request, \"Login failed.\")\n return False", "metadata": "root.LoginForm.handle", "header": "['class', 'LoginForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 36 }, { "content": "class SignupForm(SelfHandlingForm):\n\n username = forms.CharField(label=_(\"Username\"),\n max_length=255,\n widget=forms.TextInput(\n attrs={'placeholder':\n _('Username'),\n 'autofocus': 'autofocus'}))\n email = forms.EmailField(widget=forms.TextInput(\n attrs={'type': 'email',\n 'placeholder': _('E-mail address')}))\n\n password = forms.RegexField(\n label=_(\"Password\"),\n widget=forms.PasswordInput(render_value=False),\n regex=validators.password_validator(),\n error_messages={'invalid': validators.password_validator_msg()})\n confirm_password = forms.CharField(\n label=_(\"Confirm Password\"),\n widget=forms.PasswordInput(render_value=False))\n no_autocomplete = True\n\n", "metadata": "root.SignupForm", "header": "['module', '___EOS___']", "index": 49 }, { "content": " def clean(self):\n '''Check to make sure password fields match.'''\n data = super(forms.Form, self).clean()\n\n # basic check for now\n if 'username' in data:\n if User.objects.filter(\n username=data['username'],\n email=data['email']).exists():\n raise validators.ValidationError(\n _('Username or email exists in database.'))\n\n if 'password' in data:\n if data['password'] != data.get('confirm_password', None):\n raise validators.ValidationError(_('Passwords do not match.'))\n else:\n data.pop('confirm_password')\n return data", "metadata": "root.SignupForm.clean", "header": "['class', 'SignupForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 71 }, { "content": " def handle(self, request, data):\n\n try:\n user = User.objects.create_user(**data)\n messages.success(\n request,\n _(\"User account {} was successfuly created.\".format(user)))\n\n except Exception as e:\n raise e\n else:\n data.pop('email')\n return LoginForm().handle(request, data)\n\n messages.error(request, _(\"Create Account failed.\"))\n return False", "metadata": "root.SignupForm.handle", "header": "['class', 'SignupForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 90 } ]	[ { "span": "from django.contrib.auth.tokens import default_token_generator", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 62 }, { "span": "from django.contrib.sites.models import Site", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 44 }, { "span": "from django.core import exceptions", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 34 }, { "span": "from django.core.urlresolvers import reverse", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 44 }, { "span": "from django.db.models import Q", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 30 }, { "span": "from django.utils.translation import pgettext, ugettext", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 55 }, { "span": "from leonardo.forms import SelfHandlingForm, Layout, InlineCheckboxes", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 69 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "from_", 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Variable defined multiple times	rizar/attention-lvcsr/libs/Theano/theano/tensor/nnet/tests/test_neighbours.py	[ { "content": " def test_infer_shape(self):\n shape = (100, 40, 6, 3)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 1),\n mode='valid')],\n [images],\n Images2Neibs\n )\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 3),\n mode='valid')],\n [images],\n Images2Neibs\n )\n shape = (100, 40, 5, 4)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 1),\n mode='ignore_borders')],\n [images],\n Images2Neibs\n )\n shape = (100, 40, 5, 3)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 3),\n mode='ignore_borders')],\n [images],\n Images2Neibs\n )\n\n shape = (100, 40, 6, 7)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 2),\n mode='ignore_borders')],\n [images],\n Images2Neibs\n )\n shape = (100, 40, 5, 10)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(3, 3),\n mode='wrap_centered')],\n [images],\n Images2Neibs\n )", "metadata": "root.T_Images2Neibs.test_infer_shape", "header": "['class', 'T_Images2Neibs', '(', 'unittest_tools', '.', 'InferShapeTester', ')', ':', '___EOS___']", "index": 372 } ]	[ { "span": "f ", "start_line": 376, "start_column": 8, "end_line": 376, "end_column": 9 }, { "span": "f ", "start_line": 383, "start_column": 8, "end_line": 383, "end_column": 9 }, { "span": "f ", "start_line": 393, "start_column": 8, "end_line": 393, "end_column": 9 }, { "span": "f ", "start_line": 403, "start_column": 8, "end_line": 403, "end_column": 9 }, { "span": "f ", "start_line": 414, 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Redundant comparison	mattharrison/rst2odp/odplib/imagescale.py	[ { "content": "def adjust_crop(dst_w, dst_h, img_w, img_h):\n \"\"\"\n given a x and y of dest, determine the ratio and return\n an (x,y,w,h) for a cropped image (note x or y could be neg).\n >>> adjust_crop(4,3,5,5)\n (0, -0.5, 4.0, 4.0)\n >>> adjust_crop(8,6,5,5)\n (0, -1.0, 8.0, 8.0)\n >>> adjust_crop(4,3,5,2)\n (-1.75, 0, 7.5, 3.0)\n >>> adjust_crop(8,6,5,2)\n (-3.5, 0, 15.0, 6.0)\n \"\"\"\n dst_w = float(dst_w)\n dst_h = float(dst_h)\n img_w = float(img_w)\n img_h = float(img_h)\n\n dst_ratio = float(dst_w)/dst_h\n\n img_ratio = float(img_w)/img_h\n\n if dst_ratio > img_ratio:\n scale = dst_w/img_w\n x = 0\n w = dst_w\n h = img_h * scale\n y = dst_h/2 - h/2\n\n elif dst_ratio <= img_ratio:\n scale = dst_h/img_h\n y = 0\n w = img_w * scale\n h = img_h * scale\n x = dst_w/2 - w/2\n\n return x,y,w,h", "metadata": "root.adjust_crop", "header": "['module', '___EOS___']", "index": 22 } ]	[ { "span": "dst_ratio <= 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Unused import	jfsantos/ift6266h14/old/exp_next_sample.py	[ { "content": "from pylearn2_timit.timitnext import TIMITnext\nimport itertools\nimport numpy as np\nfrom pylearn2.datasets import DenseDesignMatrix\nfrom pylearn2.models.mlp import \nfrom pylearn2.costs.mlp.dropout import Dropout\nfrom pylearn2.termination_criteria import EpochCounter\nfrom pylearn2.training_algorithms.sgd import SGD\nfrom pylearn2.training_algorithms import learning_rule\nfrom pylearn2.train import Train\nfrom pylearn2.train_extensions import best_params\nfrom pylearn2.costs.cost import SumOfCosts\nfrom pylearn2.costs.mlp import \nimport cPickle as pickle\nimport theano\nfrom sys import argv\n\nframe_len = 160\noverlap = frame_len-1\n\n#timit_root = argv[1]\n\ntrain = TIMITnext(\"train\", frame_len, overlap, start=0, stop=100)\nvalid = TIMITnext(\"valid\", frame_len, overlap, start=0, stop=10)\ntest = TIMITnext(\"test\", frame_len, overlap, start=0, stop=50)\n\n# Model used to predict the next sample. This model is never trained,\n# as it uses parameters predicted by the next model.\n\ni0 = VectorSpace(frame_len)\ns0 = Sigmoid(layer_name='h0', dim=500, sparse_init=150)\ns1 = Sigmoid(layer_name='h1', dim=250, sparse_init=75)\ns2 = Sigmoid(layer_name='h2', dim=100, sparse_init=15)\nl0 = Linear(layer_name='y', dim=1, sparse_init=1)\n\nmdl = MLP(layers=[s0, s1, s2, l0], nvis=frame_len, input_space=i0)\n\ntrainer = SGD(batch_size=128, learning_rate = .01, init_momentum = .5, monitoring_dataset = {'train' : train, 'valid': valid, 'test' : test}, termination_criterion = EpochCounter(max_epochs=20), cost = SumOfCosts([Default(), L1WeightDecay([0.01,0.01,0.01,0.01])]))\n \nwatcher = best_params.MonitorBasedSaveBest(\n channel_name='test_objective',\n save_path='nextsample.pkl')\n \nexperiment = Train(dataset=train,\n model=mdl,\n algorithm=trainer, extensions=[watcher])\n\nexperiment.main_loop()\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "import itertools", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 16 }, { "span": "import numpy as np", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 18 }, { "span": "from pylearn2.datasets import DenseDesignMatrix", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 47 }, { "span": "from pylearn2.costs.mlp.dropout import Dropout", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 46 }, { "span": "from pylearn2.training_algorithms import learning_rule", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 54 }, { "span": "import cPickle as pickle", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 24 }, { "span": "import theano", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 13 }, { "span": "from sys import argv", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 20 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", 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Unused local variable	rvanlaar/easy-transifex/src/transifex/transifex/resources/formats/xliff.py	[ { "content": " def _parse(self, is_source, lang_rules):\n \"\"\"\n Parses XLIFF file and exports all entries as GenericTranslations.\n \"\"\"\n resource = self.resource\n\n context = \"\"\n content = self.content.encode('utf-8')\n try:\n self.doc = xml.dom.minidom.parseString(content)\n root = self.doc.documentElement\n\n if root.tagName != \"xliff\":\n raise XliffParseError(_(\"Root element is not 'xliff'\"))\n for node in root.childNodes:\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"file\":\n self.parse_tag_file(node, is_source)\n except Exception, e:\n XliffParseError(e.message)\n\n return self.doc.toxml()", "metadata": "root.XliffHandler._parse", "header": "['class', 'XliffHandler', '(', 'Handler', ')', ':', '___EOS___']", "index": 169 }, { "content": " def parse_tag_group(self, group_node, is_source=False, context=None):\n if not context:\n context = []\n if group_node.attributes['restype'].value == \"x-gettext-plurals\":\n pluralized = True\n nplural_file = 0\n nplural = self.language.get_pluralrules_numbers()\n trans_unit_nodes = []\n for node in group_node.childNodes:\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"trans-unit\":\n nplural_file += 1\n trans_unit_nodes.append(node)\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"context-group\":\n context.extend(self.parse_tag_context_group(node, is_source))\n source = \"\"\n source_node = trans_unit_nodes[nplural.index(1)].getElementsByTagName(\"source\")[0]\n if len(source_node.childNodes)>1:\n source = self._getText(source_node.childNodes)\n else:\n source = source_node.firstChild.data\n if is_source:\n if nplural_file != 2:\n raise self.HandlerParseError(_(\"Your source file has more than two plurals which is not supported.\"))\n for n, node in enumerate(trans_unit_nodes):\n if n == 0:\n rule = 1\n else:\n rule = 5\n self.parse_tag_trans_unit(node, is_source, [i for i in context], source_string = source, rule=rule)\n else:\n if nplural_file != len(nplural):\n raise self.HandlerParseError(_(\"Your translation file does not have the supported number of plurals.\"))\n\n for n, node in enumerate(trans_unit_nodes):\n self.parse_tag_trans_unit(node, is_source, [i for i in context], source_string = source, rule=nplural[n])\n return\n\n for node in group_node.childNodes:\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"group\":\n self.parse_tag_group(node, is_source, [i for i in context])\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"trans-unit\":\n self.parse_tag_trans_unit(node, is_source, [i for i in context])\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"context-group\":\n # context-group has to be in XML before occurence of trans-unit, so it\n # is ok to populate context this way\n context.extend(self.parse_tag_context_group(node, is_source))\n # TODO prop-group, note, count-group\n # there is no way to handle bin-unit in transifex", "metadata": "root.XliffHandler.parse_tag_group", "header": "['class', 'XliffHandler', '(', 'Handler', ')', ':', '___EOS___']", "index": 204 } ]	[ { "span": "resource ", "start_line": 173, "start_column": 8, "end_line": 173, "end_column": 16 }, { "span": "context ", "start_line": 175, "start_column": 8, "end_line": 175, "end_column": 15 }, { "span": "pluralized ", "start_line": 208, "start_column": 12, "end_line": 208, "end_column": 22 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "class_", "Xl", "iff", "Handler_", "(_", "Handler_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u", "parse_", "(_", "self_", ",_", "is", "\\u", "source_", ",_", "lang", "\\u", "rules_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "Pars", "es", " ", "XL", "IF", "F", " ", "file", " ", "and", " ", 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"\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "parse", "\\u", "tag", "\\u", "trans", "\\u", "unit_", "(_", "node_", ",_", "is", "\\u", "source_", ",_", "[_", "i_", "for_", "i_", "in_", "context_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "node_", "._", "node", "Type_", "==_", "node_", "._", "ELEMENT", "\\u", "NODE_", "and_", "node_", "._", "local", "Name_", "==_", "\"", "context", "-", "group", "\"_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "#", " ", "context", "-", "group", " ", "has", " ", "to", " ", "be", " ", "in", " ", "XML", " ", "bef", "ore", " ", "occure", "nce", " ", "of", " ", "trans", "-", "unit", ",", " ", "so", " ", "it_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "is", " ", "ok", " ", "to", " ", "populate", " ", "context", " ", "this", " ", "way_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "context_", "._", "extend_", "(_", "self_", "._", "parse", "\\u", "tag", "\\u", "context", "\\u", "group_", 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Constant in conditional expression or statement	kayhayen/Nuitka/tests/optimizations/Conditions.py	[ { "content": "# Copyright 2016, Kay Hayen, mailto:[email protected]\n#\n# Python test originally created or extracted from other peoples work. The\n# parts from me are licensed as below. It is at least Free Software where\n# it's copied from other people. In these cases, that will normally be\n# indicated.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n#\n\nprint(1 if [1,2] else 2)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "[1,2] ", "start_line": 20, "start_column": 11, "end_line": 20, "end_column": 16 } ]	[]	1	true	[ "[CLS]_", "Constant_", "in_", "conditional", "_", "expression_", "or_", "statement_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "Copy", "right", " ", "2016", 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Unused local variable	StevenBlack/hosts/updateHostsFile.py	[ { "content": "def getUpdateURLsFromFile(source):\n pathToUpdateFile = os.path.join(settings[\"datapath\"], source, settings[\"updateurlfilename\"])\n if os.path.exists(pathToUpdateFile):\n updateFile = open(pathToUpdateFile, \"r\")\n retURLs = updateFile.readlines()\n # .strip()\n updateFile.close()\n else:\n retURL = None\n printFailure(\"Warning: Can't find the update file for source \" + source + \"\\n\" +\n \"Make sure that there's a file at \" + pathToUpdateFile)\n return retURLs", "metadata": "root.getUpdateURLsFromFile", "header": "['module', '___EOS___']", "index": 242 }, { "content": "def updateReadmeData():\n extensionsKey = \"base\"\n hostsLocation = \"\"\n if settings[\"extensions\"]:\n extensionsKey = \"-\".join(settings[\"extensions\"])\n\n generationData = {\"location\": os.path.join(settings[\"outputsubfolder\"], \"\"),\n \"entries\": settings[\"numberofrules\"]}\n settings[\"readmedata\"][extensionsKey] = generationData\n with open(settings[\"readmedatafilename\"], \"w\") as f:\n json.dump(settings[\"readmedata\"], f)", "metadata": "root.updateReadmeData", "header": "['module', '___EOS___']", "index": 402 }, { "content": "def moveHostsFileIntoPlace(finalFile):\n if os.name == \"posix\":\n dnsCacheFound = False\n print (\"Moving the file requires administrative privileges. \" +\n \"You might need to enter your password.\")\n if subprocess.call([\"/usr/bin/sudo\", \"cp\", os.path.abspath(finalFile.name), \"/etc/hosts\"]):\n printFailure(\"Moving the file failed.\")\n print (\"Flushing the DNS Cache to utilize new hosts file...\")\n if platform.system() == \"Darwin\":\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"killall\", \"-HUP\", \"mDNSResponder\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n if os.path.isfile(\"/etc/rc.d/init.d/nscd\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/etc/rc.d/init.d/nscd\", \"restart\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting nscd succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/NetworkManager.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"NetworkManager.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting NetworkManager succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/wicd.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"wicd.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting wicd succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/dnsmasq.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"dnsmasq.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting dnsmasq succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/networking.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"networking.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting networking.service succeeded\")\n if not dnsCacheFound:\n printFailure(\"Unable to determine DNS management tool.\")\n elif os.name == \"nt\":\n print (\"Automatically moving the hosts file in place is not yet supported.\")\n print (\"Please move the generated file to %SystemRoot%\\system32\\drivers\\etc\\hosts\")", "metadata": "root.moveHostsFileIntoPlace", "header": "['module', '___EOS___']", "index": 414 } ]	[ { "span": "retURL ", "start_line": 250, "start_column": 8, "end_line": 250, "end_column": 14 }, { "span": "hostsLocation ", "start_line": 404, "start_column": 4, "end_line": 404, "end_column": 17 }, { "span": "dnsCacheFound ", "start_line": 423, "start_column": 12, "end_line": 423, "end_column": 25 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "get", "Update", "URL", "s", "Fro", "m", "File_", "(_", "source_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "path", "To", "Update", "File_", "=_", "os_", "._", "path_", "._", "join_", "(_", "settings_", "[_", "\"", "datapath", "\"_", "]_", ",_", "source_", ",_", "settings_", "[_", "\"", "update", "urlf", "ilen", "ame", "\"_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "os_", "._", "path_", "._", "exists_", "(_", "path", "To", "Update", "File_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "update", "File_", "=_", "open_", "(_", 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"\"", "nt", "\"_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "print_", "(_", "\"", "Automat", "ical", "ly", " ", "movin", "g", " ", "the", " ", "host", "s", " ", "file", " ", "in", " ", "place", " ", "is", " ", "not", " ", "ye", "t", " ", "support", "ed", ".\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "print_", "(_", "\"", "Ple", "ase", " ", "move", " ", "the", " ", "generat", "ed", " ", "file", " ", "to", " ", "%", "System", "Roo", "t", "%\\", "\\", "system", "32", "\\\\", "driver", "s", "\\\\", "etc", "\\\\", "host", "s", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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Unnecessary pass	django-extensions/django-extensions/django_extensions/management/commands/runserver_plus.py	[ { "content": " @signalcommand\n def handle(self, addrport='', args, *options):\n import django\n\n startup_messages = options.get('startup_messages', 'reload')\n if startup_messages == \"reload\":\n self.show_startup_messages = os.environ.get('RUNSERVER_PLUS_SHOW_MESSAGES')\n elif startup_messages == \"once\":\n self.show_startup_messages = not os.environ.get('RUNSERVER_PLUS_SHOW_MESSAGES')\n elif startup_messages == \"never\":\n self.show_startup_messages = False\n else:\n self.show_startup_messages = True\n\n os.environ['RUNSERVER_PLUS_SHOW_MESSAGES'] = '1'\n\n # Do not use default ending='\\n', because StreamHandler() takes care of it\n if hasattr(self.stderr, 'ending'):\n self.stderr.ending = None\n\n setup_logger(logger, self.stderr, filename=options.get('output_file', None)) # , fmt=\"[%(name)s] %(message)s\")\n logredirect = RedirectHandler(__name__)\n\n # Redirect werkzeug log items\n werklogger = logging.getLogger('werkzeug')\n werklogger.setLevel(logging.INFO)\n werklogger.addHandler(logredirect)\n werklogger.propagate = False\n\n if options.get(\"print_sql\", False):\n try:\n # Django 1.7 onwards\n from django.db.backends import utils\n except ImportError:\n # Django 1.6 below\n from django.db.backends import util as utils\n\n try:\n import sqlparse\n except ImportError:\n sqlparse = None # noqa\n\n class PrintQueryWrapper(utils.CursorDebugWrapper):\n def execute(self, sql, params=()):\n starttime = time.time()\n try:\n return self.cursor.execute(sql, params)\n finally:\n raw_sql = self.db.ops.last_executed_query(self.cursor, sql, params)\n execution_time = time.time() - starttime\n therest = ' -- [Execution time: %.6fs] [Database: %s]' % (execution_time, self.db.alias)\n if sqlparse:\n logger.info(sqlparse.format(raw_sql, reindent=True) + therest)\n else:\n logger.info(raw_sql + therest)\n\n utils.CursorDebugWrapper = PrintQueryWrapper\n\n try:\n from django.core.servers.basehttp import AdminMediaHandler\n USE_ADMINMEDIAHANDLER = True\n except ImportError:\n USE_ADMINMEDIAHANDLER = False\n\n try:\n from django.core.servers.basehttp import get_internal_wsgi_application as WSGIHandler\n except ImportError:\n from django.core.handlers.wsgi import WSGIHandler # noqa\n\n try:\n from werkzeug import run_simple, DebuggedApplication\n\n # Set colored output\n if settings.DEBUG:\n try:\n set_werkzeug_log_color()\n except: # We are dealing with some internals, anything could go wrong\n if self.show_startup_messages:\n print(\"Wrapping internal werkzeug logger for color highlighting has failed!\")\n pass\n\n except ImportError:\n raise CommandError(\"Werkzeug is required to use runserver_plus. Please visit http://werkzeug.pocoo.org/ or install via pip. (pip install Werkzeug)\")\n\n pdb_option = options.get('pdb', False)\n ipdb_option = options.get('ipdb', False)\n pm = options.get('pm', False)\n try:\n from django_pdb.middleware import PdbMiddleware\n except ImportError:\n if pdb_option or ipdb_option or pm:\n raise CommandError(\"django-pdb is required for --pdb, --ipdb and --pm options. Please visit https://pypi.python.org/pypi/django-pdb or install via pip. (pip install django-pdb)\")\n pm = False\n else:\n # Add pdb middleware if --pdb is specified or if in DEBUG mode\n middleware = 'django_pdb.middleware.PdbMiddleware'\n if (pdb_option or ipdb_option or settings.DEBUG) and middleware not in settings.MIDDLEWARE_CLASSES:\n settings.MIDDLEWARE_CLASSES += (middleware,)\n\n # If --pdb is specified then always break at the start of views.\n # Otherwise break only if a 'pdb' query parameter is set in the url\n if pdb_option:\n PdbMiddleware.always_break = 'pdb'\n elif ipdb_option:\n PdbMiddleware.always_break = 'ipdb'\n\n def postmortem(request, exc_type, exc_value, tb):\n if has_ipdb():\n import ipdb\n p = ipdb\n else:\n import pdb\n p = pdb\n print >>sys.stderr, \"Exception occured: %s, %s\" % (exc_type,\n exc_value)\n p.post_mortem(tb)\n\n # usurp django's handler\n from django.views import debug\n debug.technical_500_response = postmortem if pm else null_technical_500_response\n\n self.use_ipv6 = options.get('use_ipv6')\n if self.use_ipv6 and not socket.has_ipv6:\n raise CommandError('Your Python does not support IPv6.')\n self._raw_ipv6 = False\n if not addrport:\n try:\n addrport = settings.RUNSERVERPLUS_SERVER_ADDRESS_PORT\n except AttributeError:\n pass\n if not addrport:\n self.addr = ''\n self.port = DEFAULT_PORT\n else:\n m = re.match(naiveip_re, addrport)\n if m is None:\n raise CommandError('\"%s\" is not a valid port number '\n 'or address:port pair.' % addrport)\n self.addr, _ipv4, _ipv6, _fqdn, self.port = m.groups()\n if not self.port.isdigit():\n raise CommandError(\"%r is not a valid port number.\" %\n self.port)\n if self.addr:\n if _ipv6:\n self.addr = self.addr[1:-1]\n self.use_ipv6 = True\n self._raw_ipv6 = True\n elif self.use_ipv6 and not _fqdn:\n raise CommandError('\"%s\" is not a valid IPv6 address.'\n % self.addr)\n if not self.addr:\n self.addr = '::1' if self.use_ipv6 else '127.0.0.1'\n\n threaded = options.get('threaded', True)\n use_reloader = options.get('use_reloader', True)\n open_browser = options.get('open_browser', False)\n cert_path = options.get(\"cert_path\")\n quit_command = (sys.platform == 'win32') and 'CTRL-BREAK' or 'CONTROL-C'\n bind_url = \"http://%s:%s/\" % (\n self.addr if not self._raw_ipv6 else '[%s]' % self.addr, self.port)\n extra_files = options.get('extra_files', None) or []\n reloader_interval = options.get('reloader_interval', 1)\n\n def inner_run():\n if self.show_startup_messages:\n print(\"Performing system checks...\\n\")\n if hasattr(self, 'check'):\n self.check(display_num_errors=self.show_startup_messages)\n else:\n self.validate(display_num_errors=self.show_startup_messages)\n if HAS_MIGRATIONS:\n try:\n self.check_migrations()\n except ImproperlyConfigured:\n pass\n if self.show_startup_messages:\n print(\"\\nDjango version %s, using settings %r\" % (django.get_version(), settings.SETTINGS_MODULE))\n print(\"Development server is running at %s\" % (bind_url,))\n print(\"Using the Werkzeug debugger (http://werkzeug.pocoo.org/)\")\n print(\"Quit the server with %s.\" % quit_command)\n path = options.get('admin_media_path', '')\n if not path:\n admin_media_path = os.path.join(django.__path__[0], 'contrib/admin/static/admin')\n if os.path.isdir(admin_media_path):\n path = admin_media_path\n else:\n path = os.path.join(django.__path__[0], 'contrib/admin/media')\n handler = WSGIHandler()\n if USE_ADMINMEDIAHANDLER:\n handler = AdminMediaHandler(handler, path)\n if USE_STATICFILES:\n use_static_handler = options.get('use_static_handler', True)\n insecure_serving = options.get('insecure_serving', False)\n if use_static_handler and (settings.DEBUG or insecure_serving):\n handler = StaticFilesHandler(handler)\n if open_browser:\n import webbrowser\n webbrowser.open(bind_url)\n if cert_path:\n \"\"\"\n OpenSSL is needed for SSL support.\n\n This will make flakes8 throw warning since OpenSSL is not used\n directly, alas, this is the only way to show meaningful error\n messages. See:\n http://lucumr.pocoo.org/2011/9/21/python-import-blackbox/\n for more information on python imports.\n \"\"\"\n try:\n import OpenSSL # NOQA\n except ImportError:\n raise CommandError(\"Python OpenSSL Library is \"\n \"required to use runserver_plus with ssl support. \"\n \"Install via pip (pip install pyOpenSSL).\")\n\n dir_path, cert_file = os.path.split(cert_path)\n if not dir_path:\n dir_path = os.getcwd()\n root, ext = os.path.splitext(cert_file)\n certfile = os.path.join(dir_path, root + \".crt\")\n keyfile = os.path.join(dir_path, root + \".key\")\n try:\n from werkzeug.serving import make_ssl_devcert\n if os.path.exists(certfile) and \\\n os.path.exists(keyfile):\n ssl_context = (certfile, keyfile)\n else: # Create cert, key files ourselves.\n ssl_context = make_ssl_devcert(\n os.path.join(dir_path, root), host='localhost')\n except ImportError:\n if self.show_startup_messages:\n print(\"Werkzeug version is less than 0.9, trying adhoc certificate.\")\n ssl_context = \"adhoc\"\n\n else:\n ssl_context = None\n\n if use_reloader and settings.USE_I18N:\n try:\n from django.utils.autoreload import gen_filenames\n except ImportError:\n pass\n else:\n extra_files.extend(filter(lambda filename: filename.endswith('.mo'), gen_filenames()))\n\n run_simple(\n self.addr,\n int(self.port),\n DebuggedApplication(handler, True),\n use_reloader=use_reloader,\n use_debugger=True,\n extra_files=extra_files,\n reloader_interval=reloader_interval,\n threaded=threaded,\n ssl_context=ssl_context,\n )\n inner_run()", "metadata": "root.Command.handle", "header": "['class', 'Command', '(', 'BaseCommand', ')', ':', '___EOS___']", "index": 95 } ]	[ { "span": "pass", "start_line": 174, "start_column": 20, "end_line": 174, "end_column": 24 } ]	[]	1	true	[ "[CLS]_", "Un", "necessar", "y_", "pass_", "[SEP]_", "class_", "Command_", "(_", "Base", "Command_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", 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Module is imported more than once	amrdraz/kodr/app/brython/www/src/Lib/uuid.py	[ { "content": "r\"\"\"UUID objects (universally unique identifiers) according to RFC 4122.\n\nThis module provides immutable UUID objects (class UUID) and the functions\nuuid1(), uuid3(), uuid4(), uuid5() for generating version 1, 3, 4, and 5\nUUIDs as specified in RFC 4122.\n\nIf all you want is a unique ID, you should probably call uuid1() or uuid4().\nNote that uuid1() may compromise privacy since it creates a UUID containing\nthe computer's network address. uuid4() creates a random UUID.\n\nTypical usage:\n\n >>> import uuid\n\n # make a UUID based on the host ID and current time\n >>> uuid.uuid1() # doctest: +SKIP\n UUID('a8098c1a-f86e-11da-bd1a-00112444be1e')\n\n # make a UUID using an MD5 hash of a namespace UUID and a name\n >>> uuid.uuid3(uuid.NAMESPACE_DNS, 'python.org')\n UUID('6fa459ea-ee8a-3ca4-894e-db77e160355e')\n\n # make a random UUID\n >>> uuid.uuid4() # doctest: +SKIP\n UUID('16fd2706-8baf-433b-82eb-8c7fada847da')\n\n # make a UUID using a SHA-1 hash of a namespace UUID and a name\n >>> uuid.uuid5(uuid.NAMESPACE_DNS, 'python.org')\n UUID('886313e1-3b8a-5372-9b90-0c9aee199e5d')\n\n # make a UUID from a string of hex digits (braces and hyphens ignored)\n >>> x = uuid.UUID('{00010203-0405-0607-0809-0a0b0c0d0e0f}')\n\n # convert a UUID to a string of hex digits in standard form\n >>> str(x)\n '00010203-0405-0607-0809-0a0b0c0d0e0f'\n\n # get the raw 16 bytes of the UUID\n >>> x.bytes\n b'\\x00\\x01\\x02\\x03\\x04\\x05\\x06\\x07\\x08\\t\\n\\x0b\\x0c\\r\\x0e\\x0f'\n\n # make a UUID from a 16-byte string\n >>> uuid.UUID(bytes=x.bytes)\n UUID('00010203-0405-0607-0809-0a0b0c0d0e0f')\n\"\"\"\n\n__author__ = 'Ka-Ping Yee <[email protected]>'\n\nRESERVED_NCS, RFC_4122, RESERVED_MICROSOFT, RESERVED_FUTURE = [\n 'reserved for NCS compatibility', 'specified in RFC 4122',\n 'reserved for Microsoft compatibility', 'reserved for future definition']\n\nint_ = int # The built-in int type\nbytes_ = bytes # The built-in bytes type\n\n\n\n\n\n\n# Thanks to Thomas Heller for ctypes and for his help with its use here.\n\n# If ctypes is available, use it to find system routines for UUID generation.\n# XXX This makes the module non-thread-safe!\n_uuid_generate_random = _uuid_generate_time = _UuidCreate = None\ntry:\n import ctypes, ctypes.util\n\n # The uuid_generate_* routines are provided by libuuid on at least\n # Linux and FreeBSD, and provided by libc on Mac OS X.\n for libname in ['uuid', 'c']:\n try:\n lib = ctypes.CDLL(ctypes.util.find_library(libname))\n except:\n continue\n if hasattr(lib, 'uuid_generate_random'):\n _uuid_generate_random = lib.uuid_generate_random\n if hasattr(lib, 'uuid_generate_time'):\n _uuid_generate_time = lib.uuid_generate_time\n if _uuid_generate_random is not None:\n break # found everything we were looking for\n\n # The uuid_generate_* functions are broken on MacOS X 10.5, as noted\n # in issue #8621 the function generates the same sequence of values\n # in the parent process and all children created using fork (unless\n # those children use exec as well).\n #\n # Assume that the uuid_generate functions are broken from 10.5 onward,\n # the test can be adjusted when a later version is fixed.\n import sys\n if sys.platform == 'darwin':\n import os\n if int(os.uname().release.split('.')[0]) >= 9:\n _uuid_generate_random = _uuid_generate_time = None\n\n # On Windows prior to 2000, UuidCreate gives a UUID containing the\n # hardware address. On Windows 2000 and later, UuidCreate makes a\n # random UUID and UuidCreateSequential gives a UUID containing the\n # hardware address. These routines are provided by the RPC runtime.\n # NOTE: at least on Tim's WinXP Pro SP2 desktop box, while the last\n # 6 bytes returned by UuidCreateSequential are fixed, they don't appear\n # to bear any relationship to the MAC address of any network device\n # on the box.\n try:\n lib = ctypes.windll.rpcrt4\n except:\n lib = None\n _UuidCreate = getattr(lib, 'UuidCreateSequential',\n getattr(lib, 'UuidCreate', None))\nexcept:\n pass\n\n\n\n\n_node = None\n\n\n_last_timestamp = None\n\n\n\n\n\n# The following standard UUIDs are for use with uuid3() or uuid5().\n\nNAMESPACE_DNS = UUID('6ba7b810-9dad-11d1-80b4-00c04fd430c8')\nNAMESPACE_URL = UUID('6ba7b811-9dad-11d1-80b4-00c04fd430c8')\nNAMESPACE_OID = UUID('6ba7b812-9dad-11d1-80b4-00c04fd430c8')\nNAMESPACE_X500 = UUID('6ba7b814-9dad-11d1-80b4-00c04fd430c8')\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _find_mac(command, args, hw_identifiers, get_index):\n import os, shutil\n executable = shutil.which(command)\n if executable is None:\n path = os.pathsep.join(('/sbin', '/usr/sbin'))\n executable = shutil.which(command, path=path)\n if executable is None:\n return None\n\n try:\n # LC_ALL to ensure English output, 2>/dev/null to prevent output on\n # stderr (Note: we don't have an example where the words we search for\n # are actually localized, but in theory some system could do so.)\n cmd = 'LC_ALL=C %s %s 2>/dev/null' % (executable, args)\n with os.popen(cmd) as pipe:\n for line in pipe:\n words = line.lower().split()\n for i in range(len(words)):\n if words[i] in hw_identifiers:\n try:\n return int(\n words[get_index(i)].replace(':', ''), 16)\n except (ValueError, IndexError):\n # Virtual interfaces, such as those provided by\n # VPNs, do not have a colon-delimited MAC address\n # as expected, but a 16-byte HWAddr separated by\n # dashes. These should be ignored in favor of a\n # real MAC address\n pass\n except OSError:\n pass", "metadata": "root._find_mac", "header": "['module', '___EOS___']", "index": 313 }, { "content": "def _ipconfig_getnode():\n \"\"\"Get the hardware address on Windows by running ipconfig.exe.\"\"\"\n import os, re\n dirs = ['', r'c:\\windows\\system32', r'c:\\winnt\\system32']\n try:\n import ctypes\n buffer = ctypes.create_string_buffer(300)\n ctypes.windll.kernel32.GetSystemDirectoryA(buffer, 300)\n dirs.insert(0, buffer.value.decode('mbcs'))\n except:\n pass\n #for dir in dirs:\n #try:\n # pipe = os.popen(os.path.join(dir, 'ipconfig') + ' /all')\n #except OSError:\n # continue\n #else:\n # for line in pipe:\n # value = line.split(':')[-1].strip().lower()\n # if re.match('([0-9a-f][0-9a-f]-){5}[0-9a-f][0-9a-f]', value):\n # return int(value.replace('-', ''), 16)\n #finally:\n # pipe.close()", "metadata": "root._ipconfig_getnode", "header": "['module', '___EOS___']", "index": 369 }, { "content": "def uuid4():\n \"\"\"Generate a random UUID.\"\"\"\n\n # When the system provides a version-4 UUID generator, use it.\n if _uuid_generate_random:\n _buffer = ctypes.create_string_buffer(16)\n _uuid_generate_random(_buffer)\n return UUID(bytes=bytes_(_buffer.raw))\n\n # Otherwise, get randomness from urandom or the 'random' module.\n try:\n import os\n return UUID(bytes=os.urandom(16), version=4)\n except:\n import random\n bytes = bytes_(random.randrange(256) for i in range(16))\n return UUID(bytes=bytes, version=4)", "metadata": "root.uuid4", "header": "['module', '___EOS___']", "index": 563 } ]	[ { "span": "import os, shutil", "start_line": 314, "start_column": 4, "end_line": 314, "end_column": 21 }, { "span": "import os, re", "start_line": 371, "start_column": 4, "end_line": 371, "end_column": 17 }, { "span": "import ctypes", "start_line": 374, "start_column": 8, "end_line": 374, "end_column": 21 }, { "span": "import os", "start_line": 574, "start_column": 8, "end_line": 574, "end_column": 17 } ]	[ { "span": "import ctypes, ctypes.util", "start_line": 428, "start_column": 4, "end_line": 428, "end_column": 30 }, { "span": "import os", "start_line": 453, "start_column": 8, "end_line": 453, "end_column": 17 } ]	1	true	[ "[CLS]_", "Module_", "is_", "imported_", "more_", "than_", "once_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "r", "\"\"\"", "UU", "ID", " ", "object", "s", " ", "(", "universal", "ly", " ", "unique", " ", "identifi", "ers", ")", " ", "according", " ", "to", " ", "RF", "C", " ", "412", "2", ".", "\\", "10", ";", "\\", "10", ";", "Thi", "s", " ", "module", " ", "provide", "s", " ", "immutable", " ", "UU", "ID", " ", "object", "s", " ", "(", "class", " ", "UU", "ID", ")", " ", "and", " ", "the", " ", "function", "s", "\\", "10", ";", "uuid", "1", "()", ",", " ", "uuid", "3", "()", ",", " ", "uuid", "4", "()", ",", " ", "uuid", "5", "()", " ", "for", " ", "generat", "ing", " ", "version", " ", "1", ",", " ", "3", ",", " ", "4", ",", " ", 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Unused local variable	Rediker-Software/doac/doac/contrib/rest_framework/authentication.py	[ { "content": " def authenticate(self, request):\n \"\"\"\n Send the request through the authentication middleware that\n is provided with DOAC and grab the user and token from it.\n \"\"\"\n\n from doac.middleware import AuthenticationMiddleware\n\n try:\n response = AuthenticationMiddleware().process_request(request)\n except:\n raise exceptions.AuthenticationFailed(\"Invalid handler\")\n\n if not hasattr(request, \"user\") or not request.user.is_authenticated():\n return None\n\n if not hasattr(request, \"access_token\"):\n raise exceptions.AuthenticationFailed(\"Access token was not valid\")\n\n return request.user, request.access_token", "metadata": "root.DoacAuthentication.authenticate", "header": "['class', 'DoacAuthentication', '(', 'authentication', '.', 'BaseAuthentication', ')', ':', '___EOS___']", "index": 5 } ]	[ { "span": "response ", "start_line": 14, "start_column": 12, "end_line": 14, "end_column": 20 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "class_", "Do", "ac", "Authentication_", "(_", "authentication_", "._", "Base", "Authentication_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "def_", "authenticate_", "(_", "self_", ",_", "request_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "Sen", "d", " ", "the", " ", "request", " ", "through", " ", "the", " ", "authenticat", "ion", " ", "middle", "ware", " ", "tha", "t", "\\", "10", ";", " ", " ", " ", " ", "is", " ", "provided", " ", "with", " ", "DO", "AC", " ", "and", " ", "gra", "b", " ", "the", " ", "user", " ", "and", " ", "token", " ", "from", " ", "it", ".", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "do", "ac_", "._", "middleware_", "import_", "Auth", "entica", "tion", "Middleware_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "response_", "=_", "Auth", "entica", "tion", "Middleware_", "(_", ")_", "._", "process", "\\u", "request_", "(_", "request_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "raise_", "exceptions_", "._", "Auth", "entica", "tion", "Failed_", "(_", "\"", "Inva", "lid", " ", "handler", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "not_", "hasattr_", "(_", "request_", ",_", "\"", "user", "\"_", ")_", "or_", "not_", "request_", "._", "user_", "._", "is", "\\u", "authenticated_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "not_", "hasattr_", "(_", "request_", ",_", "\"", "access", "\\u", "token", "\"_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "raise_", "exceptions_", "._", "Auth", "entica", "tion", "Failed_", "(_", "\"", "Access", " ", "token", " ", "was", " ", "not", " ", "valid", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "return_", "request_", "._", "user_", ",_", "request_", "._", "access", "\\u", "token_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	carpedm20/LINE/line/api.py	[ { "content": "# -- coding: utf-8 --\n\"\"\"\n line.client\n ~~~~~~~~~~~\n\n LineClient for sending and receiving message from LINE server.\n\n :copyright: (c) 2014 by Taehoon Kim.\n :license: BSD, see LICENSE for more details.\n\"\"\"\nimport rsa\nimport requests\ntry:\n import simplejson as json\nexcept ImportError:\n import json\n\nfrom thrift.transport import TTransport\nfrom thrift.transport import TSocket\nfrom thrift.transport import THttpClient\nfrom thrift.protocol import TCompactProtocol\n\nimport sys\nreload(sys)\nsys.setdefaultencoding(\"utf-8\")\n\n#from curve import CurveThrift\nfrom curve import CurveThrift\nfrom curve.ttypes import TalkException\nfrom curve.ttypes import ToType, ContentType\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class LineAPI(object):\n \"\"\"This class is a wrapper of LINE API\n\n \"\"\"\n LINE_DOMAIN = \"http://gd2.line.naver.jp\"\n\n LINE_HTTP_URL = LINE_DOMAIN + \"/api/v4/TalkService.do\"\n LINE_HTTP_IN_URL = LINE_DOMAIN + \"/P4\"\n LINE_CERTIFICATE_URL = LINE_DOMAIN + \"/Q\"\n LINE_SESSION_LINE_URL = LINE_DOMAIN + \"/authct/v1/keys/line\"\n LINE_SESSION_NAVER_URL = LINE_DOMAIN + \"/authct/v1/keys/naver\"\n \n CERT_FILE = \".line.crt\"\n\n ip = \"127.0.0.1\"\n version = \"5.1.2\"\n com_name = \"\"\n revision = 0\n certificate = \"\"\n\n _headers = {}\n\n\n\n\n \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.LineAPI", "header": "['module', '___EOS___']", "index": 31 }, { "content": " def __init__(self):\n object.__init__(self)\n self._session = requests.session()", "metadata": "root.LineAPI.__init__", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 53 }, { "content": " def ready(self):\n \"\"\"\n After login, make `client` and `client_in` instance\n to communicate with LINE server\n \"\"\"\n raise Exception(\"Code is removed because of the request of LINE corporation\")", "metadata": "root.LineAPI.ready", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 57 }, { "content": " def updateAuthToken(self):\n \"\"\"\n After login, update authToken to avoid expiration of\n authToken. This method skip the PinCode validation step.\n \"\"\"\n if self.certificate:\n self.login()\n self.tokenLogin()\n\n return True\n else:\n self.raise_error(\"You need to login first. There is no valid certificate\")", "metadata": "root.LineAPI.updateAuthToken", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 64 }, { "content": " def tokenLogin(self):\n self.transport = THttpClient.THttpClient(self.LINE_HTTP_URL)\n self.transport.setCustomHeaders(self._headers)\n\n self.protocol = TCompactProtocol.TCompactProtocol(self.transport)\n self._client = CurveThrift.Client(self.protocol)", "metadata": "root.LineAPI.tokenLogin", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 77 }, { "content": " def login(self):\n \"\"\"Login to LINE server.\"\"\"\n if self.provider == CurveThrift.Provider.LINE: # LINE\n j = self._get_json(self.LINE_SESSION_LINE_URL)\n else: # NAVER\n j = self._get_json(self.LINE_SESSION_NAVER_URL)\n\n session_key = j['session_key']\n message = (chr(len(session_key)) + session_key +\n chr(len(self.id)) + self.id +\n chr(len(self.password)) + self.password).encode('utf-8')\n\n keyname, n, e = j['rsa_key'].split(\",\")\n pub_key = rsa.PublicKey(int(n,16), int(e,16))\n crypto = rsa.encrypt(message, pub_key).encode('hex')\n\n self.transport = THttpClient.THttpClient(self.LINE_HTTP_URL)\n self.transport.setCustomHeaders(self._headers)\n\n self.protocol = TCompactProtocol.TCompactProtocol(self.transport)\n self._client = CurveThrift.Client(self.protocol)\n\n try:\n with open(self.CERT_FILE,'r') as f:\n self.certificate = f.read()\n f.close()\n except:\n self.certificate = \"\"\n\n msg = self._client.loginWithIdentityCredentialForCertificate(\n self.id, self.password, keyname, crypto, True, self.ip,\n self.com_name, self.provider, self.certificate)\n\n if msg.type == 1:\n self.certificate = msg.certificate\n self.authToken = self._headers['X-Line-Access'] = msg.authToken\n elif msg.type == 2:\n msg = \"require QR code\"\n self.raise_error(msg)\n elif msg.type == 3:\n self._headers['X-Line-Access'] = msg.verifier\n self._pinCode = msg.pinCode\n\n print \"Enter PinCode '%s' to your mobile phone in 2 minutes\"\\\n % self._pinCode\n\n j = self.get_json(self.LINE_CERTIFICATE_URL)\n self.verifier = j['result']['verifier']\n\n msg = self._client.loginWithVerifierForCertificate(self.verifier)\n if msg.type == 1:\n if msg.certificate is not None:\n with open(self.CERT_FILE,'w') as f:\n f.write(msg.certificate)\n self.certificate = msg.certificate\n if msg.authToken is not None:\n self.authToken = self._headers['X-Line-Access'] = msg.authToken\n return True\n else:\n return False\n else:\n msg = \"Require device confirm\"\n self.raise_error(msg)\n\n #raise Exception(\"Code is removed because of the request of LINE corporation\")\n else:\n self.authToken = self._headers['X-Line-Access'] = msg.authToken\n\n return True", "metadata": "root.LineAPI.login", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 84 }, { "content": " def get_json(self, url):\n \"\"\"Get josn from given url with saved session and headers\"\"\"\n return json.loads(self._session.get(url, headers=self._headers).text)", "metadata": "root.LineAPI.get_json", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 154 }, { "content": " def _getProfile(self):\n \"\"\"Get profile information\n\n :returns: Profile object\n - picturePath\n - displayName\n - phone (base64 encoded?)\n - allowSearchByUserid\n - pictureStatus\n - userid\n - mid # used for unique id for account\n - phoneticName\n - regionCode\n - allowSearchByEmail\n - email\n - statusMessage\n \"\"\"\n return self._client.getProfile()", "metadata": "root.LineAPI._getProfile", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 158 }, { "content": " def _getAllContactIds(self):\n \"\"\"Get all contacts of your LINE account\"\"\"\n return self._client.getAllContactIds()", "metadata": "root.LineAPI._getAllContactIds", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 177 }, { "content": " def _getBlockedContactIds(self):\n \"\"\"Get all blocked contacts of your LINE account\"\"\"\n return self._client.getBlockedContactIds()", "metadata": "root.LineAPI._getBlockedContactIds", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 181 }, { "content": " def _getContacts(self, ids):\n \"\"\"Get contact information list from ids\n\n :returns: List of Contact list\n - status\n - capableVideoCall\n - dispalyName\n - settings\n - pictureStatus\n - capableVoiceCall\n - capableBuddy\n - mid\n - displayNameOverridden\n - relation\n - thumbnailUrl\n - createdTime\n - facoriteTime\n - capableMyhome\n - attributes\n - type\n - phoneticName\n - statusMessage\n \"\"\"\n if type(ids) != list:\n msg = \"argument should be list of contact ids\"\n self.raise_error(msg)\n\n return self._client.getContacts(ids)", "metadata": "root.LineAPI._getContacts", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 185 }, { "content": " def _findAndAddContactsByMid(self, mid, seq=0):\n \"\"\"Find and add contacts by Mid\"\"\"\n return self._client.findAndAddContactsByMid(seq, mid)", "metadata": "root.LineAPI._findAndAddContactsByMid", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 214 }, { "content": " def _findContactByUserid(self, userid):\n \"\"\"Find contacts by Userid\"\"\"\n return self._client.findContactByUserid(userid)", "metadata": "root.LineAPI._findContactByUserid", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 218 }, { "content": " def _findAndAddContactsByUserid(self, userid, seq=0):\n \"\"\"Find and add contacts by Userid\"\"\"\n return self._client.findAndAddContactsByUserid(seq, userid)", "metadata": "root.LineAPI._findAndAddContactsByUserid", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 222 }, { "content": " def _findContactsByPhone(self, phones):\n \"\"\"Find contacts by phone\"\"\"\n return self._client.findContactsByPhone(phones)", "metadata": "root.LineAPI._findContactsByPhone", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 226 }, { "content": " def _findAndAddContactsByPhone(self, phones, seq=0):\n \"\"\"Find and add contacts by phone\"\"\"\n return self._client.findAndAddContactsByPhone(seq, phones)", "metadata": "root.LineAPI._findAndAddContactsByPhone", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 230 }, { "content": " def _findContactsByEmail(self, emails):\n \"\"\"Find contacts by email\"\"\"\n return self._client.findContactsByEmail(emails)", "metadata": "root.LineAPI._findContactsByEmail", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 234 }, { "content": " def _findAndAddContactsByEmail(self, emails, seq=0):\n \"\"\"Find and add contacts by email\"\"\"\n return self._client.findAndAddContactsByEmail(seq, emails)", "metadata": "root.LineAPI._findAndAddContactsByEmail", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 238 }, { "content": " def _createRoom(self, ids, seq=0):\n \"\"\"Create a chat room\"\"\"\n return self._client.createRoom(seq, ids)", "metadata": "root.LineAPI._createRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 242 }, { "content": " def _getRoom(self, id):\n \"\"\"Get a chat room\"\"\"\n return self._client.getRoom(id)", "metadata": "root.LineAPI._getRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 246 }, { "content": " def _inviteIntoRoom(self, roomId, contactIds=[]):\n \"\"\"Invite contacts into room\"\"\"\n return self._client.inviteIntoRoom(0, roomId, contactIds)", "metadata": "root.LineAPI._inviteIntoRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 250 }, { "content": " def _leaveRoom(self, id):\n \"\"\"Leave a chat room\"\"\"\n return self._client.leaveRoom(0, id)", "metadata": "root.LineAPI._leaveRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 254 }, { "content": " def _createGroup(self, name, ids, seq=0):\n \"\"\"Create a group\"\"\"\n return self._client.createGroup(seq, name, ids)", "metadata": "root.LineAPI._createGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 258 }, { "content": " def _getGroups(self, ids):\n \"\"\"Get a list of group with ids\"\"\"\n if type(ids) != list:\n msg = \"argument should be list of group ids\"\n self.raise_error(msg)\n\n return self._client.getGroups(ids)", "metadata": "root.LineAPI._getGroups", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 262 }, { "content": " def _getGroupIdsJoined(self):\n \"\"\"Get group id that you joined\"\"\"\n return self._client.getGroupIdsJoined()", "metadata": "root.LineAPI._getGroupIdsJoined", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 270 }, { "content": " def _getGroupIdsInvited(self):\n \"\"\"Get group id that you invited\"\"\"\n return self._client.getGroupIdsInvited()", "metadata": "root.LineAPI._getGroupIdsInvited", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 274 }, { "content": " def _acceptGroupInvitation(self, groupId, seq=0):\n \"\"\"Accept a group invitation\"\"\"\n return self._client.acceptGroupInvitation(seq, groupId)", "metadata": "root.LineAPI._acceptGroupInvitation", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 278 }, { "content": " def _kickoutFromGroup(self, groupId, contactIds=[], seq=0):\n \"\"\"Kick a group members\"\"\"\n return self._client.kickoutFromGroup(seq, groupId, contactIds)", "metadata": "root.LineAPI._kickoutFromGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 282 }, { "content": " def _cancelGroupInvitation(self, groupId, contactIds=[], seq=0):\n \"\"\"Cancel a group invitation\"\"\"\n return self._client.cancelGroupInvitation(seq, groupId, contactIds)", "metadata": "root.LineAPI._cancelGroupInvitation", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 286 }, { "content": " def _inviteIntoGroup(self, groupId, contactIds=[], seq=0):\n \"\"\"Invite contacts into group\"\"\"\n return self._client.inviteIntoGroup(seq, groupId, contactIds)", "metadata": "root.LineAPI._inviteIntoGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 290 }, { "content": " def _leaveGroup(self, id):\n \"\"\"Leave a group\"\"\"\n return self._client.leaveGroup(0, id)", "metadata": "root.LineAPI._leaveGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 294 }, { "content": " def _getRecentMessages(self, id, count=1):\n \"\"\"Get recent messages from `id`\"\"\"\n return self._client.getRecentMessages(id, count)", "metadata": "root.LineAPI._getRecentMessages", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 298 }, { "content": " def _sendMessage(self, message, seq=0):\n \"\"\"Send a message to `id`. `id` could be contact id or group id\n\n :param message: `message` instance\n \"\"\"\n return self._client.sendMessage(seq, message)", "metadata": "root.LineAPI._sendMessage", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 302 }, { "content": " def _getLastOpRevision(self):\n return self._client.getLastOpRevision()", "metadata": "root.LineAPI._getLastOpRevision", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 309 }, { "content": " def _fetchOperations(self, revision, count=50):\n return self._client.fetchOperations(revision, count)", "metadata": "root.LineAPI._fetchOperations", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 312 }, { "content": " def _getMessageBoxCompactWrapUp(self, id):\n try:\n return self._client.getMessageBoxCompactWrapUp(id)\n except:\n return None", "metadata": "root.LineAPI._getMessageBoxCompactWrapUp", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 315 }, { "content": " def _getMessageBoxCompactWrapUpList(self, start=1, count=50):\n try:\n return self._client.getMessageBoxCompactWrapUpList(start, count)\n except Exception as e:\n msg = e\n self.raise_error(msg)", "metadata": "root.LineAPI._getMessageBoxCompactWrapUpList", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 321 }, { "content": " def raise_error(self, msg):\n \"\"\"Error format\"\"\"\n raise Exception(\"Error: %s\" % msg)", "metadata": "root.LineAPI.raise_error", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 328 }, { "content": " def _get_json(self, url):\n \"\"\"Get josn from given url with saved session and headers\"\"\"\n return json.loads(self._session.get(url, headers=self._headers).text)", "metadata": "root.LineAPI._get_json", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 332 }, { "content": " def post_content(self, url, data=None, files=None):\n return self._session.post(url, headers=self._headers, data=data, files=files)", "metadata": "root.LineAPI.post_content", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 336 } ]	[ { "span": "from thrift.transport import TTransport", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 39 }, { "span": "from thrift.transport import TSocket", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 36 }, { "span": "from curve.ttypes import TalkException", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 38 }, { "span": "from curve.ttypes import ToType, ContentType", "start_line": 29, "start_column": 0, "end_line": 29, "end_column": 44 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "--", " ", "codi", "ng", ":", " ", "utf", "-", "8", " ", "--", "_", "\\u\\u\\uNL\\u\\u\\u_", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "line", ".", "client", "\\", "10", ";", " ", " ", " ", " ", "~~~~~~~~~~~", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", "Line", "Client", " ", "for", " ", "sendin", "g", " ", "and", " ", "receiv", "ing", " ", "message", " ", "from", " ", "LINE", " ", "server", ".", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", ":", "copyr", "ight", ":", " ", "(", "c", ")", " ", "2014", " ", "by", " ", "Ta", "eh", "oon", " ", "Ki", "m", ".", "\\", "10", ";", " ", " ", " ", " ", ":", "license", ":", " ", "BS", "D", ",", " ", "see", " ", "LICENSE", " ", "for", " ", "more", " ", "deta", "il", "s", ".", "\\", "10", ";\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "rsa", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "requests_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "import_", "simplejson_", "as_", "json_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", "Import", "Error_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "import_", "json_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "from_", "thrift", "_", "._", "transport_", "import_", "TT", "rans", "port_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "thrift", "_", "._", "transport_", "import_", "TS", "ocket", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "thrift", "_", "._", "transport_", "import_", "TH", "ttp", "Client_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "thrift", "_", "._", "protocol_", "import_", "TC", "omp", "act", "Protocol_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "sys_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "reload_", "(_", "sys_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "sys_", "._", "setdefault", "encoding_", "(_", "\"", "utf", "-", "8", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", "from", " ", "curve", " ", "import", " ", "Curve", "Thri", "ft_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "curve_", "import_", "Curve", "Thri", "ft_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "curve_", "._", "ttype", "s_", "import_", "Tal", "k", "Exception_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "curve_", "._", "ttype", "s_", "import_", "To", "Type_", ",_", "Conten", "t", "Type_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "class_", "Line", "API_", "(_", "object_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "Thi", "s", " ", "class", " ", "is", " ", "a", " ", "wrapp", "er", " ", "of", " ", "LINE", " ", "API", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "LINE", "\\u", "DOMAIN_", "=_", "\"", "http", "://", "gd", "2", ".", "line", ".", "nav", "er", ".", "jp", "\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "LINE", "\\u", "HTTP", "\\u", "URL_", "=_", "LINE", "\\u", "DOMAIN_", "+_", "\"/", "api", "/", "v", "4", "/", "Tal", "k", "Service", ".", "do", "\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "LINE", "\\u", "HTTP", "\\u", "IN", "\\u", "URL_", "=_", "LINE", "\\u", "DOMAIN_", "+_", "\"/", "P4", "\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "LINE", "\\u", "CERT", "IFIC", "ATE", "\\u", "URL_", "=_", "LINE", "\\u", "DOMAIN_", "+_", "\"/", "Q", "\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "LINE", "\\u", "SES", "SION", "\\u", "LINE", "\\u", "URL_", "=_", "LINE", "\\u", "DOMAIN_", "+_", "\"/", "auth", "ct", "/", "v1", "/", "keys", "/", "line", "\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "LINE", "\\u", "SES", "SION", "\\u", "NAV", "ER", "\\u", "URL_", "=_", "LINE", "\\u", "DOMAIN_", "+_", "\"/", "auth", "ct", "/", "v1", "/", "keys", "/", "nav", "er", "\"_", 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Unused import	grafos-ml/test.fm/src/testfm/models/graphchi_models.py	[ { "content": "__author__ = 'linas'\n\nimport os\nimport logging\nimport subprocess\nimport tempfile\nimport datetime\nimport numpy as np\nfrom testfm.models.cutil.interface import IModel\nlogger = logging.getLogger(__name__)\nfrom scipy.io.mmio import mminfo, mmread, mmwrite\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class SVDpp(IModel):\n\n\n\n\n\n\n\n", "metadata": "root.SVDpp", "header": "['module', '___EOS___']", "index": 13 }, { "content": " def __init__(self, tmp_dir=\"/tmp\"):\n self.tmp_dir = tmp_dir\n params = {k: v[2] for k,v in self.param_details().items()}\n self.set_params(**params)", "metadata": "root.SVDpp.__init__", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 15 }, { "content": " def get_score(self, user, item):\n uid = self.umap[user]\n iid = self.imap[item]\n #check, I think graphchi changed the ouput?\n #u = np.add(self.U[uid, :10], self.U[uid, 10:])\n pred = self.global_mean + self.U_bias[uid] + self.V_bias[iid] + np.dot(self.U[uid], self.V[iid])\n return float(pred)", "metadata": "root.SVDpp.get_score", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 20 }, { "content": " def set_params(self, n_iterations=5, c_lambda=.05, c_gamma=.01):\n \"\"\"\n Set the parameters for the TensorCoFi\n \"\"\"\n self._n_iterations = n_iterations\n self._c_lambda = c_lambda\n self._c_gamma = c_gamma", "metadata": "root.SVDpp.set_params", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 28 }, { "content": " @classmethod\n def param_details(cls):\n \"\"\"\n Return parameter details for parameters\n \"\"\"\n return {\n #sorry but authors of svdpp do not provide a way to set dimensionality 'dim': (2, 100, 2, 5),\n 'n_iterations': (1, 20, 2, 5),\n 'c_lambda': (.1, 1., .1, .05),\n 'c_gamma': (0.001, 1.0, 0.1, 0.01)\n }", "metadata": "root.SVDpp.param_details", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 36 }, { "content": " def fit(self, training_data):\n training_filename = self.dump_data(training_data)\n logger.debug(\"Started training model {}\".format(__name__))\n cmd = \" \".join([\"svdpp\",\n \"--training={} \".format(training_filename),\n \"--biassgd_lambda={}\".format(self._c_lambda),\n \"--biassgd_gamma={}\".format(self._c_gamma),\n \"--minval=1 \",\n \"--maxval=5 \",\n \"--max_iter={}\".format(self._n_iterations),\n \"--quiet=1 \"])\n logger.debug(cmd)\n self.execute_command(cmd)\n\n self.global_mean = self.read_matrix(training_filename+\"_global_mean.mm\")\n self.U = self.read_matrix(training_filename+\"_U.mm\")\n self.V = self.read_matrix(training_filename+\"_V.mm\")\n #print training_filename\n self.U_bias = self.read_matrix(training_filename+\"_U_bias.mm\")\n self.V_bias = self.read_matrix(training_filename+\"_V_bias.mm\")", "metadata": "root.SVDpp.fit", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 48 }, { "content": " def dump_data(self, df):\n #first we need to reindex user and item and store their new ids\n _, df['u'] = np.unique(df.user, return_inverse=True)\n _, df['i'] = np.unique(df.item, return_inverse=True)\n\n self.umap = {\n key[0]: key[1] for key, _ in df.groupby(['user', 'u'])\n }\n\n self.imap = {\n key[0]: key[1] for key, _ in df.groupby(['item', 'i'])\n }\n\n filename = tempfile.mkstemp(prefix='graphchi', dir=self.tmp_dir, suffix=\".mtx\")\n f = os.fdopen(filename[0], \"w\")\n #print filename[1]\n f.write(\"%%MatrixMarket matrix coordinate real general\\n\")\n f.write(\"% Generated {}\\n\".format(datetime.datetime.now()))\n f.write(\"{} {} {}\\n\".format(len(df.user.unique()), len(df.item.unique()), len(df)))\n for idx, row in df.iterrows():\n r = int(row['rating'])\n if r == 0:\n r = 1\n f.write(\"{} {} {}\\n\".format(row['u']+1,row['i']+1,r))\n f.close()\n return filename[1]", "metadata": "root.SVDpp.dump_data", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 69 }, { "content": " def execute_command(self, cmd):\n if not os.environ['GRAPHCHI_ROOT']:\n raise EnvironmentError(\"Please set GRAPHCHI_ROOT\")\n #print cmd\n sub = subprocess.Popen(cmd.split(), stdout=subprocess.PIPE, stderr=subprocess.PIPE)\n out, err = sub.communicate()", "metadata": "root.SVDpp.execute_command", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 96 }, { "content": " def read_matrix(self, filename):\n \"\"\"\n reads grapchi format in the numpy array. The order is wrong in grapchi, therefore, we play tricks.\n\n About the second (order of rows vs. columns), we have a problem that in distributed graphlab we\n output the matrix by rows, since each node is a row, and nodes are on different machines.\n So to be compatible I left GraphChi code to confirm to GraphLab. In case it helps, here is a matlab mmread.m\n function which switches the order to be sorted by rows http://select.cs.cmu.edu/code/graphlab/mmread.m\n I am not sure if it is easy to fix it in python or not. [...]\n You are definitely right the the standard describes column\n order and not row order.\n \"\"\"\n\n logger.debug(\"Loading matrix market matrix \")\n f = open(filename, \"rb\")\n r = mmread(f)\n m = np.array(r.ravel())\n m = m.reshape(r.shape, order='F')\n # print \"mmread\", r.ravel(), r.shape\n # print \"trans\", m.ravel(), m.shape\n # if m.shape[0] > 1:\n # print m[1]\n f.close()\n return m", "metadata": "root.SVDpp.read_matrix", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 103 } ]	[ { "span": "from scipy.io.mmio import mminfo, mmread, mmwrite", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 49 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u", "author\\u\\u_", "=_", "'", "lin", "as", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "logging_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", 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Variable defined multiple times	ardekantur/pyglet/tests/resource/RES_LOAD.py	[ { "content": " def test16a(self):\n self.check_file(['dir1/res.zip/'], 'dir1/file.txt', 'F8')", "metadata": "root.TestCase.test16a", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 146 }, { "content": " def test16a(self):\n self.check_file(['dir1/res.zip/'], 'dir1/dir1/file.txt', 'F9')", "metadata": "root.TestCase.test16a", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 149 } ]	[ { "span": "test16a(", "start_line": 146, "start_column": 8, "end_line": 146, "end_column": 15 } ]	[ { "span": "test16a(", "start_line": 149, "start_column": 8, "end_line": 149, "end_column": 15 } ]	1	true	[ "[CLS]_", "Variable_", "defined_", "multiple_", "times_", "[SEP]_", "class_", "Test", "Case_", "(_", "unittest_", "._", "Test", "Case_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test", "16", "a_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "check", "\\u", "file_", "(_", "[_", "'", "dir", "1", "/", "res", ".", "zip", "/'_", "]_", ",_", "'", "dir", "1", "/", "file", ".", "txt", "'_", ",_", "'", "F8", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Test", "Case_", "(_", "unittest_", "._", "Test", "Case_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test", "16", "a_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "check", "\\u", "file_", "(_", "[_", "'", "dir", "1", "/", "res", ".", "zip", "/'_", "]_", ",_", "'", "dir", "1", "/", "dir", "1", "/", "file", ".", "txt", "'_", ",_", "'", "F", "9", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	ProgVal/Limnoria/plugins/Ctcp/plugin.py	[ { "content": "###\n# Copyright (c) 2002-2004, Jeremiah Fincher\n# All rights reserved.\n#\n# Redistribution and use in source and binary forms, with or without\n# modification, are permitted provided that the following conditions are met:\n#\n# * Redistributions of source code must retain the above copyright notice,\n# this list of conditions, and the following disclaimer.\n# * Redistributions in binary form must reproduce the above copyright notice,\n# this list of conditions, and the following disclaimer in the\n# documentation and/or other materials provided with the distribution.\n# * Neither the name of the author of this software nor the name of\n# contributors to this software may be used to endorse or promote products\n# derived from this software without specific prior written consent.\n#\n# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\n# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\n# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE\n# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE\n# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR\n# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF\n# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS\n# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN\n# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)\n# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE\n# POSSIBILITY OF SUCH DAMAGE.\n###\n\nimport time\n\nimport supybot.conf as conf\nimport supybot.utils as utils\nfrom supybot.commands import \nimport supybot.ircmsgs as ircmsgs\nimport supybot.ircutils as ircutils\nimport supybot.schedule as schedule\nimport supybot.callbacks as callbacks\nfrom supybot.i18n import PluginInternationalization, internationalizeDocstring\n_ = PluginInternationalization('Ctcp')\n\n\nClass = Ctcp\n# vim:set shiftwidth=4 softtabstop=4 expandtab textwidth=79:\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Ctcp(callbacks.PluginRegexp):\n \"\"\"Provides replies to common CTCPs (version, time, etc.), and a command\n to fetch version responses from channels.\"\"\"\n public = False\n regexps = ('ctcpPing', 'ctcpVersion', 'ctcpUserinfo',\n 'ctcpTime', 'ctcpFinger', 'ctcpSource')\n\n\n\n\n\n\n\n\n\n\n\n version = wrap(version, ['channel', getopts({'nicks':''})])", "metadata": "root.Ctcp", "header": "['module', '___EOS___']", "index": 41 }, { "content": " def __init__(self, irc):\n self.__parent = super(Ctcp, self)\n self.__parent.__init__(irc)\n self.ignores = ircutils.IrcDict()\n self.floods = ircutils.FloodQueue(conf.supybot.abuse.flood.interval())\n conf.supybot.abuse.flood.interval.addCallback(self.setFloodQueueTimeout)", "metadata": "root.Ctcp.__init__", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 47 }, { "content": " def setFloodQueueTimeout(self, args, *kwargs):\n self.floods.timeout = conf.supybot.abuse.flood.interval()", "metadata": "root.Ctcp.setFloodQueueTimeout", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 54 }, { "content": " def callCommand(self, command, irc, msg, args, *kwargs):\n if conf.supybot.abuse.flood.ctcp():\n now = time.time()\n for (ignore, expiration) in self.ignores.items():\n if expiration < now:\n del self.ignores[ignore]\n elif ircutils.hostmaskPatternEqual(ignore, msg.prefix):\n return\n self.floods.enqueue(msg)\n max = conf.supybot.abuse.flood.ctcp.maximum()\n if self.floods.len(msg) > max:\n expires = conf.supybot.abuse.flood.ctcp.punishment()\n self.log.warning('Apparent CTCP flood from %s, '\n 'ignoring CTCP messages for %s seconds.',\n msg.prefix, expires)\n ignoreMask = '!%s@%s' % (msg.user, msg.host)\n self.ignores[ignoreMask] = now + expires\n return\n self.__parent.callCommand(command, irc, msg, args, *kwargs)", "metadata": "root.Ctcp.callCommand", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 57 }, { "content": " def _reply(self, irc, msg, s):\n s = '\\x01%s\\x01' % s\n irc.reply(s, notice=True, private=True, to=msg.nick)", "metadata": "root.Ctcp._reply", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 77 }, { "content": " def ctcpPing(self, irc, msg, match):\n \"^\\x01PING(?: (.+))?\\x01$\"\n self.log.info('Received CTCP PING from %s', msg.prefix)\n payload = match.group(1)\n if payload:\n self._reply(irc, msg, 'PING %s' % match.group(1))\n else:\n self._reply(irc, msg, 'PING')", "metadata": "root.Ctcp.ctcpPing", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 81 }, { "content": " def ctcpVersion(self, irc, msg, match):\n \"^\\x01VERSION\\x01$\"\n self.log.info('Received CTCP VERSION from %s', msg.prefix)\n self._reply(irc, msg, 'VERSION Supybot %s' % conf.version)", "metadata": "root.Ctcp.ctcpVersion", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 90 }, { "content": " def ctcpUserinfo(self, irc, msg, match):\n \"^\\x01USERINFO\\x01$\"\n self.log.info('Received CTCP USERINFO from %s', msg.prefix)\n self._reply(irc, msg, 'USERINFO %s' % self.registryValue('userinfo'))", "metadata": "root.Ctcp.ctcpUserinfo", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 95 }, { "content": " def ctcpTime(self, irc, msg, match):\n \"^\\x01TIME\\x01$\"\n self.log.info('Received CTCP TIME from %s', msg.prefix)\n self._reply(irc, msg, 'TIME %s' % time.ctime())", "metadata": "root.Ctcp.ctcpTime", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 100 }, { "content": " def ctcpFinger(self, irc, msg, match):\n \"^\\x01FINGER\\x01$\"\n self.log.info('Received CTCP FINGER from %s', msg.prefix)\n self._reply(irc, msg, 'FINGER ' + \n _('Supybot, the best Python IRC bot in existence!'))", "metadata": "root.Ctcp.ctcpFinger", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 105 }, { "content": " def ctcpSource(self, irc, msg, match):\n \"^\\x01SOURCE\\x01$\"\n self.log.info('Received CTCP SOURCE from %s', msg.prefix)\n self._reply(irc, msg,\n 'SOURCE https://github.com/ProgVal/Limnoria')", "metadata": "root.Ctcp.ctcpSource", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 111 }, { "content": " def doNotice(self, irc, msg):\n if ircmsgs.isCtcp(msg):\n try:\n (version, payload) = msg.args[1][1:-1].split(None, 1)\n except ValueError:\n return\n if version == 'VERSION':\n self.versions.setdefault(payload, []).append(msg.nick)", "metadata": "root.Ctcp.doNotice", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 117 }, { "content": " @internationalizeDocstring\n def version(self, irc, msg, args, channel, optlist):\n \"\"\"[<channel>] [--nicks]\n\n Sends a CTCP VERSION to <channel>, returning the various\n version strings returned. It waits for 10 seconds before returning\n the versions received at that point. If --nicks is given, nicks are\n associated with the version strings; otherwise, only the version\n strings are given.\n \"\"\"\n self.versions = ircutils.IrcDict()\n nicks = False\n for (option, arg) in optlist:\n if option == 'nicks':\n nicks = True\n irc.queueMsg(ircmsgs.privmsg(channel, '\\x01VERSION\\x01'))\n def doReply():\n if self.versions:\n L = []\n for (reply, nickslist) in self.versions.items():\n if nicks:\n L.append(format('%L responded with %q', nickslist, reply))\n else:\n L.append(reply)\n irc.reply(format('%L', L))\n else:\n irc.reply('I received no version responses.')\n wait = self.registryValue('versionWait')\n schedule.addEvent(doReply, time.time()+wait)", "metadata": "root.Ctcp.version", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 126 } ]	[ { "span": "import supybot.utils as utils", "start_line": 32, "start_column": 0, "end_line": 32, "end_column": 29 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Imprecise assert	Matt-Deacalion/Pomodoro-Calculator/pomodoro_calculator/test/test_main.py	[ { "content": " def test_retriever_class_exists(self):\n \"\"\"\n Does the `PomodoroCalculator` class exist?\n \"\"\"\n self.assertTrue('PomodoroCalculator' in globals())", "metadata": "root.PomodoroTest.test_retriever_class_exists", "header": "['class', 'PomodoroTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 13 } ]	[ { "span": "self.assertTrue('PomodoroCalculator' in globals())", "start_line": 17, "start_column": 8, "end_line": 17, "end_column": 58 } ]	[]	1	true	[ "[CLS]_", "Imp", "reci", "se_", "assert_", "[SEP]_", "class_", "Po", "modo", "ro", "Test_", "(_", "unittest_", "._", "Test", "Case_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "retrieve", "r", "\\u", "class", "\\u", "exists_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "Do", "es", " ", "the", " ", "`", "Po", "modo", "ro", "Calculat", "or", "`", " ", "class", " ", "exist", "?", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "assert", "True_", "(_", "'", "Po", "modo", "ro", "Calculat", "or", "'_", "in_", "globals_", "(_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2 ]
Unused import	bitxbay/BitXBay/electru/build/lib/electrum_plugins/pointofsale.py	[ { "content": "import re\nimport platform\nfrom decimal import Decimal\nfrom urllib import quote\n\nfrom PyQt4.QtGui import \nfrom PyQt4.QtCore import \nimport PyQt4.QtCore as QtCore\nimport PyQt4.QtGui as QtGui\n\nfrom electrum_gui.qt.qrcodewidget import QRCodeWidget\n\nfrom electrum import bmp, pyqrnative, BasePlugin\nfrom electrum.i18n import _\n\n\nif platform.system() == 'Windows':\n MONOSPACE_FONT = 'Lucida Console'\nelif platform.system() == 'Darwin':\n MONOSPACE_FONT = 'Monaco'\nelse:\n MONOSPACE_FONT = 'monospace'\n\ncolumn_index = 4\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class QR_Window(QWidget):\n\n\n", "metadata": "root.QR_Window", "header": "['module', '___EOS___']", "index": 25 }, { "content": " def __init__(self, exchanger):\n QWidget.__init__(self)\n self.exchanger = exchanger\n self.setWindowTitle('Electrum - '+_('Invoice'))\n self.setMinimumSize(800, 250)\n self.address = ''\n self.label = ''\n self.amount = 0\n self.setFocusPolicy(QtCore.Qt.NoFocus)\n\n main_box = QHBoxLayout()\n \n self.qrw = QRCodeWidget()\n main_box.addWidget(self.qrw, 1)\n\n vbox = QVBoxLayout()\n main_box.addLayout(vbox)\n\n self.address_label = QLabel(\"\")\n #self.address_label.setFont(QFont(MONOSPACE_FONT))\n vbox.addWidget(self.address_label)\n\n self.label_label = QLabel(\"\")\n vbox.addWidget(self.label_label)\n\n self.amount_label = QLabel(\"\")\n vbox.addWidget(self.amount_label)\n\n vbox.addStretch(1)\n self.setLayout(main_box)", "metadata": "root.QR_Window.__init__", "header": "['class', 'QR_Window', '(', 'QWidget', ')', ':', '___EOS___']", "index": 27 }, { "content": " def set_content(self, addr, label, amount, currency):\n self.address = addr\n address_text = \"<span style='font-size: 18pt'>%s</span>\" % addr if addr else \"\"\n self.address_label.setText(address_text)\n\n if currency == 'BTC': currency = None\n amount_text = ''\n if amount:\n if currency:\n try:\n self.amount = Decimal(amount) / self.exchanger.exchange(1, currency) if currency else amount\n except Exception:\n self.amount = None\n else:\n self.amount = Decimal(amount)\n self.amount = self.amount.quantize(Decimal('1.0000'))\n\n if currency:\n amount_text += \"<span style='font-size: 18pt'>%s %s</span><br/>\" % (amount, currency)\n amount_text += \"<span style='font-size: 21pt'>%s</span> <span style='font-size: 16pt'>BTC</span> \" % str(self.amount) \n else:\n self.amount = None\n \n self.amount_label.setText(amount_text)\n\n self.label = label\n label_text = \"<span style='font-size: 21pt'>%s</span>\" % label if label else \"\"\n self.label_label.setText(label_text)\n\n msg = 'bitcoin:'+self.address\n if self.amount is not None:\n msg += '?amount=%s'%(str( self.amount))\n if self.label is not None:\n encoded_label = quote(self.label)\n msg += '&label=%s'%(encoded_label)\n elif self.label is not None:\n encoded_label = quote(self.label)\n msg += '?label=%s'%(encoded_label)\n \n self.qrw.set_addr( msg )", "metadata": "root.QR_Window.set_content", "header": "['class', 'QR_Window', '(', 'QWidget', ')', ':', '___EOS___']", "index": 59 }, { "content": "class Plugin(BasePlugin):\n\n\n\n\n\n\n\n \n\n\n \n\n\n\n\n \n\n\n \n\n\n \n\n\n\n\n\n ", "metadata": "root.Plugin", "header": "['module', '___EOS___']", "index": 103 }, { "content": " def fullname(self):\n return 'Point of Sale'", "metadata": "root.Plugin.fullname", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 105 }, { "content": " def description(self):\n return _('Show QR code window and amounts requested for each address. Add menu item to request amount.')+_(' Note: This requires the exchange rate plugin to be installed.')", "metadata": "root.Plugin.description", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 108 }, { "content": " def init(self):\n self.window = self.gui.main_window\n self.wallet = self.window.wallet\n\n self.qr_window = None\n self.merchant_name = self.config.get('merchant_name', 'Invoice')\n\n self.window.expert_mode = True\n self.window.receive_list.setColumnCount(5)\n self.window.receive_list.setHeaderLabels([ _('Address'), _('Label'), _('Balance'), _('Tx'), _('Request')])\n self.requested_amounts = {}\n self.toggle_QR_window(True)", "metadata": "root.Plugin.init", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 111 }, { "content": " def enable(self):\n if not self.config.get('use_exchange_rate'):\n self.gui.main_window.show_message(\"Please enable exchange rates first!\")\n return False\n\n return BasePlugin.enable(self)", "metadata": "root.Plugin.enable", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 124 }, { "content": " def load_wallet(self, wallet):\n self.wallet = wallet\n self.requested_amounts = self.wallet.storage.get('requested_amounts',{}) ", "metadata": "root.Plugin.load_wallet", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 132 }, { "content": " def close(self):\n self.window.receive_list.setHeaderLabels([ _('Address'), _('Label'), _('Balance'), _('Tx')])\n self.window.receive_list.setColumnCount(4)\n for i,width in enumerate(self.window.column_widths['receive']):\n self.window.receive_list.setColumnWidth(i, width)\n self.toggle_QR_window(False)", "metadata": "root.Plugin.close", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 136 }, { "content": " def close_main_window(self):\n if self.qr_window: \n self.qr_window.close()\n self.qr_window = None", "metadata": "root.Plugin.close_main_window", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 144 }, { "content": " def timer_actions(self):\n if self.qr_window:\n self.qr_window.qrw.update_qr()", "metadata": "root.Plugin.timer_actions", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 150 }, { "content": " def toggle_QR_window(self, show):\n if show and not self.qr_window:\n self.qr_window = QR_Window(self.gui.exchanger)\n self.qr_window.setVisible(True)\n self.qr_window_geometry = self.qr_window.geometry()\n item = self.window.receive_list.currentItem()\n if item:\n address = str(item.text(1))\n label = self.wallet.labels.get(address)\n amount, currency = self.requested_amounts.get(address, (None, None))\n self.qr_window.set_content( address, label, amount, currency )\n\n elif show and self.qr_window and not self.qr_window.isVisible():\n self.qr_window.setVisible(True)\n self.qr_window.setGeometry(self.qr_window_geometry)\n\n elif not show and self.qr_window and self.qr_window.isVisible():\n self.qr_window_geometry = self.qr_window.geometry()\n self.qr_window.setVisible(False)", "metadata": "root.Plugin.toggle_QR_window", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 155 }, { "content": " def update_receive_item(self, address, item):\n try:\n amount, currency = self.requested_amounts.get(address, (None, None))\n except Exception:\n print \"cannot get requested amount\", address, self.requested_amounts.get(address)\n amount, currency = None, None\n self.requested_amounts.pop(address)\n\n amount_str = amount + (' ' + currency if currency else '') if amount is not None else ''\n item.setData(column_index,0,amount_str)", "metadata": "root.Plugin.update_receive_item", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 177 }, { "content": " def current_item_changed(self, a):\n if not self.wallet: \n return\n if a is not None and self.qr_window and self.qr_window.isVisible():\n address = str(a.text(0))\n label = self.wallet.labels.get(address)\n try:\n amount, currency = self.requested_amounts.get(address, (None, None))\n except Exception:\n amount, currency = None, None\n self.qr_window.set_content( address, label, amount, currency )", "metadata": "root.Plugin.current_item_changed", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 190 }, { "content": " def item_changed(self, item, column):\n if column != column_index:\n return\n address = str( item.text(0) )\n text = str( item.text(column) )\n try:\n seq = self.wallet.get_address_index(address)\n index = seq[1][1]\n except Exception:\n print \"cannot get index\"\n return\n\n text = text.strip().upper()\n #print text\n m = re.match('^(\\d(\|\\.\\d))\\s*(\|BTC\|EUR\|USD\|GBP\|CNY\|JPY\|RUB\|BRL)$', text)\n if m and m.group(1) and m.group(1)!='.':\n amount = m.group(1)\n currency = m.group(3)\n if not currency:\n currency = 'BTC'\n else:\n currency = currency.upper()\n \n self.requested_amounts[address] = (amount, currency)\n self.wallet.storage.put('requested_amounts', self.requested_amounts, True)\n\n label = self.wallet.labels.get(address)\n if label is None:\n label = self.merchant_name + ' - %04d'%(index+1)\n self.wallet.labels[address] = label\n\n if self.qr_window:\n self.qr_window.set_content( address, label, amount, currency )\n\n else:\n item.setText(column,'')\n if address in self.requested_amounts:\n self.requested_amounts.pop(address)\n \n self.window.update_receive_item(self.window.receive_list.currentItem())", "metadata": "root.Plugin.item_changed", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 204 }, { "content": " def edit_amount(self):\n l = self.window.receive_list\n item = l.currentItem()\n item.setFlags(Qt.ItemIsEditable\|Qt.ItemIsSelectable \| Qt.ItemIsUserCheckable \| Qt.ItemIsEnabled \| Qt.ItemIsDragEnabled)\n l.editItem( item, column_index )\n item.setFlags(Qt.ItemIsSelectable \| Qt.ItemIsUserCheckable \| Qt.ItemIsEnabled \| Qt.ItemIsDragEnabled)", "metadata": "root.Plugin.edit_amount", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 248 }, { "content": " def receive_menu(self, menu, addr):\n menu.addAction(_(\"Request amount\"), self.edit_amount)\n menu.addAction(_(\"Show Invoice\"), lambda: self.toggle_QR_window(True))", "metadata": "root.Plugin.receive_menu", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 256 } ]	[ { "span": "import PyQt4.QtGui as QtGui", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 27 }, { "span": "from electrum import bmp, pyqrnative, BasePlugin", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 48 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "import_", "re_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "platform_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "decimal_", "import_", "Decimal_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "urllib_", "import_", "quote_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "Py", "Qt4_", "._", "Qt", "Gui_", "import_", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "Py", "Qt4_", "._", "Qt", "Core_", "import_", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "Py", "Qt4_", "._", "Qt", "Core_", "as_", "Qt", "Core_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "Py", "Qt4_", "._", "Qt", "Gui_", "as_", "Qt", "Gui_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "electr", "um", "\\u", "gui_", "._", "qt_", "._", "qrc", "ode", "widget_", "import_", "QR", "Code", "Widget_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "electr", "um_", "import_", "bmp_", ",_", "pyq", "rna", "tive_", ",_", "Base", "Plugin_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "electr", "um_", "._", "i18n_", 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Non-standard exception raised in special method	katharosada/botchallenge/client/google/protobuf/internal/cpp_message.py	[ { "content": " def __hash__(self):\n raise TypeError('unhashable object')", "metadata": "root.RepeatedScalarContainer.__hash__", "header": "['class', 'RepeatedScalarContainer', '(', 'object', ')', ':', '___EOS___']", "index": 158 }, { "content": " def __hash__(self):\n raise TypeError('unhashable object')", "metadata": "root.RepeatedCompositeContainer.__hash__", "header": "['class', 'RepeatedCompositeContainer', '(', 'object', ')', ':', '___EOS___']", "index": 246 } ]	[ { "span": "def __hash__(self):", "start_line": 158, "start_column": 2, "end_line": 158, "end_column": 21 }, { "span": "def __hash__(self):", "start_line": 246, "start_column": 2, "end_line": 246, "end_column": 21 } ]	[]	1	true	[ "[CLS]_", "Non", "_", "-_", "standard_", "exception_", "raised_", "in_", "special_", "method_", "[SEP]_", "class_", "Repeat", "ed", "Scala", "r", "Container_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u\\u", "hash\\u\\u_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "raise_", "Type", "Error_", "(_", "'", "unh", "ash", "able", " ", "object", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Repeat", "ed", "Composit", "e", "Container_", "(_", "object_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u\\u", "hash\\u\\u_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "raise_", "Type", "Error_", "(_", "'", "unh", "ash", "able", " ", "object", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	deanmalmgren/flo/flo/shell.py	[ { "content": "\"\"\"Module for executing commands on the command line\n\"\"\"\nimport subprocess\nimport sys\nimport threading\n\nfrom . import exceptions\nfrom . import logger as flo_logger\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def log_output(stream, block_size=1):\n \"\"\"This function logs the output from the subprocess'ed command by\n reading the output stream in small blocks of size `block_size`\n bytes to properly handle backspacing outputs (issue #53)\n \"\"\"\n logger = flo_logger.get()\n while True:\n data = stream.read(block_size)\n if not data:\n break\n logger.write(data)\n stream.close()", "metadata": "root.log_output", "header": "['module', '___EOS___']", "index": 10 }, { "content": "def run(directory, command):\n \"\"\"Run the specified shell command using Fabric-like behavior.\"\"\"\n\n # combine stderr and stdout output when running command so we can\n # stream output to the logger for output to terminal and file\n # simultaneously\n wrapped_command = \"cd %s && %s\" % (directory, command)\n pipe = subprocess.Popen(\n wrapped_command, shell=True,\n stdout=subprocess.PIPE, stderr=subprocess.STDOUT,\n )\n\n # this uses threading to capture the output in real time in a\n # non-blocking way and use the log_output function to report the\n # output using the logging module. This framework takes\n # inspiration from http://stackoverflow.com/a/4985080/564709\n thread = threading.Thread(target=log_output, args=(pipe.stdout,))\n thread.daemon = True\n thread.start()\n thread.join()\n pipe.wait()\n\n # if pipe is busted, raise an error\n if pipe.returncode != 0:\n raise exceptions.ShellError(pipe.returncode)", "metadata": "root.run", "header": "['module', '___EOS___']", "index": 24 } ]	[ { "span": "import sys", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 10 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\"\"\"", "Modul", "e", " ", "for", " ", "executi", "ng", " ", "command", "s", " ", "on", " ", "the", " ", "command", " ", "line", "\\", "10", ";\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "subprocess_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "sys_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "threading_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "._", "import_", "exceptions_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "._", "import_", "logger_", "as_", "flo", "\\u", "logger_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "log", "\\u", "output_", "(_", "stream_", ",_", "block", "\\u", "size_", "=_", "1_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "Thi", "s", " ", "function", " ", "logs", " ", "the", " ", "output", " ", "from", " ", "the", " ", "subproc", "ess", "'", "ed", " ", "command", " ", "by", "\\", "10", ";", " ", " ", " ", " ", "readi", "ng", " ", "the", " ", "output", " ", "stream", " ", "in", " ", "small", " ", "blocks", " ", "of", " ", "size", " ", "`", "block", "\\u", "size", "`", "\\", "10", ";", " ", " ", " ", " ", "bytes", " ", "to", " ", "proper", "ly", " ", "handle", " ", "backs", "pacing", " ", "output", "s", " ", "(", "issue", " ", "#", "5", "3", ")", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "logger_", "=_", "flo", "\\u", "logger_", "._", "get_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "while_", "True_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "data_", "=_", "stream_", "._", "read_", "(_", "block", "\\u", "size_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "not_", "data_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "break_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "logger_", "._", "write_", "(_", "data_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "stream_", "._", "close_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "run_", "(_", "directory_", ",_", "command_", 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"\\u\\u\\uNL\\u\\u\\u_", "thread_", "=_", "threading_", "._", "Thread_", "(_", "target_", "=_", "log", "\\u", "output_", ",_", "args_", "=_", "(_", "pipe_", "._", "stdout_", ",_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "thread_", "._", "daemon_", "=_", "True_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "thread_", "._", "start_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "thread_", "._", "join_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "pipe_", "._", "wait_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "if", " ", "pipe", " ", "is", " ", "bust", "ed", ",", " ", "raise", " ", "an", " ", "error_", "\\u\\u\\uNL\\u\\u\\u_", "if_", "pipe_", "._", "returncode_", "!=_", "0_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "raise_", "exceptions_", "._", "Shel", "l", "Error_", "(_", "pipe_", "._", "returncode_", ")_" ]	[ 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 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Variable defined multiple times	mtth/hdfs/test/test_client.py	[ { "content": " def test_with_selection(self):\n fnames = ['part-m-00000.avro', 'part-m-00001.avro']\n self.client.write(psp.join('foo', '.header'), 'metadata')\n self.client.write(psp.join('foo', fnames[0]), 'first')\n self.client.write(psp.join('foo', fnames[1]), 'second')\n parts = self.client.parts('foo', parts=1)\n eq_(len(parts), 1)\n ok_(parts[0] in fnames)", "metadata": "root.TestParts.test_with_selection", "header": "['class', 'TestParts', '(', '_IntegrationTest', ')', ':', '___EOS___']", "index": 1031 }, { "content": " def test_with_selection(self):\n fnames = ['part-m-00000.avro', 'part-m-00001.avro']\n self.client.write(psp.join('foo', '.header'), 'metadata')\n self.client.write(psp.join('foo', fnames[0]), 'first')\n self.client.write(psp.join('foo', fnames[1]), 'second')\n eq_(self.client.parts('foo', parts=[1]), fnames[1:])", "metadata": "root.TestParts.test_with_selection", "header": "['class', 'TestParts', '(', '_IntegrationTest', ')', ':', '___EOS___']", "index": 1040 } ]	[ { "span": "test_with_selection(", "start_line": 1031, "start_column": 6, "end_line": 1031, "end_column": 25 } ]	[ { "span": "test_with_selection(", "start_line": 1040, "start_column": 6, "end_line": 1040, "end_column": 25 } ]	1	true	[ "[CLS]_", "Variable_", "defined_", "multiple_", "times_", "[SEP]_", "class_", "Test", "Parts_", "(_", "\\u", "Integrati", "on", "Test_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "with", "\\u", "selection_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "fnames_", "=_", "[_", "'", "part", "-", "m", "-0", "0000", ".", "avro", "'_", ",_", "'", "part", "-", "m", "-0", "0001", ".", "avro", "'_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "client_", "._", "write_", "(_", "psp", "_", "._", "join_", "(_", "'", "foo", "'_", ",_", "'.", "header", "'_", ")_", ",_", "'", "metadata", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "client_", "._", "write_", "(_", "psp", "_", "._", "join_", "(_", "'", "foo", "'_", ",_", "fnames_", "[_", "0_", "]_", ")_", ",_", "'", "first", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "client_", "._", "write_", "(_", "psp", "_", "._", "join_", "(_", "'", "foo", "'_", ",_", "fnames_", "[_", "1_", "]_", ")_", ",_", "'", "second", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "parts_", "=_", "self_", "._", "client_", "._", "parts_", "(_", "'", "foo", "'_", ",_", "parts_", "=_", "1_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "eq\\u_", "(_", "len_", "(_", "parts_", ")_", ",_", "1_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "ok\\u_", "(_", "parts_", "[_", "0_", "]_", "in_", "fnames_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Test", "Parts_", "(_", "\\u", "Integrati", "on", "Test_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "test\\u", "with", 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"[_", "1_", "]_", ")_", ",_", "fnames_", "[_", "1_", ":_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]	[ 4, 4, 4, 4, 4, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]
Unused import	scieloorg/scielo-manager/scielomanager/journalmanager/migrations/0015_fix_nulls_in_init_vol.py	[ { "content": "# -- coding: utf-8 --\nfrom south.utils import datetime_utils as datetime\nfrom south.db import db\nfrom south.v2 import DataMigration\nfrom django.db import models\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Migration(DataMigration):\n\n\n\n models = {\n 'auth.group': {\n 'Meta': {'object_name': 'Group'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),\n 'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Permission']\", 'symmetrical': 'False', 'blank': 'True'})\n },\n 'auth.permission': {\n 'Meta': {'ordering': \"('content_type__app_label', 'content_type__model', 'codename')\", 'unique_together': \"(('content_type', 'codename'),)\", 'object_name': 'Permission'},\n 'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['contenttypes.ContentType']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})\n },\n 'auth.user': {\n 'Meta': {'object_name': 'User'},\n 'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),\n 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),\n 'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),\n 'groups': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Group']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),\n 'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),\n 'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),\n 'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Permission']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})\n },\n 'contenttypes.contenttype': {\n 'Meta': {'ordering': \"('name',)\", 'unique_together': \"(('app_label', 'model'),)\", 'object_name': 'ContentType', 'db_table': \"'django_content_type'\"},\n 'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})\n },\n 'journalmanager.aheadpressrelease': {\n 'Meta': {'object_name': 'AheadPressRelease', '_ormbases': ['journalmanager.PressRelease']},\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'press_releases'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'pressrelease_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['journalmanager.PressRelease']\", 'unique': 'True', 'primary_key': 'True'})\n },\n 'journalmanager.article': {\n 'Meta': {'object_name': 'Article'},\n 'aid': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '32'}),\n 'article_type': ('django.db.models.fields.CharField', [], {'max_length': '32', 'db_index': 'True'}),\n 'articles_linkage_is_pending': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'created_at': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now', 'auto_now_add': 'True', 'blank': 'True'}),\n 'doi': ('django.db.models.fields.CharField', [], {'default': \"u''\", 'max_length': '2048', 'db_index': 'True'}),\n 'domain_key': ('django.db.models.fields.SlugField', [], {'unique': 'True', 'max_length': '2048', 'db_index': 'False'}),\n 'es_is_dirty': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'es_updated_at': ('django.db.models.fields.DateTimeField', [], {'null': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_aop': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_visible': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'issn_epub': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'issn_ppub': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'issue': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'articles'\", 'null': 'True', 'to': \"orm['journalmanager.Issue']\"}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'articles'\", 'null': 'True', 'to': \"orm['journalmanager.Journal']\"}),\n 'journal_title': ('django.db.models.fields.CharField', [], {'max_length': '512', 'db_index': 'True'}),\n 'related_articles': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'to': \"orm['journalmanager.Article']\", 'null': 'True', 'through': \"orm['journalmanager.ArticlesLinkage']\", 'blank': 'True'}),\n 'updated_at': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now', 'auto_now': 'True', 'blank': 'True'}),\n 'xml': ('scielomanager.custom_fields.XMLSPSField', [], {}),\n 'xml_version': ('django.db.models.fields.CharField', [], {'max_length': '9'})\n },\n 'journalmanager.articleslinkage': {\n 'Meta': {'object_name': 'ArticlesLinkage'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'link_to': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'referrers'\", 'to': \"orm['journalmanager.Article']\"}),\n 'link_type': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'referrer': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'links_to'\", 'to': \"orm['journalmanager.Article']\"})\n },\n 'journalmanager.collection': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Collection'},\n 'acronym': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '16', 'blank': 'True'}),\n 'address': ('django.db.models.fields.TextField', [], {}),\n 'address_complement': ('django.db.models.fields.CharField', [], {'max_length': '128', 'blank': 'True'}),\n 'address_number': ('django.db.models.fields.CharField', [], {'max_length': '8'}),\n 'city': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'collection': ('django.db.models.fields.related.ManyToManyField', [], {'related_name': \"'user_collection'\", 'to': \"orm['auth.User']\", 'through': \"orm['journalmanager.UserCollections']\", 'blank': 'True', 'symmetrical': 'False', 'null': 'True'}),\n 'country': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75'}),\n 'fax': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'logo': ('django.db.models.fields.files.ImageField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '128', 'db_index': 'True'}),\n 'name_slug': ('django.db.models.fields.SlugField', [], {'max_length': '50', 'unique': 'True', 'null': 'True', 'blank': 'True'}),\n 'phone': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'state': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'url': ('django.db.models.fields.URLField', [], {'max_length': '200'}),\n 'zip_code': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.institution': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Institution'},\n 'acronym': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '16', 'blank': 'True'}),\n 'address': ('django.db.models.fields.TextField', [], {}),\n 'address_complement': ('django.db.models.fields.CharField', [], {'max_length': '128', 'blank': 'True'}),\n 'address_number': ('django.db.models.fields.CharField', [], {'max_length': '8'}),\n 'cel': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'city': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'complement': ('django.db.models.fields.TextField', [], {'default': \"''\", 'blank': 'True'}),\n 'country': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75'}),\n 'fax': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),\n 'phone': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'state': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'zip_code': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.issue': {\n 'Meta': {'ordering': \"('created', 'id')\", 'object_name': 'Issue'},\n 'cover': ('django.db.models.fields.files.ImageField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'ctrl_vocabulary': ('django.db.models.fields.CharField', [], {'max_length': '64', 'blank': 'True'}),\n 'editorial_standard': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_marked_up': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Journal']\"}),\n 'label': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '64', 'null': 'True', 'blank': 'True'}),\n 'number': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'order': ('django.db.models.fields.IntegerField', [], {'blank': 'True'}),\n 'publication_end_month': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),\n 'publication_start_month': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),\n 'publication_year': ('django.db.models.fields.IntegerField', [], {}),\n 'section': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Section']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'spe_text': ('django.db.models.fields.CharField', [], {'max_length': '15', 'null': 'True', 'blank': 'True'}),\n 'suppl_text': ('django.db.models.fields.CharField', [], {'max_length': '15', 'null': 'True', 'blank': 'True'}),\n 'total_documents': ('django.db.models.fields.IntegerField', [], {'default': '0'}),\n 'type': ('django.db.models.fields.CharField', [], {'default': \"'regular'\", 'max_length': '15'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'use_license': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.UseLicense']\", 'null': 'True'}),\n 'volume': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'})\n },\n 'journalmanager.issuetitle': {\n 'Meta': {'object_name': 'IssueTitle'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'issue': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Issue']\"}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '256'})\n },\n 'journalmanager.journal': {\n 'Meta': {'ordering': \"('title', 'id')\", 'object_name': 'Journal'},\n 'abstract_keyword_languages': ('django.db.models.fields.related.ManyToManyField', [], {'related_name': \"'abstract_keyword_languages'\", 'symmetrical': 'False', 'to': \"orm['journalmanager.Language']\"}),\n 'acronym': ('django.db.models.fields.CharField', [], {'max_length': '16'}),\n 'ccn_code': ('django.db.models.fields.CharField', [], {'default': \"''\", 'max_length': '64', 'blank': 'True'}),\n 'collections': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Collection']\", 'through': \"orm['journalmanager.Membership']\", 'symmetrical': 'False'}),\n 'copyrighter': ('django.db.models.fields.CharField', [], {'max_length': '254'}),\n 'cover': ('scielomanager.custom_fields.ContentTypeRestrictedFileField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'creator': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'enjoy_creator'\", 'to': \"orm['auth.User']\"}),\n 'ctrl_vocabulary': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'current_ahead_documents': ('django.db.models.fields.IntegerField', [], {'default': '0', 'max_length': '3', 'null': 'True', 'blank': 'True'}),\n 'editor': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'editor_journal'\", 'null': 'True', 'to': \"orm['auth.User']\"}),\n 'editor_address': ('django.db.models.fields.CharField', [], {'max_length': '512'}),\n 'editor_address_city': ('django.db.models.fields.CharField', [], {'max_length': '256'}),\n 'editor_address_country': ('scielo_extensions.modelfields.CountryField', [], {'max_length': '2'}),\n 'editor_address_state': ('django.db.models.fields.CharField', [], {'max_length': '128'}),\n 'editor_address_zip': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'editor_email': ('django.db.models.fields.EmailField', [], {'max_length': '75'}),\n 'editor_name': ('django.db.models.fields.CharField', [], {'max_length': '512'}),\n 'editor_phone1': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'editor_phone2': ('django.db.models.fields.CharField', [], {'max_length': '32', 'null': 'True', 'blank': 'True'}),\n 'editorial_standard': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'eletronic_issn': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'final_num': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'final_vol': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'final_year': ('django.db.models.fields.CharField', [], {'max_length': '4', 'null': 'True', 'blank': 'True'}),\n 'frequency': ('django.db.models.fields.CharField', [], {'max_length': '16'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'index_coverage': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),\n 'init_num': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'}),\n 'init_vol': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'}),\n 'init_year': ('django.db.models.fields.CharField', [], {'max_length': '4'}),\n 'is_indexed_aehci': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_indexed_scie': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_indexed_ssci': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'languages': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Language']\", 'symmetrical': 'False'}),\n 'logo': ('scielomanager.custom_fields.ContentTypeRestrictedFileField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'medline_code': ('django.db.models.fields.CharField', [], {'max_length': '64', 'null': 'True', 'blank': 'True'}),\n 'medline_title': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),\n 'notes': ('django.db.models.fields.TextField', [], {'max_length': '254', 'null': 'True', 'blank': 'True'}),\n 'other_previous_title': ('django.db.models.fields.CharField', [], {'max_length': '255', 'blank': 'True'}),\n 'previous_ahead_documents': ('django.db.models.fields.IntegerField', [], {'default': '0', 'max_length': '3', 'null': 'True', 'blank': 'True'}),\n 'previous_title': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'prev_title'\", 'null': 'True', 'to': \"orm['journalmanager.Journal']\"}),\n 'print_issn': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'pub_level': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'publication_city': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'publisher_country': ('scielo_extensions.modelfields.CountryField', [], {'max_length': '2'}),\n 'publisher_name': ('django.db.models.fields.CharField', [], {'max_length': '256'}),\n 'publisher_state': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'scielo_issn': ('django.db.models.fields.CharField', [], {'max_length': '16'}),\n 'secs_code': ('django.db.models.fields.CharField', [], {'max_length': '64', 'blank': 'True'}),\n 'short_title': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'db_index': 'True'}),\n 'sponsor': ('django.db.models.fields.related.ManyToManyField', [], {'blank': 'True', 'related_name': \"'journal_sponsor'\", 'null': 'True', 'symmetrical': 'False', 'to': \"orm['journalmanager.Sponsor']\"}),\n 'study_areas': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': \"'journals_migration_tmp'\", 'null': 'True', 'to': \"orm['journalmanager.StudyArea']\"}),\n 'subject_categories': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': \"'journals'\", 'null': 'True', 'to': \"orm['journalmanager.SubjectCategory']\"}),\n 'subject_descriptors': ('django.db.models.fields.CharField', [], {'max_length': '1024'}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),\n 'title_iso': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),\n 'twitter_user': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'url_journal': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'url_online_submission': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'use_license': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.UseLicense']\"})\n },\n 'journalmanager.journalmission': {\n 'Meta': {'object_name': 'JournalMission'},\n 'description': ('django.db.models.fields.TextField', [], {}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'missions'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\", 'null': 'True'})\n },\n 'journalmanager.journaltimeline': {\n 'Meta': {'object_name': 'JournalTimeline'},\n 'collection': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Collection']\"}),\n 'created_by': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['auth.User']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'statuses'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'reason': ('django.db.models.fields.TextField', [], {'default': \"''\"}),\n 'since': ('django.db.models.fields.DateTimeField', [], {}),\n 'status': ('django.db.models.fields.CharField', [], {'max_length': '16'})\n },\n 'journalmanager.journaltitle': {\n 'Meta': {'object_name': 'JournalTitle'},\n 'category': ('django.db.models.fields.CharField', [], {'max_length': '128'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'other_titles'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '128'})\n },\n 'journalmanager.language': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Language'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'iso_code': ('django.db.models.fields.CharField', [], {'max_length': '2'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '64'})\n },\n 'journalmanager.membership': {\n 'Meta': {'unique_together': \"(('journal', 'collection'),)\", 'object_name': 'Membership'},\n 'collection': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Collection']\"}),\n 'created_by': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['auth.User']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Journal']\"}),\n 'reason': ('django.db.models.fields.TextField', [], {'default': \"''\", 'blank': 'True'}),\n 'since': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'status': ('django.db.models.fields.CharField', [], {'default': \"'inprogress'\", 'max_length': '16'})\n },\n 'journalmanager.pendedform': {\n 'Meta': {'object_name': 'PendedForm'},\n 'created_at': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'form_hash': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'user': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'pending_forms'\", 'to': \"orm['auth.User']\"}),\n 'view_name': ('django.db.models.fields.CharField', [], {'max_length': '128'})\n },\n 'journalmanager.pendedvalue': {\n 'Meta': {'object_name': 'PendedValue'},\n 'form': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'data'\", 'to': \"orm['journalmanager.PendedForm']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '255'}),\n 'value': ('django.db.models.fields.TextField', [], {})\n },\n 'journalmanager.pressrelease': {\n 'Meta': {'object_name': 'PressRelease'},\n 'doi': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'})\n },\n 'journalmanager.pressreleasearticle': {\n 'Meta': {'object_name': 'PressReleaseArticle'},\n 'article_pid': ('django.db.models.fields.CharField', [], {'max_length': '32', 'db_index': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'press_release': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'articles'\", 'to': \"orm['journalmanager.PressRelease']\"})\n },\n 'journalmanager.pressreleasetranslation': {\n 'Meta': {'object_name': 'PressReleaseTranslation'},\n 'content': ('django.db.models.fields.TextField', [], {}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\"}),\n 'press_release': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'translations'\", 'to': \"orm['journalmanager.PressRelease']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '128'})\n },\n 'journalmanager.regularpressrelease': {\n 'Meta': {'object_name': 'RegularPressRelease', '_ormbases': ['journalmanager.PressRelease']},\n 'issue': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'press_releases'\", 'to': \"orm['journalmanager.Issue']\"}),\n 'pressrelease_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['journalmanager.PressRelease']\", 'unique': 'True', 'primary_key': 'True'})\n },\n 'journalmanager.section': {\n 'Meta': {'ordering': \"('id',)\", 'object_name': 'Section'},\n 'code': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '21', 'blank': 'True'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Journal']\"}),\n 'legacy_code': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'})\n },\n 'journalmanager.sectiontitle': {\n 'Meta': {'ordering': \"['title']\", 'object_name': 'SectionTitle'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\"}),\n 'section': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'titles'\", 'to': \"orm['journalmanager.Section']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '256'})\n },\n 'journalmanager.sponsor': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Sponsor', '_ormbases': ['journalmanager.Institution']},\n 'collections': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Collection']\", 'symmetrical': 'False'}),\n 'institution_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['journalmanager.Institution']\", 'unique': 'True', 'primary_key': 'True'})\n },\n 'journalmanager.studyarea': {\n 'Meta': {'object_name': 'StudyArea'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'study_area': ('django.db.models.fields.CharField', [], {'max_length': '256'})\n },\n 'journalmanager.subjectcategory': {\n 'Meta': {'object_name': 'SubjectCategory'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'term': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'})\n },\n 'journalmanager.translateddata': {\n 'Meta': {'object_name': 'TranslatedData'},\n 'field': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'model': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'translation': ('django.db.models.fields.CharField', [], {'max_length': '512', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.uselicense': {\n 'Meta': {'ordering': \"['license_code']\", 'object_name': 'UseLicense'},\n 'disclaimer': ('django.db.models.fields.TextField', [], {'max_length': '512', 'null': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_default': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'license_code': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '64'}),\n 'reference_url': ('django.db.models.fields.URLField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.usercollections': {\n 'Meta': {'unique_together': \"(('user', 'collection'),)\", 'object_name': 'UserCollections'},\n 'collection': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Collection']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_default': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_manager': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'user': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['auth.User']\"})\n },\n 'journalmanager.userprofile': {\n 'Meta': {'object_name': 'UserProfile'},\n 'email_notifications': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'tz': ('django.db.models.fields.CharField', [], {'default': \"'America/Sao_Paulo'\", 'max_length': '150'}),\n 'user': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['auth.User']\", 'unique': 'True'})\n }\n }\n\n complete_apps = ['journalmanager']\n symmetrical = True", "metadata": "root.Migration", "header": "['module', '___EOS___']", "index": 6 }, { "content": " def forwards(self, orm):\n \"Write your forwards methods here.\"\n # Note: Don't use \"from appname.models import ModelName\".\n # Use orm.ModelName to refer to models in this application,\n # and orm['appname.ModelName'] for models in other applications.\n orm.Journal.objects.filter(init_vol=None).update(init_vol='')", "metadata": "root.Migration.forwards", "header": "['class', 'Migration', '(', 'DataMigration', ')', ':', '___EOS___']", "index": 8 }, { "content": " def backwards(self, orm):\n \"Write your backwards methods here.\"\n orm.Journal.objects.filter(init_vol='').update(init_vol=None)", "metadata": "root.Migration.backwards", "header": "['class', 'Migration', '(', 'DataMigration', ')', ':', '___EOS___']", "index": 15 } ]	[ { "span": "from south.utils import datetime_utils as datetime", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 50 }, { "span": "from south.db import db", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 23 }, { "span": "from django.db import models", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 28 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "--", " ", "codi", "ng", ":", " ", "utf", "-", "8", " ", "--", "_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "south_", "._", "utils_", "import_", "datetime", "\\u", "utils_", "as_", "datetime_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "south_", 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Unused import	lsaffre/lino/lino/test_apps/properties/models.py	[ { "content": "\"\"\"\nModule `lino_xl.lib.properties`\n-------------------------------\n\nImagine that we are doing a study about alimentary habits. We observe a \ndefined series of properties on the people who participate in our study.\nHere are the properties that we are going to observe::\n\n\n >>> weight = properties.INT.create_property(name='weight')\n >>> weight.save()\n \n >>> married = properties.BOOL.create_property(name='married')\n >>> married.save()\n \n >>> favdish = properties.CHAR.create_property(name='favdish',label='favorite dish')\n >>> favdish.save()\n >>> favdish.create_value(\"Cookies\").save()\n >>> v = favdish.create_value(\"Fish\").save()\n >>> favdish.create_value(\"Meat\").save()\n >>> favdish.create_value(\"Vegetables\").save()\n\n \nNow we have setup the properties. Let's have a look at this metadata::\n \n >>> print favdish.choices_list()\n [u'Cookies', u'Fish', u'Meat', u'Vegetables']\n >>> qs = properties.Property.objects.all()\n >>> [\"%s (%s)\" % (p.name,','.join(map(unicode,p.choices_list()))) for p in qs]\n [u'weight ()', u'married (True,False)', u'favdish (Cookies,Fish,Meat,Vegetables)']\n \nPropValuesByOwner is a report that cannot be rendered into a normal grid because the 'value' column has variable data type, but it's render_to_dict() method is used to fill an `Ext.grid.PropertyGrid`:\n\n >>> properties.PropValuesByOwner().request(master=Person).render_to_dict()\n {'count': 3, 'rows': [{'name': u'favdish', 'value': ''}, {'name': u'married', 'value': None}, {'name': u'weight', 'value': None}], 'title': u'Properties for persons'}\n \n \nHere are the people we are going to analyze::\n\n >>> chris = Person(name='Chris')\n >>> chris.save()\n >>> fred = Person(name='Fred')\n >>> fred.save()\n >>> vera = Person(name='Vera')\n >>> vera.save()\n >>> mary = Person(name='Mary')\n >>> mary.save()\n \nNow we are ready to fill in some real data. Chris, Fred and Vera \nanswered together to each question. First we asked them \"What's \nyour weight?\", and they answered:\n \n >>> weight.set_value_for(chris,70)\n >>> weight.set_value_for(fred,110)\n >>> weight.set_value_for(vera,60)\n \nWhen asked whether they were married, they answered:\n \n >>> married.set_value_for(chris,True)\n >>> married.set_value_for(fred,False)\n >>> married.set_value_for(vera,True)\n\nAnd about their favourite dish they answered:\n \n >>> favdish.set_value_for(chris,'Cookies')\n >>> favdish.set_value_for(fred,'Fish')\n >>> favdish.set_value_for(vera,'Vegetables')\n\nMary came later. She answered all questions at once, which we can enter \nin one line of code:\n \n >>> properties.set_value_for(mary,married=True,favdish='Meat')\n \nNote that Mary didn't know her weight.\n\nTo see the property values of a person, we can use a manual query...\n\n >>> qs = properties.PropValue.objects.filter(owner_id=fred.pk).order_by('prop__name')\n >>> [v.by_owner() for v in qs]\n [u'favdish: Fish', u'married: False', u'weight: 110']\n \n... or use the `PropValuesByOwner` report:\n\n >>> properties.PropValuesByOwner().request(master_instance=fred).render_to_dict()\n {'count': 3, 'rows': [{'name': u'favdish', 'value': u'Fish'}, {'name': u'married', 'value': False}, {'name': u'weight', 'value': 110}], 'title': u'Properties for Fred'}\n \nNote how properties.PropValuesByOwner also returns 3 rows for Mary although we don't know her weight:\n \n >>> properties.PropValuesByOwner().request(master_instance=mary).render_to_dict()\n {'count': 3, 'rows': [{'name': u'favdish', 'value': u'Meat'}, {'name': u'married', 'value': True}, {'name': u'weight', 'value': None}], 'title': u'Properties for Mary'}\n \nQuery by property:\n\n >>> qs = properties.PropValue.objects.filter(prop=weight) \n >>> [v.by_property() for v in qs]\n [u'Chris: 70', u'Fred: 110', u'Vera: 60']\n \n >>> qs = weight.values_query().order_by('value')\n >>> [v.by_property() for v in qs]\n [u'Vera: 60', u'Chris: 70', u'Fred: 110']\n \n \n`Report.as_text()`, is currently broken:\n\n >>> #properties.PropValuesByOwner().as_text(fred)\n\n\n\"\"\"\n\n\nfrom django.db import models\nfrom django.contrib.contenttypes.models import ContentType\nfrom django.contrib.contenttypes import generic\nfrom lino_xl.lib.properties import models as properties\nfrom django.utils.encoding import python_2_unicode_compatible\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "@python_2_unicode_compatible\nclass Person(models.Model):\n name = models.CharField(max_length=20)\n properties = generic.GenericRelation(properties.Property)\n", "metadata": "root.Person", "header": "['module', '___EOS___']", "index": 117 }, { "content": " def __str__(self):\n return self.name", "metadata": "root.Person.__str__", "header": "['class', 'Person', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 122 } ]	[ { "span": "from django.contrib.contenttypes.models import ContentType", "start_line": 111, "start_column": 0, "end_line": 111, "end_column": 58 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\"\"\"", "\\", "10", ";", "Modul", "e", " ", "`", "lino", "\\u", "xl", ".", "lib", ".", "proper", "ties", "`", "\\", "10", ";", "--------------", "--------------", "---", "\\", "10", ";", "\\", "10", ";", "Imagin", "e", " ", "tha", "t", " ", "we", " ", "are", " ", "doi", "ng", " ", "a", " ", "stud", "y", " ", "abo", "ut", " ", "ali", "menta", "ry", " ", "habit", "s", ".", " ", "We", " ", "observe", " ", "a", " ", "\\", "10", 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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Unused import	brosner/django-wikiapp/wiki/feeds.py	[ { "content": "from django.contrib.syndication.feeds import Feed, FeedDoesNotExist\nfrom django.utils.feedgenerator import Atom1Feed\nfrom django.contrib.contenttypes.models import ContentType\nfrom django.core.exceptions import ObjectDoesNotExist\nfrom django.core.urlresolvers import reverse\nfrom django.utils.translation import ugettext_lazy as _\nfrom django.http import Http404\nfrom django.shortcuts import get_object_or_404, render_to_response\nfrom django.template import Context, Template\nfrom django.template.loader import get_template\nfrom wiki.models import ChangeSet, Article\nfrom wiki.utils import get_ct\nimport atomformat as atom\n\nALL_ARTICLES = Article.objects.all()\nALL_CHANGES = ChangeSet.objects.all()\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class RssHistoryFeed(Feed):\n\n title = 'History for all articles'\n link = '/wiki/'\n description = 'Recent changes in wiki'\n\n\n ", "metadata": "root.RssHistoryFeed", "header": "['module', '___EOS___']", "index": 17 }, { "content": " def __init__(self, request,\n group_slug=None, bridge=None,\n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES, \n extra_context=None, \n title_template = u'feeds/history_title.html', \n description_template = u'feeds/history_description.html', \n args, kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.changes_qs = changes_qs.filter(article__content_type=get_ct(group), \n article__object_id=group.id)\n else:\n self.changes_qs = changes_qs\n\n self.title_template = title_template\n self.description_template = description_template\n super(RssHistoryFeed, self).__init__('', request)", "metadata": "root.RssHistoryFeed.__init__", "header": "['class', 'RssHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 23 }, { "content": " def items(self):\n return self.changes_qs.order_by('-modified')[:30]", "metadata": "root.RssHistoryFeed.items", "header": "['class', 'RssHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 45 }, { "content": " def item_pubdate(self, item):\n \"\"\"\n Return the item's pubdate. It's this modified date\n \"\"\"\n return item.modified", "metadata": "root.RssHistoryFeed.item_pubdate", "header": "['class', 'RssHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 48 }, { "content": "class AtomHistoryFeed(atom.Feed):\n\n feed_title = 'History for all articles'\n feed_subtitle = 'Recent changes in wiki'\n\n\n\n\n\n\n\n\n", "metadata": "root.AtomHistoryFeed", "header": "['module', '___EOS___']", "index": 55 }, { "content": " def __init__(self, request,\n group_slug=None, bridge=None, \n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES, \n extra_context=None, \n title_template = u'feeds/history_title.html', \n description_template = u'feeds/history_description.html', \n args, *kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.changes_qs = changes_qs.filter(article__content_type=get_ct(group), \n article__object_id=group.id)\n else:\n self.changes_qs = changes_qs\n\n self.title_template = get_template(title_template)\n self.description_template = get_template(description_template)\n super(AtomHistoryFeed, self).__init__('', request)", "metadata": "root.AtomHistoryFeed.__init__", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 60 }, { "content": " def feed_id(self):\n return \"feed_id\"", "metadata": "root.AtomHistoryFeed.feed_id", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 82 }, { "content": " def items(self):\n return self.changes_qs.order_by('-modified')[:30]", "metadata": "root.AtomHistoryFeed.items", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 85 }, { "content": " def item_id(self, item):\n return \"%s\" % item.id", "metadata": "root.AtomHistoryFeed.item_id", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 88 }, { "content": " def item_title(self, item):\n c = Context({'obj' : item})\n return self.title_template.render(c)", "metadata": "root.AtomHistoryFeed.item_title", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 91 }, { "content": " def item_updated(self, item):\n return item.modified", "metadata": "root.AtomHistoryFeed.item_updated", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 95 }, { "content": " def item_authors(self, item):\n if item.is_anonymous_change():\n return [{'name' : _('Anonimous')},]\n return [{'name' : item.editor.username},]", "metadata": "root.AtomHistoryFeed.item_authors", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 98 }, { "content": " def item_links(self, item):\n return [{'href': item.get_absolute_url()}, ]", "metadata": "root.AtomHistoryFeed.item_links", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 103 }, { "content": " def item_content(self, item):\n c = Context({'obj' : item,})\n return ({'type': 'html'}, self.description_template.render(c))", "metadata": "root.AtomHistoryFeed.item_content", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 106 }, { "content": "class RssArticleHistoryFeed(Feed):\n\n\n\n\n\n\n", "metadata": "root.RssArticleHistoryFeed", "header": "['module', '___EOS___']", "index": 111 }, { "content": " def __init__(self, title, request, \n group_slug=None, bridge=None,\n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES,\n extra_context=None,\n title_template = u'feeds/history_title.html',\n description_template = u'feeds/history_description.html',\n args, *kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.article_qs = article_qs.filter(content_type=get_ct(group),\n object_id=group.id)\n else:\n self.article_qs = article_qs\n\n self.title_template = title_template\n self.description_template = description_template\n super(RssArticleHistoryFeed, self).__init__(title, request)", "metadata": "root.RssArticleHistoryFeed.__init__", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 113 }, { "content": " def get_object(self, bits):\n return self.article_qs.get(title = bits[0])", "metadata": "root.RssArticleHistoryFeed.get_object", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 135 }, { "content": " def title(self, obj):\n return \"History for: %s \" % obj.title", "metadata": "root.RssArticleHistoryFeed.title", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 138 }, { "content": " def link(self, obj):\n if not obj:\n raise FeedDoesNotExist\n return obj.get_absolute_url()", "metadata": "root.RssArticleHistoryFeed.link", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 141 }, { "content": " def description(self, obj):\n return \"Recent changes in %s\" % obj.title", "metadata": "root.RssArticleHistoryFeed.description", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 146 }, { "content": " def items(self, obj):\n return ChangeSet.objects.filter(article__id__exact=obj.id).order_by('-modified')[:30]", "metadata": "root.RssArticleHistoryFeed.items", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 149 }, { "content": " def item_pubdate(self, item):\n \"\"\"\n Returns the modified date\n \"\"\"\n return item.modified", "metadata": "root.RssArticleHistoryFeed.item_pubdate", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 152 }, { "content": "class AtomArticleHistoryFeed(atom.Feed):\n \n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.AtomArticleHistoryFeed", "header": "['module', '___EOS___']", "index": 159 }, { "content": " def __init__(self, title, request, \n group_slug=None, bridge=None,\n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES,\n extra_context=None,\n title_template = u'feeds/history_title.html',\n description_template = u'feeds/history_description.html',\n args, **kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.article_qs = article_qs.filter(content_type=get_ct(group),\n object_id=group.id)\n else:\n self.article_qs = article_qs\n\n self.title_template = get_template(title_template)\n self.description_template = get_template(description_template)\n super(AtomArticleHistoryFeed, self).__init__('', request)", "metadata": "root.AtomArticleHistoryFeed.__init__", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 161 }, { "content": " def get_object(self, bits):\n return self.article_qs.get(title = bits[0])", "metadata": "root.AtomArticleHistoryFeed.get_object", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 183 }, { "content": " def feed_title(self, obj):\n return \"History for: %s \" % obj.title", "metadata": "root.AtomArticleHistoryFeed.feed_title", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 186 }, { "content": " def feed_subtitle(self, obj):\n return \"Recent changes in %s\" % obj.title", "metadata": "root.AtomArticleHistoryFeed.feed_subtitle", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 189 }, { "content": " def feed_id(self):\n return \"feed_id\"", "metadata": "root.AtomArticleHistoryFeed.feed_id", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 192 }, { "content": " def items(self, obj):\n return ChangeSet.objects.filter(article__id__exact=obj.id).order_by('-modified')[:30]", "metadata": "root.AtomArticleHistoryFeed.items", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 195 }, { "content": " def item_id(self, item):\n return \"%s\" % item.id", "metadata": "root.AtomArticleHistoryFeed.item_id", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 198 }, { "content": " def item_title(self, item):\n c = Context({'obj' : item})\n return self.title_template.render(c)", "metadata": "root.AtomArticleHistoryFeed.item_title", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 201 }, { "content": " def item_updated(self, item):\n return item.modified", "metadata": "root.AtomArticleHistoryFeed.item_updated", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 205 }, { "content": " def item_authors(self, item):\n if item.is_anonymous_change():\n return [{'name' : _('Anonimous')},]\n return [{'name' : item.editor.username},]", "metadata": "root.AtomArticleHistoryFeed.item_authors", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 208 }, { "content": " def item_links(self, item):\n return [{'href': item.get_absolute_url()},]", "metadata": "root.AtomArticleHistoryFeed.item_links", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 213 }, { "content": " def item_content(self, item):\n c = Context({'obj' : item, })\n return ({'type': 'html'}, self.description_template.render(c))", "metadata": "root.AtomArticleHistoryFeed.item_content", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 216 } ]	[ { "span": "from django.utils.feedgenerator import Atom1Feed", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 48 }, { "span": "from django.contrib.contenttypes.models import ContentType", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 58 }, { "span": "from django.core.urlresolvers import reverse", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 44 }, { "span": "from django.shortcuts import get_object_or_404, render_to_response", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 66 }, { "span": "from django.template import Context, Template", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 45 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "from_", "django_", "._", "contrib_", "._", "syn", "dicat", "ion_", "._", "feeds_", "import_", "Feed_", ",_", "Feed", "Do", "es", "Not", "Exist_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "django_", "._", "utils_", "._", "feed", "generator_", "import_", "Atom", "1", "Feed_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", 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Testing equality to None	OpenBCI/OpenBCI_Python/user.py	[ { "content": "#!/usr/bin/env python2.7\nimport argparse # new in Python2.7\nimport os\nimport time\nimport string\nimport atexit\nimport threading\nimport logging\nimport sys\n\nfrom yapsy.PluginManager import PluginManager\n\n# Load the plugins from the plugin directory.\nmanager = PluginManager()\nmanager.setPluginPlaces([\"plugins\"])\nmanager.collectPlugins()\n\nif __name__ == '__main__':\n\n print (\" USER.py\")\n parser = argparse.ArgumentParser(description=\"OpenBCI 'user'\")\n parser.add_argument('--board', default=3, type=int)\n parser.add_argument('-l', '--list', action='store_true',\n help=\"List available plugins.\")\n parser.add_argument('-i', '--info', metavar='PLUGIN',\n help=\"Show more information about a plugin.\")\n parser.add_argument('-p', '--port',\n help=\"Port to connect to OpenBCI Dongle \" +\n \"( ex /dev/ttyUSB0 or /dev/tty.usbserial-* )\")\n # baud rate is not currently used\n parser.add_argument('-b', '--baud', default=115200, type=int,\n help=\"Baud rate (not currently used)\")\n parser.add_argument('--no-filtering', dest='filtering',\n action='store_false',\n help=\"Disable notch filtering\")\n parser.set_defaults(filtering=True)\n parser.add_argument('-d', '--daisy', dest='daisy',\n action='store_true',\n help=\"Force daisy mode (beta feature)\")\n # first argument: plugin name, then parameters for plugin\n parser.add_argument('-a', '--add', metavar=('PLUGIN', 'PARAM'),\n action='append', nargs='+',\n help=\"Select which plugins to activate and set parameters.\")\n parser.add_argument('--log', dest='log', action='store_true',\n help=\"Log program\")\n parser.set_defaults(daisy=False, log=False)\n\n args = parser.parse_args()\n\n if not (args.port or args.list or args.info):\n parser.error('No action requested. Use `--port serial_port` to connect to the bord; `--list` to show available plugins or `--info [plugin_name]` to get more information.')\n\n if args.board == 3:\n print (\"user.py: open_bci_v3...\")\n import open_bci_v3 as bci\n elif args.board == 4:\n print (\"user.py: open_bci_v_ganglion...\")\n import open_bci_v_ganglion as bci\n else:\n warn('Board type not recognized')\n\n # Print list of available plugins and exit\n if args.list:\n print (\"Available plugins:\")\n for plugin in manager.getAllPlugins():\n print (\"\\t-\", plugin.name)\n exit()\n\n # User wants more info about a plugin...\n if args.info:\n plugin = manager.getPluginByName(args.info)\n if plugin == None:\n # eg: if an import fail inside a plugin, yapsy skip it\n print (\"Error: [\", args.info, \"] not found or could not be loaded. Check name and requirements.\")\n else:\n print (plugin.description)\n plugin.plugin_object.show_help()\n exit()\n\n print (\"\\n------------SETTINGS-------------\")\n print (\"Notch filtering:\", args.filtering)\n\n # Logging\n if args.log:\n print (\"Logging Enabled: \" + str(args.log))\n logging.basicConfig(filename=\"OBCI.log\", format='%(asctime)s - %(levelname)s : %(message)s', level=logging.DEBUG)\n logging.getLogger('yapsy').setLevel(logging.DEBUG)\n logging.info('---------LOG START-------------')\n logging.info(args)\n else:\n print (\"user.py: Logging Disabled.\")\n\n print (\"\\n-------INSTANTIATING BOARD-------\")\n board = bci.OpenBCIBoard(port=args.port,\n daisy=args.daisy,\n filter_data=args.filtering,\n scaled_output=True,\n log=args.log)\n\n # Info about effective number of channels and sampling rate\n if board.daisy:\n print (\"Force daisy mode:\")\n else:\n print (\"No daisy:\")\n print (board.getNbEEGChannels(), \"EEG channels and\", board.getNbAUXChannels(), \"AUX channels at\", board.getSampleRate(), \"Hz.\")\n\n print (\"\\n------------PLUGINS--------------\")\n # Loop round the plugins and print their names.\n print (\"Found plugins:\")\n for plugin in manager.getAllPlugins():\n print (\"[\", plugin.name, \"]\")\n print()\n\n\n # Fetch plugins, try to activate them, add to the list if OK\n plug_list = []\n callback_list = []\n if args.add:\n for plug_candidate in args.add:\n # first value: plugin name, then optional arguments\n plug_name = plug_candidate[0]\n plug_args = plug_candidate[1:]\n # Try to find name\n plug = manager.getPluginByName(plug_name)\n if plug == None:\n # eg: if an import fail inside a plugin, yapsy skip it\n print (\"Error: [\", plug_name, \"] not found or could not be loaded. Check name and requirements.\")\n else:\n print (\"\\nActivating [\", plug_name, \"] plugin...\")\n if not plug.plugin_object.pre_activate(plug_args, sample_rate=board.getSampleRate(), eeg_channels=board.getNbEEGChannels(), aux_channels=board.getNbAUXChannels()):\n print (\"Error while activating [\", plug_name, \"], check output for more info.\")\n else:\n print (\"Plugin [\", plug_name, \"] added to the list\")\n plug_list.append(plug.plugin_object)\n callback_list.append(plug.plugin_object)\n\n if len(plug_list) == 0:\n print (\"WARNING: no plugin selected, you will only be able to communicate with the board.\")\n fun = None\n else:\n fun = callback_list\n\n\n atexit.register(cleanUp)\n\n print (\"--------------INFO---------------\")\n print (\"User serial interface enabled...\\n\\\nView command map at http://docs.openbci.com.\\n\\\nType /start to run -- and /stop before issuing new commands afterwards.\\n\\\nType /exit to exit. \\n\\\nBoard outputs are automatically printed as: \\n\\\n% <tab> message\\n\\\n$$$ signals end of message\")\n\n print(\"\\n-------------BEGIN---------------\")\n # Init board state\n # s: stop board streaming; v: soft reset of the 32-bit board (no effect with 8bit board)\n s = 'sv'\n # Tell the board to enable or not daisy module\n if board.daisy:\n s = s + 'C'\n else:\n s = s + 'c'\n # d: Channels settings back to default\n s = s + 'd'\n\n while(s != \"/exit\"):\n # Send char and wait for registers to set\n if (not s):\n pass\n elif(\"help\" in s):\n print (\"View command map at: \\\nhttp://docs.openbci.com/software/01-OpenBCI_SDK.\\n\\\nFor user interface: read README or view \\\nhttps://github.com/OpenBCI/OpenBCI_Python\")\n\n elif board.streaming and s != \"/stop\":\n print (\"Error: the board is currently streaming data, please type '/stop' before issuing new commands.\")\n else:\n # read silently incoming packet if set (used when stream is stopped)\n flush = False\n\n if('/' == s[0]):\n s = s[1:]\n rec = False # current command is recognized or fot\n\n if(\"T:\" in s):\n lapse = int(s[string.find(s, \"T:\")+2:])\n rec = True\n elif(\"t:\" in s):\n lapse = int(s[string.find(s, \"t:\")+2:])\n rec = True\n else:\n lapse = -1\n\n if(\"start\" in s):\n if(fun != None):\n # start streaming in a separate thread so we could always send commands in here\n boardThread = threading.Thread(target=board.start_streaming, args=(fun, lapse))\n boardThread.daemon = True # will stop on exit\n try:\n boardThread.start()\n except:\n raise\n else:\n print (\"No function loaded\")\n rec = True\n elif('test' in s):\n test = int(s[s.find(\"test\")+4:])\n board.test_signal(test)\n rec = True\n elif('stop' in s):\n board.stop()\n rec = True\n flush = True\n if rec == False:\n print(\"Command not recognized...\")\n\n elif s:\n for c in s:\n if sys.hexversion > 0x03000000:\n board.ser.write(bytes(c, 'utf-8'))\n else:\n board.ser.write(bytes(c))\n time.sleep(0.100)\n\n line = ''\n time.sleep(0.1) #Wait to see if the board has anything to report\n while board.ser.inWaiting():\n c = board.ser.read().decode('utf-8')\n line += c\n time.sleep(0.001)\n if (c == '\\n') and not flush:\n print('%\\t'+line[:-1])\n line = ''\n\n if not flush:\n print(line)\n\n # Take user input\n #s = input('--> ')\n if sys.hexversion > 0x03000000:\n s = input('--> ')\n else:\n s = raw_input('--> ')\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]	[ { "span": "plugin == None:", "start_line": 71, "start_column": 11, "end_line": 71, "end_column": 25 }, { "span": "plug == None:", "start_line": 124, "start_column": 15, "end_line": 124, "end_column": 27 } ]	[]	1	true	[ "[CLS]_", "Test", "ing_", "equality", "_", "to_", "None_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#!", "/", "usr", "/", "bin", "/", "env", " ", "python", "2.7", "_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "argparse_", "#", " ", "new", " ", "in", " ", "Pyth", "on2", ".7_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "os_", "\\u\\u\\uNEWLINE\\u\\u\\u_", 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Unused import	neurodata/ndstore/.old-EM-connectome/ingest/logan/catmaid.py	[ { "content": "# Copyright 2014 Open Connectome Project (http://openconnecto.me)\n# \n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n# \n# http://www.apache.org/licenses/LICENSE-2.0\n# \n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport argparse\nimport sys\nimport os\n\nimport numpy as np\nfrom PIL import Image\nimport urllib, urllib2\nimport cStringIO\nimport collections\nimport zlib\n\n\"\"\"\n Make a CATMAID image stack from LIF files.\n\"\"\"\n\n\n\nif __name__ == \"__main__\":\n main()\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def main():\n\n parser = argparse.ArgumentParser(description='Build a CATMAID stack out of LIF raw export from Fiji')\n parser.add_argument('inputpath', action=\"store\", help='Directory with annotation PNG files.')\n parser.add_argument('outputpath', action=\"store\", help='Directory to store the tiles.')\n parser.add_argument('slices', action=\"store\", type=int)\n parser.add_argument('ximagesize', action=\"store\", type=int)\n parser.add_argument('yimagesize', action=\"store\", type=int)\n parser.add_argument('zoomlevels', action=\"store\", type=int, default=512)\n parser.add_argument('--color', action=\"store\", default ='R', help='One of RGBCMY. Default R' )\n parser.add_argument('--tilesize', action=\"store\", type=int, default=512)\n\n\n result = parser.parse_args()\n\n ximgsz = result.ximagesize\n yimgsz = result.yimagesize\n tilesz = result.tilesize\n zoomlevels = result.zoomlevels\n slices = result.slices\n\n # make the directory hierarchy\n if not os.path.exists ( os.path.abspath(result.outputpath) ):\n try:\n os.mkdir(os.path.abspath(result.outputpath))\n except:\n print \"Failed to create target directory\"\n elif not os.path.isdir(os.path.abspath(result.outputpath)):\n print \"Target directory is not a directory.\"\n sys.exit(-1)\n\n # and the zoom levels\n for l in range(zoomlevels):\n if not os.path.exists(os.path.abspath('%s/%s/'%(result.outputpath,l))):\n try:\n os.mkdir(os.path.abspath('%s/%s/'%(result.outputpath,l)))\n except:\n print \"Failed to create resolutions directories\"\n\n for sl in range (slices):\n for l in range(zoomlevels):\n\n # directory for each slices\n if not os.path.exists(os.path.abspath('%s/%s/%s'%(result.outputpath,l,sl))):\n try:\n os.mkdir(os.path.abspath('%s/%s/%s'%(result.outputpath,l,sl))) \n except:\n print \"Failed to create slice directories\"\n\n # raw data\n filenm = result.inputpath + '/' + '{:0>4}'.format(sl) + '.raw'\n print \"Opening filenm\" + filenm\n\n # Compute how many tiles\n xtiles = (ximgsz-1)/(tilesz(2l))+1\n ytiles = (yimgsz-1)/(tilesz(2*l))+1\n xdim = xtilestilesz(2l)\n ydim = ytilestilesz(2l)\n\n # add the image data into the tile data\n tiledata = np.zeros ( [ydim,xdim], dtype=np.uint32 )\n imgdata = np.uint32(np.fromfile ( filenm, dtype=np.uint8 ).reshape([yimgsz,ximgsz]))\n\n # Pick a channel color\n if result.color == 'R':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = imgdata + 0xFF000000\n elif result.color == 'G':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = np.left_shift(imgdata,8) + 0xFF000000\n elif result.color == 'B':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = np.left_shift(imgdata,16) + 0xFF000000\n elif result.color == 'C':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = np.left_shift(imgdata,16) + np.left_shift(imgdata,8) + 0xFF000000\n elif result.color == 'M':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = imgdata + np.left_shift(imgdata,16) + 0xFF000000\n elif result.color == 'Y':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = imgdata + np.left_shift(imgdata,8) + 0xFF000000\n else:\n print \"Unknown color\"\n sys.exit(-1)\n\n # Write out the tiles\n for y in range(ytiles):\n for x in range(xtiles):\n outimg = Image.frombuffer ( 'RGBA', (tilesz(2*l),tilesz(2*l)), tiledata[ytilesz(2l):(y+1)tilesz(2l),xtilesz(2l):(x+1)tilesz(2l)].flatten(), 'raw', 'RGBA', 0, 1 )\n# outimg = Image.frombuffer ( 'L', (tilesz(2l),tilesz(2l)), tiledata[ytilesz(2*l):(y+1)tilesz(2l),xtilesz(2l):(x+1)tilesz(2*l)].flatten(), 'raw', 'L', 0, 1 )\n outimg = outimg.resize ([tilesz,tilesz])\n outimg.save(os.path.abspath('%s/%s/%s/%s_%s.png'%(result.outputpath,l,sl,y,x)))\n print '%s/%s/%s/%s_%s.png'%(result.outputpath,l,sl,y,x)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 29 } ]	[ { "span": "import urllib, urllib2", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 22 }, { "span": "import cStringIO", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 16 }, { "span": "import collections", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 18 }, { "span": "import zlib", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 11 } ]	[]	1	false	[ "[CLS]_", "Un", "used_", "import_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "#", " ", "Copy", "right", " ", "2014", " ", "Open", " ", "Connect", "ome", " ", "Project", " ", "(", "http", "://", "openco", "nnect", "o", ".", "me", ")_", "\\u\\u\\uNL\\u\\u\\u_", "#", " _", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "License", "d", " ", "under", " ", 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Unused local variable	boldport/pcbmode/pcbmode/utils/bom.py	[ { "content": "def make_bom(quantity=None):\n \"\"\"\n \n \"\"\"\n\n def natural_key(string_):\n \"\"\"See http://www.codinghorror.com/blog/archives/001018.html\"\"\"\n return [int(s) if s.isdigit() else s for s in re.split(r'(\\d+)', string_)]\n\n\n \n dnp_text = 'Do not populate'\n uncateg_text = 'Uncategorised'\n\n components_dict = config.brd['components']\n \n bom_dict = {}\n\n for refdef in components_dict:\n\n description = ''\n\n try:\n place = components_dict[refdef]['place']\n except:\n place = True\n\n try:\n ignore = components_dict[refdef]['bom']['ignore']\n except:\n ignore = False\n\n # If component isn't placed, ignore it\n if place == True and ignore == False:\n\n # Get footprint definition and shapes\n try:\n footprint_name = components_dict[refdef]['footprint']\n except:\n msg.error(\"Cannot find a 'footprint' name for refdef %s.\" % refdef)\n \n # Open footprint file\n fname = os.path.join(config.cfg['base-dir'],\n config.cfg['locations']['components'],\n footprint_name + '.json')\n footprint_dict = utils.dictFromJsonFile(fname)\n \n info_dict = footprint_dict.get('info') or {}\n \n try: \n comp_bom_dict = components_dict[refdef]['bom']\n except:\n comp_bom_dict = {}\n \n try: \n fp_bom_dict = footprint_dict['info']\n except:\n fp_bom_dict = {}\n \n \n # Override component BoM info on top of footprint info\n for key in comp_bom_dict:\n fp_bom_dict[key] = comp_bom_dict[key]\n\n description = fp_bom_dict.get('description') or uncateg_text\n\n try:\n dnp = components_dict[refdef]['bom']['dnp']\n except:\n dnp = False \n\n if dnp == True:\n description = dnp_text\n \n if description not in bom_dict:\n bom_dict[description] = fp_bom_dict\n bom_dict[description]['refdefs'] = []\n bom_dict[description]['refdefs'].append(refdef)\n \n bom_dict[description]['placement'] = components_dict[refdef]['layer']\n \n\n try:\n bom_content = config.brd['bom']\n except:\n bom_content = [\n {\n \"field\": \"line-item\",\n \"text\": \"#\"\n },\n {\n \"field\": \"quantity\",\n \"text\": \"Qty\"\n },\n {\n \"field\": \"designators\",\n \"text\": \"Designators\"\n }, \n {\n \"field\": \"description\",\n \"text\": \"Description\"\n }, \n {\n \"field\": \"package\",\n \"text\": \"Package\"\n }, \n {\n \"field\": \"manufacturer\",\n \"text\": \"Manufacturer\"\n }, \n {\n \"field\": \"part-number\",\n \"text\": \"Part #\"\n },\n {\n \"field\": \"suppliers\",\n \"text\": \"Suppliers\",\n \"suppliers\": \n [\n {\n \"field\": \"farnell\",\n \"text\": \"Farnell #\",\n \"search-url\": \"http://uk.farnell.com/catalog/Search?st=\"\n },\n { \n \"field\": \"mouser\",\n \"text\": \"Mouser #\",\n \"search-url\": \"http://uk.mouser.com/Search/Refine.aspx?Keyword=\"\n },\n {\n \"field\": \"octopart\",\n \"text\": \"Octopart\",\n \"search-url\": \"https://octopart.com/search?q=\"\n }\n ]\n }, \n {\n \"field\": \"placement\",\n \"text\": \"Layer\"\n }, \n {\n \"field\": \"notes\",\n \"text\": \"Notes\"\n }\n ]\n\n\n\n # Set up the BoM file name\n bom_path = os.path.join(config.cfg['base-dir'],\n config.cfg['locations']['build'],\n 'bom')\n # Create path if it doesn't exist already\n utils.create_dir(bom_path)\n\n board_name = config.cfg['name']\n board_revision = config.brd['config'].get('rev')\n base_name = \"%s_rev_%s\" % (board_name, board_revision)\n\n bom_html = os.path.join(bom_path, base_name + '_%s.html'% 'bom')\n bom_csv = os.path.join(bom_path, base_name + '_%s.csv'% 'bom')\n\n\n html = []\n csv = []\n\n\n html.append('<html>')\n html.append('<style type=\"text/css\">')\n try:\n css = config.stl['layout']['bom']['css']\n except:\n css = []\n for line in css:\n html.append(line)\n html.append('</style>')\n html.append('<table class=\"tg\">')\n\n header = []\n for item in bom_content:\n if item['field'] == 'suppliers':\n for supplier in item['suppliers']:\n header.append(\"%s\" % supplier['text'])\n else:\n header.append(\"%s\" % item['text'])\n if item['field'] == 'quantity' and quantity != None:\n header.append(\"@%s\" % quantity)\n\n html.append(' <tr>')\n html.append(' <th class=\"tg-title\" colspan=\"%s\">Bill of materials -- %s rev %s</th>' % (len(header), board_name, board_revision))\n html.append(' </tr>') \n html.append(' <tr>')\n for item in header:\n html.append(' <th class=\"tg-header\">%s</th>' % item)\n html.append(' </tr>')\n \n\n uncateg_content = []\n dnp_content = []\n index = 1\n\n for desc in bom_dict:\n content = []\n for item in bom_content:\n if item['field'] == 'line-item':\n content.append(\"<strong>%s</strong>\" % str(index))\n elif item['field'] == 'suppliers':\n for supplier in item['suppliers']:\n\n try:\n number = bom_dict[desc][item['field']][supplier['field']]\n except:\n number = \"\"\n\n search_url = supplier.get('search-url')\n if search_url != None:\n content.append('<a href=\"%s%s\">%s</a>' % (search_url, number, number))\n else:\n content.append(number)\n\n elif item['field'] == 'quantity':\n units = len(bom_dict[desc]['refdefs'])\n content.append(\"%s\" % (str(units)))\n if quantity != None:\n content.append(\"%s\" % (str(units*int(quantity))))\n elif item['field'] == 'designators':\n # Natural/human sort the list of designators\n sorted_list = sorted(bom_dict[desc]['refdefs'], key=natural_key)\n\n refdefs = ''\n for refdef in sorted_list[:-1]:\n refdefs += \"%s \" % refdef\n refdefs += \"%s\" % sorted_list[-1]\n content.append(\"%s \" % refdefs)\n elif item['field'] == 'description':\n content.append(\"%s \" % desc)\n else:\n try:\n content.append(bom_dict[desc][item['field']])\n except:\n content.append(\"\")\n\n if desc == uncateg_text:\n uncateg_content = content\n elif desc == dnp_text:\n dnp_content = content\n else:\n html.append(' <tr>')\n for item in content:\n html.append(' <td class=\"tg-item-%s\">%s</td>' % (('odd','even')[index%2==0], item))\n html.append(' </tr>')\n index += 1\n\n\n for content in (dnp_content, uncateg_content):\n html.append(' <tr class=\"tg-skip\">')\n html.append(' </tr>') \n html.append(' <tr>')\n if len(content) > 0:\n content[0] = index\n for item in content:\n html.append(' <td class=\"tg-item-%s\">%s</td>' % (('odd','even')[index%2==0], item))\n html.append(' </tr>')\n index += 1\n\n\n html.append('</table>')\n\n html.append('<p>Generated by <a href=\"http://pcbmode.com\">PCBmodE</a>, an open source PCB design software. PCBmodE was written and is maintained by <a href=\"http://boldport.com\">Boldport</a>, creators of beautifully functional circuits.')\n\n html.append('</html>')\n\n with open(bom_html, \"wb\") as f:\n for line in html:\n f.write(line+'\\n')\n\n \n #print bom_dict", "metadata": "root.make_bom", "header": "['module', '___EOS___']", "index": 22 } ]	[ { "span": "bom_csv ", "start_line": 182, "start_column": 4, "end_line": 182, "end_column": 11 }, { "span": "csv ", "start_line": 186, "start_column": 4, "end_line": 186, "end_column": 7 } ]	[]	1	true	[ "[CLS]_", "Un", "used_", "local_", "variable_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "make", "\\u", "bom", "_", "(_", "quantity_", "=_", "None_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "natur", "al", "\\u", 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Unused import

chromaway/ngcccbase/ngcccbase/tests/test_txcons.py

[ { "content": "#!/usr/bin/env python\n\nimport os\nimport unittest\n\nfrom pycoin.tx.script import opcodes, tools\n\nfrom coloredcoinlib import (OBColorDefinition, ColorSet,\n SimpleColorValue, ColorTarget, InvalidColorIdError,\n UNCOLORED_MARKER, ZeroSelectError)\n\nfrom ngcccbase.asset import AssetDefinition, AdditiveAssetValue, AssetTarget\nfrom ngcccbase.txcons import (InvalidTargetError, InvalidTransformationError, \n InsufficientFundsError, BasicTxSpec,\n SimpleOperationalTxSpec, RawTxSpec,\n TransactionSpecTransformer)\nfrom ngcccbase.pwallet import PersistentWallet\n\n\n\n\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestTxcons(unittest.TestCase):\n\n\n\n\n\n\n\n", "metadata": "root.TestTxcons", "header": "['module', '___EOS___']", "index": 20 }, { "content": " def setUp(self):\n self.path = \":memory:\"\n self.pwallet = PersistentWallet(self.path)\n self.config = {'dw_master_key': 'test', 'testnet': True, 'ccc': {\n 'colordb_path' : self.path}, 'bip0032': False }\n self.pwallet.wallet_config = self.config\n self.pwallet.init_model()\n self.model = self.pwallet.get_model()\n self.colormap = self.model.get_color_map()\n\n self.colordesc0 = \"obc:color0:0:0\"\n self.colordesc1 = \"obc:color1:0:0\"\n self.colordesc2 = \"obc:color2:0:0\"\n\n # add some colordescs\n self.colorid0 = self.colormap.resolve_color_desc(self.colordesc0)\n self.colorid1 = self.colormap.resolve_color_desc(self.colordesc1)\n self.colorid2 = self.colormap.resolve_color_desc(self.colordesc2)\n\n self.colordef0 = OBColorDefinition(\n self.colorid0, {'txhash': 'color0', 'outindex': 0})\n self.colordef1 = OBColorDefinition(\n self.colorid1, {'txhash': 'color1', 'outindex': 0})\n self.colordef2 = OBColorDefinition(\n self.colorid2, {'txhash': 'color2', 'outindex': 0})\n\n self.asset_config = {\n 'monikers': ['blue'],\n 'color_set': [self.colordesc0],\n }\n self.basset_config = {\n 'monikers': ['bitcoin'],\n 'color_set': [''],\n }\n self.asset = AssetDefinition(self.colormap, self.asset_config)\n self.basset = AssetDefinition(self.colormap, self.basset_config)\n self.basic = BasicTxSpec(self.model)\n self.bbasic = BasicTxSpec(self.model)\n\n wam = self.model.get_address_manager()\n self.address0 = wam.get_new_address(self.asset.get_color_set())\n self.addr0 = self.address0.get_address()\n\n self.bcolorset = ColorSet(self.colormap, [''])\n self.baddress = wam.get_new_address(self.bcolorset)\n self.baddr = self.baddress.get_address()\n\n self.assetvalue0 = AdditiveAssetValue(asset=self.asset, value=5)\n self.assetvalue1 = AdditiveAssetValue(asset=self.asset, value=6)\n self.assetvalue2 = AdditiveAssetValue(asset=self.asset, value=7)\n self.bassetvalue = AdditiveAssetValue(asset=self.basset, value=8)\n self.assettarget0 = AssetTarget(self.addr0, self.assetvalue0)\n self.assettarget1 = AssetTarget(self.addr0, self.assetvalue1)\n self.assettarget2 = AssetTarget(self.addr0, self.assetvalue2)\n self.bassettarget = AssetTarget(self.baddr, self.bassetvalue)\n\n self.atargets = [self.assettarget0, self.assettarget1, self.assettarget2]\n\n # add some targets\n self.colorvalue0 = SimpleColorValue(colordef=self.colordef0, value=5)\n self.colortarget0 = ColorTarget(self.addr0, self.colorvalue0)\n self.colorvalue1 = SimpleColorValue(colordef=self.colordef0, value=6)\n self.colortarget1 = ColorTarget(self.addr0, self.colorvalue1)\n self.colorvalue2 = SimpleColorValue(colordef=self.colordef0, value=7)\n self.colortarget2 = ColorTarget(self.addr0, self.colorvalue2)\n self.bcolorvalue = SimpleColorValue(colordef=UNCOLORED_MARKER, value=8)\n self.bcolortarget = ColorTarget(self.baddr, self.bcolorvalue)\n\n self.targets = [self.colortarget0, self.colortarget1,\n self.colortarget2]\n self.transformer = TransactionSpecTransformer(self.model, self.config)\n self.blockhash = '00000000c927c5d0ee1ca362f912f83c462f644e695337ce3731b9f7c5d1ca8c'\n self.txhash = '4fe45a5ba31bab1e244114c4555d9070044c73c98636231c77657022d76b87f7'", "metadata": "root.TestTxcons.setUp", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 22 }, { "content": " def test_basic(self):\n self.assertRaises(InvalidTargetError, self.basic.is_monocolor)\n self.assertRaises(InvalidTargetError,\n self.basic.add_target, self.colortarget0)\n self.basic.add_target(self.assettarget0)\n self.basic.add_target(self.assettarget1)\n self.basic.add_target(self.assettarget2)\n self.assertEqual(self.basic.is_monocolor(), True)\n self.assertEqual(self.basic.is_monoasset(), True)\n self.assertEqual(self.basic.targets, self.atargets)\n self.basic.add_target(self.bassettarget)\n self.assertEqual(self.basic.is_monoasset(), False)\n self.assertEqual(self.basic.is_monocolor(), False)\n self.assertRaises(InvalidTransformationError,\n self.basic.make_operational_tx_spec, self.asset)", "metadata": "root.TestTxcons.test_basic", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 96 }, { "content": " def add_coins(self):\n script = tools.compile(\n \"OP_DUP OP_HASH160 {0} OP_EQUALVERIFY OP_CHECKSIG\".format(\n self.address0.rawPubkey().encode(\"hex\"))).encode(\"hex\")\n\n self.model.utxo_man.store.add_utxo(self.addr0, self.txhash,\n 0, 100, script)\n\n script = tools.compile(\n \"OP_DUP OP_HASH160 {0} OP_EQUALVERIFY OP_CHECKSIG\".format(\n self.baddress.rawPubkey().encode(\"hex\"))).encode(\"hex\")\n\n self.model.utxo_man.store.add_utxo(self.baddr, self.txhash,\n 1, 20000, script)\n self.model.ccc.metastore.set_as_scanned(self.colorid0, self.blockhash)\n self.model.ccc.cdstore.add(self.colorid0, self.txhash, 0, 100, '')", "metadata": "root.TestTxcons.add_coins", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 112 }, { "content": " def test_operational(self):\n self.basic.add_target(self.assettarget0)\n self.basic.add_target(self.assettarget1)\n self.basic.add_target(self.assettarget2)\n op = self.transformer.transform_basic(self.basic, 'operational')\n self.assertTrue(self.transformer.classify_tx_spec(op), 'operational')\n self.assertRaises(InvalidTargetError, op.add_target, 1)\n self.assertEqual(ColorTarget.sum(op.get_targets()),\n ColorTarget.sum(self.targets))\n self.assertEqual(op.get_change_addr(self.colordef0), self.addr0)\n self.assertEqual(op.get_change_addr(UNCOLORED_MARKER), self.baddr)\n self.assertEqual(op.get_required_fee(1).get_value(), 10000)\n self.assertRaises(InvalidColorIdError, op.get_change_addr,\n self.colordef1)\n cv = SimpleColorValue(colordef=self.colordef0, value=0)\n self.assertRaises(ZeroSelectError, op.select_coins, cv)\n cv = SimpleColorValue(colordef=self.colordef0, value=5)\n self.assertRaises(InsufficientFundsError, op.select_coins, cv)\n self.add_coins()\n self.assertEqual(op.select_coins(cv)[1].get_value(), 100)", "metadata": "root.TestTxcons.test_operational", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 130 }, { "content": " def test_composed(self):\n self.basic.add_target(self.assettarget0)\n self.basic.add_target(self.assettarget1)\n self.basic.add_target(self.assettarget2)\n self.add_coins()\n op = self.transformer.transform(self.basic, 'operational')\n self.assertEqual(op.get_change_addr(self.colordef0), self.addr0)\n self.assertEqual(op.get_change_addr(UNCOLORED_MARKER), self.baddr)\n comp = self.transformer.transform(op, 'composed')\n self.assertTrue(self.transformer.classify_tx_spec(comp), 'composed')\n signed = self.transformer.transform(comp, 'signed')\n self.assertTrue(self.transformer.classify_tx_spec(signed), 'signed')\n self.assertEqual(len(signed.get_hex_txhash()), 64)\n txdata = signed.get_tx_data()\n same = RawTxSpec.from_tx_data(self.model, txdata)\n self.assertEqual(same.get_hex_tx_data(), signed.get_hex_tx_data())\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform,\n signed, '')", "metadata": "root.TestTxcons.test_composed", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 152 }, { "content": " def test_other(self):\n self.assertEqual(self.transformer.classify_tx_spec(1), None)\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_basic,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_operational,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_composed,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform_signed,\n self.basic, '')\n self.assertRaises(InvalidTransformationError,\n self.transformer.transform,\n '', '')\n self.add_coins()\n self.bbasic.add_target(self.bassettarget)\n signed = self.transformer.transform(self.bbasic, 'signed')\n self.assertEqual(len(signed.get_hex_txhash()), 64)", "metadata": "root.TestTxcons.test_other", "header": "['class', 'TestTxcons', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 172 } ]

[ { "span": "import os", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 9 }, { "span": "from pycoin.tx.script import opcodes, tools", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 43 }, { "span": "from ngcccbase.txcons import (InvalidTargetError, InvalidTransformationError, \n InsufficientFundsError, BasicTxSpec,\n SimpleOperationalTxSpec, RawTxSpec,\n TransactionSpecTransformer)", "start_line": 12, "start_column": 0, "end_line": 15, "end_column": 57 } ]

[]

1

false

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Unused import

codesters/codesters/resources/views.py

[ { "content": "from django.core.exceptions import ObjectDoesNotExist\nfrom django.shortcuts import get_object_or_404, render_to_response\nfrom django.core.urlresolvers import reverse_lazy, reverse\nfrom django.contrib import messages\nfrom django.utils.datastructures import SortedDict\nfrom django.http import HttpResponse, HttpResponseRedirect, Http404\nfrom django.template import RequestContext\nfrom django.views.generic import TemplateView, ListView, DetailView, CreateView, UpdateView, RedirectView\nfrom guardian.mixins import LoginRequiredMixin, PermissionRequiredMixin\nfrom braces.views import SetHeadlineMixin\nfrom djangoratings.views import AddRatingView\n\nfrom django.contrib.auth.models import User\nfrom django.contrib.contenttypes.models import ContentType\nfrom .models import Resource, Topic, ResourceType, FeaturedResource\nfrom profiles.models import SavedResource, TopicFollow\n\nfrom .forms import ResourceCreateForm, ResourceUpdateForm, TopicCreateForm, TopicUpdateForm\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def resource_home(request):\n topics = Topic.objects.filter(resource__title__isnull=False).distinct().order_by('name')\n\n #Check various session values for user details and show appropriate info\n #if request.session.get('no_name', False):\n # messages.info(request, 'Please fill in your profile details by going to your account settings.')\n # request.session['no_name'] = False\n\n if request.session.get('no_topic', False):\n messages.warning(request, 'It seems you are not following any topic. Follow topics by clicking on it below and get personalized recommendations')\n request.session['no_topic'] = False\n\n ctx = {\n 'topics': topics,\n }\n return render_to_response('resources/resource_home.html', ctx, context_instance=RequestContext(request))", "metadata": "root.resource_home", "header": "['module', '___EOS___']", "index": 19 }, { "content": "def rate_resource(request, object_id, score):\n model = 'resource'\n app_label = 'resources'\n field_name ='rating'\n try:\n content_type = ContentType.objects.get(model=model, app_label=app_label)\n except ContentType.DoesNotExist:\n raise Http404('Invalid `model` or `app_label`.')\n params = {\n 'content_type_id': content_type.id,\n 'object_id': object_id,\n 'field_name': field_name,\n 'score': score,\n }\n response = AddRatingView()(request, **params)\n if response.status_code == 200:\n if response.content == 'Vote recorded.':\n messages.success(request, 'Thanks, Your Vote is recorded')\n else:\n messages.error(request, 'Sorry, Something went wrong')\n return HttpResponseRedirect(request.META['HTTP_REFERER'])", "metadata": "root.rate_resource", "header": "['module', '___EOS___']", "index": 36 }, { "content": "class ResourceSaveView(LoginRequiredMixin, RedirectView):\n permanent = False\n", "metadata": "root.ResourceSaveView", "header": "['module', '___EOS___']", "index": 59 }, { "content": " def get_redirect_url(self, pk):\n resource = get_object_or_404(Resource, pk=pk)\n SavedResource.objects.get_or_create(user=self.request.user, resource=resource)\n if self.request.META['HTTP_REFERER']:\n return self.request.META['HTTP_REFERER']\n else:\n return reverse_lazy('resource_detail', kwargs={'pk':pk})", "metadata": "root.ResourceSaveView.get_redirect_url", "header": "['class', 'ResourceSaveView', '(', 'LoginRequiredMixin', ',', 'RedirectView', ')', ':', '___EOS___']", "index": 62 }, { "content": "class ResourceFeatureView(LoginRequiredMixin, RedirectView):\n permanent = False\n permission_required = 'resources.change_featuredresource'\n return_403 = True\n", "metadata": "root.ResourceFeatureView", "header": "['module', '___EOS___']", "index": 71 }, { "content": " def get_redirect_url(self, pk, slug):\n resource = get_object_or_404(Resource, pk=pk)\n topic = get_object_or_404(Topic, slug=slug)\n resource.make_featured(topic=topic)\n if self.request.META['HTTP_REFERER']:\n return self.request.META['HTTP_REFERER']\n else:\n return reverse_lazy('resource_detail', kwargs={'pk':pk})", "metadata": "root.ResourceFeatureView.get_redirect_url", "header": "['class', 'ResourceFeatureView', '(', 'LoginRequiredMixin', ',', 'RedirectView', ')', ':', '___EOS___']", "index": 76 }, { "content": "class SidebarMixin(object):", "metadata": "root.SidebarMixin", "header": "['module', '___EOS___']", "index": 86 }, { "content": " def get_context_data(self, **kwargs):\n context = super(SidebarMixin, self).get_context_data(**kwargs)\n topics = Topic.objects.filter(resource__title__isnull=False).distinct().order_by('name')\n context['topics'] = topics\n return context", "metadata": "root.SidebarMixin.get_context_data", "header": "['class', 'SidebarMixin', '(', 'object', ')', ':', '___EOS___']", "index": 87 }, { "content": "class ResourceAllListView(SetHeadlineMixin, SidebarMixin, ListView):\n context_object_name = 'resources'\n template_name = 'resources/resource_list.html'\n paginate_by = 12\n", "metadata": "root.ResourceAllListView", "header": "['module', '___EOS___']", "index": 94 }, { "content": " def get_queryset(self):\n level_to_get = None\n if 'level' in self.request.GET:\n level_to_get = self.request.GET['level']\n resources = Resource.objects.all()\n if level_to_get:\n resources = resources.filter(level=level_to_get)\n self.headline = 'All Resources'\n return resources", "metadata": "root.ResourceAllListView.get_queryset", "header": "['class', 'ResourceAllListView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'ListView', ')', ':', '___EOS___']", "index": 99 }, { "content": "class TopicFollowView(LoginRequiredMixin, RedirectView):\n permanent = False\n", "metadata": "root.TopicFollowView", "header": "['module', '___EOS___']", "index": 110 }, { "content": " def get_redirect_url(self, slug):\n topic = get_object_or_404(Topic, slug=slug)\n try:\n tf = TopicFollow.objects.get(user=self.request.user, topic=topic)\n tf.delete()\n messages.success(self.request, 'You have stopped following this topic.')\n except TopicFollow.DoesNotExist:\n TopicFollow.objects.create(user=self.request.user, topic=topic)\n messages.success(self.request, 'You are now following this topic.')\n return reverse_lazy('resource_topic_home', kwargs={'slug':slug})", "metadata": "root.TopicFollowView.get_redirect_url", "header": "['class', 'TopicFollowView', '(', 'LoginRequiredMixin', ',', 'RedirectView', ')', ':', '___EOS___']", "index": 113 }, { "content": "def topic_home(request, slug):\n current_topic = get_object_or_404(Topic, slug=slug)\n headline = \"\"\"Learn \"\"\" + unicode(current_topic.name).capitalize() + \"\"\" - from the best tutorials and online courses\"\"\"\n topics = Topic.objects.filter(resource__title__isnull=False).distinct().order_by('name')\n\n ctx = {\n 'current_topic': current_topic,\n 'headline': headline,\n 'topics': topics\n }\n\n resourcetypes = []\n res_types = ResourceType.objects.all().order_by('name')\n for res_type in res_types:\n try:\n result = FeaturedResource.objects.get(topic=current_topic, resource_type=res_type)\n resourcetypes.append((result.resource_type.slug, result.resource))\n except FeaturedResource.DoesNotExist:\n result = current_topic.resource_set.filter(resource_type=res_type).order_by('-rating_votes')\n if len(result) > 0:\n resourcetypes.append((result[0].resource_type.slug, result[0]))\n ctx['resourcetypes'] = SortedDict(resourcetypes)\n\n return render_to_response('resources/topic_home.html', ctx, context_instance=RequestContext(request))", "metadata": "root.topic_home", "header": "['module', '___EOS___']", "index": 124 }, { "content": "class ResourceTopicListView(SetHeadlineMixin, SidebarMixin, ListView):\n context_object_name = 'resources'\n template_name = 'resources/resource_list.html'\n paginate_by = 12\n\n", "metadata": "root.ResourceTopicListView", "header": "['module', '___EOS___']", "index": 150 }, { "content": " def get_queryset(self):\n level_to_get = None\n res_type = None\n slug = self.kwargs['slug']\n try:\n res_type = self.kwargs['res_type']\n except KeyError:\n pass\n if 'level' in self.request.GET:\n level_to_get = self.request.GET['level']\n topic = get_object_or_404(Topic, slug=slug)\n resources = topic.resource_set.all()\n self.headline = 'All ' + unicode(topic.name).capitalize() +' Resources'\n if res_type:\n res_type = get_object_or_404(ResourceType, slug=res_type)\n resources = resources.filter(resource_type=res_type)\n self.headline = unicode(topic.name).capitalize() +' Resources' + ' (' + unicode(res_type.name) + 's)'\n if level_to_get and level_to_get != 'all':\n resources = resources.filter(level=level_to_get)\n return resources", "metadata": "root.ResourceTopicListView.get_queryset", "header": "['class', 'ResourceTopicListView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'ListView', ')', ':', '___EOS___']", "index": 155 }, { "content": " def get_context_data(self, **kwargs):\n context = super(ResourceTopicListView, self).get_context_data(**kwargs)\n topic = get_object_or_404(Topic, slug=self.kwargs['slug'])\n context['current_topic'] = topic\n return context", "metadata": "root.ResourceTopicListView.get_context_data", "header": "['class', 'ResourceTopicListView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'ListView', ')', ':', '___EOS___']", "index": 176 }, { "content": "class ResourceDetailView(SetHeadlineMixin, SidebarMixin, DetailView):\n model = Resource\n context_object_name = 'resource'\n template_name = 'resources/resource_detail.html'\n\n", "metadata": "root.ResourceDetailView", "header": "['module', '___EOS___']", "index": 183 }, { "content": " def get_object(self):\n resource = super(ResourceDetailView, self).get_object()\n self.headline = unicode(resource.title) + \"\"\" (\"\"\" + unicode(resource.resource_type) + \"\"\") | Resource\"\"\"\n return resource", "metadata": "root.ResourceDetailView.get_object", "header": "['class', 'ResourceDetailView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'DetailView', ')', ':', '___EOS___']", "index": 188 }, { "content": " def get_context_data(self, **kwargs):\n context = super(ResourceDetailView, self).get_context_data(**kwargs)\n return context", "metadata": "root.ResourceDetailView.get_context_data", "header": "['class', 'ResourceDetailView', '(', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'DetailView', ')', ':', '___EOS___']", "index": 193 }, { "content": "class ResourceCreateView(LoginRequiredMixin, SetHeadlineMixin, SidebarMixin, CreateView):\n form_class = ResourceCreateForm\n model = Resource\n headline = 'Add new Resource'\n", "metadata": "root.ResourceCreateView", "header": "['module', '___EOS___']", "index": 198 }, { "content": " def form_valid(self, form):\n form.instance.created_by = self.request.user\n return super(ResourceCreateView, self).form_valid(form)", "metadata": "root.ResourceCreateView.form_valid", "header": "['class', 'ResourceCreateView', '(', 'LoginRequiredMixin', ',', 'SetHeadlineMixin', ',', 'SidebarMixin', ',', 'CreateView', ')', ':', '___EOS___']", "index": 203 }, { "content": "class ResourceUpdateView(LoginRequiredMixin, PermissionRequiredMixin, SetHeadlineMixin, SidebarMixin, UpdateView):\n form_class = ResourceUpdateForm\n model = Resource\n headline = 'Edit Resource'\n permission_required = 'resources.change_resource'\n return_403 = True", "metadata": "root.ResourceUpdateView", "header": "['module', '___EOS___']", "index": 208 }, { "content": "class TopicCreateView(SetHeadlineMixin, SidebarMixin, CreateView):\n form_class = TopicCreateForm\n template_name = 'resources/topic_form.html'\n permission_required = 'resources.add_topic'\n headline = 'Create New Topic'", "metadata": "root.TopicCreateView", "header": "['module', '___EOS___']", "index": 216 }, { "content": "class TopicUpdateView(PermissionRequiredMixin, SetHeadlineMixin, SidebarMixin, UpdateView):\n form_class = TopicUpdateForm\n model = Topic\n template_name = 'resources/topic_form.html'\n permission_required = 'resources.change_topic'\n render_403 = True\n return_403 = True\n headline = 'Edit Topic'", "metadata": "root.TopicUpdateView", "header": "['module', '___EOS___']", "index": 223 } ]

[ { "span": "from django.core.exceptions import ObjectDoesNotExist", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 53 }, { "span": "from django.core.urlresolvers import reverse_lazy, reverse", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 58 }, { "span": "from django.http import HttpResponse, HttpResponseRedirect, Http404", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 67 }, { "span": "from django.views.generic import TemplateView, ListView, DetailView, CreateView, UpdateView, RedirectView", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 105 }, { "span": "from django.contrib.auth.models import User", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 43 } ]

[]

1

false

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Insecure temporary file

deanhiller/databus/webapp/play1.3.x/python/Lib/multiprocessing/connection.py

[ { "content": "def arbitrary_address(family):\n '''\n Return an arbitrary free address for the given family\n '''\n if family == 'AF_INET':\n return ('localhost', 0)\n elif family == 'AF_UNIX':\n return tempfile.mktemp(prefix='listener-', dir=get_temp_dir())\n elif family == 'AF_PIPE':\n return tempfile.mktemp(prefix=r'\\\\.\\pipe\\pyc-%d-%d-' %\n (os.getpid(), _mmap_counter.next()))\n else:\n raise ValueError('unrecognized family')", "metadata": "root.arbitrary_address", "header": "['module', '___EOS___']", "index": 47 } ]

[ { "span": "tempfile.mktemp(prefix='listener-', dir=get_temp_dir())", "start_line": 54, "start_column": 15, "end_line": 54, "end_column": 70 }, { "span": "tempfile.mktemp(prefix=r'\\\\.\\pipe\\pyc-%d-%d-' %\n (os.getpid(), _mmap_counter.next()))", "start_line": 56, "start_column": 15, "end_line": 57, "end_column": 67 } ]

[]

1

true

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Except block handles 'BaseException'

lunixbochs/uberserver/tasserver/LegacyUsers.py

[ { "content": "import time, os\n\nimport traceback\ntry:\n\tfrom LegacyBans import BanHandler\nexcept:\n\tprint '-'*60\n\tprint traceback.format_exc()\n\tprint '-'*60\n\tprint 'Error importing LegacyBans. You might lack sqlalchemy, which you can get from running scripts/fetch_deps.py'\n\tBanHandler = None\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "\t@classmethod\n\tdef fromAccountLine(cls, line):\n\t\tline = line.split()\n\t\tif len(line) < 8: return\n\n\t\ttry:\n\t\t\tusername = line[0]\n\t\t\tpassword = line[1]\n\t\t\taccess = line[2]\n\t\t\tuid = line[3]\n\t\t\tlast_login = int(line[4])\n\t\t\tlast_ip = line[5]\n\t\t\tregister_date = int(line[6])\n\t\t\tcountry = line[7]\n\t\t\t# mapgrades = ' '.join(line[8:]) # no longer used\n\t\t\taccount_id = line[8]\n\t\t\t\n\t\t\tpermissions = int((access[-3:] or '0'), 2)\n\t\t\tingame_time = int((access[-23:-3] or '0'), 2)\n\t\t\tagreement = (len(access) >= 24 and access[-24] == '1')\n\t\t\tbot = (len(access) >= 25 and access[-25] == '1')\n\n\t\t\tif permissions and not agreement: access = 'agreement'\n\t\t\telif permissions == 3: access = 'admin'\n\t\t\telif permissions == 2: access = 'mod'\n\t\t\telif permissions == 1: access = 'user'\n\t\t\telse: access = 'disabled'\n\t\t\n\t\t\treturn cls(username, password, ingame_time, bot, access, uid, last_login, last_ip, register_date, country, account_id)\n\t\texcept:\n\t\t\tprint 'Error reading user:', line", "metadata": "root.User.fromAccountLine", "header": "['class', 'User', '(', 'object', ')', ':', '___EOS___']", "index": 26 } ]

[ { "span": "except:", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 7 }, { "span": "except:", "start_line": 55, "start_column": 2, "end_line": 55, "end_column": 9 } ]

[]

1

true

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Unused local variable

braintree/braintree_python/tests/integration/test_paypal_account.py

[ { "content": " def test_find_retuns_billing_agreement_id_with_a_paypal_account(self):\n customer_id = Customer.create().customer.id\n payment_method_token = \"paypal-account-\" + str(int(time.time()))\n\n result = PaymentMethod.create({\n \"payment_method_nonce\": Nonces.PayPalBillingAgreement,\n \"customer_id\": customer_id\n })\n self.assertTrue(result.is_success)\n\n paypal_account = PayPalAccount.find(result.payment_method.token)\n self.assertNotEquals(None, paypal_account.billing_agreement_id)", "metadata": "root.TestPayPalAccount.test_find_retuns_billing_agreement_id_with_a_paypal_account", "header": "['class', 'TestPayPalAccount', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 64 }, { "content": " def test_update_can_update_token_and_default(self):\n customer_id = Customer.create().customer.id\n\n credit_card = CreditCard.create({\n \"customer_id\": customer_id,\n \"number\": \"4111111111111111\",\n \"expiration_date\": \"12/2099\"\n }).credit_card\n\n result = PaymentMethod.create({\n \"customer_id\": customer_id,\n \"payment_method_nonce\": Nonces.PayPalFuturePayment\n })\n self.assertTrue(result.is_success)\n\n old_token = result.payment_method.token\n new_token = \"new-token-%s\" % int(round(time.time() * 1000))\n result = PayPalAccount.update(old_token, {\n \"token\": new_token,\n \"options\": {\"make_default\": True}\n })\n\n self.assertTrue(result.is_success)\n updated_account = PayPalAccount.find(new_token)\n self.assertEquals(updated_account.default, True)", "metadata": "root.TestPayPalAccount.test_update_can_update_token_and_default", "header": "['class', 'TestPayPalAccount', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 102 }, { "content": " def test_update_returns_validation_errors(self):\n payment_method_token = \"payment-token-%s\" % int(round(time.time() * 1000))\n customer_id = Customer.create().customer.id\n credit_card = CreditCard.create({\n \"token\": payment_method_token,\n \"customer_id\": customer_id,\n \"number\": \"4111111111111111\",\n \"expiration_date\": \"12/2099\"\n }).credit_card\n\n result = PaymentMethod.create({\n \"customer_id\": customer_id,\n \"payment_method_nonce\": Nonces.PayPalFuturePayment\n })\n self.assertTrue(result.is_success)\n\n old_token = result.payment_method.token\n result = PayPalAccount.update(old_token, {\n \"token\": payment_method_token,\n })\n\n self.assertFalse(result.is_success)\n self.assertEquals(\n ErrorCodes.PayPalAccount.TokenIsInUse,\n result.errors.for_object(\"paypal_account\").on(\"token\")[0].code\n )\n\n result = PayPalAccount.update(old_token, {\n \"token\": payment_method_token,\n })\n\n self.assertFalse(result.is_success)\n self.assertEquals(\n ErrorCodes.PayPalAccount.TokenIsInUse,\n result.errors.for_object(\"paypal_account\").on(\"token\")[0].code\n )", "metadata": "root.TestPayPalAccount.test_update_returns_validation_errors", "header": "['class', 'TestPayPalAccount', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 128 } ]

[ { "span": "payment_method_token ", "start_line": 66, "start_column": 8, "end_line": 66, "end_column": 28 }, { "span": "credit_card ", "start_line": 105, "start_column": 8, "end_line": 105, "end_column": 19 }, { "span": "credit_card ", "start_line": 131, "start_column": 8, "end_line": 131, "end_column": 19 } ]

[]

1

true

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Suspicious unused loop iteration variable

azoft-dev-team/imagrium/env/Lib/test/test_complex.py

[ { "content": " def test_subclass(self):\n class xcomplex(complex):\n def __add__(self,other):\n return xcomplex(complex(self) + other)\n __radd__ = __add__\n\n def __sub__(self,other):\n return xcomplex(complex(self) + other)\n __rsub__ = __sub__\n\n def __mul__(self,other):\n return xcomplex(complex(self) * other)\n __rmul__ = __mul__\n\n def __div__(self,other):\n return xcomplex(complex(self) / other)\n\n def __rdiv__(self,other):\n return xcomplex(other / complex(self))\n\n __truediv__ = __div__\n __rtruediv__ = __rdiv__\n\n def __floordiv__(self,other):\n return xcomplex(complex(self) // other)\n\n def __rfloordiv__(self,other):\n return xcomplex(other // complex(self))\n\n def __pow__(self,other):\n return xcomplex(complex(self) ** other)\n\n def __rpow__(self,other):\n return xcomplex(other ** complex(self) )\n\n def __mod__(self,other):\n return xcomplex(complex(self) % other)\n\n def __rmod__(self,other):\n return xcomplex(other % complex(self))\n\n infix_binops = ('+', '-', '*', '**', '%', '//', '/')\n xcomplex_values = (xcomplex(1), xcomplex(123.0),\n xcomplex(-10+2j), xcomplex(3+187j),\n xcomplex(3-78j))\n test_values = (1, 123.0, 10-19j, xcomplex(1+2j),\n xcomplex(1+87j), xcomplex(10+90j))\n\n for op in infix_binops:\n for x in xcomplex_values:\n for y in test_values:\n a = 'x %s y' % op\n b = 'y %s x' % op\n self.assertTrue(type(eval(a)) is type(eval(b)) is xcomplex)", "metadata": "root.ComplexTest.test_subclass", "header": "['class', 'ComplexTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 394 } ]

[ { "span": "for x in xcomplex_values:", "start_line": 443, "start_column": 12, "end_line": 443, "end_column": 37 }, { "span": "for y in test_values:", "start_line": 444, "start_column": 16, "end_line": 444, "end_column": 37 } ]

[]

1

true

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Unused import

django-oscar/django-oscar/src/oscar/apps/customer/migrations/0002_auto_20150807_1725.py

[ { "content": "# -*- coding: utf-8 -*-\nfrom __future__ import unicode_literals\n\nfrom django.db import models, migrations\nimport oscar.models.fields.autoslugfield\nimport django.core.validators\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Migration(migrations.Migration):\n\n dependencies = [\n ('customer', '0001_initial'),\n ]\n\n operations = [\n migrations.AlterField(\n model_name='communicationeventtype',\n name='code',\n field=oscar.models.fields.autoslugfield.AutoSlugField(populate_from='name', validators=[django.core.validators.RegexValidator(regex=r'^[a-zA-Z_][0-9a-zA-Z_]*$', message=\"Code can only contain the letters a-z, A-Z, digits, and underscores, and can't start with a digit.\")], editable=False, max_length=128, separator='_', blank=True, help_text='Code used for looking up this event programmatically', unique=True, verbose_name='Code'),\n preserve_default=True,\n ),\n ]", "metadata": "root.Migration", "header": "['module', '___EOS___']", "index": 8 } ]

[ { "span": "from django.db import models, migrations", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 40 } ]

[]

1

false

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Variable defined multiple times

kayhayen/Nuitka/nuitka/build/inline_copy/lib/scons-2.3.2/SCons/Environment.py

[ { "content": "def apply_tools(env, tools, toolpath):\n # Store the toolpath in the Environment.\n if toolpath is not None:\n env['toolpath'] = toolpath\n\n if not tools:\n return\n # Filter out null tools from the list.\n for tool in [_f for _f in tools if _f]:\n if SCons.Util.is_List(tool) or isinstance(tool, tuple):\n toolname = tool[0]\n toolargs = tool[1] # should be a dict of kw args\n tool = env.Tool(toolname, **toolargs)\n else:\n env.Tool(tool)", "metadata": "root.apply_tools", "header": "['module', '___EOS___']", "index": 92 } ]

[ { "span": "tool ", "start_line": 104, "start_column": 12, "end_line": 104, "end_column": 16 } ]

[ { "span": "tool ", "start_line": 100, "start_column": 8, "end_line": 100, "end_column": 12 } ]

1

true

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Unused import

neuropoly/spinalcordtoolbox/dev/sct_segment_gray_matter_asman/sct_asman_old.py

[ { "content": "#!/usr/bin/env python\n########################################################################################################################\n#\n# Asman et al. groupwise multi-atlas segmentation method implementation\n#\n#\n# ----------------------------------------------------------------------------------------------------------------------\n# Copyright (c) 2014 Polytechnique Montreal <www.neuro.polymtl.ca>\n# Authors: Augustin Roux, Sara Dupont\n# Modified: 2015-03-24\n#\n# About the license: see the file LICENSE.TXT\n########################################################################################################################\n\n# TODO change 'target' by 'input'\n# TODO : make it faster\n\n# import os\n# import sys\n# import numpy as np\n# import matplotlib.pyplot as plt\n\nfrom msct_pca import PCA\n# from msct_image import Image\n# from msct_parser import *\nfrom msct_gmseg_utils import *\nimport sct_utils as sct\n\nfrom math import sqrt\nfrom math import exp\n# from math import fabs\n\n\n\n\n########################################################################################################################\n# ----------------------------------------------------- Classes ------------------------------------------------------ #\n########################################################################################################################\n\n# ----------------------------------------------------------------------------------------------------------------------\n# MODEL DICTIONARY -----------------------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# MODEL DICTIONARY SLICE BY SLICE---------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# MODEL ---------------------------------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# TARGET SEGMENTATION PAIRWISE -----------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# TARGET SEGMENTATION GROUPWISE ----------------------------------------------------------------------------------------\n\n\n# ----------------------------------------------------------------------------------------------------------------------\n# GRAY MATTER SEGMENTATION SUPERVISED METHOD ---------------------------------------------------------------------------\n\n\n########################################################################################################################\n# ------------------------------------------------------ MAIN ------------------------------------------------------- #\n########################################################################################################################\n\nif __name__ == \"__main__\":\n param = Param()\n input_target_fname = None\n if param.debug:\n print '\\n*** WARNING: DEBUG MODE ON ***\\n'\n fname_input = param.path_dictionary + \"/errsm_34.nii.gz\"\n fname_input = param.path_dictionary + \"/errsm_34_seg_in.nii.gz\"\n else:\n param_default = Param()\n\n # Initialize the parser\n parser = Parser(__file__)\n parser.usage.set_description('Project all the input image slices on a PCA generated from set of t2star images')\n parser.add_option(name=\"-i\",\n type_value=\"file\",\n description=\"T2star image you want to project\",\n mandatory=True,\n example='t2star.nii.gz')\n parser.add_option(name=\"-dic\",\n type_value=\"folder\",\n description=\"Path to the dictionary of images\",\n mandatory=True,\n example='/home/jdoe/data/dictionary')\n parser.add_option(name=\"-model\",\n type_value=\"multiple_choice\",\n description=\"Load or compute the model\",\n mandatory=True,\n example=['load', 'compute'])\n parser.add_option(name=\"-l\",\n type_value=\"str\",\n description=\"Image containing level labels for the target or str indicating the level\",\n mandatory=False,\n\n example='MNI-Poly-AMU_level_IRP.nii.gz')\n parser.add_option(name=\"-reg\",\n type_value=[[','], 'str'],\n description=\"list of transformations to apply to co-register the dictionary data\",\n mandatory=False,\n default_value=['Affine'],\n example=['SyN'])\n parser.add_option(name=\"-target-reg\",\n type_value='multiple_choice',\n description=\"type of registration of the target to the model space \"\n \"(if pairwise, the registration applied to the target are the same as\"\n \" those of the -reg flag)\",\n mandatory=False,\n default_value='pairwise',\n example=['pairwise', 'groupwise'])\n parser.add_option(name=\"-seg-type\",\n type_value='multiple_choice',\n description=\"type of segmentation (gray matter or white matter)\",\n mandatory=False,\n default_value='wm',\n example=['wm', 'gm', 'gm-model'])\n parser.add_option(name=\"-v\",\n type_value=\"int\",\n description=\"verbose: 0 = nothing, 1 = classic, 2 = expended\",\n mandatory=False,\n default_value=0,\n example='1')\n\n arguments = parser.parse(sys.argv[1:])\n input_target_fname = arguments[\"-i\"]\n param.path_dictionary = arguments[\"-dic\"]\n param.todo_model = arguments[\"-model\"]\n\n if \"-reg\" in arguments:\n param.reg = arguments[\"-reg\"]\n if \"-target-reg\" in arguments:\n param.target_reg = arguments[\"-target-reg\"]\n if \"-seg-type\" in arguments:\n param.seg_type = arguments[\"-seg-type\"]\n if \"-l\" in arguments:\n param.level_fname = arguments[\"-l\"]\n if \"-v\" in arguments:\n param.verbose = arguments[\"-v\"]\n\n gm_seg_method = GMsegSupervisedMethod(input_target_fname, gm_seg_param=param)\n\n if param.verbose == 2:\n gm_seg_method.show()", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Param:", "metadata": "root.Param", "header": "['module', '___EOS___']", "index": 33 }, { "content": " def __init__(self):\n self.debug = 0\n self.path_dictionary = None # '/Volumes/folder_shared/greymattersegmentation/data_asman/dictionary'\n self.todo_model = None # 'compute'\n self.reg = None # TODO : REMOVE THAT PARAM WHEN REGISTRATION IS OPTIMIZED\n self.target_reg = None # TODO : REMOVE THAT PARAM WHEN GROUPWISE/PAIR IS OPTIMIZED\n self.level_fname = None\n self.seg_type = None\n self.verbose = 1", "metadata": "root.Param.__init__", "header": "['class', 'Param', ':', '___EOS___']", "index": 34 }, { "content": "class ModelDictionary:\n \"\"\"\n Dictionary used by the supervised gray matter segmentation method\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n # FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n def nb_w_pixels(self):\n s_w_pix = 0\n for slice in self.slices:\n s_w_pix += np.sum(slice.seg)\n return s_w_pix/self.J\n '''\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def compute_majority_vote_mean_seg_old_version(self, seg_data_set):\n \"\"\"\n Compute the mean segmentation image for a given segmentation data set seg_data_set by Majority Vote\n\n :param seg_data_set:\n :return:\n \"\"\"\n mean_seg = []\n # dictionary containing for each possible label value :\n # the sum of all the flatten segmentation in seg_data_set = vector of the sum for each pixel\n choose_maj_vote = {}\n # for 0 and for 1 :\n for l in self.L:\n to_be_summed = []\n for dic_slice in seg_data_set:\n # vector of the pixel corresponding to the label value l in this slice\n # 0 if the pixel is different than the label value, 1 if it's the same\n consistent_vox = []\n for row in dic_slice:\n for i in row:\n try:\n if i > 0.2:\n i = 1\n except ValueError:\n print 'Value Error with i = ', i\n print 'Dataset was : \\n', seg_data_set\n consistent_vox.append(kronecker_delta(i, l))\n to_be_summed.append(consistent_vox)\n summed_vector = np.zeros(len(to_be_summed[0]), dtype=np.int)\n # adding all the vectors of consistent_vox\n for v in to_be_summed:\n summed_vector = np.add(summed_vector, v)\n choose_maj_vote[l] = summed_vector\n\n # for each pixel :\n # the value chosen for mean_seg is the value that was the most present in the data set for this pixel\n for vote_tuple in zip(choose_maj_vote[0], choose_maj_vote[1]):\n if vote_tuple[0] >= vote_tuple[1]:\n mean_seg.append(0)\n elif vote_tuple[1] > vote_tuple[0]:\n mean_seg.append(1)\n n = int(sqrt(self.N))\n return np.asarray(mean_seg).reshape(n, n)\n '''\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n def crop_data_new_ellipse(self):\n #croping the im_M images\n\n #mean_seg dimensions :\n #height\n down = True\n above = False\n height_min = 0\n height_max = 0\n for h,row in enumerate(self.mean_seg.T):\n if sum(row) == 0:\n if down :\n height_min = h\n elif not above:\n height_max = h\n above = True\n else:\n down = False\n height_min += 1\n height_max -= 1\n\n #width\n left = True\n right = False\n width_min = 0\n width_max = 0\n for w,row in enumerate(self.mean_seg):\n if sum(row) == 0:\n if left :\n width_min = w\n elif not right:\n width_max = w\n right = True\n else:\n left = False\n width_min += 1\n width_max -= 1\n\n a = (width_max - width_min)/2.0\n b = (height_max - height_min)/2.0\n\n range_x = np.asarray(range(int(-10*a),int(10*a)+1)) /10.0\n top_points = [(b * sqrt(1-(x**2/a**2)),x) for x in range_x]\n n = int(sqrt(self.N))\n\n top_points.sort()\n\n ellipse_mask = np.zeros((n,n))\n done_rows = []\n for point in top_points:\n y_plus = int(round((n/2)+point[0]))\n y_minus = int(round((n/2)-point[0]))\n print 'y_plus', y_plus, 'y_minus', y_minus\n if y_plus not in done_rows:\n x_plus = int(round((n/2)+abs(point[1])))\n x_minus = int(round((n/2)-abs(point[1])))\n for x in range(x_minus, x_plus+1):\n ellipse_mask[x, y_plus] = 1\n ellipse_mask[x, y_minus] = 1\n done_rows.append(y_plus)\n\n\n print 'axis', a, b\n print 'done_rows', done_rows\n print 'center : ', int(n/2)\n print ellipse_mask\n save_image(ellipse_mask, 'ellipse_mask', path=self.model_dic_name+'/', type='uint8')\n '''\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def crop_data(self):\n \"\"\"\n Crop the model images (im_M) to an ellipse shape to get rid of the size/shape variability between slices\n \"\"\"\n im_mean_seg = Image(param=self.mean_seg)\n\n nz_coord = im_mean_seg.getNonZeroCoordinates()\n nz_coord_dic = {}\n for coord in nz_coord:\n nz_coord_dic[coord.x] = []\n for coord in nz_coord:\n nz_coord_dic[coord.x].append(coord.y)\n\n ellipse_mask = im_mean_seg.copy().data\n\n for x, y_list in nz_coord_dic.items():\n full_y_list = range(min(y_list), max(y_list)+1)\n if y_list != full_y_list:\n for y in full_y_list:\n ellipse_mask[x, y] = 1\n\n save_image(ellipse_mask, 'ellipse_mask', path=self.model_dic_name+'/', im_type='uint8')\n\n for dic_slice in self.slices:\n new_im_m = np.einsum('ij,ij->ij', ellipse_mask, dic_slice.im_M)\n dic_slice.set(im_m=new_im_m)\n '''\n # ------------------------------------------------------------------------------------------------------------------\n # END OF FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n # TODO: ADAPT LOAD DIC TO GM_SEG AND WM_SEG ATTRIBUTES FOR THE SLICES\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------", "metadata": "root.ModelDictionary", "header": "['module', '___EOS___']", "index": 51 }, { "content": " def __init__(self, dic_param=None):\n \"\"\"\n model dictionary constructor\n\n :param dic_param: dictionary parameters, type: Param\n \"\"\"\n if dic_param is None:\n self.param = Param()\n else:\n self.param = dic_param\n\n # list of the slices of the dictionary\n self.slices = [] # type: list of slices\n # number of slices\n self.J = 0 # type: int\n # dimension of the slices (flattened)\n self.N = 0 # type: int\n # mean segmentation image of the dictionary\n self.mean_seg = None # type: numpy array\n # mean image of the dictionary\n self.mean_image = None # type: numpy array\n\n # dictionary containing information about the data dictionary slices by subject : used to save the model only\n # self.dic_data_info[subject] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': []}\n self.dic_data_info = {} # type: dictionary\n\n # list of transformation to apply to each slice to co-register the data into the common groupwise space\n if self.param.reg is not None:\n self.coregistration_transfos = self.param.reg\n else:\n self.coregistration_transfos = ['Affine']\n\n suffix = ''\n for transfo in self.coregistration_transfos:\n suffix += '_' + transfo\n # self.coregistration_transfos = ['SyN']\n\n # folder containing the saved model\n self.model_dic_name = ''\n if self.param.todo_model == 'compute':\n self.model_dic_name = './gmseg_model_dictionary' + suffix # TODO: remove suffix\n self.compute_model_dictionary()\n elif self.param.todo_model == 'load':\n self.model_dic_name = self.param.path_dictionary # TODO change the path by the name of the dic ?? ...\n self.load_model_dictionary()\n else:\n sct.printv('WARNING: no todo_model param', self.param.verbose, 'warning')\n\n # save all the dictionary slices\n # TODO: --> not used by the model, only for visualization\n\n '''\n if 'data_by_slice' not in os.listdir('.'):\n sct.run('mkdir ./data_by_slice')\n os.chdir('./data_by_slice')\n for j in range(self.J):\n save_image(self.slices[j].im, 'slice_'+str(j) + '_im')\n save_image(self.slices[j].im_M, 'slice_'+str(j) + '_registered_im')\n\n save_image(self.slices[j].seg, 'slice_'+str(j) + '_seg')\n save_image(self.slices[j].seg_M, 'slice_'+str(j) + '_registered_seg')\n os.chdir('..')\n '''\n\n '''\n if self.param.verbose == 2:\n self.show_data()\n '''", "metadata": "root.ModelDictionary.__init__", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 55 }, { "content": " def compute_model_dictionary(self):\n \"\"\"\n Compute the model dictionary using the provided data set\n \"\"\"\n sct.printv('\\nComputing the model dictionary ...', self.param.verbose, 'normal')\n # Load all the images' slices from param.path_dictionary\n sct.printv('\\nLoading data dictionary ...', self.param.verbose, 'normal')\n # List of T2star images (im) and their label decision (seg) (=segmentation of the gray matter), slice by slice\n\n sct.run('mkdir ' + self.model_dic_name)\n\n self.slices = self.load_data_dictionary()\n\n # number of slices in the data set\n self.J = len([dic_slice.im for dic_slice in self.slices])\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im.flatten())\n\n self.save_model_data('im')\n\n if self.param.seg_type != 'gm-model':\n # inverts the segmentation slices : the model uses segmentation of the WM instead of segmentation of the GM\n self.invert_seg()\n self.save_model_data('inverted_gm_seg')\n\n sct.printv('\\nComputing the transformation to co-register all the data into a common groupwise space ...',\n self.param.verbose, 'normal')\n\n self.mean_seg = self.seg_coregistration(transfo_to_apply=self.coregistration_transfos)\n self.save_model_data('seg_M')\n\n sct.printv('\\nCo-registering all the data into the common groupwise space ...', self.param.verbose, 'normal')\n\n # List of images (im_M) and their label decision (seg_M) (=segmentation of the gray matter),\n # --> slice by slice in the common groupwise space\n self.coregister_data(transfo_to_apply=self.coregistration_transfos)\n\n '''\n TESTING\n\n self.crop_data()\n '''\n\n self.save_model_data('im_M')\n\n self.mean_image = self.compute_mean_dic_image(np.asarray([dic_slice.im_M for dic_slice in self.slices]))\n save_image(self.mean_image, 'mean_image', path=self.model_dic_name+'/', im_type='uint8')", "metadata": "root.ModelDictionary.compute_model_dictionary", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 125 }, { "content": " def load_data_dictionary(self):\n \"\"\"\n each slice of each subject will be loaded separately in a Slice object containing :\n\n - a slice id\n\n - the original T2star image crop around the spinal cord: im\n\n - a manual segmentation of the gray matter: seg\n\n :return slices: numpy array of all the slices of the data dictionary\n \"\"\"\n # initialization\n slices = []\n j = 0\n # TODO: change the name of files to find to a more general structure\n for subject_dir in os.listdir(self.param.path_dictionary):\n subject_path = self.param.path_dictionary + '/' + subject_dir\n if os.path.isdir(subject_path):\n self.dic_data_info[subject_dir] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': []}\n\n subject_seg_in = ''\n subject_gm_seg = ''\n sct.run('mkdir ' + self.model_dic_name + '/' + subject_dir, verbose=self.param.verbose)\n for file_name in os.listdir(subject_path):\n if 'GM' in file_name or 'gmseg' in file_name:\n subject_gm_seg = file_name\n '''\n # copy of the seg image in the saved model folder\n sct.run('cp ./' + self.param.path_dictionary + subject_dir + '/' + file_name\n + ' ' + self.model_dic_name + '/' + subject_dir + '/' + subject_dir + '_seg.nii.gz')\n '''\n if 'seg_in' in file_name and 'gm' not in file_name.lower():\n subject_seg_in = file_name\n '''\n # copy of the slice image in the saved model folder\n sct.run('cp ./' + self.param.path_dictionary + subject_dir + '/' + file_name\n + ' ' + self.model_dic_name + '/' + subject_dir + '/' + subject_dir + '_im.nii.gz')\n '''\n\n im = Image(subject_path + '/' + subject_seg_in)\n seg = Image(subject_path + '/' + subject_gm_seg)\n\n for im_slice, seg_slice in zip(im.data, seg.data):\n self.dic_data_info[subject_dir]['n_slices'] += 1\n slices.append(Slice(slice_id=j, im=im_slice, gm_seg=seg_slice, reg_to_m=[]))\n j += 1\n\n return np.asarray(slices)", "metadata": "root.ModelDictionary.load_data_dictionary", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 178 }, { "content": " def save_model_data(self, what_to_save):\n \"\"\"\n save 3D images of the model dictionary using the dictionary of information about the data slices by subject\n\n :param what_to_save: type of data to be saved\n \"\"\"\n suffix = ''\n data_to_save = []\n total_n_slices = 0\n if what_to_save == 'gm_seg':\n suffix = '_gm_seg'\n data_to_save = [dic_slice.gm_seg for dic_slice in self.slices]\n if what_to_save == 'inverted_gm_seg':\n suffix = '_wm_seg'\n data_to_save = [dic_slice.wm_seg for dic_slice in self.slices]\n elif what_to_save == 'im':\n suffix = '_im'\n data_to_save = [dic_slice.im for dic_slice in self.slices]\n elif what_to_save == 'im_M':\n suffix = '_im_model_space'\n data_to_save = [dic_slice.im_M for dic_slice in self.slices]\n elif what_to_save == 'gm_seg_M':\n suffix = '_gm_seg_model_space'\n data_to_save = [dic_slice.gm_seg_M for dic_slice in self.slices]\n elif what_to_save == 'wm_seg_M':\n suffix = '_wm_seg_model_space'\n data_to_save = [dic_slice.wm_seg_M for dic_slice in self.slices]\n\n for subject_name in sorted(self.dic_data_info.keys()):\n first_subject_slice = total_n_slices\n last_subject_slice = first_subject_slice + self.dic_data_info[subject_name]['n_slices']\n self.dic_data_info[subject_name][what_to_save] = data_to_save[first_subject_slice:last_subject_slice]\n total_n_slices += self.dic_data_info[subject_name]['n_slices']\n\n for subject_name, info in zip(self.dic_data_info.keys(), self.dic_data_info.values()):\n for i, slice_i in enumerate(info[what_to_save]):\n\n to_save = Image(param=np.asarray(slice_i))\n to_save.path = self.model_dic_name + '/' + subject_name + '/'\n\n to_save.file_name = subject_name + '_slice' + str(i) + suffix\n to_save.ext = '.nii.gz'\n to_save.save(type='minimize')", "metadata": "root.ModelDictionary.save_model_data", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 229 }, { "content": " def invert_seg(self):\n \"\"\"\n Invert the gray matter segmentation to get segmentation of the white matter instead\n keeps more information, theoretically better results\n \"\"\"\n for dic_slice in self.slices:\n im_dic = Image(param=dic_slice.im)\n sc = im_dic.copy()\n nz_coord_sc = sc.getNonZeroCoordinates()\n im_seg = Image(param=dic_slice.gm_seg)\n nz_coord_d = im_seg.getNonZeroCoordinates()\n for coord in nz_coord_sc:\n sc.data[coord.x, coord.y] = 1\n for coord in nz_coord_d:\n im_seg.data[coord.x, coord.y] = 1\n # cast of the -1 values (-> GM pixel at the exterior of the SC pixels) to +1 --> WM pixel\n inverted_slice_seg = np.absolute(sc.data - im_seg.data).astype(int)\n dic_slice.set(wm_seg=inverted_slice_seg)", "metadata": "root.ModelDictionary.invert_seg", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 274 }, { "content": " def seg_coregistration(self, transfo_to_apply=None):\n \"\"\"\n For all the segmentation slices, do a registration of the segmentation slice to the mean segmentation\n applying all the transformations in transfo_to_apply\n\n Compute, apply and save each transformation warping field for all the segmentation slices\n\n Compute the new mean segmentation at each step and update self.mean_seg\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n if self.param.seg_type == 'gm-model':\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.gm_seg for dic_slice in self.slices]))\n else:\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.wm_seg for dic_slice in self.slices]))\n\n for transfo in transfo_to_apply:\n sct.printv('Doing a ' + transfo + ' registration of each segmentation slice to the mean segmentation ...', self.param.verbose, 'normal')\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type=transfo)\n\n '''\n fig=plt.figure()\n plt.imshow(current_mean_seg)\n plt.title('Current mean segmentation ...')\n plt.plot()\n\n fig=plt.figure()\n plt.imshow(self.slices[0].seg_M)\n plt.title('slice 0...')\n plt.plot()\n\n # mean number of white pixels in the manual segmentation slices of the dictionary\n mean_white_pix = self.nb_w_pixels()\n print mean_white_pix\n\n\n i=1\n while np.sum(current_mean_seg) < 0.8*mean_white_pix:\n print '--> Affine registration number ',i\n print 'number of white pixels in the current mean seg', np.sum(current_mean_seg)\n current_mean_seg = self.compute_mean_seg(np.asarray([slice.seg_M for slice in self.slices]))\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type='Affine')\n i+=10\n #current_mean_seg = self.compute_mean_seg(np.asarray([slice.seg_M for slice in self.slices]))\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type='Affine')\n '''\n resulting_mean_seg = current_mean_seg\n\n return resulting_mean_seg", "metadata": "root.ModelDictionary.seg_coregistration", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 294 }, { "content": " def find_coregistration(self, mean_seg=None, transfo_type='Rigid', first=True):\n \"\"\"\n For each segmentation slice, apply and save a registration of the specified type of transformation\n the name of the registration file (usually a matlab matrix) is saved in self.RtoM\n\n :param mean_seg: current mean segmentation\n\n :param transfo_type: type of transformation for the registration\n\n :return mean seg: updated mean segmentation\n \"\"\"\n for dic_slice in self.slices:\n name_j_transform = 'transform_slice_' + str(dic_slice.id) + find_ants_transfo_name(transfo_type)[0]\n new_reg_list = dic_slice.reg_to_M.append(name_j_transform)\n dic_slice.set(reg_to_m=new_reg_list)\n if first:\n if self.param.seg_type == 'gm-model':\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n if self.param.seg_type == 'gm-model':\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n if self.param.seg_type == 'gm-model':\n dic_slice.set(gm_seg_m=seg_m.astype(int))\n dic_slice.set(gm_seg_m_flat=seg_m.flatten().astype(int))\n else:\n dic_slice.set(wm_seg_m=seg_m.astype(int))\n dic_slice.set(wm_seg_m_flat=seg_m.flatten().astype(int))\n\n if self.param.seg_type == 'gm-model':\n mean_seg = compute_majority_vote_mean_seg([dic_slice.gm_seg_M for dic_slice in self.slices])\n else:\n mean_seg = compute_majority_vote_mean_seg([dic_slice.wm_seg_M for dic_slice in self.slices])\n\n save_image(mean_seg, 'mean_seg', path=self.model_dic_name+'/', im_type='uint8')\n\n return mean_seg", "metadata": "root.ModelDictionary.find_coregistration", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 354 }, { "content": " def compute_mean_dic_image(self, im_data_set):\n \"\"\"\n Compute the mean image of the dictionary\n\n Used to co-register the dictionary images into teh common groupwise space\n\n :param im_data_set:\n :return mean: mean image of the input data set\n \"\"\"\n mean = np.sum(im_data_set, axis=0)\n\n mean /= float(self.J)\n\n return mean", "metadata": "root.ModelDictionary.compute_mean_dic_image", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 443 }, { "content": " def coregister_data(self, transfo_to_apply=None):\n \"\"\"\n Apply to each image slice of the dictionary the transformations found registering the segmentation slices.\n The co_registered images are saved for each slice as im_M\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n list_im = [dic_slice.im for dic_slice in self.slices]\n list_gm_seg = [dic_slice.gm_seg for dic_slice in self.slices]\n \n for dic_slice in self.slices:\n for n_transfo, transfo in enumerate(transfo_to_apply):\n im_m = apply_ants_transfo(self.compute_mean_dic_image(list_im), dic_slice.im, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n # apply_2D_rigid_transformation(self.im[j], self.RM[j]['tx'], self.RM[j]['ty'], self.RM[j]['theta'])\n if self.param.seg_type == 'gm':\n gm_seg_m = apply_ants_transfo(self.compute_mean_dic_image(list_gm_seg), dic_slice.gm_seg, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n\n dic_slice.set(im_m=im_m)\n dic_slice.set(im_m_flat=im_m.flatten())\n if self.param.seg_type == 'gm':\n dic_slice.set(gm_seg_m=gm_seg_m)\n dic_slice.set(gm_seg_m_flat=gm_seg_m.flatten())", "metadata": "root.ModelDictionary.coregister_data", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 459 }, { "content": " def load_model_dictionary(self):\n \"\"\"\n Load the model dictionary from a saved one\n \"\"\"\n import itertools\n\n sct.printv('\\nLoading the model dictionary ...', self.param.verbose, 'normal')\n\n j = 0\n for subject_dir in os.listdir(self.model_dic_name):\n subject_path = self.model_dic_name + subject_dir\n if os.path.isdir(subject_path) and 'transformations' not in subject_path:\n subject_im = None\n im_mat = None\n subject_seg = None\n seg_mat = None\n subject_im_m = None\n im_m = None\n subject_seg_m = None\n seg_m = None\n\n for file_name in os.listdir(subject_path):\n if '_im.nii' in file_name:\n subject_im = file_name\n if '_seg.nii' in file_name:\n subject_seg = file_name\n if '_im_model_space.nii' in file_name:\n subject_im_m = file_name\n if '_seg_model_space.nii' in file_name:\n subject_seg_m = file_name\n if subject_im is not None:\n im = Image(subject_path + '/' + subject_im)\n im_mat = im.data\n if subject_seg is not None:\n seg = Image(subject_path + '/' + subject_seg)\n seg_mat = seg.data\n if subject_im_m is not None:\n im_m = Image(subject_path + '/' + subject_im_m)\n else:\n sct.printv('WARNING: no dictionary image in model space for ' + subject_dir,\n self.param.verbose, 'warning')\n if subject_seg_m is not None:\n seg_m = Image(subject_path + '/' + subject_seg_m)\n else:\n sct.printv('WARNING: no segmentation in model space for ' + subject_dir,\n self.param.verbose, 'warning')\n if im_mat is None:\n im_mat = itertools.repeat(None, im_m.data.shape[0])\n if seg_mat is None:\n seg_mat = itertools.repeat(None, im_m.data.shape[0])\n\n for im_slice, seg_slice, im_m_slice, seg_m_slice in zip(im_mat, seg_mat, im_m.data, seg_m.data):\n reg_list = ['transform_slice_' + str(j) + find_ants_transfo_name(transfo_type)[0]\n for transfo_type in self.coregistration_transfos]\n self.slices.append(Slice(slice_id=j, im=im_slice, seg=seg_slice, im_m=im_m_slice, seg_m=seg_m_slice,\n im_m_flat=im_m_slice.flatten(), seg_m_flat=seg_m_slice.flatten(),\n reg_to_m=reg_list))\n j += 1\n\n # number of atlases in the dictionary\n self.J = len(self.slices) # len([slice.im for slice in self.slices])\n\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im_M.flatten())\n\n self.mean_image = Image(self.model_dic_name + 'mean_image.nii.gz').data\n self.mean_seg = Image(self.model_dic_name + 'mean_seg.nii.gz').data", "metadata": "root.ModelDictionary.load_model_dictionary", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 587 }, { "content": " def show_data(self):\n \"\"\"\n show the 10 first slices of the model dictionary\n \"\"\"\n for dic_slice in self.slices[:10]:\n fig = plt.figure()\n\n seg_subplot = fig.add_subplot(2, 3, 1)\n seg_subplot.set_title('Original space - seg')\n im_seg = seg_subplot.imshow(dic_slice.wm_seg)\n im_seg.set_interpolation('nearest')\n im_seg.set_cmap('gray')\n\n seg_m_subplot = fig.add_subplot(2, 3, 2)\n seg_m_subplot.set_title('Common groupwise space - seg')\n im_seg_m = seg_m_subplot.imshow(dic_slice.wm_seg_M)\n im_seg_m.set_interpolation('nearest')\n im_seg_m.set_cmap('gray')\n\n mean_seg_subplot = fig.add_subplot(2, 3, 3)\n mean_seg_subplot.set_title('Mean seg')\n im_mean_seg = mean_seg_subplot.imshow(np.asarray(self.mean_seg))\n im_mean_seg.set_interpolation('nearest')\n im_mean_seg.set_cmap('gray')\n\n slice_im_subplot = fig.add_subplot(2, 3, 4)\n slice_im_subplot.set_title('Original space - data ')\n im_slice_im = slice_im_subplot.imshow(dic_slice.im)\n im_slice_im.set_interpolation('nearest')\n im_slice_im.set_cmap('gray')\n\n slice_im_m_subplot = fig.add_subplot(2, 3, 5)\n slice_im_m_subplot.set_title('Common groupwise space - data ')\n im_slice_im_m = slice_im_m_subplot.imshow(dic_slice.im_M)\n im_slice_im_m.set_interpolation('nearest')\n im_slice_im_m.set_cmap('gray')\n\n plt.suptitle('Slice ' + str(dic_slice.id))\n plt.show()", "metadata": "root.ModelDictionary.show_data", "header": "['class', 'ModelDictionary', ':', '___EOS___']", "index": 656 }, { "content": "class ModelDictionaryBySlice:\n \"\"\"\n Dictionary used by the supervised gray matter segmentation method\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n # FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n # END OF FUNCTIONS USED TO COMPUTE THE MODEL\n # ------------------------------------------------------------------------------------------------------------------\n # TODO: ADAPT LOAD MODEL TO GMSEG AND WMSEG ATTRIBUTES OF SLCIES\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------", "metadata": "root.ModelDictionaryBySlice", "header": "['module', '___EOS___']", "index": 699 }, { "content": " def __init__(self, dic_param=None):\n \"\"\"\n model dictionary constructor\n\n :param dic_param: dictionary parameters, type: Param\n \"\"\"\n if dic_param is None:\n self.param = Param()\n else:\n self.param = dic_param\n\n self.level_label = {0: '', 1: 'C1', 2: 'C2', 3: 'C3', 4: 'C4', 5: 'C5', 6: 'C6', 7: 'C7', 8: 'T1', 9: 'T2',\n 10: 'T3', 11: 'T4', 12: 'T5', 13: 'T6'}\n\n # list of the slices of the dictionary\n self.slices = [] # type: list of slices\n # number of slices\n self.J = 0 # type: int\n # dimension of the slices (flattened)\n self.N = 0 # type: int\n # mean segmentation image of the dictionary\n self.mean_seg = None # type: numpy array\n # mean image of the dictionary\n self.mean_image = None # type: numpy array\n\n # dictionary containing information about the data dictionary slices by subject : used to save the model only\n # self.dic_data_info[subject] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': []}\n self.dic_data_info = {} # type: dictionary\n\n # list of transformation to apply to each slice to co-register the data into the common groupwise space\n if self.param.reg is not None:\n self.coregistration_transfos = self.param.reg\n else:\n self.coregistration_transfos = ['Affine']\n\n suffix = ''\n for transfo in self.coregistration_transfos:\n suffix += '_' + transfo\n suffix += '_' + self.param.seg_type[0:2]\n # self.coregistration_transfos = ['SyN']\n\n # folder containing the saved model\n self.model_dic_name = ''\n if self.param.todo_model == 'compute':\n self.model_dic_name = './gmseg_model_dictionary' + suffix # TODO: remove suffix when reg is optimized\n self.compute_model_dictionary()\n elif self.param.todo_model == 'load':\n self.model_dic_name = self.param.path_dictionary # TODO change the path by the name of the dic ?? ...\n self.load_model_dictionary()\n else:\n sct.printv('WARNING: no todo_model param', self.param.verbose, 'warning')", "metadata": "root.ModelDictionaryBySlice.__init__", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 703 }, { "content": " def compute_model_dictionary(self):\n \"\"\"\n Compute the model dictionary using the provided data set\n \"\"\"\n sct.printv('\\nComputing the model dictionary ...', self.param.verbose, 'normal')\n # Load all the images' slices from param.path_dictionary\n sct.printv('\\nLoading data dictionary ...', self.param.verbose, 'normal')\n # List of T2star images (im) and their label decision (seg) (=segmentation of the gray matter), slice by slice\n\n sct.run('mkdir ' + self.model_dic_name)\n\n self.slices = self.load_data_dictionary()\n\n # number of slices in the data set\n self.J = len([dic_slice.im for dic_slice in self.slices])\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im.flatten())\n\n if self.param.seg_type != 'gm-model':\n # inverts the segmentation slices : the model uses segmentation of the WM instead of segmentation of the GM\n self.invert_seg()\n self.save_model_data('inverted_gm_seg')\n\n sct.printv('\\nComputing the transformation to co-register all the data into a common groupwise space ...',\n self.param.verbose, 'normal')\n\n self.mean_seg = self.seg_coregistration(transfo_to_apply=self.coregistration_transfos)\n if self.param.seg_type == 'gm-model':\n self.save_model_data('gm_seg_M')\n else:\n self.save_model_data('wm_seg_M')\n\n\n sct.printv('\\nCo-registering all the data into the common groupwise space ...', self.param.verbose, 'normal')\n\n # List of images (im_M) and their label decision (seg_M) (=segmentation of the gray matter),\n # --> slice by slice in the common groupwise space\n self.coregister_data(transfo_to_apply=self.coregistration_transfos)\n\n self.save_model_data('im_M')\n\n self.mean_image = self.compute_mean_dic_image(np.asarray([dic_slice.im_M for dic_slice in self.slices]))\n save_image(self.mean_image, 'mean_image', path=self.model_dic_name+'/', im_type='uint8')", "metadata": "root.ModelDictionaryBySlice.compute_model_dictionary", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 756 }, { "content": " def load_data_dictionary(self):\n \"\"\"\n each slice of each subject will be loaded separately in a Slice object containing :\n\n - a slice id\n\n - the original T2star image crop around the spinal cord: im\n\n - a manual segmentation of the gray matter: seg\n\n :return slices: numpy array of all the slices of the data dictionary\n \"\"\"\n # initialization\n slices = []\n total_j_im = 0\n total_j_seg = 0\n # TODO: change the name of files to find to a more general structure\n for subject_dir in os.listdir(self.param.path_dictionary):\n subject_path = self.param.path_dictionary + '/' + subject_dir\n if os.path.isdir(subject_path):\n self.dic_data_info[subject_dir] = {'n_slices': 0, 'inverted_gm_seg': [], 'im_M': [], 'seg_M': [], 'levels': []}\n j_im = 0\n j_seg = 0\n first_slice = total_j_im\n sct.run('mkdir ' + self.model_dic_name + '/' + subject_dir, verbose=self.param.verbose)\n for file_name in os.listdir(subject_path):\n if 'im' in file_name:\n slice_level = 0\n name_list = file_name.split('_')\n for word in name_list:\n if word in self.level_label.values():\n slice_level = get_key_from_val(self.level_label, word)\n\n slices.append(Slice(slice_id=total_j_im, im=Image(subject_path + '/' + file_name).data, level=slice_level, reg_to_m=[]))\n self.dic_data_info[subject_dir]['levels'].append(slice_level)\n\n # copy of the slice image in the saved model folder\n if j_im < 10:\n j_im_str = str(j_im)\n j_im_str = '0' + j_im_str\n else:\n j_im_str = str(j_im)\n\n im_file_name = subject_dir + '_slice' + j_im_str + '_' + self.level_label[slice_level] + '_im.nii.gz'\n sct.run('cp ./' + self.param.path_dictionary + '/' + subject_dir + '/' + file_name + ' ' + self.model_dic_name + '/' + subject_dir + '/' + im_file_name)\n j_im += 1\n total_j_im += 1\n\n if 'seg' in file_name:\n slices[total_j_seg].set(gm_seg=Image(subject_path + '/' + file_name).data)\n j_seg += 1\n total_j_seg += 1\n\n if j_im == j_seg:\n self.dic_data_info[subject_dir]['n_slices'] = (first_slice, total_j_im)\n else:\n sct.printv('ERROR: subject ' + subject_dir + ' doesn\\'t have the same number of slice images and segmentations', verbose=self.param.verbose, type='error')\n\n return np.asarray(slices)", "metadata": "root.ModelDictionaryBySlice.load_data_dictionary", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 805 }, { "content": " def save_model_data(self, what_to_save):\n \"\"\"\n save 3D images of the model dictionary using the dictionary of information about the data slices by subject\n\n :param what_to_save: type of data to be saved\n \"\"\"\n suffix = ''\n data_to_save = []\n if what_to_save == 'gm_seg':\n suffix = '_gm_seg'\n data_to_save = [dic_slice.gm_seg for dic_slice in self.slices]\n if what_to_save == 'inverted_gm_seg':\n suffix = '_wm_seg'\n data_to_save = [dic_slice.wm_seg for dic_slice in self.slices]\n elif what_to_save == 'im':\n suffix = '_im'\n data_to_save = [dic_slice.im for dic_slice in self.slices]\n elif what_to_save == 'im_M':\n suffix = '_im_model_space'\n data_to_save = [dic_slice.im_M for dic_slice in self.slices]\n elif what_to_save == 'gm_seg_M':\n suffix = '_gm_seg_model_space'\n data_to_save = [dic_slice.gm_seg_M for dic_slice in self.slices]\n elif what_to_save == 'wm_seg_M':\n suffix = '_wm_seg_model_space'\n data_to_save = [dic_slice.wm_seg_M for dic_slice in self.slices]\n\n for subject_name in sorted(self.dic_data_info.keys()):\n first_subject_slice, last_subject_slice = self.dic_data_info[subject_name]['n_slices']\n self.dic_data_info[subject_name][what_to_save] = data_to_save[first_subject_slice:last_subject_slice]\n\n for i, slice_i in enumerate(self.dic_data_info[subject_name][what_to_save]):\n to_save = Image(param=np.asarray(slice_i))\n to_save.path = self.model_dic_name + '/' + subject_name + '/'\n\n if i < 10:\n i_str = str(i)\n i_str = '0' + i_str\n else:\n i_str = str(i)\n to_save.file_name = subject_name + '_slice' + i_str + '_' + self.level_label[self.dic_data_info[subject_name]['levels'][i]] + suffix\n to_save.ext = '.nii.gz'\n to_save.save(type='minimize')", "metadata": "root.ModelDictionaryBySlice.save_model_data", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 866 }, { "content": " def invert_seg(self):\n \"\"\"\n Invert the gray matter segmentation to get segmentation of the white matter instead\n keeps more information, theoretically better results\n \"\"\"\n for dic_slice in self.slices:\n im_dic = Image(param=dic_slice.im)\n sc = im_dic.copy()\n nz_coord_sc = sc.getNonZeroCoordinates()\n im_seg = Image(param=dic_slice.gm_seg)\n nz_coord_d = im_seg.getNonZeroCoordinates()\n for coord in nz_coord_sc:\n sc.data[coord.x, coord.y] = 1\n for coord in nz_coord_d:\n im_seg.data[coord.x, coord.y] = 1\n # cast of the -1 values (-> GM pixel at the exterior of the SC pixels) to +1 --> WM pixel\n inverted_slice_decision = np.absolute(sc.data - im_seg.data).astype(int)\n dic_slice.set(wm_seg=inverted_slice_decision)", "metadata": "root.ModelDictionaryBySlice.invert_seg", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 911 }, { "content": " def seg_coregistration(self, transfo_to_apply=None):\n \"\"\"\n For all the segmentation slices, do a registration of the segmentation slice to the mean segmentation\n applying all the transformations in transfo_to_apply\n\n Compute, apply and save each transformation warping field for all the segmentation slices\n\n Compute the new mean segmentation at each step and update self.mean_seg\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n if self.param.seg_type == 'gm-model':\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.gm_seg for dic_slice in self.slices]))\n else:\n current_mean_seg = compute_majority_vote_mean_seg(np.asarray([dic_slice.wm_seg for dic_slice in self.slices]))\n\n for transfo in transfo_to_apply:\n sct.printv('Doing a ' + transfo + ' registration of each segmentation slice to the mean segmentation ...', self.param.verbose, 'normal')\n current_mean_seg = self.find_coregistration(mean_seg=current_mean_seg, transfo_type=transfo)\n\n resulting_mean_seg = current_mean_seg\n\n return resulting_mean_seg", "metadata": "root.ModelDictionaryBySlice.seg_coregistration", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 931 }, { "content": " def find_coregistration(self, mean_seg=None, transfo_type='Rigid', first=True):\n \"\"\"\n For each segmentation slice, apply and save a registration of the specified type of transformation\n the name of the registration file (usually a matlab matrix) is saved in self.RtoM\n\n :param mean_seg: current mean segmentation\n\n :param transfo_type: type of transformation for the registration\n\n :return mean seg: updated mean segmentation\n \"\"\"\n\n if self.param.seg_type == 'gm-model':\n # Coregistraion of the gray matter segmentations\n for dic_slice in self.slices:\n name_j_transform = 'transform_slice_' + str(dic_slice.id) + find_ants_transfo_name(transfo_type)[0]\n new_reg_list = dic_slice.reg_to_M.append(name_j_transform)\n dic_slice.set(reg_to_m=new_reg_list)\n\n if first:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.gm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n\n dic_slice.set(gm_seg_m=seg_m.astype(int))\n dic_slice.set(gm_seg_m_flat=seg_m.flatten().astype(int))\n\n mean_seg = compute_majority_vote_mean_seg([dic_slice.gm_seg_M for dic_slice in self.slices])\n\n else:\n # Coregistraion of the white matter segmentations\n for dic_slice in self.slices:\n name_j_transform = 'transform_slice_' + str(dic_slice.id) + find_ants_transfo_name(transfo_type)[0]\n new_reg_list = dic_slice.reg_to_M.append(name_j_transform)\n dic_slice.set(reg_to_m=new_reg_list)\n\n if first:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n else:\n seg_m = apply_ants_transfo(mean_seg, dic_slice.wm_seg_M, transfo_name=name_j_transform, path=self.model_dic_name + '/', transfo_type=transfo_type)\n dic_slice.set(wm_seg_m=seg_m.astype(int))\n dic_slice.set(wm_seg_m_flat=seg_m.flatten().astype(int))\n\n mean_seg = compute_majority_vote_mean_seg([dic_slice.wm_seg_M for dic_slice in self.slices])\n\n save_image(mean_seg, 'mean_seg', path=self.model_dic_name+'/', im_type='uint8')\n return mean_seg", "metadata": "root.ModelDictionaryBySlice.find_coregistration", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 957 }, { "content": " def compute_mean_dic_image(self, im_data_set):\n \"\"\"\n Compute the mean image of the dictionary\n\n Used to co-register the dictionary images into teh common groupwise space\n\n :param im_data_set:\n :return mean: mean image of the input data set\n \"\"\"\n mean = np.sum(im_data_set, axis=0)\n\n mean /= float(self.J)\n\n return mean", "metadata": "root.ModelDictionaryBySlice.compute_mean_dic_image", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1006 }, { "content": " def coregister_data(self, transfo_to_apply=None):\n \"\"\"\n Apply to each image slice of the dictionary the transformations found registering the segmentation slices.\n The co_registered images are saved for each slice as im_M\n\n :param transfo_to_apply: list of string\n :return:\n \"\"\"\n list_im = [dic_slice.im for dic_slice in self.slices]\n list_gm_seg = [dic_slice.gm_seg for dic_slice in self.slices]\n\n for dic_slice in self.slices:\n for n_transfo, transfo in enumerate(transfo_to_apply):\n im_m = apply_ants_transfo(self.compute_mean_dic_image(list_im), dic_slice.im, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n # apply_2D_rigid_transformation(self.im[j], self.RM[j]['tx'], self.RM[j]['ty'], self.RM[j]['theta'])\n if self.param.seg_type == 'gm':\n gm_seg_m = apply_ants_transfo(self.compute_mean_dic_image(list_gm_seg), dic_slice.gm_seg, search_reg=False, transfo_name=dic_slice.reg_to_M[n_transfo], binary=False, path=self.model_dic_name+'/', transfo_type=transfo)\n\n dic_slice.set(im_m=im_m)\n dic_slice.set(im_m_flat=im_m.flatten())\n if self.param.seg_type == 'gm':\n dic_slice.set(gm_seg_m=gm_seg_m)\n dic_slice.set(gm_seg_m_flat=gm_seg_m.flatten())", "metadata": "root.ModelDictionaryBySlice.coregister_data", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1022 }, { "content": " def load_model_dictionary(self):\n \"\"\"\n Load the model dictionary from a saved one\n \"\"\"\n import itertools\n\n sct.printv('\\nLoading the model dictionary ...', self.param.verbose, 'normal')\n\n j_im = 0\n j_seg = 0\n j_im_m = 0\n j_seg_m = 0\n\n for subject_dir in os.listdir(self.model_dic_name):\n subject_path = self.model_dic_name + '/' + subject_dir\n if os.path.isdir(subject_path) and 'transformations' not in subject_path:\n\n for file_name in os.listdir(subject_path):\n if '_im.nii' in file_name:\n reg_list = ['transform_slice_' + str(j_im) + find_ants_transfo_name(transfo_type)[0]\n for transfo_type in self.coregistration_transfos]\n\n slice_level = 0\n name_list = file_name.split('_')\n for word in name_list:\n if word in self.level_label.values():\n slice_level = get_key_from_val(self.level_label, word)\n\n self.slices.append(Slice(slice_id=j_im, im=Image(subject_path + '/' + file_name).data,\n level=slice_level, reg_to_m=reg_list))\n j_im += 1\n\n if '_seg.nii' in file_name:\n self.slices[j_seg].set(seg=Image(subject_path + '/' + file_name).data)\n j_seg += 1\n\n if '_im_model_space.nii' in file_name:\n im_m_slice = Image(subject_path + '/' + file_name).data\n self.slices[j_im_m].set(im_m=im_m_slice, im_m_flat=im_m_slice.flatten())\n j_im_m += 1\n\n if '_seg_model_space.nii' in file_name:\n seg_m_slice = Image(subject_path + '/' + file_name).data\n self.slices[j_seg_m].set(seg_m=seg_m_slice, seg_m_flat=seg_m_slice.flatten())\n j_seg_m += 1\n\n # number of atlases in the dictionary\n self.J = len(self.slices) # len([slice.im for slice in self.slices])\n\n # dimension of the data (flatten slices)\n self.N = len(self.slices[0].im_M.flatten())\n\n self.mean_image = Image(self.model_dic_name + '/mean_image.nii.gz').data\n self.mean_seg = Image(self.model_dic_name + '/mean_seg.nii.gz').data", "metadata": "root.ModelDictionaryBySlice.load_model_dictionary", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1051 }, { "content": " def show_data(self):\n \"\"\"\n show the 10 first slices of the model dictionary\n \"\"\"\n for dic_slice in self.slices[:10]:\n fig = plt.figure()\n\n seg_subplot = fig.add_subplot(2, 3, 1)\n seg_subplot.set_title('Original space - seg')\n im_seg = seg_subplot.imshow(dic_slice.wm_seg)\n im_seg.set_interpolation('nearest')\n im_seg.set_cmap('gray')\n\n seg_m_subplot = fig.add_subplot(2, 3, 2)\n seg_m_subplot.set_title('Common groupwise space - seg')\n im_seg_m = seg_m_subplot.imshow(dic_slice.wm_seg_M)\n im_seg_m.set_interpolation('nearest')\n im_seg_m.set_cmap('gray')\n\n mean_seg_subplot = fig.add_subplot(2, 3, 3)\n mean_seg_subplot.set_title('Mean seg')\n im_mean_seg = mean_seg_subplot.imshow(np.asarray(self.mean_seg))\n im_mean_seg.set_interpolation('nearest')\n im_mean_seg.set_cmap('gray')\n\n slice_im_subplot = fig.add_subplot(2, 3, 4)\n slice_im_subplot.set_title('Original space - data ')\n im_slice_im = slice_im_subplot.imshow(dic_slice.im)\n im_slice_im.set_interpolation('nearest')\n im_slice_im.set_cmap('gray')\n\n slice_im_m_subplot = fig.add_subplot(2, 3, 5)\n slice_im_m_subplot.set_title('Common groupwise space - data ')\n im_slice_im_m = slice_im_m_subplot.imshow(dic_slice.im_M)\n im_slice_im_m.set_interpolation('nearest')\n im_slice_im_m.set_cmap('gray')\n\n plt.suptitle('Slice ' + str(dic_slice.id))\n plt.show()", "metadata": "root.ModelDictionaryBySlice.show_data", "header": "['class', 'ModelDictionaryBySlice', ':', '___EOS___']", "index": 1107 }, { "content": "class Model:\n \"\"\"\n Model used by the supervised gray matter segmentation method\n\n \"\"\"\n\n # ----------------------------------------------------------------------------------------------------------------------", "metadata": "root.Model", "header": "['module', '___EOS___']", "index": 1150 }, { "content": " def __init__(self, model_param=None, dictionary=None, k=0.8):\n \"\"\"\n Model constructor\n\n :param model_param: model parameters, type: Param\n\n :param dictionary: type: ModelDictionary\n\n :param k: Amount of variability to keep in the PCA reduced space, type: float\n \"\"\"\n if model_param is None:\n if dictionary is not None:\n self.param = dictionary.param\n else:\n self.param = Param()\n else:\n self.param = model_param\n\n self.dictionary = dictionary\n\n sct.printv(\"The shape of the dictionary used for the PCA is \"\n \"(\" + str(self.dictionary.N) + \",\" + str(self.dictionary.J) + \")\", verbose=self.param.verbose)\n\n # Instantiate a PCA object given the dictionary just build\n sct.printv('\\nCreating a reduced common space (using a PCA) ...', self.param.verbose, 'normal')\n\n if self.param.todo_model == 'compute':\n # creation of a PCA\n self.pca = PCA(np.asarray(self.dictionary.slices), k=k)\n # updating the dictionary mean_image \n self.dictionary.mean_image = self.pca.mean_image\n\n save_image(self.pca.mean_image, 'mean_image', path=self.dictionary.model_dic_name+'/')\n # saving the PCA data into a text file\n self.pca.save_data(self.dictionary.model_dic_name)\n\n elif self.param.todo_model == 'load':\n # loading PCA data from file\n pca_mean_data, pca_eig_pairs = self.load_pca_file()\n\n # creation of a PCA from the loaded data\n self.pca = PCA(np.asarray(self.dictionary.slices), mean_vect=pca_mean_data, eig_pairs=pca_eig_pairs, k=k)\n if self.param.verbose == 2:\n self.pca.plot_projected_dic()", "metadata": "root.Model.__init__", "header": "['class', 'Model', ':', '___EOS___']", "index": 1155 }, { "content": " def load_pca_file(self, file_name='data_pca.txt'):\n \"\"\"\n Load a PCA from a text file containing the appropriate information (previously saved)\n\n :param file_name: name of the PCA text file\n \"\"\"\n fic_data_pca = open(self.param.path_dictionary + '/' + file_name, 'r')\n mean_data_list = fic_data_pca.readline().split(',')\n eig_pairs_list = fic_data_pca.readline().split(',')\n fic_data_pca.close()\n\n mean_data_vect = []\n for val in mean_data_list:\n mean_data_vect.append([float(val)])\n mean_data_vect = np.asarray(mean_data_vect)\n\n eig_pairs_vect = []\n for pair in eig_pairs_list:\n eig_val_str, eig_vect_str = pair.split(';')\n eig_vect_str = eig_vect_str.split(' ')\n # eig_vect_str[-1] = eig_vect_str[-1][:-1]\n eig_vect = []\n for i, v in enumerate(eig_vect_str):\n if v != '' and v != '\\n':\n eig_vect.append(float(v))\n eig_pairs_vect.append((float(eig_val_str), eig_vect))\n\n return mean_data_vect, eig_pairs_vect", "metadata": "root.Model.load_pca_file", "header": "['class', 'Model', ':', '___EOS___']", "index": 1201 }, { "content": "class TargetSegmentationPairwise:\n \"\"\"\n Contains all the function to segment the gray matter an a target image given a model\n\n - registration of the target to the model space\n\n - projection of the target slices on the reduced model space\n\n - selection of the model slices most similar to the target slices\n\n - computation of the resulting target segmentation by label fusion of their segmentation\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def select_k_slices_old(self, beta, poped=None):\n \"\"\"\n Select the K dictionary slices most similar to the target slice\n\n :param beta: Dictionary similarities\n\n :return selected: numpy array of index of the selected dictionary slices\n \"\"\"\n selected = []\n\n slices_index = range(self.model.dictionary.J)\n if poped is not None:\n slices_index.pop(poped)\n\n if isinstance(beta[0], (list, np.ndarray)):\n for beta_slice in beta:\n selected_by_slice = []\n for j, beta_j in zip(slices_index, beta_slice):\n if beta_j > self.epsilon:\n selected_by_slice.append(j)\n # selected.append(np.asarray(selected_by_slice))\n selected.append(selected_by_slice)\n else:\n for j, beta_j in zip(slices_index, beta):\n if beta_j > self.epsilon:\n selected.append(j)\n\n return np.asarray(selected)\n\n def label_fusion_old(self, selected_slices):\n \"\"\"\n Compute the resulting segmentation by label fusion of the segmentation of the selected dictionary slices\n\n :param selected_slices: array of indexes of the selected dictionary slices\n\n :return res_seg_model_space: Image of the resulting segmentation for the target image (in the model space)\n \"\"\"\n res_seg_model_space = []\n\n if isinstance(selected_slices[0], (list, np.ndarray)):\n for i_target, selected_by_slice in enumerate(selected_slices):\n kept_slices_segmentation = []\n for j in selected_by_slice:\n kept_slices_segmentation.append(self.model.dictionary.slices[j].seg_M)\n slice_seg = compute_majority_vote_mean_seg(kept_slices_segmentation)\n res_seg_model_space.append(slice_seg)\n else:\n kept_slices_segmentation = []\n for j in selected_slices:\n kept_slices_segmentation.append(self.model.dictionary.slices[j].seg_M)\n slice_seg = compute_majority_vote_mean_seg(kept_slices_segmentation)\n res_seg_model_space = slice_seg\n\n res_seg_model_space = np.asarray(res_seg_model_space)\n # save_image(res_seg_model_space, 'res_GM_seg_model_space')\n\n return Image(res_seg_model_space)\n '''\n\n # ------------------------------------------------------------------------------------------------------------------\n\n\n # ------------------------------------------------------------------------------------------------------------------\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def majority_vote_segmentation(self):\n \"\"\"\n Mean segmentation using only the slices of the same level in the dictionary\n \"\"\"\n target_seg = []\n for target_slice in self.target:\n dataset_by_level = []\n for dic_slice in self.model.dictionary.slices:\n if dic_slice.level == target_slice.level:\n dataset_by_level.append(dic_slice.seg_M)\n if dataset_by_level:\n target_slice_seg = compute_majority_vote_mean_seg(dataset_by_level, threshold=0.5)\n Image(param=target_slice_seg, absolutepath='target_gm_seg_slice' + str(target_slice.id) + '.nii.gz').save()\n target_seg.append(target_slice_seg)\n else:\n target_seg.append(np.zeros(target_slice.im.shape))\n Image(param=np.asarray(target_seg), absolutepath='target_gm_seg.nii.gz').save()\n '''\n\n '''\n # ------------------------------------------------------------------------------------------------------------------\n def show_projected_target(self):\n # Retrieving projected image from the mean image & its coordinates\n import copy\n\n index = 0\n fig1 = plt.figure()\n fig2 = plt.figure()\n # loop across all the projected slices coord\n for coord in self.coord_projected_target:\n img_reducted = copy.copy(self.model.pca.mean_data_vect)\n # loop across coord and build projected image\n for i in range(0, coord.shape[0]):\n img_reducted += int(coord[i][0]) * self.model.pca.kept_modes.T[i].reshape(self.model.pca.N, 1)\n\n if self.model.param.split_data:\n n = int(sqrt(self.model.pca.N * 2))\n else:\n n = int(sqrt(self.model.pca.N))\n\n # Plot original image\n orig_ax = fig1.add_subplot(10, 3, index)\n orig_ax.set_title('original slice {} '.format(index))\n if self.model.param.split_data:\n imgplot = orig_ax.imshow(self.target.data[index, :, :].reshape(n / 2, n))\n else:\n imgplot = orig_ax.imshow(self.target.data[index].reshape(n, n))\n imgplot.set_interpolation('nearest')\n imgplot.set_cmap('gray')\n # plt.title('Original Image')\n # plt.show()\n\n index += 1\n # Plot projected image image\n proj_ax = fig2.add_subplot(10, 3, index)\n proj_ax.set_title('slice {} projected'.format(index))\n if self.model.param.split_data:\n imgplot = proj_ax.imshow(img_reducted.reshape(n / 2, n))\n #imgplot = plt.imshow(img_reducted.reshape(n / 2, n))\n else:\n # imgplot = plt.imshow(img_reducted.reshape(n, n))\n imgplot = proj_ax.imshow(img_reducted.reshape(n, n))\n imgplot.set_interpolation('nearest')\n imgplot.set_cmap('gray')\n # plt.title('Projected Image')\n # plt.show()\n plt.show()\n '''", "metadata": "root.TargetSegmentationPairwise", "header": "['module', '___EOS___']", "index": 1233 }, { "content": " def __init__(self, model, target_image=None, levels_image=None, tau=None):\n \"\"\"\n Target gray matter segmentation constructor\n\n :param model: Model used to compute the segmentation, type: Model\n\n :param target_image: Target image to segment gray matter on, type: Image\n\n :param tau: Weighting parameter associated with the geodesic distances in the model dictionary, type: float\n \"\"\"\n self.model = model\n\n # Get the target image\n if len(target_image.data.shape) == 3:\n self.target = [Slice(slice_id=i_slice, im=target_slice) for i_slice, target_slice in enumerate(target_image.data)]\n elif len(target_image.data.shape) == 2:\n self.target = [Slice(slice_id=0, im=target_image.data)]\n\n # if levels_image is not None:\n if isinstance(levels_image, Image):\n nz_coord = levels_image.getNonZeroCoordinates()\n for i_level_slice, level_slice in enumerate(levels_image.data):\n nz_val = []\n for coord in nz_coord:\n if coord.x == i_level_slice:\n nz_val.append(level_slice[coord.y, coord.z])\n try:\n self.target[i_level_slice].set(level=int(round(sum(nz_val)/len(nz_val))))\n except ZeroDivisionError:\n sct.printv('No level label for slice ' + str(i_level_slice) + ' of target')\n self.target[i_level_slice].set(level=0)\n elif isinstance(levels_image, str):\n self.target[0].set(level=get_key_from_val(self.model.dictionary.level_label, levels_image))\n\n # self.majority_vote_segmentation()\n\n # self.target_M = self.target_pairwise_registration()\n self.target_pairwise_registration()\n\n # coord_projected_target is a list of all the coord of the target's projected slices\n sct.printv('\\nProjecting the target image in the reduced common space ...', model.param.verbose, 'normal')\n # self.coord_projected_target = model.pca.project(self.target_M) if self.target_M is not None else None\n self.coord_projected_target = model.pca.project([target_slice.im_M for target_slice in self.target])\n\n self.epsilon = round(1.0/self.model.dictionary.J, 4)/2\n print 'epsilon : ', self.epsilon\n\n if tau is None:\n self.tau = self.compute_tau()\n else:\n self.tau = tau\n\n if levels_image is not None:\n self.beta = self.compute_beta(self.coord_projected_target, target_levels=np.asarray([target_slice.level for target_slice in self.target]), tau=self.tau)\n else:\n self.beta = self.compute_beta(self.coord_projected_target, tau=self.tau)\n\n sct.printv('\\nSelecting the dictionary slices most similar to the target ...', model.param.verbose, 'normal')\n\n self.selected_k_slices = self.select_k_slices(self.beta)\n\n slice_levels = np.asarray([self.model.dictionary.level_label[dic_slice.level] for dic_slice in self.model.dictionary.slices])\n fic_selected_slices = open('selected_slices.txt', 'w')\n fic_selected_slices.write(str(slice_levels[self.selected_k_slices.reshape(self.model.dictionary.J,)]))\n fic_selected_slices.close()\n\n sct.printv('\\nComputing the result gray matter segmentation ...', model.param.verbose, 'normal')\n # self.target_GM_seg_M = self.label_fusion(self.selected_k_slices)\n self.label_fusion(self.selected_k_slices)\n\n sct.printv('\\nRegistering the result gray matter segmentation back into the target original space...',\n model.param.verbose, 'normal')\n self.target_pairwise_registration(inverse=True)", "metadata": "root.TargetSegmentationPairwise.__init__", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1245 }, { "content": " def target_pairwise_registration(self, inverse=False):\n \"\"\"\n Register the target image into the model space\n\n Affine (or rigid + affine) registration of the target on the mean model image --> pairwise\n\n :param inverse: if True, apply the inverse warping field of the registration target -> model space\n to the result gray matter segmentation of the target\n (put it back in it's original space)\n \"\"\"\n if not inverse:\n # Registration target --> model space\n target_model_space = []\n mean_dic_im = self.model.pca.mean_image\n for i, target_slice in enumerate(self.target):\n moving_target_slice = target_slice.im\n for transfo in self.model.dictionary.coregistration_transfos:\n transfo_name = transfo + '_transfo_target2model_space_slice_' + str(i) + find_ants_transfo_name(transfo)[0]\n\n moving_target_slice = apply_ants_transfo(mean_dic_im, moving_target_slice, binary=False, transfo_type=transfo, transfo_name=transfo_name)\n self.target[i].set(im_m=moving_target_slice)\n # target_model_space.append(moving_target_slice)\n # return Image(param=np.asarray(target_model_space))\n else:\n # Inverse registration result in model space --> target original space\n res_seg = []\n # mean_dic_im = self.model.pca.mean_image\n\n # for i, slice_M in enumerate(self.target_GM_seg_M.data):\n for i, target_slice in enumerate(self.target):\n if self.model.param.seg_type == 'wm':\n moving_seg_slice = target_slice.wm_seg_M\n else:\n moving_seg_slice = target_slice.gm_seg_M\n\n for transfo in self.model.dictionary.coregistration_transfos:\n transfo_name = transfo + '_transfo_target2model_space_slice_' + str(i) + find_ants_transfo_name(transfo)[0]\n moving_seg_slice = apply_ants_transfo(self.model.dictionary.mean_seg, moving_seg_slice, search_reg=False, binary=True, inverse=1, transfo_type=transfo, transfo_name=transfo_name)\n\n if self.model.param.seg_type == 'wm':\n target_slice.set(wm_seg=moving_seg_slice)\n else:\n target_slice.set(gm_seg=moving_seg_slice)\n # res_seg.append(moving_seg_slice)\n # return Image(param=np.asarray(res_seg))", "metadata": "root.TargetSegmentationPairwise.target_pairwise_registration", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1320 }, { "content": " def compute_beta(self, coord_target, target_levels=None, dataset_coord=None, dataset_levels=None, tau=0.01):\n \"\"\"\n Compute the model similarity (beta) between each model slice and each target image slice\n\n beta_j = (1/Z)exp(-tau*square_norm(target_coordinate - slice_j_coordinate))\n\n Z is the partition function that enforces the constraint that sum(beta)=1\n\n :param coord_target: coordinates of the target image in the reduced model space\n\n :param tau: weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n\n :return:\n \"\"\"\n if dataset_coord is None:\n # in the dataset_coord matrix, each column correspond to the projection of one of the original data image,\n # the transpose operator .T enable the loop to iterate over all the images coord\n dataset_coord = self.model.pca.dataset_coord.T\n dataset_levels = [dic_slice.level for dic_slice in self.model.dictionary.slices]\n\n beta = []\n\n # TODO: SEE IF WE NEED TO CHECK THE SECOND DIMENSION OF COORD TARGET OR THE FIRST ...\n if isinstance(coord_target[0], (list, np.ndarray)):\n for i_target, coord_projected_slice in enumerate(coord_target):\n beta_slice = []\n for j_slice, coord_slice_j in enumerate(dataset_coord):\n square_norm = np.linalg.norm((coord_projected_slice - coord_slice_j), 2)\n if target_levels is not None:\n if target_levels[i_target] == dataset_levels[j_slice]:\n beta_slice.append(exp(tau*square_norm))\n else:\n beta_slice.append(exp(-tau*square_norm)/1.2*(target_levels[i_target] - dataset_levels[j_slice]))\n else:\n beta_slice.append(exp(tau*square_norm))\n\n try:\n beta_slice /= np.sum(beta_slice)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta_slice\n\n beta.append(beta_slice)\n else:\n for j_slice, coord_slice_j in enumerate(dataset_coord):\n square_norm = np.linalg.norm((coord_target - coord_slice_j), 2)\n if target_levels is not None:\n if target_levels == dataset_levels[j_slice]:\n beta.append(exp(tau*square_norm))\n else:\n beta.append(exp(-tau*square_norm)/1.2*(target_levels - dataset_levels[j_slice]))\n else:\n beta.append(exp(tau*square_norm))\n\n try:\n beta /= np.sum(beta)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta\n\n return np.asarray(beta)", "metadata": "root.TargetSegmentationPairwise.compute_beta", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1367 }, { "content": " def compute_tau(self):\n \"\"\"\n Compute the weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n :return:\n \"\"\"\n sct.printv('\\nComputing Tau ... \\n'\n '(Tau is a weighting parameter indicating the decay constant associated with a geodesic distance between a given atlas and a projected target image, see Asman paper, eq (16))', 1, 'normal')\n from scipy.optimize import minimize\n\n def to_minimize(tau):\n \"\"\"\n Compute the sum of the L0 norm between a slice segmentation and the resulting segmentation that would be\n found if the slice was a target image for a given tau\n\n For a given model, Tau is the parameter that would minimize this function\n\n :param tau:\n\n :return sum_norm:\n\n \"\"\"\n sum_norm = 0\n for dic_slice in self.model.dictionary.slices:\n projected_dic_slice_coord = self.model.pca.project_array(dic_slice.im_M_flat)\n coord_dic_slice_dataset = np.delete(self.model.pca.dataset_coord.T, dic_slice.id, 0)\n dic_slice_dataset_levels = np.delete(np.asarray(dic_levels), dic_slice.id, 0)\n beta_dic_slice = self.compute_beta(projected_dic_slice_coord, target_levels=dic_slice.level, dataset_coord=coord_dic_slice_dataset, dataset_levels=dic_slice_dataset_levels, tau=tau)\n kj = self.select_k_slices(beta_dic_slice) # , poped=dic_slice.id)\n est_segm_j = self.label_fusion(kj)\n\n if self.model.param.seg_type == 'wm':\n sum_norm += l0_norm(dic_slice.wm_seg_M, est_segm_j.data)\n else:\n sum_norm += l0_norm(dic_slice.gm_seg_M, est_segm_j.data)\n return sum_norm\n\n dic_levels = [dic_slice.level for dic_slice in self.model.dictionary.slices]\n\n est_tau = minimize(to_minimize, 0.001, method='Nelder-Mead', options={'xtol': 0.0005})\n sct.printv('Estimated tau : ' + str(est_tau.x[0]))\n if self.model.param.todo_model == 'compute':\n fic = open(self.model.dictionary.model_dic_name + '/tau.txt', 'w')\n fic.write(str(est_tau.x[0]))\n fic.close()\n return float(est_tau.x[0])", "metadata": "root.TargetSegmentationPairwise.compute_tau", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1431 }, { "content": " def select_k_slices(self, beta):\n \"\"\"\n Select the K dictionary slices most similar to the target slice\n\n :param beta: Dictionary similarities\n\n :return selected: numpy array of segmentation of the selected dictionary slices\n \"\"\"\n\n kept_slice_index = []\n\n if isinstance(beta[0], (list, np.ndarray)):\n for beta_slice in beta:\n selected_index = beta_slice > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices.append(segmentation_slices[selected_index])\n kept_slice_index.append(selected_index)\n\n else:\n kept_slice_index = beta > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices = segmentation_slices[selected_index]\n\n return np.asarray(kept_slice_index)", "metadata": "root.TargetSegmentationPairwise.select_k_slices", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1540 }, { "content": " def label_fusion(self, selected_index):\n \"\"\"\n Compute the resulting segmentation by label fusion of the segmentation of the selected dictionary slices\n\n :param selected_index: array of indexes (as a boolean array) of the selected dictionary slices\n\n :return res_seg_model_space: Image of the resulting segmentation for the target image (in the model space)\n \"\"\"\n if self.model.param.seg_type == 'wm':\n segmentation_slices = np.asarray([dic_slice.wm_seg_M for dic_slice in self.model.dictionary.slices])\n else:\n segmentation_slices = np.asarray([dic_slice.gm_seg_M for dic_slice in self.model.dictionary.slices])\n\n res_seg_model_space = []\n '''\n print '---------- IN LABEL_FUSION : shape selected_k_slices ---------------->', selected_k_slices.shape,\n ' len = ', len(selected_k_slices.shape)\n print '---------- IN LABEL_FUSION : type selected_k_slices[0] ---------------->', type(selected_k_slices[0])\n '''\n # if isinstance(selected_slices[0][0][0], (list, np.ndarray)):\n # if len(selected_slices[0].shape) == 3:\n if isinstance(selected_index[0], (list, np.ndarray)):\n\n for i, selected_ind_by_slice in enumerate(selected_index): # selected_slices:\n slice_seg = compute_majority_vote_mean_seg(segmentation_slices[selected_ind_by_slice])\n res_seg_model_space.append(slice_seg)\n if self.model.param.seg_type == 'wm':\n self.target[i].set(wm_seg_m=slice_seg)\n else:\n self.target[i].set(gm_seg_m=slice_seg)\n # res_seg_model_space = map(compute_majority_vote_mean_seg, selected_slices)\n\n else:\n # res_seg_model_space = compute_majority_vote_mean_seg(selected_slices)\n res_seg_model_space = compute_majority_vote_mean_seg(segmentation_slices[selected_index])\n\n res_seg_model_space = np.asarray(res_seg_model_space)\n # save_image(res_seg_model_space, 'res_GM_seg_model_space')\n\n return Image(param=res_seg_model_space)", "metadata": "root.TargetSegmentationPairwise.label_fusion", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1571 }, { "content": " def plot_projected_dic(self, nb_modes=3):\n \"\"\"\n plot the pca first modes and the target projection if target is provided.\n\n on a second plot, highlight the selected dictionary slices for one target slice in particular\n\n :param nb_modes:\n :return:\n \"\"\"\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()\n\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target, to_highlight=(5, self.selected_k_slices[5])) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()", "metadata": "root.TargetSegmentationPairwise.plot_projected_dic", "header": "['class', 'TargetSegmentationPairwise', ':', '___EOS___']", "index": 1613 }, { "content": "class TargetSegmentationGroupwise:\n \"\"\"\n Contains all the function to segment the gray matter an a target image given a model\n\n - registration of the target to the model space\n\n - projection of the target slices on the reduced model space\n\n - selection of the model slices most similar to the target slices\n\n - computation of the resulting target segmentation by label fusion of their segmentation\n \"\"\"\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n # ------------------------------------------------------------------------------------------------------------------\n\n\n # ------------------------------------------------------------------------------------------------------------------", "metadata": "root.TargetSegmentationGroupwise", "header": "['module', '___EOS___']", "index": 1702 }, { "content": " def __init__(self, model, target_image=None, tau=None):\n \"\"\"\n Target gray matter segmentation constructor\n\n :param model: Model used to compute the segmentation, type: Model\n\n :param target_image: Target image to segment gray matter on, type: Image\n\n :param tau: Weighting parameter associated with the geodesic distances in the model dictionary, type: float\n \"\"\"\n self.model = model\n\n # Get the target image\n self.target = target_image\n '''\n save_image(self.target.data, 'target_image')\n print '---TARGET IMAGE IN CLASS TargetSegmentation : ', self.target.data\n save_image(self.target.data[0],'target_slice0_targetSeg_'+self.model.param.todo_model)\n '''\n self.epsilon = round(1.0/self.model.dictionary.J, 5) - 0.0001 # /2\n\n if tau is None:\n self.tau = self.compute_tau()\n else:\n self.tau = tau\n\n self.target_M, self.R_target_to_M = self.target_groupwise_registration()\n self.target_M.file_name = 'target_model_space'\n self.target_M.ext = '.nii.gz'\n # self.target_M.data = self.target_M.data.astype('float32')\n self.target_M.save()\n\n '''\n print '----- registered target ---- ', self.target_M.data\n save_image(self.target_M.data, 'target_image_model_space')\n save_image(self.target_M.data[0],'target_registered_slice0_rigidreg_'+self.model.param.todo_model)\n '''\n\n # coord_projected_target is a list of all the coord of the target's projected slices\n sct.printv('\\nProjecting the target image in the reduced common space ...', model.param.verbose, 'normal')\n self.coord_projected_target = model.pca.project(self.target_M) if self.target_M is not None else None\n\n '''\n print '----SHAPE COORD PROJECTED TARGET -----', self.coord_projected_target.shape\n print '----COORD PROJECTED TARGET -----', self.coord_projected_target\n '''\n\n self.beta = self.compute_beta(self.coord_projected_target, tau=self.tau)\n '''\n print '----------- BETAS :', self.beta\n self.beta = self.compute_beta(self.coord_projected_target, tau=0.00114)\n '''\n sct.printv('\\nSelecting the dictionary slices most similar to the target ...', model.param.verbose, 'normal')\n\n self.selected_k_slices = self.select_k_slices(self.beta)\n '''\n print '----SELECTED K -----', self.selected_k_slices\n print '----SHAPE SELECTED K -----', self.selected_k_slices.shape\n '''\n sct.printv('\\nComputing the result gray matter segmentation ...', model.param.verbose, 'normal')\n self.target_GM_seg_M = self.label_fusion(self.selected_k_slices)\n self.target_GM_seg_M.file_name = 'res_gmseg_model_space'\n self.target_GM_seg_M.ext = '.nii.gz'\n # self.target_M.data = self.target_M.data.astype('float32')\n self.target_GM_seg_M.save()\n sct.printv('\\nRegistering the result gray matter segmentation back into the target original space...',\n model.param.verbose, 'normal')\n self.target_GM_seg = self.target_groupwise_registration(inverse=True)", "metadata": "root.TargetSegmentationGroupwise.__init__", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1714 }, { "content": " def compute_beta(self, coord_target, dataset_coord=None, tau=0.01):\n \"\"\"\n Compute the model similarity (beta) between each model slice and each target image slice\n\n beta_j = (1/Z)exp(-tau*square_norm(target_coordinate - slice_j_coordinate))\n\n Z is the partition function that enforces the constraint that sum(beta)=1\n\n :param coord_target: coordinates of the target image in the reduced model space\n\n :param tau: weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n\n :return:\n \"\"\"\n if dataset_coord is None:\n # in the dataset_coord matrix, each column correspond to the projection of one of the original data image,\n # the transpose operator .T enable the loop to iterate over all the images coord\n dataset_coord = self.model.pca.dataset_coord.T\n\n beta = []\n '''\n sct.printv('----------- COMPUTING BETA --------------', 1, 'info')\n print '------ TAU = ', tau\n print '---------- IN BETA : coord_target ---------------->', coord_target\n print '---------- IN BETA : shape coord_target ---------------->', coord_target.shape, ' len = ',\n len(coord_target.shape)\n print '---------- IN BETA : type coord_target[0][0] ---------------->', type(coord_target[0][0])\n '''\n # TODO: SEE IF WE NEED TO CHECK THE SECOND DIMENSION OF COORD TARGET OR THE FIRST ...\n if isinstance(coord_target[0], (list, np.ndarray)):\n for i_target, coord_projected_slice in enumerate(coord_target):\n beta_slice = []\n for coord_slice_j in dataset_coord:\n square_norm = np.linalg.norm((coord_projected_slice - coord_slice_j), 2)\n beta_slice.append(exp(-tau*square_norm))\n\n '''\n print 'beta case 1 :', beta\n print '--> sum beta ', Z\n '''\n try:\n if np.sum(beta_slice) != 0:\n beta_slice /= np.sum(beta_slice)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta_slice\n\n beta.append(beta_slice)\n else:\n for coord_slice_j in dataset_coord:\n square_norm = np.linalg.norm((coord_target - coord_slice_j), 2)\n beta.append(exp(-tau*square_norm))\n\n try:\n beta /= np.sum(beta)\n except ZeroDivisionError:\n sct.printv('WARNING : similarities are null', self.model.param.verbose, 'warning')\n print beta\n\n return np.asarray(beta)", "metadata": "root.TargetSegmentationGroupwise.compute_beta", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1784 }, { "content": " def compute_tau(self):\n \"\"\"\n Compute the weighting parameter indicating the decay constant associated with a geodesic distance\n between a given dictionary slice and a projected target image slice\n :return:\n \"\"\"\n sct.printv('\\nComputing Tau ... \\n'\n '(Tau is a weighting parameter indicating the decay constant associated with a geodesic distance '\n 'between a given atlas and a projected target image, see Asman paper, eq (16))', 1, 'normal')\n from scipy.optimize import minimize\n\n def to_minimize(tau):\n \"\"\"\n Compute the sum of the L0 norm between a slice segmentation and the resulting segmentation that would be\n found if the slice was a target image for a given tau\n\n For a given model, Tau is the parameter that would minimize this function\n\n :param tau:\n\n :return sum_norm:\n\n \"\"\"\n sum_norm = 0\n for dic_slice in self.model.dictionary.slices:\n projected_dic_slice_coord = self.model.pca.project_array(dic_slice.im_M_flat)\n\n coord_dic_slice_dataset = np.delete(self.model.pca.dataset_coord.T, dic_slice.id, 0)\n\n beta_dic_slice = self.compute_beta(projected_dic_slice_coord, dataset_coord=coord_dic_slice_dataset,\n tau=tau)\n kj = self.select_k_slices(beta_dic_slice) # , poped=dic_slice.id)\n est_segm_j = self.label_fusion(kj)\n\n sum_norm += l0_norm(dic_slice.seg_M, est_segm_j.data)\n return sum_norm\n\n est_tau = minimize(to_minimize, 0, method='Nelder-Mead', options={'xtol': 0.0005})\n sct.printv('Estimated tau : ' + str(est_tau.x[0]))\n if self.model.param.todo_model == 'compute':\n fic = open(self.model.dictionary.model_dic_name + '/tau.txt', 'w')\n fic.write(str(est_tau.x[0]))\n fic.close()\n return float(est_tau.x[0])", "metadata": "root.TargetSegmentationGroupwise.compute_tau", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1847 }, { "content": " def compute_mu(self, beta):\n \"\"\"\n Compute the weighted mean of the dictionary slices projection weights\n\n :param beta: similarities vector for one target slice\n\n :return mu:\n \"\"\"\n '''\n mu = []\n for beta_slice in beta:\n mu.append(self.model.pca.dataset_coord.dot(beta_slice))\n return np.asarray(mu)\n '''\n return self.model.pca.dataset_coord.dot(beta)", "metadata": "root.TargetSegmentationGroupwise.compute_mu", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1893 }, { "content": " def compute_sigma(self, beta, mu):\n \"\"\"\n Compute the weighted standard deviation of the dictionary slices projection weights\n\n :param beta: similarities vector for one target slice\n\n :param mu: weighted mean of the dictionary slices projection weights for one target slice\n\n :return sigma:\n \"\"\"\n '''\n sigma = []\n for beta_slice, mu_slice in zip(beta, mu):\n\n sigma.append([beta_slice.dot((self.model.pca.dataset_coord[v, :] - mu_slice[v]) ** 2)\n for v in range(len(mu_slice))])\n\n return np.asarray(sigma)\n '''\n return np.asarray([beta.dot((self.model.pca.dataset_coord[v, :] - mu[v]) ** 2) for v in range(len(mu))])", "metadata": "root.TargetSegmentationGroupwise.compute_sigma", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1910 }, { "content": " def target_groupwise_registration(self, inverse=False):\n \"\"\"\n Register the target image into the model space\n\n Affine (or rigid + affine) registration of the target on the mean model image --> pairwise\n\n :param inverse: if True, apply the inverse warping field of the registration target -> model space\n to the result gray matter segmentation of the target\n (put it back in it's original space)\n \"\"\"\n if not inverse:\n # Registration target --> model space\n from scipy.optimize import minimize\n\n # Initialisation\n target_m = []\n\n def to_minimize(t_param, n_slice):\n \"\"\"\n\n :param :\n\n :return sum_norm:\n\n \"\"\"\n moved_target_slice = Image(param=np.asarray(apply_2d_transformation(self.target.data[n_slice],\n tx=t_param[0], ty=t_param[1],\n theta=t_param[2],\n s=t_param[3])[0]))\n\n coord_moved_target = self.model.pca.project_array(moved_target_slice.data.flatten())\n coord_moved_target = coord_moved_target.reshape(coord_moved_target.shape[0],)\n\n beta = self.compute_beta(coord_moved_target, tau=self.tau)\n mu = self.compute_mu(beta)\n sigma = self.compute_sigma(beta, mu)\n\n target_th_slice = np.sum((np.asarray([dic_slice.im_M for dic_slice in self.model.dictionary.slices]).T\n * beta[n_slice]).T, axis=0)\n sq_norm = np.linalg.norm(target_th_slice - moved_target_slice.data, 2)**2\n\n gauss = np.sum(((coord_moved_target - mu)/sigma)**2)\n return sq_norm*gauss\n\n r_target_to_m = []\n for i_slice, target_slice in enumerate(self.target.data):\n x0 = [0, 0, 0, 1]\n est_transfo = minimize(to_minimize, x0, args=i_slice, method='Nelder-Mead', options={'xtol': 0.00005})\n target_m_slice, r_slice = apply_2d_transformation(target_slice, tx=est_transfo.x[0],\n ty=est_transfo.x[1], theta=est_transfo.x[2],\n s=est_transfo.x[3])\n print est_transfo.x\n target_m.append(target_m_slice)\n r_target_to_m.append(r_slice)\n return Image(param=np.asarray(target_m)), r_target_to_m\n\n else:\n # Inverse registration result in model space --> target original space\n moved_res = []\n for i_slice, res_m_slice in enumerate(self.target_GM_seg_M.data):\n moved_res.append(apply_2d_transformation(res_m_slice, transfo=self.R_target_to_M[i_slice].inverse)[0])\n return Image(np.asarray(moved_res).astype('uint8'))", "metadata": "root.TargetSegmentationGroupwise.target_groupwise_registration", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1932 }, { "content": " def select_k_slices(self, beta):\n \"\"\"\n Select the K dictionary slices most similar to the target slice\n\n :param beta: Dictionary similarities\n\n :return selected: numpy array of segmentation of the selected dictionary slices\n \"\"\"\n\n kept_slice_index = []\n\n if isinstance(beta[0], (list, np.ndarray)):\n for beta_slice in beta:\n selected_index = beta_slice > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices.append(segmentation_slices[selected_index])\n kept_slice_index.append(selected_index)\n\n else:\n kept_slice_index = beta > self.epsilon\n '''\n if poped is not None:\n selected_index = np.delete(selected_index, poped)\n '''\n # kept_seg_slices = segmentation_slices[selected_index]\n\n return np.asarray(kept_slice_index)", "metadata": "root.TargetSegmentationGroupwise.select_k_slices", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 1996 }, { "content": " def label_fusion(self, selected_index):\n \"\"\"\n Compute the resulting segmentation by label fusion of the segmentation of the selected dictionary slices\n\n :param selected_index: array of indexes (as a boolean array) of the selected dictionary slices\n\n :return res_seg_model_space: Image of the resulting segmentation for the target image (in the model space)\n \"\"\"\n segmentation_slices = np.asarray([dic_slice.seg_M for dic_slice in self.model.dictionary.slices])\n\n res_seg_model_space = []\n\n # if isinstance(selected_slices[0][0][0], (list, np.ndarray)):\n # if len(selected_slices[0].shape) == 3:\n if isinstance(selected_index[0], (list, np.ndarray)):\n\n for selected_ind_by_slice in selected_index: # selected_slices:\n slice_seg = compute_majority_vote_mean_seg(segmentation_slices[selected_ind_by_slice], threshold=0.3)\n res_seg_model_space.append(slice_seg)\n # res_seg_model_space = map(compute_majority_vote_mean_seg, selected_slices)\n\n else:\n # res_seg_model_space = compute_majority_vote_mean_seg(selected_slices)\n res_seg_model_space = compute_majority_vote_mean_seg(segmentation_slices[selected_index], threshold=0.3)\n\n res_seg_model_space = np.asarray(res_seg_model_space)\n # save_image(res_seg_model_space, 'res_GM_seg_model_space')\n\n return Image(param=res_seg_model_space)", "metadata": "root.TargetSegmentationGroupwise.label_fusion", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 2027 }, { "content": " def plot_projected_dic(self, nb_modes=3):\n \"\"\"\n plot the pca first modes and the target projection if target is provided.\n\n on a second plot, highlight the selected dictionary slices for one target slice in particular\n\n :param nb_modes:\n :return:\n \"\"\"\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()\n\n self.model.pca.plot_projected_dic(nb_mode=nb_modes, target_coord=self.coord_projected_target, to_highlight=(6, self.selected_k_slices[6])) if self.coord_projected_target is not None \\\n else self.model.pca.plot_projected_dic()\n print self.selected_k_slices[6]", "metadata": "root.TargetSegmentationGroupwise.plot_projected_dic", "header": "['class', 'TargetSegmentationGroupwise', ':', '___EOS___']", "index": 2058 }, { "content": "class GMsegSupervisedMethod():\n \"\"\"\n Gray matter segmentation supervised method:\n\n Load a dictionary (training data set), compute or load a model from this dictionary\nsct_Image\n Load a target image to segment and do the segmentation using the model\n \"\"\"\n", "metadata": "root.GMsegSupervisedMethod", "header": "['module', '___EOS___']", "index": 2077 }, { "content": " def __init__(self, target_fname, gm_seg_param=None):\n\n self.dictionary = ModelDictionaryBySlice(dic_param=gm_seg_param)\n\n sct.printv('\\nBuilding the appearance model...', verbose=gm_seg_param.verbose, type='normal')\n # build the appearance model\n self.model = Model(model_param=gm_seg_param, dictionary=self.dictionary, k=0.8)\n\n sct.printv('\\nConstructing target image ...', verbose=gm_seg_param.verbose, type='normal')\n # construct target image\n self.target_image = Image(target_fname)\n\n tau = None # 0.000765625 # 0.00025 # 0.000982421875 # 0.00090625 # None\n\n if gm_seg_param.todo_model == 'load':\n fic = open(self.model.dictionary.model_dic_name + '/tau.txt', 'r')\n tau = float(fic.read())\n fic.close()\n\n # build a target segmentation\n levels_im = None\n if gm_seg_param.level_fname is not None:\n if isinstance(gm_seg_param.level_fname, str):\n # in this case the level is a string and not an image\n levels_im = gm_seg_param.level_fname\n else:\n levels_im = Image(gm_seg_param.level_fname)\n if gm_seg_param.target_reg == 'pairwise':\n if levels_im is not None:\n self.target_seg_methods = TargetSegmentationPairwise(self.model, target_image=self.target_image, levels_image=levels_im, tau=tau)\n else:\n self.target_seg_methods = TargetSegmentationPairwise(self.model, target_image=self.target_image, tau=tau)\n\n elif gm_seg_param.target_reg == 'groupwise':\n self.target_seg_methods = TargetSegmentationGroupwise(self.model, target_image=self.target_image, tau=tau)\n\n suffix = '_'\n suffix += gm_seg_param.target_reg\n suffix += gm_seg_param.seg_type\n for transfo in self.dictionary.coregistration_transfos:\n suffix += '_' + transfo\n if levels_im is not None:\n suffix += '_with_levels'\n else:\n suffix += '_no_levels'\n\n # save the result gray matter segmentation\n # self.res_GM_seg = self.target_seg_methods.target_GM_seg\n if gm_seg_param.seg_type == 'wm':\n if len(self.target_seg_methods.target) == 1:\n self.res = Image(param=np.asarray(self.target_seg_methods.target[0].wm_seg))\n else:\n self.res = Image(param=np.asarray([target_slice.wm_seg for target_slice in self.target_seg_methods.target]))\n else:\n if len(self.target_seg_methods.target) == 1:\n self.res = Image(param=np.asarray(self.target_seg_methods.target[0].gm_seg))\n else:\n self.res = Image(param=np.asarray([target_slice.gm_seg for target_slice in self.target_seg_methods.target]))\n\n name_res = sct.extract_fname(target_fname)[1] + '_graymatterseg' + suffix # TODO: remove suffix\n self.res.file_name = name_res\n self.res.ext = '.nii.gz'\n self.res.save()\n\n '''\n save_image(self.res_GM_seg.data, name_res)\n '''\n # inverse_wmseg_to_gmseg(self.res_GM_seg, self.target_image, name_res)\n\n sct.printv('Done! \\nTo see the result, type :')\n sct.printv('fslview ' + target_fname + ' ' + name_res + '.nii.gz -l Red -t 0.4 &', gm_seg_param.verbose, 'info')", "metadata": "root.GMsegSupervisedMethod.__init__", "header": "['class', 'GMsegSupervisedMethod', '(', ')', ':', '___EOS___']", "index": 2085 }, { "content": " def show(self):\n\n sct.printv('\\nShowing the pca modes ...')\n self.model.pca.show_all_modes()\n\n sct.printv('\\nPloting Omega ...')\n self.target_seg_methods.plot_projected_dic(nb_modes=3)\n\n sct.printv('\\nShowing PCA mode graphs ...')\n self.model.pca.show_mode_variation()\n print 'J :', self.dictionary.J\n\n '''\n sct.printv('\\nShowing the projected target ...')\n self.target_seg_methods.show_projected_target()\n '''", "metadata": "root.GMsegSupervisedMethod.show", "header": "['class', 'GMsegSupervisedMethod', '(', ')', ':', '___EOS___']", "index": 2157 } ]

[ { "span": "from math import sqrt", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 21 } ]

[]

1

false

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Unused import

joonty/vim-do/autoload/python/buffer.py

[ { "content": "import vim\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class VimBuffer:\n\n\n\n\n\n\n\n", "metadata": "root.VimBuffer", "header": "['module', '___EOS___']", "index": 2 }, { "content": " def __init__(self, buffer):\n self._buffer = buffer", "metadata": "root.VimBuffer.__init__", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 3 }, { "content": " def replace(self, content):\n self._buffer[:] = content", "metadata": "root.VimBuffer.replace", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 6 }, { "content": " def line(self, number):\n return self._buffer[number]", "metadata": "root.VimBuffer.line", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 9 }, { "content": " def write(self, msg, overwrite):\n last_line = len(self._buffer)\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n\n if len(to_write) == 1 and to_write[0] == \"\":\n return (last_line, last_line)\n\n if overwrite or self.is_empty():\n self._buffer[:] = to_write\n else:\n self._buffer.append(to_write)\n\n return (last_line, last_line + len(to_write))", "metadata": "root.VimBuffer.write", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 12 }, { "content": " def overwrite(self, msg, lineno, allowEmpty):\n \"\"\" insert into current position in buffer\"\"\"\n if not msg and allowEmpty == False:\n return\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n\n lstart = lineno - 1\n lend = lstart + len(to_write)\n self._buffer[lstart:lend] = to_write\n\n return (lstart, lend)", "metadata": "root.VimBuffer.overwrite", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 30 }, { "content": " def delete(self, start_line, end_line = None):\n try:\n if not end_line:\n end_line = start_line + 1\n self._buffer[end_line]\n remaining_buffer = self._buffer[end_line:]\n del self._buffer[start_line:]\n self._buffer.append(remaining_buffer)\n except IndexError:\n del self._buffer[start_line:]", "metadata": "root.VimBuffer.delete", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 46 }, { "content": " def contents(self):\n return self._buffer[:]", "metadata": "root.VimBuffer.contents", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 57 }, { "content": " def clean(self):\n self._buffer[:] = []", "metadata": "root.VimBuffer.clean", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 60 }, { "content": " def is_empty(self):\n if len(self._buffer) == 1 and len(self._buffer[0]) == 0:\n return True\n else:\n return False", "metadata": "root.VimBuffer.is_empty", "header": "['class', 'VimBuffer', ':', '___EOS___']", "index": 63 }, { "content": "class HiddenBuffer:\n\n\n\n\n\n\n\n", "metadata": "root.HiddenBuffer", "header": "['module', '___EOS___']", "index": 69 }, { "content": " def __init__(self, buffer = []):\n self._buffer = buffer[:]", "metadata": "root.HiddenBuffer.__init__", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 70 }, { "content": " def line(self, number):\n return self._buffer[number]", "metadata": "root.HiddenBuffer.line", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 73 }, { "content": " def replace(self, contents):\n self._buffer[:] = contents[:]", "metadata": "root.HiddenBuffer.replace", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 76 }, { "content": " def write(self, msg, overwrite):\n last_line = len(self._buffer)\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n\n if len(to_write) == 1 and to_write[0] == \"\":\n return (last_line, last_line)\n\n to_write = str(msg).split('\\n')\n\n if overwrite or self.is_empty():\n self._buffer[:] = to_write\n else:\n self._buffer.extend(to_write)\n\n return (last_line, last_line + len(to_write))", "metadata": "root.HiddenBuffer.write", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 79 }, { "content": " def overwrite(self, msg, lineno, allowEmpty):\n \"\"\" insert into current position in buffer\"\"\"\n if not msg and allowEmpty == False:\n return\n\n if isinstance(msg, list):\n to_write = msg\n else:\n to_write = str(msg).split('\\n')\n last_line = len(self._buffer)\n\n lstart = lineno - 1\n lend = lstart + len(to_write)\n self._buffer[lstart:lend] = to_write\n\n return (lstart, lend)", "metadata": "root.HiddenBuffer.overwrite", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 99 }, { "content": " def delete(self, start_line, end_line = None):\n try:\n if not end_line:\n end_line = start_line + 1\n self._buffer[start_line:end_line] = []\n except IndexError:\n del self._buffer[start_line:]", "metadata": "root.HiddenBuffer.delete", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 116 }, { "content": " def clean(self):\n self._buffer[:] = []", "metadata": "root.HiddenBuffer.clean", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 124 }, { "content": " def contents(self):\n return self._buffer[:]", "metadata": "root.HiddenBuffer.contents", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 127 }, { "content": " def is_empty(self):\n return not self._buffer", "metadata": "root.HiddenBuffer.is_empty", "header": "['class', 'HiddenBuffer', ':', '___EOS___']", "index": 130 } ]

[ { "span": "import vim", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 10 } ]

[]

1

false

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Except block handles 'BaseException'

kergoth/git-origin/git-python/lib/git/tree.py

[ { "content": " @staticmethod\n def content_from_string(repo, text):\n \"\"\"\n Parse a content item and create the appropriate object\n\n ``repo``\n is the Repo\n\n ``text``\n is the single line containing the items data in `git ls-tree` format\n\n Returns\n ``git.Blob`` or ``git.Tree``\n \"\"\"\n try:\n mode, typ, id, name = text.expandtabs(1).split(\" \", 3)\n except:\n return None\n\n if typ == \"tree\":\n return Tree(repo, id=id, mode=mode, name=name)\n elif typ == \"blob\":\n return blob.Blob(repo, id=id, mode=mode, name=name)\n elif typ == \"commit\":\n return None\n else:\n raise(TypeError, \"Invalid type: %s\" % typ)", "metadata": "root.Tree.content_from_string", "header": "['class', 'Tree', '(', 'LazyMixin', ')', ':', '___EOS___']", "index": 32 } ]

[ { "span": "except:", "start_line": 48, "start_column": 8, "end_line": 48, "end_column": 15 } ]

[]

1

true

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Testing equality to None

kdart/pycopia/core/pycopia/fsm.py

[ { "content": " def set_default_transition(self, action, next_state):\n '''This sets the default transition.\n If the FSM cannot match the pair (input_symbol, current_state)\n in the transition table then this is the transition that\n will be returned. This is useful for catching errors and undefined states.\n The default transition can be removed by calling\n `add_default_transition (None, None)`.\n If the default is not set and the FSM cannot match\n the input_symbol and current_state then it will\n raise an exception (see process()).\n '''\n if action == None and next_state == None:\n self.default_transition = None\n else:\n self.default_transition = (action, next_state)", "metadata": "root.FSM.set_default_transition", "header": "['class', 'FSM', '(', 'object', ')', ':', '___EOS___']", "index": 92 } ]

[ { "span": "action == None ", "start_line": 103, "start_column": 11, "end_line": 103, "end_column": 25 }, { "span": "next_state == None:", "start_line": 103, "start_column": 30, "end_line": 103, "end_column": 48 } ]

[]

1

true

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Unused import

godaddy/Thespian/thespian/test/testActors.py

[ { "content": "\"\"\"This test creates two top level actors and one sub-actor and\n verifies that the actors can exchange sequences of messages.\"\"\"\n\nimport unittest\nimport time\nimport thespian.test.helpers\nfrom thespian.actors import *\nfrom thespian.test import ActorSystemTestCase\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class rosaline(Actor):\n name = 'Rosaline'", "metadata": "root.rosaline", "header": "['module', '___EOS___']", "index": 9 }, { "content": "class Romeo(Actor):", "metadata": "root.Romeo", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def receiveMessage(self, msg, sender):\n if isinstance(msg, JulietAppears):\n self.send(msg.juliet, \"But, soft! what light through yonder window breaks?\")\n elif isinstance(msg, ActorExitRequest):\n pass # nothing special, just die\n elif msg == 'Ay me!':\n self.send(sender, 'She speaks!')\n elif msg == 'O Romeo, Romeo! wherefore art thou Romeo?':\n self.send(sender, 'Shall I hear more, or shall I speak at this?')\n elif 'rose' in msg:\n pass # wait for it\n elif 'sweet' in msg:\n self.send(sender, 'Like softest music to attending ears!')\n elif 'hello' in msg:\n print('Hello from %s'%(str(self)))\n elif 'who_are_you' == msg:\n self.send(sender, self.myAddress)\n # otherwise sit and swoon", "metadata": "root.Romeo.receiveMessage", "header": "['class', 'Romeo', '(', 'Actor', ')', ':', '___EOS___']", "index": 13 }, { "content": "class Capulet(Actor):", "metadata": "root.Capulet", "header": "['module', '___EOS___']", "index": 33 }, { "content": " def receiveMessage(self, msg, sender):\n if msg == \"has a daughter?\":\n self.send(sender, self.createActor(Juliet))", "metadata": "root.Capulet.receiveMessage", "header": "['class', 'Capulet', '(', 'Actor', ')', ':', '___EOS___']", "index": 34 }, { "content": "class Juliet(Actor):", "metadata": "root.Juliet", "header": "['module', '___EOS___']", "index": 39 }, { "content": " def __init__(self, *args, **kw):\n self.nurse = None\n self.recalled = False\n super(Juliet, self).__init__(*args, **kw)", "metadata": "root.Juliet.__init__", "header": "['class', 'Juliet', '(', 'Actor', ')', ':', '___EOS___']", "index": 40 }, { "content": " def receiveMessage(self, msg, sender):\n if isinstance(msg, ActorExitRequest):\n pass # nothing special, just die\n elif \"what light\" in msg:\n self.send(sender, 'Ay me!')\n elif msg == 'She speaks!':\n self.send(sender, 'O Romeo, Romeo! wherefore art thou Romeo?')\n elif msg == 'Shall I hear more, or shall I speak at this?':\n self.send(sender, \"What's in a name? That which we call a rose\")\n self.send(sender, \"By any other name would smell as sweet\")\n elif msg == 'Like softest music to attending ears!':\n if self.nurse:\n self.send(self.nurse, 'Anon, good nurse!')\n else:\n self.recalled = True\n elif msg == 'Mistress!':\n self.nurse = sender\n if self.recalled:\n self.send(self.nurse, 'Anon, good nurse!')\n elif 'who_are_you' == msg:\n self.send(sender, self.myAddress)", "metadata": "root.Juliet.receiveMessage", "header": "['class', 'Juliet', '(', 'Actor', ')', ':', '___EOS___']", "index": 44 }, { "content": "class Nurse(Actor):", "metadata": "root.Nurse", "header": "['module', '___EOS___']", "index": 67 }, { "content": " def __init__(self, *args, **kw):\n self.heardItAll = False\n super(Nurse, self).__init__(*args, **kw)", "metadata": "root.Nurse.__init__", "header": "['class', 'Nurse', '(', 'Actor', ')', ':', '___EOS___']", "index": 68 }, { "content": " def receiveMessage(self, msg, sender):\n if type(msg) == type((1,2)) and msg[0] == 'begin':\n self.send(msg[1], JulietAppears(msg[2]))\n self.send(msg[2], 'Mistress!')\n elif msg == 'Anon, good nurse!':\n self.heardItAll = True\n elif msg == 'done?':\n self.send(sender, 'Fini' if self.heardItAll else 'not yet')", "metadata": "root.Nurse.receiveMessage", "header": "['class', 'Nurse', '(', 'Actor', ')', ':', '___EOS___']", "index": 71 }, { "content": "class JulietAppears:\n stage = 'Right'", "metadata": "root.JulietAppears", "header": "['module', '___EOS___']", "index": 81 }, { "content": " def __init__(self, julietAddr):\n self.juliet = julietAddr", "metadata": "root.JulietAppears.__init__", "header": "['class', 'JulietAppears', ':', '___EOS___']", "index": 83 }, { "content": "class TestASimpleSystem(ActorSystemTestCase):\n testbase='Simple'\n scope='func'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.TestASimpleSystem", "header": "['module', '___EOS___']", "index": 87 }, { "content": " def test01_ActorSystemStartupShutdown(self):\n rosalineA = ActorSystem().createActor(rosaline)\n # just finish, make sure no exception is thrown.", "metadata": "root.TestASimpleSystem.test01_ActorSystemStartupShutdown", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 91 }, { "content": " def test01_1_ActorSystemMultipleShutdown(self):\n rosalineA = ActorSystem().createActor(rosaline)\n ActorSystem().shutdown()\n ActorSystem().shutdown()", "metadata": "root.TestASimpleSystem.test01_1_ActorSystemMultipleShutdown", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 95 }, { "content": " def test02_PrimaryActorCreation(self):\n romeo = ActorSystem().createActor(Romeo)\n juliet = ActorSystem().createActor(Juliet)\n self.assertNotEqual(romeo, juliet)", "metadata": "root.TestASimpleSystem.test02_PrimaryActorCreation", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 100 }, { "content": " def test03_CreateActorUniqueAddress(self):\n romeo = ActorSystem().createActor(Romeo)\n juliet = ActorSystem().createActor(Juliet)\n self.assertNotEqual(romeo, juliet)\n romeo2 = ActorSystem().createActor(Romeo)\n self.assertNotEqual(romeo, romeo2)", "metadata": "root.TestASimpleSystem.test03_CreateActorUniqueAddress", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 105 }, { "content": " def NOtest04_PossibleActorSystemResourceExhaustion(self):\n asys = ActorSystem()\n try:\n addresses = [asys.createActor(Juliet) for n in range(10000)]\n except OSError as err:\n import errno\n if err.errno == errno.EGAIN:\n pass\n else:\n raise", "metadata": "root.TestASimpleSystem.NOtest04_PossibleActorSystemResourceExhaustion", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 112 }, { "content": " def test05_ManyActorsUniqueAddress(self):\n asys = ActorSystem()\n addresses = [asys.createActor(Juliet) for n in range(100)]\n uniqueAddresses = set(addresses)\n if len(addresses) != len(uniqueAddresses):\n duplicates = [A for A in uniqueAddresses if len([X for X in addresses if X == A]) > 1]\n print('Duplicates: %s'%map(str, duplicates))\n if duplicates:\n for each in duplicates:\n print('... %s at: %s'%(str(each), str([N for N,A in enumerate(addresses) if A == each])))\n print('Note: if this is a UDPTransport test, be advised that Linux occasionally does seem to assign the same UDP port multiple times. Linux bug?')\n self.assertEqual(len(addresses), len(uniqueAddresses))", "metadata": "root.TestASimpleSystem.test05_ManyActorsUniqueAddress", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 124 }, { "content": " def test06_ManyActorsValidAddresses(self):\n import string\n addresses = [ActorSystem().createActor(Juliet) for n in range(100)]\n for addr in addresses:\n invchar = ''.join([c for c in str(addr)\n if c not in string.ascii_letters + string.digits + \"-~/():., '|\"])\n self.assertEqual(str(addr), str(addr) + invchar) # invchar should be blank", "metadata": "root.TestASimpleSystem.test06_ManyActorsValidAddresses", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 137 }, { "content": " def test07_SingleNonListeningActorTell(self):\n rosalineA = ActorSystem().createActor(rosaline)\n # rosaline does not override the receiveMessage method, so the\n # Actor default method will throw an exception. This will\n # Kill the rosaline Actor. It's a top level Actor, so it will\n # not be restarted. This will cause the 'hello' message to be\n # delivered to the DeadLetterBox. Verify that no exception\n # makes its way out of the ActorSystem here.\n ActorSystem().tell(rosalineA, 'hello')\n self.assertTrue(True)", "metadata": "root.TestASimpleSystem.test07_SingleNonListeningActorTell", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 145 }, { "content": " def test08_SingleActorTell(self):\n romeoA = ActorSystem().createActor(Romeo)\n ActorSystem().tell(romeoA, 'hello')\n # Nothing much happens, Romeo is smitten and has no time for trivialities, but\n # he will try to generate str() of himself.", "metadata": "root.TestASimpleSystem.test08_SingleActorTell", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 156 }, { "content": " def test09_SingleActorAsk(self):\n romeoA = ActorSystem().createActor(Romeo)\n resp = ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?')\n self.assertEqual(resp, 'Shall I hear more, or shall I speak at this?')", "metadata": "root.TestASimpleSystem.test09_SingleActorAsk", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 162 }, { "content": " def test10_ActorAskWithNoResponse(self):\n romeoA = ActorSystem().createActor(Romeo)\n # This test is possibly unique to the simpleSystemBase, which\n # will run an process all messages on an ask (or tell) call.\n # Properly there is no way to determine if an answer is\n # forthcoming from an asynchronous system, so all this can do\n # is assert that there is no response within a particular time\n # period. At this point, timing is not supported, so this\n # test is underspecified and assumptive.\n resp = ActorSystem().ask(romeoA, \"What's in a name? That which we call a rose\", 1.5)\n self.assertEqual(resp, None)\n # Now verify that the Actor and system are still alive and operating normally.\n resp = ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?')\n self.assertEqual(resp, 'Shall I hear more, or shall I speak at this?')", "metadata": "root.TestASimpleSystem.test10_ActorAskWithNoResponse", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 167 }, { "content": " def test11_SingleActorAskMultipleTimes(self):\n romeoA = ActorSystem().createActor(Romeo)\n self.assertEqual(ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n self.assertEqual(ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n self.assertEqual(ActorSystem().ask(romeoA, 'Ay me!'), 'She speaks!')\n self.assertEqual(ActorSystem().ask(romeoA, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')", "metadata": "root.TestASimpleSystem.test11_SingleActorAskMultipleTimes", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 182 }, { "content": " def test12_MultipleActorsAskMultipleTimes(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n self.assertEqual(play.ask(romeo, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n juliet = play.createActor(Juliet)\n self.assertEqual(play.ask(romeo, 'O Romeo, Romeo! wherefore art thou Romeo?'),\n 'Shall I hear more, or shall I speak at this?')\n self.assertEqual(play.ask(romeo, 'Ay me!'), 'She speaks!')\n self.assertEqual(play.ask(juliet, 'She speaks!'),\n 'O Romeo, Romeo! wherefore art thou Romeo?')\n self.assertEqual(play.ask(romeo, 'Ay me!'), 'She speaks!')\n self.assertEqual(play.ask(juliet, \"Do you know what light that is?\"), 'Ay me!')", "metadata": "root.TestASimpleSystem.test12_MultipleActorsAskMultipleTimes", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 192 }, { "content": " def test13_SubActorCreation(self):\n capulet = ActorSystem().createActor(Capulet)\n juliet = ActorSystem().ask(capulet, 'has a daughter?', 2.5)\n print ('Juliet is: %s'%str(juliet))\n self.assertIsNot(juliet, None)\n if juliet:\n self.assertEqual(ActorSystem().ask(juliet, 'what light?'), 'Ay me!', 0.75)\n juliet2 = ActorSystem().ask(capulet, 'has a daughter?')\n self.assertIsNot(juliet2, None)\n if juliet2:\n self.assertEqual(ActorSystem().ask(juliet2, 'what light?'), 'Ay me!', 0.5)\n self.assertEqual(ActorSystem().ask(juliet, 'what light?'), 'Ay me!', 0.5)", "metadata": "root.TestASimpleSystem.test13_SubActorCreation", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 206 }, { "content": " def test14_EntireActWithActorStart(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n juliet = play.createActor(Juliet)\n nurse = play.createActor(Nurse)\n self.assertEqual(play.ask(nurse, 'done?'), 'not yet')\n play.tell(nurse, ('begin', romeo, juliet))\n\n for X in range(50):\n if play.ask(nurse, 'done?') == 'Fini':\n break\n time.sleep(0.01) # Allow some time for the entire act\n self.assertEqual(play.ask(nurse, 'done?'), 'Fini')", "metadata": "root.TestASimpleSystem.test14_EntireActWithActorStart", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 219 }, { "content": " def test15_IncompleteActMissingActor(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n juliet = play.createActor(Juliet)\n # no nurse actor created\n play.tell(romeo, JulietAppears(juliet))\n # No error should occur here when Juliet reaches the end and\n # doesn't have a nurse to tell.\n\n time.sleep(0.5) # Allow some time for the entire act\n\n # Now create the nurse and tell her to talk to romeo and\n # juliet, which should cause completion\n nurse = play.createActor(Nurse)\n self.assertEqual(play.ask(nurse, 'done?'), 'not yet')\n play.tell(nurse, ('begin', romeo, juliet))\n\n for X in range(50):\n if play.ask(nurse, 'done?') == 'Fini':\n break\n time.sleep(0.01) # Allow some time for the entire act\n self.assertEqual(play.ask(nurse, 'done?'), 'Fini')", "metadata": "root.TestASimpleSystem.test15_IncompleteActMissingActor", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 233 }, { "content": " def test16_ActorProperties(self):\n play = ActorSystem()\n romeo = play.createActor(Romeo)\n juliet = play.createActor(Juliet)\n\n self.assertIsNotNone(play.ask(romeo, 'who_are_you', 0.25))\n self.assertIsNotNone(play.ask(juliet, 'who_are_you', 0.25))\n self.assertNotEqual(play.ask(romeo, 'who_are_you', 0.25),\n play.ask(juliet, 'who_are_you', 0.25))", "metadata": "root.TestASimpleSystem.test16_ActorProperties", "header": "['class', 'TestASimpleSystem', '(', 'ActorSystemTestCase', ')', ':', '___EOS___']", "index": 256 }, { "content": "class TestMultiprocUDPSystem(TestASimpleSystem):\n testbase='MultiprocUDP'", "metadata": "root.TestMultiprocUDPSystem", "header": "['module', '___EOS___']", "index": 267 }, { "content": " def setUp(self):\n self.setSystemBase('multiprocUDPBase')\n super(TestMultiprocUDPSystem, self).setUp()", "metadata": "root.TestMultiprocUDPSystem.setUp", "header": "['class', 'TestMultiprocUDPSystem', '(', 'TestASimpleSystem', ')', ':', '___EOS___']", "index": 269 }, { "content": "class TestMultiprocTCPSystem(TestASimpleSystem):\n testbase='MultiprocTCP'", "metadata": "root.TestMultiprocTCPSystem", "header": "['module', '___EOS___']", "index": 273 }, { "content": " def setUp(self):\n self.setSystemBase('multiprocTCPBase')\n super(TestMultiprocTCPSystem, self).setUp()", "metadata": "root.TestMultiprocTCPSystem.setUp", "header": "['class', 'TestMultiprocTCPSystem', '(', 'TestASimpleSystem', ')', ':', '___EOS___']", "index": 275 }, { "content": "class TestMultiprocQueueSystem(TestASimpleSystem):\n testbase='MultiprocQueue'", "metadata": "root.TestMultiprocQueueSystem", "header": "['module', '___EOS___']", "index": 279 }, { "content": " def setUp(self):\n self.setSystemBase('multiprocQueueBase')\n super(TestMultiprocQueueSystem, self).setUp()", "metadata": "root.TestMultiprocQueueSystem.setUp", "header": "['class', 'TestMultiprocQueueSystem', '(', 'TestASimpleSystem', ')', ':', '___EOS___']", "index": 281 } ]

[ { "span": "import unittest", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 15 }, { "span": "import thespian.test.helpers", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 28 } ]

[]

1

false

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Unused import

h0ke/pynt/pynt/pynt.py

[ { "content": "\"\"\"\n Pynt is a Python client that wraps the Open Beer Database API.\n\n Questions, comments? [email protected]\n\"\"\"\n\n__author__ = \"Matthew Hokanson <[email protected]>\"\n__version__ = \"0.2.0\"\n\n\nfrom beer import Beer\nfrom brewery import Brewery\nfrom request import Request\nfrom settings import Settings\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from beer import Beer", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 21 }, { "span": "from brewery import Brewery", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 27 }, { "span": "from request import Request", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 27 }, { "span": "from settings import Settings", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 29 } ]

[]

1

false

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Unused import

dimagi/commcare-hq/corehq/apps/app_manager/fields.py

[ { "content": "import logging\nfrom django.conf import settings\nfrom django.core.urlresolvers import reverse\nfrom django.http import Http404\nimport collections\nimport itertools\nfrom django import forms\nfrom django.utils.translation import ugettext as _\nfrom corehq.apps.app_manager.analytics import get_exports_by_application\nfrom corehq.apps.app_manager.dbaccessors import get_apps_in_domain, get_app\nfrom corehq.apps.app_manager.models import Application\nfrom corehq.form_processor.interfaces.dbaccessors import CaseAccessors\nfrom couchforms.analytics import get_exports_by_form\nfrom couchforms.models import XFormInstance\nfrom dimagi.utils.decorators.memoized import memoized\n\n\nApplicationDataSource = collections.namedtuple('ApplicationDataSource', ['application', 'source_type', 'source'])\nRMIDataChoice = collections.namedtuple('RMIDataChoice', ['id', 'text', 'data'])\nAppFormRMIResponse = collections.namedtuple('AppFormRMIResponse', [\n 'app_types', 'apps_by_type', 'modules_by_app',\n 'forms_by_app_by_module', 'placeholders'\n])\nAppFormRMIPlaceholder = collections.namedtuple('AppFormRMIPlaceholder', [\n 'application', 'module', 'form'\n])\nAppCaseRMIResponse = collections.namedtuple('AppCaseRMIResponse', [\n 'app_types', 'apps_by_type', 'case_types_by_app', 'placeholders'\n])\nAppCaseRMIPlaceholder = collections.namedtuple('AppCaseRMIPlaceholder', [\n 'application', 'case_type'\n])\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ApplicationDataSourceUIHelper(object):\n \"\"\"\n A helper object that can be used in forms that allows you to select a data source from an application.\n Data sources can be forms and cases.\n\n To use it you must do the following:\n\n - Add this helper as a member variable of your form\n - Call helper.boostrap() with the domain.\n - Add helper.get_fields() to the form fields.\n - Add the following knockout bindings to your template:\n\n $(function () {\n $(\"#FORM\").koApplyBindings({\n application: ko.observable(\"\"),\n sourceType: ko.observable(\"\"),\n sourcesMap: {{ sources_map|JSON }}\n });\n });\n\n Where FORM is a selector for your form and sources_map is the .all_sources property from this object\n (which gets set after bootstrap).\n\n See usages for examples.\n \"\"\"\n\n\n\n", "metadata": "root.ApplicationDataSourceUIHelper", "header": "['module', '___EOS___']", "index": 34 }, { "content": " def __init__(self, enable_cases=True, enable_forms=True):\n self.all_sources = {}\n self.enable_cases = enable_cases\n self.enable_forms = enable_forms\n source_choices = []\n if enable_cases:\n source_choices.append((\"case\", _(\"Case\")))\n if enable_forms:\n source_choices.append((\"form\", _(\"Form\")))\n\n self.application_field = forms.ChoiceField(label=_('Application'), widget=forms.Select())\n if enable_cases and enable_forms:\n self.source_type_field = forms.ChoiceField(label=_('Type of Data'),\n choices=source_choices,\n widget=forms.Select(choices=source_choices))\n else:\n self.source_type_field = forms.ChoiceField(choices=source_choices,\n widget=forms.HiddenInput(),\n initial=source_choices[0][0])\n\n self.source_field = forms.ChoiceField(label=_('Data Source'), widget=forms.Select())", "metadata": "root.ApplicationDataSourceUIHelper.__init__", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 60 }, { "content": " def bootstrap(self, domain):\n self.all_sources = get_app_sources(domain)\n self.application_field.choices = sorted(\n [(app_id, source['name']) for app_id, source in self.all_sources.items()],\n key=lambda id_name_tuple: (id_name_tuple[1] or '').lower()\n )\n self.source_field.choices = []\n\n def _add_choices(field, choices):\n field.choices.extend(choices)\n # it's weird/annoying that you have to manually sync these\n field.widget.choices.extend(choices)\n\n if self.enable_cases:\n _add_choices(\n self.source_field,\n [(ct['value'], ct['text']) for app in self.all_sources.values() for ct in app['case']]\n )\n if self.enable_forms:\n _add_choices(\n self.source_field,\n [(ct['value'], ct['text']) for app in self.all_sources.values() for ct in app['form']]\n )\n\n # NOTE: This corresponds to a view-model that must be initialized in your template.\n # See the doc string of this class for more information.\n self.application_field.widget.attrs = {'data-bind': 'value: application'}\n self.source_type_field.widget.attrs = {'data-bind': 'value: sourceType'}\n self.source_field.widget.attrs = {'data-bind': '''\n options: sourcesMap[application()][sourceType()],\n optionsText: function(item){return item.text},\n optionsValue: function(item){return item.value}\n '''}", "metadata": "root.ApplicationDataSourceUIHelper.bootstrap", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 82 }, { "content": " def get_fields(self):\n fields = collections.OrderedDict()\n fields['source_type'] = self.source_type_field\n fields['application'] = self.application_field\n fields['source'] = self.source_field\n return fields", "metadata": "root.ApplicationDataSourceUIHelper.get_fields", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 116 }, { "content": " def get_app_source(self, data_dict):\n return ApplicationDataSource(data_dict['application'], data_dict['source_type'], data_dict['source'])", "metadata": "root.ApplicationDataSourceUIHelper.get_app_source", "header": "['class', 'ApplicationDataSourceUIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 123 }, { "content": "def get_app_sources(domain):\n apps = get_apps_in_domain(domain, include_remote=False)\n return {\n app._id: {\n \"name\": app.name,\n \"case\": [{\"text\": t, \"value\": t} for t in app.get_case_types()],\n \"form\": [\n {\n \"text\": u'{} / {}'.format(form.get_module().default_name(), form.default_name()),\n \"value\": form.get_unique_id()\n } for form in app.get_forms()\n ]\n }\n for app in apps\n }", "metadata": "root.get_app_sources", "header": "['module', '___EOS___']", "index": 127 }, { "content": "class ApplicationDataRMIHelper(object):\n \"\"\"ApplicationDataRMIHelper is meant to generate the response for the\n djangoRMI methods required to initialize form controlled by\n hq.app_data_drilldown.ng.js.\n\n Note / todo: This Helper should be merged with ApplicationDataSourceUIHelper.\n Holding off to a different PR, as I want to isolate QA to just the exports\n (the first thing to use this) --Biyeun\n\n \"\"\"\n UNKNOWN_SOURCE = '_unknown'\n\n APP_TYPE_ALL = 'all'\n APP_TYPE_DELETED = 'deleted'\n APP_TYPE_REMOTE = 'remote'\n APP_TYPE_NONE = 'no_app'\n APP_TYPE_UNKNOWN = 'unknown'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.ApplicationDataRMIHelper", "header": "['module', '___EOS___']", "index": 144 }, { "content": " def __init__(self, domain, as_dict=True, form_placeholders=None, case_placeholders=None):\n self.domain = domain\n self.as_dict = as_dict\n default_form_placeholder = AppFormRMIPlaceholder(\n application=_(\"Select Application\"),\n module=_(\"Select Module\"),\n form=_(\"Select Form\"),\n )\n self.form_placeholders = form_placeholders or default_form_placeholder\n default_case_placeholder = AppCaseRMIPlaceholder(\n application=_(\"Select Application\"),\n case_type=_(\"Select Case Type\"),\n )\n self.case_placeholders = case_placeholders or default_case_placeholder\n if self.as_dict:\n self.form_placeholders = self.form_placeholders._asdict()\n self.case_placeholders = self.case_placeholders._asdict()", "metadata": "root.ApplicationDataRMIHelper.__init__", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 162 }, { "content": " def _get_unknown_form_possibilities(self):\n possibilities = collections.defaultdict(list)\n for app in get_exports_by_application(self.domain):\n # index by xmlns\n x = app['value']\n x['has_app'] = True\n possibilities[app['key'][2]].append(x)\n return possibilities", "metadata": "root.ApplicationDataRMIHelper._get_unknown_form_possibilities", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 180 }, { "content": " def _attach_unknown_suggestions(self, unknown_forms):\n \"\"\"If there are any unknown forms, try and find the best possible matches\n from deleted apps or copied apps. If no suggestion is found, say so\n but provide the xmlns.\n \"\"\"\n if unknown_forms:\n possibilities = self._get_unknown_form_possibilities()\n\n class AppCache(dict):\n def __init__(self, domain):\n super(AppCache, self).__init__()\n self.domain = domain\n\n def __getitem__(self, item):\n if item not in self:\n try:\n self[item] = get_app(app_id=item, domain=self.domain)\n except Http404:\n pass\n return super(AppCache, self).__getitem__(item)\n\n app_cache = AppCache(self.domain)\n\n for form in unknown_forms:\n app = None\n if form['app']['id']:\n try:\n app = app_cache[form['app']['id']]\n form['has_app'] = True\n except KeyError:\n form['app_does_not_exist'] = True\n form['possibilities'] = possibilities[form['xmlns']]\n if form['possibilities']:\n form['duplicate'] = True\n else:\n if app.domain != self.domain:\n logging.error(\"submission tagged with app from wrong domain: %s\" % app.get_id)\n else:\n if app.copy_of:\n try:\n app = app_cache[app.copy_of]\n form['app_copy'] = {'id': app.get_id, 'name': app.name}\n except KeyError:\n form['app_copy'] = {'id': app.copy_of, 'name': '?'}\n if app.is_deleted():\n form['app_deleted'] = {'id': app.get_id}\n try:\n app_forms = app.get_xmlns_map()[form['xmlns']]\n except AttributeError:\n # it's a remote app\n app_forms = None\n form['has_app'] = True\n if app_forms:\n app_form = app_forms[0]\n if app_form.doc_type == 'UserRegistrationForm':\n form['is_user_registration'] = True\n else:\n app_module = app_form.get_module()\n form['module'] = app_module\n form['form'] = app_form\n form['show_xmlns'] = False\n\n if not form.get('app_copy') and not form.get('app_deleted'):\n form['no_suggestions'] = True\n if app:\n form['app'] = {'id': app.get_id, 'name': app.name, 'langs': app.langs}\n else:\n form['possibilities'] = possibilities[form['xmlns']]\n if form['possibilities']:\n form['duplicate'] = True\n else:\n form['no_suggestions'] = True\n return unknown_forms", "metadata": "root.ApplicationDataRMIHelper._attach_unknown_suggestions", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 189 }, { "content": " @staticmethod\n def _sorkey_form(form):\n app_id = form['app']['id']\n if form.get('has_app', False):\n order = 0 if not form.get('app_deleted') else 1\n app_name = form['app']['name']\n module = form.get('module')\n if module:\n # module is sometimes wrapped json, sometimes a dict!\n module_id = module['id'] if 'id' in module else module.id\n else:\n module_id = -1 if form.get('is_user_registration') else 1000\n app_form = form.get('form')\n if app_form:\n # app_form is sometimes wrapped json, sometimes a dict!\n form_id = app_form['id'] if 'id' in app_form else app_form.id\n else:\n form_id = -1\n return (order, app_name, app_id, module_id, form_id)\n else:\n form_xmlns = form['xmlns']\n return (2, form_xmlns, app_id)", "metadata": "root.ApplicationDataRMIHelper._sorkey_form", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 263 }, { "content": " @property\n @memoized\n def _all_forms(self):\n forms = []\n unknown_forms = []\n for f in get_exports_by_form(self.domain):\n form = f['value']\n if form.get('app_deleted') and not form.get('submissions'):\n continue\n if 'app' in form:\n form['has_app'] = True\n forms.append(form)\n else:\n app_id = f['key'][1] or ''\n form['app'] = {\n 'id': app_id\n }\n form['has_app'] = False\n form['show_xmlns'] = True\n unknown_forms.append(form)\n forms.extend(self._attach_unknown_suggestions(unknown_forms))\n return sorted(forms, key=self._sorkey_form)", "metadata": "root.ApplicationDataRMIHelper._all_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 286 }, { "content": " @property\n @memoized\n def _no_app_forms(self):\n return filter(lambda f: not f.get('has_app', False), self._all_forms)", "metadata": "root.ApplicationDataRMIHelper._no_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 309 }, { "content": " @property\n @memoized\n def _remote_app_forms(self):\n return filter(lambda f: f.get('has_app', False) and f.get('show_xmlns', False), self._all_forms)", "metadata": "root.ApplicationDataRMIHelper._remote_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 314 }, { "content": " @property\n @memoized\n def _deleted_app_forms(self):\n return filter(\n lambda f: f.get('has_app', False) and f.get('app_deleted') and not f.get('show_xmlns', False),\n self._all_forms\n )", "metadata": "root.ApplicationDataRMIHelper._deleted_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 319 }, { "content": " @property\n @memoized\n def _available_app_forms(self):\n return filter(\n lambda f: f.get('has_app', False) and not f.get('app_deleted') and not f.get('show_xmlns', False),\n self._all_forms\n )", "metadata": "root.ApplicationDataRMIHelper._available_app_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 327 }, { "content": " @property\n @memoized\n def _unknown_forms(self):\n return itertools.chain(self._deleted_app_forms, self._remote_app_forms, self._no_app_forms)", "metadata": "root.ApplicationDataRMIHelper._unknown_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 335 }, { "content": " def _get_app_type_choices(self, as_dict=True):\n choices = [(_(\"Applications\"), self.APP_TYPE_ALL)]\n if self._remote_app_forms or self._deleted_app_forms:\n choices.append((_(\"Unknown\"), self.APP_TYPE_UNKNOWN))\n choices = map(lambda c: RMIDataChoice(id=c[1], text=c[0], data={}), choices)\n if as_dict:\n choices = map(lambda c: c._asdict(), choices)\n return choices", "metadata": "root.ApplicationDataRMIHelper._get_app_type_choices", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 340 }, { "content": " @staticmethod\n def _get_unique_choices(choices):\n final_choices = collections.defaultdict(list)\n for k, val_list in choices.items():\n new_val_ids = []\n final_choices[k] = []\n for v in val_list:\n if v.id not in new_val_ids:\n new_val_ids.append(v.id)\n final_choices[k].append(v)\n return final_choices", "metadata": "root.ApplicationDataRMIHelper._get_unique_choices", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 349 }, { "content": " def _get_applications_by_type(self, as_dict=True):\n apps_by_type = (\n (self.APP_TYPE_ALL, self._available_app_forms),\n (self.APP_TYPE_UNKNOWN, self._unknown_forms)\n )\n _app_fmt = lambda c: (c[0], map(lambda f: RMIDataChoice(\n f['app']['id'] if f.get('has_app', False) else self.UNKNOWN_SOURCE,\n f['app']['name'] if f.get('has_app', False) else _(\"Unknown Application\"),\n f\n ), c[1]))\n apps_by_type = map(_app_fmt, apps_by_type)\n apps_by_type = dict(apps_by_type)\n apps_by_type = self._get_unique_choices(apps_by_type)\n\n # include restore URL for deleted apps\n for app in apps_by_type[self.APP_TYPE_DELETED]:\n app.data['restoreUrl'] = reverse('view_app', args=[self.domain, app.id])\n\n if as_dict:\n apps_by_type = self._map_chosen_by_choice_as_dict(apps_by_type)\n return apps_by_type", "metadata": "root.ApplicationDataRMIHelper._get_applications_by_type", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 361 }, { "content": " @staticmethod\n def _map_chosen_by_choice_as_dict(chosen_by_choice):\n for k, v in chosen_by_choice.items():\n chosen_by_choice[k] = map(lambda f: f._asdict(), v)\n return chosen_by_choice", "metadata": "root.ApplicationDataRMIHelper._map_chosen_by_choice_as_dict", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 383 }, { "content": " @staticmethod\n def _get_item_name(item, has_app, app_lang, default_name):\n item_name = None\n if has_app and item is not None:\n item_name = item['name'].get(app_lang) or item['name'].get('en')\n return item_name or default_name", "metadata": "root.ApplicationDataRMIHelper._get_item_name", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 389 }, { "content": " def _get_modules_and_forms(self, as_dict=True):\n modules_by_app = collections.defaultdict(list)\n forms_by_app_by_module = {}\n for form in self._all_forms:\n has_app = form.get('has_app', False)\n app_lang = form['app']['langs'][0] if 'langs' in form['app'] else 'en'\n app_id = form['app']['id'] if has_app else self.UNKNOWN_SOURCE\n module = form.get('module')\n module_id = (module['id'] if has_app and module is not None\n else self.UNKNOWN_SOURCE)\n module_name = self._get_item_name(\n module, has_app, app_lang, _(\"Unknown Module\")\n )\n form_xmlns = form['xmlns']\n form_name = form_xmlns\n if not form.get('show_xmlns', False):\n form_name = self._get_item_name(\n form.get('form'), has_app, app_lang,\n \"{} (potential matches)\".format(form_xmlns)\n )\n module_choice = RMIDataChoice(\n module_id,\n module_name,\n form\n )\n form_choice = RMIDataChoice(\n form_xmlns,\n form_name,\n form\n )\n if as_dict:\n form_choice = form_choice._asdict()\n\n if app_id not in forms_by_app_by_module:\n forms_by_app_by_module[app_id] = collections.defaultdict(list)\n modules_by_app[app_id].append(module_choice)\n forms_by_app_by_module[app_id][module_id].append(form_choice)\n\n modules_by_app = self._get_unique_choices(modules_by_app)\n if as_dict:\n modules_by_app = self._map_chosen_by_choice_as_dict(modules_by_app)\n return modules_by_app, forms_by_app_by_module", "metadata": "root.ApplicationDataRMIHelper._get_modules_and_forms", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 396 }, { "content": " def get_form_rmi_response(self):\n \"\"\"Use this to generate the response that initializes the form\n controlled by hq.app_data_drilldown.ng.js if you are drilling down\n to an XForm + app_id pair\"\"\"\n modules_by_app, forms_by_app_by_module = self._get_modules_and_forms(self.as_dict)\n response = AppFormRMIResponse(\n app_types=self._get_app_type_choices(self.as_dict),\n apps_by_type=self._get_applications_by_type(self.as_dict),\n modules_by_app=modules_by_app,\n forms_by_app_by_module=forms_by_app_by_module,\n placeholders=self.form_placeholders,\n )\n if self.as_dict:\n response = response._asdict()\n return response", "metadata": "root.ApplicationDataRMIHelper.get_form_rmi_response", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 439 }, { "content": " def _get_cases_for_apps(self, apps_by_type, as_dict=True):\n used_case_types = set()\n case_types_by_app = collections.defaultdict(list)\n for app_type, apps in apps_by_type.items():\n for app_choice in apps:\n if not app_choice.id == self.UNKNOWN_SOURCE:\n app = get_app(self.domain, app_choice.id)\n case_types = []\n if hasattr(app, 'modules'):\n case_types = set([\n module.case_type\n for module in app.modules if module.case_type\n ])\n used_case_types = used_case_types.union(case_types)\n case_types = map(lambda c: RMIDataChoice(\n id=c,\n text=c,\n data=app_choice.data\n ), case_types)\n if as_dict:\n case_types = map(lambda c: c._asdict(), case_types)\n case_types_by_app[app_choice.id] = case_types\n else:\n all_case_types = CaseAccessors(self.domain).get_case_types()\n unknown_case_types = all_case_types.difference(used_case_types)\n unknown_case_types = map(lambda c: RMIDataChoice(\n id=c,\n text=c,\n data={\n 'unknown': True,\n }\n ), unknown_case_types)\n if as_dict:\n unknown_case_types = map(lambda c: c._asdict(), unknown_case_types)\n case_types_by_app[self.UNKNOWN_SOURCE] = unknown_case_types\n\n return case_types_by_app", "metadata": "root.ApplicationDataRMIHelper._get_cases_for_apps", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 455 }, { "content": " def get_case_rmi_response(self):\n \"\"\"Use this to generate a response that initializes the form\n controlled by hq.app_data_drilldown.ng.js if you are drilling down to\n a Case Type.\n \"\"\"\n apps_by_type = self._get_applications_by_type(as_dict=False)\n case_types_by_app = self._get_cases_for_apps(apps_by_type, self.as_dict)\n if self.as_dict:\n apps_by_type = self._map_chosen_by_choice_as_dict(apps_by_type)\n response = AppCaseRMIResponse(\n app_types=self._get_app_type_choices(),\n apps_by_type=apps_by_type,\n case_types_by_app=case_types_by_app,\n placeholders=self.case_placeholders\n )\n if self.as_dict:\n response = response._asdict()\n return response", "metadata": "root.ApplicationDataRMIHelper.get_case_rmi_response", "header": "['class', 'ApplicationDataRMIHelper', '(', 'object', ')', ':', '___EOS___']", "index": 493 } ]

[ { "span": "from django.conf import settings", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 32 }, { "span": "from corehq.apps.app_manager.models import Application", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 54 }, { "span": "from couchforms.models import XFormInstance", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 43 } ]

[]

1

false

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"\\u", "manager_", "._", "dba", "ccess", "ors_", "import_", "get", "\\u", "apps", "\\u", "in", "\\u", "domain_", ",_", "get", "\\u", "app_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "core", "hq", "_", "._", "apps_", "._", "app", "\\u", "manager_", "._", "models_", "import_", "Application_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "core", "hq", "_", "._", "form", "\\u", "processor_", "._", "interfaces_", "._", "dba", "ccess", "ors_", "import_", "Case", "Accessor", "s_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "couch", "forms_", "._", "analytics", "_", "import_", "get", "\\u", "export", "s", "\\u", "by", "\\u", "form_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "couch", "forms_", "._", "models_", "import_", "XF", "orm", "Instance_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "dim", "agi", "_", "._", "utils_", "._", "decorators_", "._", "memoized", "_", "import_", "memoized", "_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "Applica", "tion", "Data", "Source_", 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Unused import

taoliu/taolib/CoreLib/BinKeeper/__init__.py

[ { "content": "# Time-stamp: <2011-01-31 17:04:32 Tao Liu>\n\n\"\"\"Module Description: BinKeeper for Wiggle-like tracks.\n\nCopyright (c) 2008 Tao Liu <[email protected]>\n\nThis code is free software; you can redistribute it and/or modify it\nunder the terms of the BSD License (see the file COPYING included with\nthe distribution).\n\n@status: experimental\n@version: $Revision$\n@author: Tao Liu\n@contact: [email protected]\n\"\"\"\n\n# ------------------------------------\n# python modules\n# ------------------------------------\n\nimport sys\nimport re\nfrom bisect import insort,bisect_left,bisect_right\nfrom array import array\n# ------------------------------------\n# constants\n# ------------------------------------\n# to determine the byte size\nif array('H',[1]).itemsize == 2:\n BYTE2 = 'H'\nelse:\n raise Exception(\"BYTE2 type cannot be determined!\")\n\nif array('I',[1]).itemsize == 4:\n BYTE4 = 'I'\nelif array('L',[1]).itemsize == 4:\n BYTE4 = 'L'\nelse:\n raise Exception(\"BYTE4 type cannot be determined!\")\n\nif array('f',[1]).itemsize == 4:\n FBYTE4 = 'f'\nelif array('d',[1]).itemsize == 4:\n FBYTE4 = 'd'\nelse:\n raise Exception(\"BYTE4 type cannot be determined!\")\n\n# ------------------------------------\n# Misc functions\n# ------------------------------------\n\n# ------------------------------------\n# Classes\n# ------------------------------------\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class BinKeeperI:\n \"\"\"BinKeeper keeps point data from a chromosome in a bin list.\n\n Example:\n >>> from taolib.CoreLib.Parser import WiggleIO\n >>> w = WiggleIO('sample.wig')\n >>> bk = w.build_binKeeper()\n >>> bk['chrI'].pp2v(1000,2000) # to extract values in chrI:1000..2000\n \"\"\"\n\n\n\n\n\n\n\n", "metadata": "root.BinKeeperI", "header": "['module', '___EOS___']", "index": 54 }, { "content": " def __init__ (self,binsize=8000,chromosomesize=1e9):\n \"\"\"Initializer.\n\n Parameters:\n binsize : size of bin in Basepair\n chromosomesize : size of chromosome, default is 1G\n \"\"\"\n self.binsize = binsize\n self.binnumber = int(chromosomesize/self.binsize)+1\n self.cage = []\n a = self.cage.append\n for i in xrange(self.binnumber):\n a([array(BYTE4,[]),array(FBYTE4,[])])", "metadata": "root.BinKeeperI.__init__", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 63 }, { "content": " def add ( self, p, value ):\n \"\"\"Add a position into BinKeeper.\n\n Note: position must be sorted before adding. Otherwise, pp2v\n and pp2p will not work.\n \"\"\"\n bin = p/self.binsize\n self.cage[bin][0].append(p)\n self.cage[bin][1].append(value) ", "metadata": "root.BinKeeperI.add", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 77 }, { "content": " def p2bin (self, p ):\n \"\"\"Return the bin index for a position.\n \n \"\"\"\n return p/self.binsize", "metadata": "root.BinKeeperI.p2bin", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 87 }, { "content": " def p2cage (self, p):\n \"\"\"Return the bin containing the position.\n \n \"\"\"\n return self.cage[p/self.binsize]", "metadata": "root.BinKeeperI.p2cage", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 93 }, { "content": " def __pp2cages (self, p1, p2):\n assert p1<=p2\n bin1 = self.p2bin(p1)\n bin2 = self.p2bin(p2)+1\n t = [array(BYTE4,[]),array(FBYTE4,[])]\n for i in xrange(bin1,bin2):\n t[0].extend(self.cage[i][0])\n t[1].extend(self.cage[i][1]) \n return t", "metadata": "root.BinKeeperI.__pp2cages", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 99 }, { "content": " def pp2p (self, p1, p2):\n \"\"\"Give the position list between two given positions.\n\n Parameters:\n p1 : start position\n p2 : end position\n Return Value:\n list of positions between p1 and p2.\n \"\"\"\n (ps,vs) = self.__pp2cages(p1,p2)\n p1_in_cages = bisect_left(ps,p1)\n p2_in_cages = bisect_right(ps,p2)\n return ps[p1_in_cages:p2_in_cages]", "metadata": "root.BinKeeperI.pp2p", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 109 }, { "content": " def pp2v (self, p1, p2):\n \"\"\"Give the value list between two given positions.\n\n Parameters:\n p1 : start position\n p2 : end position\n Return Value:\n list of values whose positions are between p1 and p2.\n \"\"\"\n (ps,vs) = self.__pp2cages(p1,p2)\n p1_in_cages = bisect_left(ps,p1)\n p2_in_cages = bisect_right(ps,p2)\n return vs[p1_in_cages:p2_in_cages]", "metadata": "root.BinKeeperI.pp2v", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 123 }, { "content": " def pp2pv (self, p1, p2):\n \"\"\"Give the (position,value) list between two given positions.\n\n Parameters:\n p1 : start position\n p2 : end position\n Return Value:\n list of (position,value) between p1 and p2.\n \"\"\"\n (ps,vs) = self.__pp2cages(p1,p2)\n p1_in_cages = bisect_left(ps,p1)\n p2_in_cages = bisect_right(ps,p2)\n return zip(ps[p1_in_cages:p2_in_cages],vs[p1_in_cages:p2_in_cages])", "metadata": "root.BinKeeperI.pp2pv", "header": "['class', 'BinKeeperI', ':', '___EOS___']", "index": 138 } ]

[ { "span": "import sys", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 10 }, { "span": "from bisect import insort,bisect_left,bisect_right", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 50 } ]

[]

1

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Imprecise assert

globocom/tornado-es/tornadoes/tests/unit/test_tornadoes.py

[ { "content": " def test_should_make_two_searches(self):\n self._make_multisearch()\n response = self._verify_status_code_and_return_response()\n self.assertEqual(response['responses'][0]['hits']['hits'][0]['_id'], \"171171\")\n self.assertFalse(\"hits\" in response['responses'][1])", "metadata": "root.TestESConnection.test_should_make_two_searches", "header": "['class', 'TestESConnection', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 88 }, { "content": " def test_count_specific_query_with_many_parameters(self):\n source = {\"query\": {\"term\": {\"_id\": \"171171\"}}}\n source = self._set_count_query(source)\n parameters = {'df': '_id', 'test': True}\n self.es_connection.count(callback=self.stop, source=source, parameters=parameters)\n response = self.wait()\n response_dict = self._verify_response_and_returns_dict(response)\n self.assertEqual(response_dict[\"count\"], 1)\n self.assertTrue('df=_id' in response.request.url)\n self.assertTrue('test=True' in response.request.url)", "metadata": "root.TestESConnection.test_count_specific_query_with_many_parameters", "header": "['class', 'TestESConnection', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 168 }, { "content": " @gen_test\n def test_should_make_two_searches(self):\n self._make_multisearch()\n response = yield self.es_connection.apply_search()\n response = self._verify_status_code_and_return_response(response)\n\n self.assertEqual(response['responses'][0]['hits']['hits'][0]['_id'], \"171171\")\n self.assertFalse(\"hits\" in response['responses'][1])", "metadata": "root.TestESConnectionWithTornadoGen.test_should_make_two_searches", "header": "['class', 'TestESConnectionWithTornadoGen', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 221 }, { "content": " @gen_test\n def test_count_specific_query_with_many_parameters(self):\n source = {\"query\": {\"term\": {\"_id\": \"171171\"}}}\n source = self._set_count_query(source)\n parameters = {'df': '_id', 'test': True}\n response = yield self.es_connection.count(callback=self.stop, source=source, parameters=parameters)\n self.assertCount(response, 1)\n self.assertTrue('df=_id' in response.request.url)\n self.assertTrue('test=True' in response.request.url)", "metadata": "root.TestESConnectionWithTornadoGen.test_count_specific_query_with_many_parameters", "header": "['class', 'TestESConnectionWithTornadoGen', '(', 'ESConnectionTestBase', ')', ':', '___EOS___']", "index": 289 } ]

[ { "span": "self.assertFalse(\"hits\" in response['responses'][1])", "start_line": 92, "start_column": 8, "end_line": 92, "end_column": 60 }, { "span": "self.assertTrue('df=_id' in response.request.url)", "start_line": 176, "start_column": 8, "end_line": 176, "end_column": 57 }, { "span": "self.assertTrue('test=True' in response.request.url)", "start_line": 177, "start_column": 8, "end_line": 177, "end_column": 60 }, { "span": "self.assertFalse(\"hits\" in response['responses'][1])", "start_line": 228, "start_column": 8, "end_line": 228, "end_column": 60 }, { "span": "self.assertTrue('df=_id' in response.request.url)", "start_line": 296, "start_column": 8, "end_line": 296, "end_column": 57 }, { "span": "self.assertTrue('test=True' in response.request.url)", "start_line": 297, "start_column": 8, "end_line": 297, "end_column": 60 } ]

[]

1

true

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Unused import

enthought/traitsui/integrationtests/ui/check_list_editor_test2.py

[ { "content": "#-------------------------------------------------------------------------------\n#\n# CheckListEditor test case for Traits UI\n#\n# Written by: David C. Morrill\n#\n# Date: 06/29/2005\n#\n# (c) Copyright 2005 by Enthought, Inc.\n# License: BSD Style.\n#\n#-------------------------------------------------------------------------------\n\n#-------------------------------------------------------------------------------\n# Imports:\n#-------------------------------------------------------------------------------\n\nfrom traits.api \\\n import Enum, List, Str\n\nfrom traitsui.api \\\n import Handler, View, Item, CheckListEditor\n\n#-------------------------------------------------------------------------------\n# 'CheckListTest' class:\n#-------------------------------------------------------------------------------\n\n\n#-------------------------------------------------------------------------------\n# Run the tests:\n#-------------------------------------------------------------------------------\n\nif __name__ == '__main__':\n clt = CheckListTest()\n clt.configure_traits( view = 'simple_view' )\n print 'value:', clt.value\n clt.configure_traits( view = 'custom_view' )\n print 'value:', clt.value\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class CheckListTest ( Handler ):\n\n #---------------------------------------------------------------------------\n # Trait definitions:\n #---------------------------------------------------------------------------\n\n value = List( editor = CheckListEditor( name = 'values', cols = 5 ) )\n values = List( Str )\n values_text = Str( 'red orange yellow green blue indigo violet' )\n\n #---------------------------------------------------------------------------\n # Traits view definitions:\n #---------------------------------------------------------------------------\n\n simple_view = View( 'value', 'values_text@' )\n custom_view = View( 'value@', 'values_text@' )\n\n #---------------------------------------------------------------------------\n # 'Initializes the object:\n #---------------------------------------------------------------------------\n\n\n #---------------------------------------------------------------------------\n # Event handlers:\n #---------------------------------------------------------------------------\n", "metadata": "root.CheckListTest", "header": "['module', '___EOS___']", "index": 27 }, { "content": " def __init__ ( self, **traits ):\n super( CheckListTest, self ).__init__( **traits )\n self._values_text_changed()", "metadata": "root.CheckListTest.__init__", "header": "['class', 'CheckListTest', '(', 'Handler', ')', ':', '___NEWLINE___', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '# Trait definitions:', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '___EOS___']", "index": 48 }, { "content": " def _values_text_changed ( self ):\n self.values = self.values_text.split()", "metadata": "root.CheckListTest._values_text_changed", "header": "['class', 'CheckListTest', '(', 'Handler', ')', ':', '___NEWLINE___', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '# Trait definitions:', '___NL___', '#---------------------------------------------------------------------------', '___NL___', '___EOS___']", "index": 56 } ]

[ { "span": "from traits.api \\\n import Enum, List, Str", "start_line": 17, "start_column": 0, "end_line": 18, "end_column": 26 }, { "span": "from traitsui.api \\\n import Handler, View, Item, CheckListEditor", "start_line": 20, "start_column": 0, "end_line": 21, "end_column": 47 } ]

[]

1

false

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Unused local variable

chrippa/livestreamer/src/livestreamer/packages/flashmedia/amf.py

[ { "content": " @classmethod\n def _deserialize(cls, io):\n name = AMF0String.read(io)\n must_understand = bool(U8.read(io))\n length = U32BE.read(io)\n value = AMF0Value.read(io)\n\n return cls(name, value, must_understand)", "metadata": "root.AMFHeader._deserialize", "header": "['class', 'AMFHeader', '(', 'Packet', ')', ':', '___EOS___']", "index": 27 }, { "content": " @classmethod\n def _deserialize(cls, io):\n target_uri = AMF0String.read(io)\n response_uri = AMF0String.read(io)\n length = U32BE.read(io)\n value = AMF0Value.read(io)\n\n return cls(target_uri, response_uri, value)", "metadata": "root.AMFMessage._deserialize", "header": "['class', 'AMFMessage', '(', 'Packet', ')', ':', '___EOS___']", "index": 60 } ]

[ { "span": "length ", "start_line": 31, "start_column": 8, "end_line": 31, "end_column": 14 }, { "span": "length ", "start_line": 64, "start_column": 8, "end_line": 64, "end_column": 14 } ]

[]

1

true

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Unused import

EasyEngine/easyengine/ee/cli/plugins/site.py

[ { "content": "# \"\"\"EasyEngine site controller.\"\"\"\nfrom cement.core.controller import CementBaseController, expose\nfrom cement.core import handler, hook\nfrom ee.core.cron import EECron\nfrom ee.core.sslutils import SSL\nfrom ee.core.variables import EEVariables\nfrom ee.core.domainvalidate import ValidateDomain\nfrom ee.core.fileutils import EEFileUtils\nfrom ee.cli.plugins.site_functions import *\nfrom ee.core.services import EEService\nfrom ee.cli.plugins.sitedb import *\nfrom ee.core.git import EEGit\nfrom subprocess import Popen\nfrom ee.core.nginxhashbucket import hashbucket\nimport sys\nimport os\nimport glob\nimport subprocess\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def ee_site_hook(app):\n # do something with the ``app`` object here.\n from ee.core.database import init_db\n import ee.cli.plugins.models\n init_db(app)", "metadata": "root.ee_site_hook", "header": "['module', '___EOS___']", "index": 20 }, { "content": "class EESiteController(CementBaseController):\n class Meta:\n label = 'site'\n stacked_on = 'base'\n stacked_type = 'nested'\n description = ('Performs website specific operations')\n arguments = [\n (['site_name'],\n dict(help='Website name', nargs='?')),\n ]\n usage = \"ee site (command) <site_name> [options]\"\n\n\n\n\n\n\n", "metadata": "root.EESiteController", "header": "['module', '___EOS___']", "index": 27 }, { "content": " @expose(hide=True)\n def default(self):\n self.app.args.print_help()", "metadata": "root.EESiteController.default", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 39 }, { "content": " @expose(help=\"Enable site example.com\")\n def enable(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n # validate domain name\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n # check if site exists\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.info(self, \"Enable domain {0:10} \\t\".format(ee_domain), end='')\n EEFileUtils.create_symlink(self,\n ['/etc/nginx/sites-available/{0}'\n .format(ee_domain),\n '/etc/nginx/sites-enabled/{0}'\n .format(ee_domain)])\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"Enabled {0} \"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, enabled=True)\n Log.info(self, \"[\" + Log.ENDC + \"OK\" + Log.OKBLUE + \"]\")\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"nginx configuration file does not exist\"\n .format(ee_domain))", "metadata": "root.EESiteController.enable", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 43 }, { "content": " @expose(help=\"Disable site example.com\")\n def disable(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n\n except IOError as e:\n Log.error(self, 'could not input site name')\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n # check if site exists\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.info(self, \"Disable domain {0:10} \\t\"\n .format(ee_domain), end='')\n if not os.path.isfile('/etc/nginx/sites-enabled/{0}'\n .format(ee_domain)):\n Log.debug(self, \"Site {0} already disabled\".format(ee_domain))\n Log.info(self, \"[\" + Log.FAIL + \"Failed\" + Log.OKBLUE+\"]\")\n else:\n EEFileUtils.remove_symlink(self,\n '/etc/nginx/sites-enabled/{0}'\n .format(ee_domain))\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"Disabled {0} \"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, enabled=False)\n Log.info(self, \"[\" + Log.ENDC + \"OK\" + Log.OKBLUE + \"]\")\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"nginx configuration file does not exist\"\n .format(ee_domain))", "metadata": "root.EESiteController.disable", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 80 }, { "content": " @expose(help=\"Get example.com information\")\n def info(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n ee_db_name = ''\n ee_db_user = ''\n ee_db_pass = ''\n hhvm = ''\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n siteinfo = getSiteInfo(self, ee_domain)\n\n sitetype = siteinfo.site_type\n cachetype = siteinfo.cache_type\n ee_site_webroot = siteinfo.site_path\n access_log = (ee_site_webroot + '/logs/access.log')\n error_log = (ee_site_webroot + '/logs/error.log')\n ee_db_name = siteinfo.db_name\n ee_db_user = siteinfo.db_user\n ee_db_pass = siteinfo.db_password\n ee_db_host = siteinfo.db_host\n if sitetype != \"html\":\n hhvm = (\"enabled\" if siteinfo.is_hhvm else \"disabled\")\n if sitetype == \"proxy\":\n access_log = \"/var/log/nginx/{0}.access.log\".format(ee_domain)\n error_log = \"/var/log/nginx/{0}.error.log\".format(ee_domain)\n ee_site_webroot = ''\n\n php_version = siteinfo.php_version\n pagespeed = (\"enabled\" if siteinfo.is_pagespeed else \"disabled\")\n ssl = (\"enabled\" if siteinfo.is_ssl else \"disabled\")\n if (ssl == \"enabled\"):\n sslprovider = \"Lets Encrypt\"\n sslexpiry = str(SSL.getExpirationDate(self,ee_domain))\n else:\n sslprovider = ''\n sslexpiry = ''\n data = dict(domain=ee_domain, webroot=ee_site_webroot,\n accesslog=access_log, errorlog=error_log,\n dbname=ee_db_name, dbuser=ee_db_user,php_version=php_version,\n dbpass=ee_db_pass, hhvm=hhvm, pagespeed=pagespeed,\n ssl=ssl, sslprovider=sslprovider, sslexpiry= sslexpiry,\n type=sitetype + \" \" + cachetype + \" ({0})\"\n .format(\"enabled\" if siteinfo.is_enabled else\n \"disabled\"))\n self.app.render((data), 'siteinfo.mustache')\n else:\n Log.error(self, \"nginx configuration file does not exist\"\n .format(ee_domain))", "metadata": "root.EESiteController.info", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 120 }, { "content": " @expose(help=\"Monitor example.com logs\")\n def log(self):\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n ee_site_webroot = getSiteInfo(self, ee_domain).site_path\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n logfiles = glob.glob(ee_site_webroot + '/logs/*.log')\n if logfiles:\n logwatch(self, logfiles)", "metadata": "root.EESiteController.log", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 180 }, { "content": " @expose(help=\"Display Nginx configuration of example.com\")\n def show(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n # TODO Write code for ee site edit command here\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.info(self, \"Display NGINX configuration for {0}\"\n .format(ee_domain))\n f = open('/etc/nginx/sites-available/{0}'.format(ee_domain),\n encoding='utf-8', mode='r')\n text = f.read()\n Log.info(self, Log.ENDC + text)\n f.close()\n else:\n Log.error(self, \"nginx configuration file does not exists\"\n .format(ee_domain))", "metadata": "root.EESiteController.show", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 192 }, { "content": " @expose(help=\"Change directory to site webroot\")\n def cd(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'Unable to read input, please try again')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n ee_site_webroot = getSiteInfo(self, ee_domain).site_path\n EEFileUtils.chdir(self, ee_site_webroot)\n\n try:\n subprocess.call(['bash'])\n except OSError as e:\n Log.debug(self, \"{0}{1}\".format(e.errno, e.strerror))\n Log.error(self, \"unable to change directory\")", "metadata": "root.EESiteController.cd", "header": "['class', 'EESiteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 221 }, { "content": "class EESiteEditController(CementBaseController):\n class Meta:\n label = 'edit'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = ('Edit Nginx configuration of site')\n arguments = [\n (['site_name'],\n dict(help='domain name for the site',\n nargs='?')),\n (['--pagespeed'],\n dict(help=\"edit pagespeed configuration for site\",\n action='store_true')),\n ]\n", "metadata": "root.EESiteEditController", "header": "['module', '___EOS___']", "index": 247 }, { "content": " @expose(hide=True)\n def default(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'Unable to read input, Please try again')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n ee_site_webroot = EEVariables.ee_webroot + ee_domain\n\n if not self.app.pargs.pagespeed:\n if os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n try:\n EEShellExec.invoke_editor(self, '/etc/nginx/sites-availa'\n 'ble/{0}'.format(ee_domain))\n except CommandExecutionError as e:\n Log.error(self, \"Failed invoke editor\")\n if (EEGit.checkfilestatus(self, \"/etc/nginx\",\n '/etc/nginx/sites-available/{0}'.format(ee_domain))):\n EEGit.add(self, [\"/etc/nginx\"], msg=\"Edit website: {0}\"\n .format(ee_domain))\n # Reload NGINX\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"nginx configuration file does not exists\"\n .format(ee_domain))\n\n elif self.app.pargs.pagespeed:\n if os.path.isfile('{0}/conf/nginx/pagespeed.conf'\n .format(ee_site_webroot)):\n try:\n EEShellExec.invoke_editor(self, '{0}/conf/nginx/'\n 'pagespeed.conf'\n .format(ee_site_webroot))\n except CommandExecutionError as e:\n Log.error(self, \"Failed invoke editor\")\n if (EEGit.checkfilestatus(self, \"{0}/conf/nginx\"\n .format(ee_site_webroot),\n '{0}/conf/nginx/pagespeed.conf'.format(ee_site_webroot))):\n EEGit.add(self, [\"{0}/conf/nginx\".format(ee_site_webroot)],\n msg=\"Edit Pagespped config of site: {0}\"\n .format(ee_domain))\n # Reload NGINX\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n else:\n Log.error(self, \"Pagespeed configuration file does not exists\"\n .format(ee_domain))", "metadata": "root.EESiteEditController.default", "header": "['class', 'EESiteEditController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 262 }, { "content": "class EESiteCreateController(CementBaseController):\n class Meta:\n label = 'create'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = ('this commands set up configuration and installs '\n 'required files as options are provided')\n arguments = [\n (['site_name'],\n dict(help='domain name for the site to be created.',\n nargs='?')),\n (['--html'],\n dict(help=\"create html site\", action='store_true')),\n (['--php'],\n dict(help=\"create php site\", action='store_true')),\n (['--php7'],\n dict(help=\"create php 7.0 site\", action='store_true')),\n (['--mysql'],\n dict(help=\"create mysql site\", action='store_true')),\n (['--wp'],\n dict(help=\"create wordpress single site\",\n action='store_true')),\n (['--wpsubdir'],\n dict(help=\"create wordpress multisite with subdirectory setup\",\n action='store_true')),\n (['--wpsubdomain'],\n dict(help=\"create wordpress multisite with subdomain setup\",\n action='store_true')),\n (['--w3tc'],\n dict(help=\"create wordpress single/multi site with w3tc cache\",\n action='store_true')),\n (['--wpfc'],\n dict(help=\"create wordpress single/multi site with wpfc cache\",\n action='store_true')),\n (['--wpsc'],\n dict(help=\"create wordpress single/multi site with wpsc cache\",\n action='store_true')),\n (['--wpredis'],\n dict(help=\"create wordpress single/multi site with redis cache\",\n action='store_true')),\n (['--hhvm'],\n dict(help=\"create HHVM site\", action='store_true')),\n (['--pagespeed'],\n dict(help=\"create pagespeed site\", action='store_true')),\n (['-le','--letsencrypt'],\n dict(help=\"configure letsencrypt ssl for the site\", action='store_true')),\n (['--user'],\n dict(help=\"provide user for wordpress site\")),\n (['--email'],\n dict(help=\"provide email address for wordpress site\")),\n (['--pass'],\n dict(help=\"provide password for wordpress user\",\n dest='wppass')),\n (['--proxy'],\n dict(help=\"create proxy for site\", nargs='+')),\n (['--experimental'],\n dict(help=\"Enable Experimenal packages without prompt\",\n action='store_true')),\n ]\n", "metadata": "root.EESiteCreateController", "header": "['module', '___EOS___']", "index": 324 }, { "content": " @expose(hide=True)\n def default(self):\n # self.app.render((data), 'default.mustache')\n # Check domain name validation\n data = dict()\n host, port = None, None\n try:\n stype, cache = detSitePar(vars(self.app.pargs))\n except RuntimeError as e:\n Log.debug(self, str(e))\n Log.error(self, \"Please provide valid options to creating site\")\n\n if stype is None and self.app.pargs.proxy:\n stype, cache = 'proxy', ''\n proxyinfo = self.app.pargs.proxy[0].strip()\n if not proxyinfo:\n Log.error(self, \"Please provide proxy server host information\")\n proxyinfo = proxyinfo.split(':')\n host = proxyinfo[0].strip()\n port = '80' if len(proxyinfo) < 2 else proxyinfo[1].strip()\n elif stype is None and not self.app.pargs.proxy:\n stype, cache = 'html', 'basic'\n elif stype and self.app.pargs.proxy:\n Log.error(self, \"proxy should not be used with other site types\")\n if (self.app.pargs.proxy and (self.app.pargs.pagespeed\n or self.app.pargs.hhvm)):\n Log.error(self, \"Proxy site can not run on pagespeed or hhvm\")\n\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n # preprocessing before finalize site name\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.debug(self, str(e))\n Log.error(self, \"Unable to input site name, Please try again!\")\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n\n if not ee_domain.strip():\n Log.error(\"Invalid domain name, \"\n \"Provide valid domain name\")\n\n ee_site_webroot = EEVariables.ee_webroot + ee_domain\n\n if check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} already exists\".format(ee_domain))\n elif os.path.isfile('/etc/nginx/sites-available/{0}'\n .format(ee_domain)):\n Log.error(self, \"Nginx configuration /etc/nginx/sites-available/\"\n \"{0} already exists\".format(ee_domain))\n\n if stype == 'proxy':\n data['site_name'] = ee_domain\n data['www_domain'] = ee_www_domain\n data['proxy'] = True\n data['host'] = host\n data['port'] = port\n ee_site_webroot = \"\"\n\n if self.app.pargs.php7:\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=False, php7=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot)\n data['basic'] = True\n\n if stype in ['html', 'php' ]:\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=True, basic=False, php7=False, wp=False, w3tc=False,\n wpfc=False, wpsc=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot)\n\n if stype == 'php':\n data['static'] = False\n data['basic'] = True\n\n elif stype in ['mysql', 'wp', 'wpsubdir', 'wpsubdomain']:\n\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, wpredis=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot,\n ee_db_name='', ee_db_user='', ee_db_pass='',\n ee_db_host='')\n\n if stype in ['wp', 'wpsubdir', 'wpsubdomain']:\n data['wp'] = True\n data['basic'] = False\n data[cache] = True\n data['wp-user'] = self.app.pargs.user\n data['wp-email'] = self.app.pargs.email\n data['wp-pass'] = self.app.pargs.wppass\n if stype in ['wpsubdir', 'wpsubdomain']:\n data['multisite'] = True\n if stype == 'wpsubdir':\n data['wpsubdir'] = True\n else:\n pass\n\n if stype == \"html\" and self.app.pargs.hhvm:\n Log.error(self, \"Can not create HTML site with HHVM\")\n\n if data and self.app.pargs.php7:\n if (not self.app.pargs.experimental):\n Log.info(self, \"PHP7.0 is experimental feature and it may not \"\n \"work with all CSS/JS/Cache of your site.\\nDo you wish\"\n \" to install PHP 7.0 now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using PHP 7.0 for site.\")\n data['php7'] = False\n data['basic'] = True\n php7 = 0\n self.app.pargs.php7 = False\n else:\n data['php7'] = True\n php7 = 1\n else:\n data['php7'] = True\n php7 = 1\n elif data:\n data['php7'] = False\n php7 = 0\n\n if (not self.app.pargs.w3tc) and\\\n (not self.app.pargs.wpfc) and (not self.app.pargs.wpsc) and (not self.app.pargs.wpredis) \\\n and (not self.app.pargs.hhvm):\n data['basic'] = True\n\n #for debug purpose\n #for key, value in data.items() :\n # print (key, value)\n\n\n if data and self.app.pargs.hhvm:\n if (not self.app.pargs.experimental):\n Log.info(self, \"HHVM is experimental feature and it may not \"\n \"work with all plugins of your site.\\nYou can \"\n \"disable it by passing --hhvm=off later.\\nDo you wish\"\n \" to enable HHVM now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using HHVM for site.\")\n data['hhvm'] = False\n hhvm = 0\n self.app.pargs.hhvm = False\n else:\n data['hhvm'] = True\n hhvm = 1\n else:\n data['hhvm'] = True\n hhvm = 1\n\n elif data:\n data['hhvm'] = False\n hhvm = 0\n\n if data and self.app.pargs.pagespeed:\n if (not self.app.pargs.experimental):\n Log.info(self, \"PageSpeed is experimental feature and it may not \"\n \"work with all CSS/JS/Cache of your site.\\nYou can \"\n \"disable it by passing --pagespeed=off later.\\nDo you wish\"\n \" to enable PageSpeed now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using PageSpeed for site.\")\n data['pagespeed'] = False\n pagespeed = 0\n self.app.pargs.pagespeed = False\n else:\n data['pagespeed'] = True\n pagespeed = 1\n else:\n data['pagespeed'] = True\n pagespeed = 1\n elif data:\n data['pagespeed'] = False\n pagespeed = 0\n\n if (cache == 'wpredis' and (not self.app.pargs.experimental)):\n Log.info(self, \"Redis is experimental feature and it may not \"\n \"work with all CSS/JS/Cache of your site.\\nYou can \"\n \"disable it by changing cache later.\\nDo you wish\"\n \" to enable Redis now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.error(self, \"Not using Redis for site\")\n cache = 'basic'\n data['wpredis'] = False\n data['basic'] = True\n self.app.pargs.wpredis = False\n\n # self.app.args.print_help()\n # if not data:\n # self.app.close(1)\n\n # Check rerequired packages are installed or not\n ee_auth = site_package_check(self, stype)\n\n try:\n pre_run_checks(self)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.error(self, \"NGINX configuration check failed.\")\n\n try:\n try:\n # setup NGINX configuration, and webroot\n setupdomain(self, data)\n\n # Fix Nginx Hashbucket size error\n hashbucket(self)\n except SiteError as e:\n # call cleanup actions on failure\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'])\n Log.debug(self, str(e))\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n if 'proxy' in data.keys() and data['proxy']:\n addNewSite(self, ee_domain, stype, cache, ee_site_webroot)\n # Service Nginx Reload\n if not EEService.reload_service(self, 'nginx'):\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain)\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n if ee_auth and len(ee_auth):\n for msg in ee_auth:\n Log.info(self, Log.ENDC + msg, log=False)\n Log.info(self, \"Successfully created site\"\n \" http://{0}\".format(ee_domain))\n return\n # Update pagespeed config\n if self.app.pargs.pagespeed:\n operateOnPagespeed(self, data)\n\n if data['php7']:\n php_version = \"7.0\"\n else:\n php_version = \"5.6\"\n\n\n addNewSite(self, ee_domain, stype, cache, ee_site_webroot,\n hhvm=hhvm, pagespeed=pagespeed, php_version=php_version)\n\n # Setup database for MySQL site\n if 'ee_db_name' in data.keys() and not data['wp']:\n try:\n data = setupdatabase(self, data)\n # Add database information for site into database\n updateSiteInfo(self, ee_domain, db_name=data['ee_db_name'],\n db_user=data['ee_db_user'],\n db_password=data['ee_db_pass'],\n db_host=data['ee_db_host'])\n except SiteError as e:\n # call cleanup actions on failure\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'],\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_db_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n try:\n eedbconfig = open(\"{0}/ee-config.php\"\n .format(ee_site_webroot),\n encoding='utf-8', mode='w')\n eedbconfig.write(\"<?php \\ndefine('DB_NAME', '{0}');\"\n \"\\ndefine('DB_USER', '{1}'); \"\n \"\\ndefine('DB_PASSWORD', '{2}');\"\n \"\\ndefine('DB_HOST', '{3}');\\n?>\"\n .format(data['ee_db_name'],\n data['ee_db_user'],\n data['ee_db_pass'],\n data['ee_db_host']))\n eedbconfig.close()\n stype = 'mysql'\n except IOError as e:\n Log.debug(self, str(e))\n Log.debug(self, \"Error occured while generating \"\n \"ee-config.php\")\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'],\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_db_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n # Setup WordPress if Wordpress site\n if data['wp']:\n try:\n ee_wp_creds = setupwordpress(self, data)\n # Add database information for site into database\n updateSiteInfo(self, ee_domain, db_name=data['ee_db_name'],\n db_user=data['ee_db_user'],\n db_password=data['ee_db_pass'],\n db_host=data['ee_db_host'])\n except SiteError as e:\n # call cleanup actions on failure\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'],\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_mysql_grant_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n # Service Nginx Reload call cleanup if failed to reload nginx\n if not EEService.reload_service(self, 'nginx'):\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'])\n if 'ee_db_name' in data.keys():\n doCleanupAction(self, domain=ee_domain,\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_mysql_grant_host'])\n deleteSiteInfo(self, ee_domain)\n Log.info(self, Log.FAIL + \"service nginx reload failed.\"\n \" check issues with `nginx -t` command.\")\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"{0} created with {1} {2}\"\n .format(ee_www_domain, stype, cache))\n # Setup Permissions for webroot\n try:\n setwebrootpermissions(self, data['webroot'])\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Oops Something went wrong !!\")\n Log.info(self, Log.FAIL + \"Calling cleanup actions ...\")\n doCleanupAction(self, domain=ee_domain,\n webroot=data['webroot'])\n if 'ee_db_name' in data.keys():\n print(\"Inside db cleanup\")\n doCleanupAction(self, domain=ee_domain,\n dbname=data['ee_db_name'],\n dbuser=data['ee_db_user'],\n dbhost=data['ee_mysql_grant_host'])\n deleteSiteInfo(self, ee_domain)\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n if ee_auth and len(ee_auth):\n for msg in ee_auth:\n Log.info(self, Log.ENDC + msg, log=False)\n\n if data['wp']:\n Log.info(self, Log.ENDC + \"WordPress admin user :\"\n \" {0}\".format(ee_wp_creds['wp_user']), log=False)\n Log.info(self, Log.ENDC + \"WordPress admin user password : {0}\"\n .format(ee_wp_creds['wp_pass']), log=False)\n\n display_cache_settings(self, data)\n\n Log.info(self, \"Successfully created site\"\n \" http://{0}\".format(ee_domain))\n except SiteError as e:\n Log.error(self, \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n\n if self.app.pargs.letsencrypt :\n if (not self.app.pargs.experimental):\n if stype in ['wpsubdomain']:\n\t Log.warn(self, \"Wildcard domains are not supported in Lets Encrypt.\\nWP SUBDOMAIN site will get SSL for primary site only.\")\n\n Log.info(self, \"Letsencrypt is currently in beta phase.\"\n \" \\nDo you wish\"\n \" to enable SSl now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n data['letsencrypt'] = False\n letsencrypt = False\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n\n if data['letsencrypt'] is True:\n setupLetsEncrypt(self, ee_domain)\n httpsRedirect(self,ee_domain)\n Log.info(self,\"Creating Cron Job for cert auto-renewal\")\n EECron.setcron_weekly(self,'ee site update --le=renew --all 2> /dev/null'.format(ee_domain),'Renew all'\n ' letsencrypt SSL cert. Set by EasyEngine')\n\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n Log.info(self, \"Congratulations! Successfully Configured SSl for Site \"\n \" https://{0}\".format(ee_domain))\n\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n else:\n Log.warn(self, \"Your cert already EXPIRED ! .PLEASE renew soon . \")\n\n # Add nginx conf folder into GIT\n EEGit.add(self, [\"{0}/conf/nginx\".format(ee_site_webroot)],\n msg=\"Adding letsencrypts config of site: {0}\"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, ssl=letsencrypt)\n\n elif data['letsencrypt'] is False:\n Log.info(self, \"Not using Let\\'s encrypt for Site \"\n \" http://{0}\".format(ee_domain))", "metadata": "root.EESiteCreateController.default", "header": "['class', 'EESiteCreateController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 384 }, { "content": "class EESiteUpdateController(CementBaseController):\n class Meta:\n label = 'update'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = ('This command updates websites configuration to '\n 'another as per the options are provided')\n arguments = [\n (['site_name'],\n dict(help='domain name for the site to be updated',\n nargs='?')),\n (['--password'],\n dict(help=\"update to password for wordpress site user\",\n action='store_true')),\n (['--html'],\n dict(help=\"update to html site\", action='store_true')),\n (['--php'],\n dict(help=\"update to php site\", action='store_true')),\n (['--php7'],\n dict(help=\"update to php7 site\",\n action='store' or 'store_const',\n choices=('on', 'off'), const='on', nargs='?')),\n (['--mysql'],\n dict(help=\"update to mysql site\", action='store_true')),\n (['--wp'],\n dict(help=\"update to wordpress single site\",\n action='store_true')),\n (['--wpsubdir'],\n dict(help=\"update to wpsubdir site\", action='store_true')),\n (['--wpsubdomain'],\n dict(help=\"update to wpsubdomain site\", action='store_true')),\n (['--w3tc'],\n dict(help=\"update to w3tc cache\", action='store_true')),\n (['--wpfc'],\n dict(help=\"update to wpfc cache\", action='store_true')),\n (['--wpsc'],\n dict(help=\"update to wpsc cache\", action='store_true')),\n (['--wpredis'],\n dict(help=\"update to redis cache\", action='store_true')),\n (['--hhvm'],\n dict(help='Use HHVM for site',\n action='store' or 'store_const',\n choices=('on', 'off'), const='on', nargs='?')),\n (['--pagespeed'],\n dict(help='Use PageSpeed for site',\n action='store' or 'store_const',\n choices=('on', 'off'), const='on', nargs='?')),\n (['-le','--letsencrypt'],\n dict(help=\"configure letsencrypt ssl for the site\",\n action='store' or 'store_const',\n choices=('on', 'off', 'renew'), const='on', nargs='?')),\n (['--proxy'],\n dict(help=\"update to proxy site\", nargs='+')),\n (['--experimental'],\n dict(help=\"Enable Experimenal packages without prompt\",\n action='store_true')),\n (['--all'],\n dict(help=\"update all sites\", action='store_true')),\n ]\n\n", "metadata": "root.EESiteUpdateController", "header": "['module', '___EOS___']", "index": 833 }, { "content": " @expose(help=\"Update site type or cache\")\n def default(self):\n pargs = self.app.pargs\n\n if pargs.all:\n if pargs.site_name:\n Log.error(self, \"`--all` option cannot be used with site name\"\n \" provided\")\n if pargs.html:\n Log.error(self, \"No site can be updated to html\")\n\n if not (pargs.php or pargs.php7 or\n pargs.mysql or pargs.wp or pargs.wpsubdir or\n pargs.wpsubdomain or pargs.w3tc or pargs.wpfc or\n pargs.wpsc or pargs.hhvm or pargs.pagespeed or pargs.wpredis or pargs.letsencrypt):\n Log.error(self, \"Please provide options to update sites.\")\n\n if pargs.all:\n if pargs.site_name:\n Log.error(self, \"`--all` option cannot be used with site name\"\n \" provided\")\n\n sites = getAllsites(self)\n if not sites:\n pass\n else:\n for site in sites:\n pargs.site_name = site.sitename\n Log.info(self, Log.ENDC + Log.BOLD + \"Updating site {0},\"\n \" please wait...\"\n .format(pargs.site_name))\n self.doupdatesite(pargs)\n print(\"\\n\")\n else:\n self.doupdatesite(pargs)", "metadata": "root.EESiteUpdateController.default", "header": "['class', 'EESiteUpdateController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 893 }, { "content": " def doupdatesite(self, pargs):\n hhvm = None\n pagespeed = None\n letsencrypt = False\n php7 = None\n\n\n data = dict()\n try:\n stype, cache = detSitePar(vars(pargs))\n except RuntimeError as e:\n Log.debug(self, str(e))\n Log.error(self, \"Please provide valid options combination for\"\n \" site update\")\n\n if stype is None and pargs.proxy:\n stype, cache = 'proxy', ''\n proxyinfo = pargs.proxy[0].strip()\n if not proxyinfo:\n Log.error(self, \"Please provide proxy server host information\")\n proxyinfo = proxyinfo.split(':')\n host = proxyinfo[0].strip()\n port = '80' if len(proxyinfo) < 2 else proxyinfo[1].strip()\n elif stype is None and not (pargs.proxy or pargs.letsencrypt):\n stype, cache = 'html', 'basic'\n elif stype and pargs.proxy:\n Log.error(self, \"--proxy can not be used with other site types\")\n if (pargs.proxy and (pargs.pagespeed or pargs.hhvm)):\n Log.error(self, \"Proxy site can not run on pagespeed or hhvm\")\n\n if not pargs.site_name:\n try:\n while not pargs.site_name:\n pargs.site_name = (input('Enter site name : ').strip())\n except IOError as e:\n Log.error(self, 'Unable to input site name, Please try again!')\n\n pargs.site_name = pargs.site_name.strip()\n (ee_domain,\n ee_www_domain, ) = ValidateDomain(pargs.site_name)\n ee_site_webroot = EEVariables.ee_webroot + ee_domain\n\n check_site = getSiteInfo(self, ee_domain)\n\n if check_site is None:\n Log.error(self, \" Site {0} does not exist.\".format(ee_domain))\n else:\n oldsitetype = check_site.site_type\n oldcachetype = check_site.cache_type\n old_hhvm = check_site.is_hhvm\n old_pagespeed = check_site.is_pagespeed\n check_ssl = check_site.is_ssl\n check_php_version = check_site.php_version\n\n if check_php_version == \"7.0\":\n old_php7 = True\n else:\n old_php7 = False\n\n if (pargs.password and not (pargs.html or\n pargs.php or pargs.php7 or pargs.mysql or pargs.wp or\n pargs.w3tc or pargs.wpfc or pargs.wpsc\n or pargs.wpsubdir or pargs.wpsubdomain)):\n try:\n updatewpuserpassword(self, ee_domain, ee_site_webroot)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, \"\\nPassword Unchanged.\")\n return 0\n\n if ((stype == \"proxy\" and stype == oldsitetype and self.app.pargs.hhvm)\n or (stype == \"proxy\" and\n stype == oldsitetype and self.app.pargs.pagespeed)):\n Log.info(self, Log.FAIL +\n \"Can not update proxy site to HHVM or Pagespeed\")\n return 1\n if stype == \"html\" and stype == oldsitetype and self.app.pargs.hhvm:\n Log.info(self, Log.FAIL + \"Can not update HTML site to HHVM\")\n return 1\n\n if ((stype == 'php' and oldsitetype not in ['html', 'proxy', 'php7']) or\n # (stype == 'php7' and oldsitetype not in ['html', 'mysql', 'php', 'php7', 'wp', 'wpsubdir', 'wpsubdomain', ]) or\n (stype == 'mysql' and oldsitetype not in ['html', 'php',\n 'proxy','php7']) or\n (stype == 'wp' and oldsitetype not in ['html', 'php', 'mysql',\n 'proxy', 'wp', 'php7']) or\n (stype == 'wpsubdir' and oldsitetype in ['wpsubdomain']) or\n (stype == 'wpsubdomain' and oldsitetype in ['wpsubdir']) or\n (stype == oldsitetype and cache == oldcachetype) and\n not (pargs.pagespeed or pargs.php7)):\n Log.info(self, Log.FAIL + \"can not update {0} {1} to {2} {3}\".\n format(oldsitetype, oldcachetype, stype, cache))\n return 1\n\n if stype == 'proxy':\n data['site_name'] = ee_domain\n data['www_domain'] = ee_www_domain\n data['proxy'] = True\n data['host'] = host\n data['port'] = port\n pagespeed = False\n hhvm = False\n data['webroot'] = ee_site_webroot\n data['currsitetype'] = oldsitetype\n data['currcachetype'] = oldcachetype\n\n if stype == 'php':\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, wpredis=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot,\n currsitetype=oldsitetype, currcachetype=oldcachetype)\n\n elif stype in ['mysql', 'wp', 'wpsubdir', 'wpsubdomain']:\n\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n static=False, basic=True, wp=False, w3tc=False,\n wpfc=False, wpsc=False, wpredis=False, multisite=False,\n wpsubdir=False, webroot=ee_site_webroot,\n ee_db_name='', ee_db_user='', ee_db_pass='',\n ee_db_host='',\n currsitetype=oldsitetype, currcachetype=oldcachetype)\n\n if stype in ['wp', 'wpsubdir', 'wpsubdomain']:\n data['wp'] = True\n data['basic'] = False\n data[cache] = True\n if stype in ['wpsubdir', 'wpsubdomain']:\n data['multisite'] = True\n if stype == 'wpsubdir':\n data['wpsubdir'] = True\n\n if pargs.pagespeed or pargs.hhvm or pargs.php7:\n if not data:\n data = dict(site_name=ee_domain, www_domain=ee_www_domain,\n currsitetype=oldsitetype,\n currcachetype=oldcachetype,\n webroot=ee_site_webroot)\n stype = oldsitetype\n cache = oldcachetype\n if oldsitetype == 'html' or oldsitetype == 'proxy':\n data['static'] = True\n data['wp'] = False\n data['multisite'] = False\n data['wpsubdir'] = False\n elif oldsitetype == 'php' or oldsitetype == 'mysql':\n data['static'] = False\n data['wp'] = False\n data['multisite'] = False\n data['wpsubdir'] = False\n elif oldsitetype == 'wp':\n data['static'] = False\n data['wp'] = True\n data['multisite'] = False\n data['wpsubdir'] = False\n elif oldsitetype == 'wpsubdir':\n data['static'] = False\n data['wp'] = True\n data['multisite'] = True\n data['wpsubdir'] = True\n elif oldsitetype == 'wpsubdomain':\n data['static'] = False\n data['wp'] = True\n data['multisite'] = True\n data['wpsubdir'] = False\n\n if oldcachetype == 'basic':\n data['basic'] = True\n data['w3tc'] = False\n data['wpfc'] = False\n data['wpsc'] = False\n data['wpredis'] = False\n elif oldcachetype == 'w3tc':\n data['basic'] = False\n data['w3tc'] = True\n data['wpfc'] = False\n data['wpsc'] = False\n data['wpredis'] = False\n elif oldcachetype == 'wpfc':\n data['basic'] = False\n data['w3tc'] = False\n data['wpfc'] = True\n data['wpsc'] = False\n data['wpredis'] = False\n elif oldcachetype == 'wpsc':\n data['basic'] = False\n data['w3tc'] = False\n data['wpfc'] = False\n data['wpsc'] = True\n data['wpredis'] = False\n elif oldcachetype == 'wpredis':\n data['basic'] = False\n data['w3tc'] = False\n data['wpfc'] = False\n data['wpsc'] = False\n data['wpredis'] = True\n\n if pargs.hhvm != 'off':\n data['hhvm'] = True\n hhvm = True\n elif pargs.hhvm == 'off':\n data['hhvm'] = False\n hhvm = False\n\n if pargs.pagespeed != 'off':\n data['pagespeed'] = True\n pagespeed = True\n elif pargs.pagespeed == 'off':\n data['pagespeed'] = False\n pagespeed = False\n\n if pargs.php7 == 'on' :\n data['php7'] = True\n php7 = True\n check_php_version= '7.0'\n elif pargs.php7 == 'off':\n data['php7'] = False\n php7 = False\n check_php_version = '5.6'\n\n if pargs.pagespeed:\n if pagespeed is old_pagespeed:\n if pagespeed is False:\n Log.info(self, \"Pagespeed is already disabled for given \"\n \"site\")\n elif pagespeed is True:\n Log.info(self, \"Pagespeed is already enabled for given \"\n \"site\")\n pargs.pagespeed = False\n\n if pargs.php7:\n if php7 is old_php7:\n if php7 is False:\n Log.info(self, \"PHP 7.0 is already disabled for given \"\n \"site\")\n elif php7 is True:\n Log.info(self, \"PHP 7.0 is already enabled for given \"\n \"site\")\n pargs.php7 = False\n\n #--letsencrypt=renew code goes here\n if pargs.letsencrypt == \"renew\" and not pargs.all:\n expiry_days = SSL.getExpirationDays(self,ee_domain)\n min_expiry_days = 30\n if check_ssl:\n if (expiry_days <= min_expiry_days):\n renewLetsEncrypt(self,ee_domain)\n else:\n Log.error(self,\"More than 30 days left for certificate Expiry. Not renewing now.\")\n\n else:\n Log.error(self,\"Cannot RENEW ! SSL is not configured for given site .\")\n\n Log.info(self, \"SUCCESS: Certificate was successfully renewed For\"\n \" https://{0}\".format(ee_domain))\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n Log.info(self, \"Expiration DATE: \" + str(SSL.getExpirationDate(self,ee_domain)))\n\n else:\n Log.warn(self, \"Your cert already EXPIRED !. PLEASE renew soon . \")\n\n if pargs.all and pargs.letsencrypt == \"renew\":\n\n if check_ssl:\n expiry_days = SSL.getExpirationDays(self,ee_domain,True)\n if expiry_days < 0:\n return 0\n min_expiry_days = 30\n if (expiry_days <= min_expiry_days):\n renewLetsEncrypt(self,ee_domain)\n Log.info(self, \"SUCCESS: Certificate was successfully renewed For\"\n \" https://{0}\".format(ee_domain))\n else:\n Log.info(self,\"More than 60 days left for certificate Expiry. Not renewing now.\\n\")\n\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n Log.info(self, \"Expiration DATE: \\n\\n\" + str(SSL.getExpirationDate(self,ee_domain)))\n return 0\n #else:\n # Log.warn(self, \"Your cert already EXPIRED ! .PLEASE renew soon . \")\n else:\n Log.info(self,\"SSL not configured for site http://{0}\".format(ee_domain))\n return 0\n\n if pargs.all and pargs.letsencrypt == \"off\":\n if letsencrypt is check_ssl:\n if letsencrypt is False:\n Log.error(self, \"SSl is not configured for given \"\n \"site\",False)\n return 0\n\n if pargs.letsencrypt:\n if pargs.letsencrypt == 'on':\n data['letsencrypt'] = True\n letsencrypt = True\n elif pargs.letsencrypt == 'off':\n data['letsencrypt'] = False\n letsencrypt = False\n\n if letsencrypt is check_ssl:\n if letsencrypt is False:\n Log.error(self, \"SSl is not configured for given \"\n \"site\")\n elif letsencrypt is True:\n Log.error(self, \"SSl is already configured for given \"\n \"site\")\n pargs.letsencrypt = False\n\n if pargs.hhvm:\n if hhvm is old_hhvm:\n if hhvm is False:\n Log.info(self, \"HHVM is allready disabled for given \"\n \"site\")\n elif hhvm is True:\n Log.info(self, \"HHVM is allready enabled for given \"\n \"site\")\n\n pargs.hhvm = False\n\n if data and (not pargs.hhvm):\n if old_hhvm is True:\n data['hhvm'] = True\n hhvm = True\n else:\n data['hhvm'] = False\n hhvm = False\n\n if data and (not pargs.pagespeed):\n if old_pagespeed is True:\n data['pagespeed'] = True\n pagespeed = True\n else:\n data['pagespeed'] = False\n pagespeed = False\n\n if data and (not pargs.php7):\n if old_php7 is True:\n data['php7'] = True\n php7 = True\n else:\n data['php7'] = False\n php7 = False\n\n if pargs.pagespeed==\"on\" or pargs.hhvm==\"on\" or pargs.letsencrypt==\"on\" or pargs.php7==\"on\":\n if pargs.php7 == \"on\":\n if (not pargs.experimental):\n Log.info(self, \"PHP7.0 is experimental feature and it may not\"\n \" work with all plugins of your site.\\nYou can \"\n \"disable it by passing --php7=off later.\\nDo you wish\"\n \" to enable PHP now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using PHP 7.0 for site\")\n data['php7'] = False\n php7 = False\n else:\n data['php7'] = True\n php7 = True\n else:\n data['php7'] = True\n php7 = True\n\n if pargs.hhvm == \"on\":\n if (not pargs.experimental):\n Log.info(self, \"HHVM is experimental feature and it may not\"\n \" work with all plugins of your site.\\nYou can \"\n \"disable it by passing --hhvm=off later.\\nDo you wish\"\n \" to enable HHVM now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using HHVM for site\")\n data['hhvm'] = False\n hhvm = False\n else:\n data['hhvm'] = True\n hhvm = True\n else:\n data['hhvm'] = True\n hhvm = True\n\n if pargs.pagespeed==\"on\":\n if (not pargs.experimental):\n Log.info(self, \"PageSpeed is experimental feature and it may not\"\n \" work with all CSS/JS/Cache of your site.\\nYou can \"\n \"disable it by passing --pagespeed=off later.\\nDo you wish\"\n \" to enable PageSpeed now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using Pagespeed for given site\")\n data['pagespeed'] = False\n pagespeed = False\n else:\n data['pagespeed'] = True\n pagespeed = True\n else:\n data['pagespeed'] = True\n pagespeed = True\n\n if pargs.letsencrypt == \"on\":\n\n if (not pargs.experimental):\n\n if oldsitetype in ['wpsubdomain']:\n\t Log.warn(self, \"Wildcard domains are not supported in Lets Encrypt.\\nWP SUBDOMAIN site will get SSL for primary site only.\")\n\n Log.info(self, \"Letsencrypt is currently in beta phase.\"\n \" \\nDo you wish\"\n \" to enable SSl now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]:\")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.info(self, \"Not using letsencrypt for site\")\n data['letsencrypt'] = False\n letsencrypt = False\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n else:\n data['letsencrypt'] = True\n letsencrypt = True\n\n\n\n if pargs.wpredis and data['currcachetype'] != 'wpredis':\n if (not pargs.experimental):\n Log.info(self, \"Redis is experimental feature and it may not\"\n \" work with all plugins of your site.\\nYou can \"\n \"disable it by changing cache type later.\\nDo you wish\"\n \" to enable Redis now for {0}?\".format(ee_domain))\n\n # Check prompt\n check_prompt = input(\"Type \\\"y\\\" to continue [n]: \")\n if check_prompt != \"Y\" and check_prompt != \"y\":\n Log.error(self, \"Not using Redis for site\")\n data['wpredis'] = False\n data['basic'] = True\n cache = 'basic'\n\n if ((hhvm is old_hhvm) and (pagespeed is old_pagespeed) and (php7 is old_php7) and\n (stype == oldsitetype and cache == oldcachetype)):\n return 1\n\n if not data:\n Log.error(self, \"Cannot update {0}, Invalid Options\"\n .format(ee_domain))\n\n ee_auth = site_package_check(self, stype)\n data['ee_db_name'] = check_site.db_name\n data['ee_db_user'] = check_site.db_user\n data['ee_db_pass'] = check_site.db_password\n data['ee_db_host'] = check_site.db_host\n data['old_pagespeed_status'] = check_site.is_pagespeed\n\n if not pargs.letsencrypt:\n try:\n pre_run_checks(self)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.error(self, \"NGINX configuration check failed.\")\n\n try:\n sitebackup(self, data)\n except Exception as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # setup NGINX configuration, and webroot\n try:\n setupdomain(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if 'proxy' in data.keys() and data['proxy']:\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n hhvm=hhvm, pagespeed=pagespeed,ssl=True if check_site.is_ssl else False)\n Log.info(self, \"Successfully updated site\"\n \" http://{0}\".format(ee_domain))\n return 0\n\n # Update pagespeed config\n if pargs.pagespeed:\n operateOnPagespeed(self, data)\n\n if pargs.letsencrypt:\n if data['letsencrypt'] is True:\n if not os.path.isfile(\"{0}/conf/nginx/ssl.conf.disabled\"\n .format(ee_site_webroot)):\n setupLetsEncrypt(self, ee_domain)\n\n else:\n EEFileUtils.mvfile(self, \"{0}/conf/nginx/ssl.conf.disabled\"\n .format(ee_site_webroot),\n '{0}/conf/nginx/ssl.conf'\n .format(ee_site_webroot))\n\n httpsRedirect(self,ee_domain)\n Log.info(self,\"Creating Cron Job for cert auto-renewal\")\n EECron.setcron_weekly(self,'ee site update --le=renew --all 2> /dev/null'.format(ee_domain),'Renew all'\n ' letsencrypt SSL cert. Set by EasyEngine')\n\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n Log.info(self, \"Congratulations! Successfully Configured SSl for Site \"\n \" https://{0}\".format(ee_domain))\n\n if (SSL.getExpirationDays(self,ee_domain)>0):\n Log.info(self, \"Your cert will expire within \" + str(SSL.getExpirationDays(self,ee_domain)) + \" days.\")\n else:\n Log.warn(self, \"Your cert already EXPIRED ! .PLEASE renew soon . \")\n\n elif data['letsencrypt'] is False:\n if os.path.isfile(\"{0}/conf/nginx/ssl.conf\"\n .format(ee_site_webroot)):\n Log.info(self,'Setting Nginx configuration')\n EEFileUtils.mvfile(self, \"{0}/conf/nginx/ssl.conf\"\n .format(ee_site_webroot),\n '{0}/conf/nginx/ssl.conf.disabled'\n .format(ee_site_webroot))\n httpsRedirect(self,ee_domain,False)\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n #Log.info(self,\"Removing Cron Job set for cert auto-renewal\")\n #EECron.remove_cron(self,'ee site update {0} --le=renew --min_expiry_limit 30 2> \\/dev\\/null'.format(ee_domain))\n Log.info(self, \"Successfully Disabled SSl for Site \"\n \" http://{0}\".format(ee_domain))\n\n\n # Add nginx conf folder into GIT\n EEGit.add(self, [\"{0}/conf/nginx\".format(ee_site_webroot)],\n msg=\"Adding letsencrypts config of site: {0}\"\n .format(ee_domain))\n updateSiteInfo(self, ee_domain, ssl=letsencrypt)\n return 0\n\n if stype == oldsitetype and cache == oldcachetype:\n\n # Service Nginx Reload\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n hhvm=hhvm, pagespeed=pagespeed,ssl=True if check_site.is_ssl else False, php_version=check_php_version)\n\n Log.info(self, \"Successfully updated site\"\n \" http://{0}\".format(ee_domain))\n return 0\n\n #if data['ee_db_name'] and not data['wp']:\n if 'ee_db_name' in data.keys() and not data['wp']:\n try:\n data = setupdatabase(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n try:\n eedbconfig = open(\"{0}/ee-config.php\".format(ee_site_webroot),\n encoding='utf-8', mode='w')\n eedbconfig.write(\"<?php \\ndefine('DB_NAME', '{0}');\"\n \"\\ndefine('DB_USER', '{1}'); \"\n \"\\ndefine('DB_PASSWORD', '{2}');\"\n \"\\ndefine('DB_HOST', '{3}');\\n?>\"\n .format(data['ee_db_name'],\n data['ee_db_user'],\n data['ee_db_pass'],\n data['ee_db_host']))\n eedbconfig.close()\n except IOError as e:\n Log.debug(self, str(e))\n Log.debug(self, \"creating ee-config.php failed.\")\n Log.info(self, Log.FAIL + \"Update site failed. \"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # Setup WordPress if old sites are html/php/mysql sites\n if data['wp'] and oldsitetype in ['html', 'proxy', 'php', 'mysql']:\n try:\n ee_wp_creds = setupwordpress(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # Uninstall unnecessary plugins\n if oldsitetype in ['wp', 'wpsubdir', 'wpsubdomain']:\n # Setup WordPress Network if update option is multisite\n # and oldsite is WordPress single site\n if data['multisite'] and oldsitetype == 'wp':\n try:\n setupwordpressnetwork(self, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if (oldcachetype == 'w3tc' or oldcachetype == 'wpfc' and\n not (data['w3tc'] or data['wpfc'])):\n try:\n uninstallwp_plugin(self, 'w3-total-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if ((oldcachetype in ['w3tc', 'wpsc', 'basic', 'wpredis'] and\n (data['wpfc'])) or (oldsitetype == 'wp' and data['multisite'] and data['wpfc'])):\n try:\n plugin_data = '{\"log_level\":\"INFO\",\"log_filesize\":5,\"enable_purge\":1,\"enable_map\":0,\"enable_log\":0,\"enable_stamp\":0,\"purge_homepage_on_new\":1,\"purge_homepage_on_edit\":1,\"purge_homepage_on_del\":1,\"purge_archive_on_new\":1,\"purge_archive_on_edit\":0,\"purge_archive_on_del\":0,\"purge_archive_on_new_comment\":0,\"purge_archive_on_deleted_comment\":0,\"purge_page_on_mod\":1,\"purge_page_on_new_comment\":1,\"purge_page_on_deleted_comment\":1,\"cache_method\":\"enable_fastcgi\",\"purge_method\":\"get_request\",\"redis_hostname\":\"127.0.0.1\",\"redis_port\":\"6379\",\"redis_prefix\":\"nginx-cache:\"}'\n setupwp_plugin(self, 'nginx-helper', 'rt_wp_nginx_helper_options', plugin_data, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update nginx-helper settings failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n elif ((oldcachetype in ['w3tc', 'wpsc', 'basic', 'wpfc'] and\n (data['wpredis'])) or (oldsitetype == 'wp' and data['multisite'] and data['wpredis'])):\n try:\n plugin_data = '{\"log_level\":\"INFO\",\"log_filesize\":5,\"enable_purge\":1,\"enable_map\":0,\"enable_log\":0,\"enable_stamp\":0,\"purge_homepage_on_new\":1,\"purge_homepage_on_edit\":1,\"purge_homepage_on_del\":1,\"purge_archive_on_new\":1,\"purge_archive_on_edit\":0,\"purge_archive_on_del\":0,\"purge_archive_on_new_comment\":0,\"purge_archive_on_deleted_comment\":0,\"purge_page_on_mod\":1,\"purge_page_on_new_comment\":1,\"purge_page_on_deleted_comment\":1,\"cache_method\":\"enable_redis\",\"purge_method\":\"get_request\",\"redis_hostname\":\"127.0.0.1\",\"redis_port\":\"6379\",\"redis_prefix\":\"nginx-cache:\"}'\n setupwp_plugin(self, 'nginx-helper', 'rt_wp_nginx_helper_options', plugin_data, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update nginx-helper settings failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n else:\n try:\n plugin_data = '{\"log_level\":\"INFO\",\"log_filesize\":5,\"enable_purge\":0,\"enable_map\":0,\"enable_log\":0,\"enable_stamp\":0,\"purge_homepage_on_new\":1,\"purge_homepage_on_edit\":1,\"purge_homepage_on_del\":1,\"purge_archive_on_new\":1,\"purge_archive_on_edit\":0,\"purge_archive_on_del\":0,\"purge_archive_on_new_comment\":0,\"purge_archive_on_deleted_comment\":0,\"purge_page_on_mod\":1,\"purge_page_on_new_comment\":1,\"purge_page_on_deleted_comment\":1,\"cache_method\":\"enable_redis\",\"purge_method\":\"get_request\",\"redis_hostname\":\"127.0.0.1\",\"redis_port\":\"6379\",\"redis_prefix\":\"nginx-cache:\"}'\n setupwp_plugin(self, 'nginx-helper', 'rt_wp_nginx_helper_options', plugin_data, data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update nginx-helper settings failed. \"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype == 'wpsc' and not data['wpsc']:\n try:\n uninstallwp_plugin(self, 'wp-super-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype == 'wpredis' and not data['wpredis']:\n try:\n uninstallwp_plugin(self, 'redis-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if (oldcachetype != 'w3tc' or oldcachetype != 'wpfc') and (data['w3tc']\n or data['wpfc']):\n try:\n installwp_plugin(self, 'w3-total-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason\"\n \" `tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype != 'wpsc' and data['wpsc']:\n try:\n installwp_plugin(self, 'wp-super-cache', data)\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if oldcachetype != 'wpredis' and data['wpredis']:\n try:\n if installwp_plugin(self, 'redis-cache', data):\n #search for wp-config.php\n if EEFileUtils.isexist(self,\"{0}/wp-config.php\".format(ee_site_webroot)):\n config_path = '{0}/wp-config.php'.format(ee_site_webroot)\n elif EEFileUtils.isexist(self,\"{0}/htdocs/wp-config.php\".format(ee_site_webroot)):\n config_path = '{0}/htdocs/wp-config.php'.format(ee_site_webroot)\n else:\n Log.debug(self, \"Updating wp-config.php failed. File could not be located.\")\n Log.error(self,\"wp-config.php could not be located !!\")\n raise SiteError\n\n if EEShellExec.cmd_exec(self, \"grep -q \\\"WP_CACHE_KEY_SALT\\\" {0}\"\n .format(config_path)):\n pass\n else:\n try:\n wpconfig = open(\"{0}\".format(config_path),\n encoding='utf-8', mode='a')\n wpconfig.write(\"\\n\\ndefine( \\'WP_CACHE_KEY_SALT\\', \\'{0}:\\' );\"\n .format(ee_domain))\n wpconfig.close()\n except IOError as e:\n Log.debug(self, str(e))\n Log.debug(self, \"Updating wp-config.php failed.\")\n Log.warn(self, \"Updating wp-config.php failed. \"\n \"Could not append:\"\n \"\\ndefine( \\'WP_CACHE_KEY_SALT\\', \\'{0}:\\' );\".format(ee_domain) +\n \"\\nPlease add manually\")\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n # Service Nginx Reload\n if not EEService.reload_service(self, 'nginx'):\n Log.error(self, \"service nginx reload failed. \"\n \"check issues with `nginx -t` command\")\n\n EEGit.add(self, [\"/etc/nginx\"],\n msg=\"{0} updated with {1} {2}\"\n .format(ee_www_domain, stype, cache))\n # Setup Permissions for webroot\n try:\n setwebrootpermissions(self, data['webroot'])\n except SiteError as e:\n Log.debug(self, str(e))\n Log.info(self, Log.FAIL + \"Update site failed.\"\n \"Check logs for reason \"\n \"`tail /var/log/ee/ee.log` & Try Again!!!\")\n return 1\n\n if ee_auth and len(ee_auth):\n for msg in ee_auth:\n Log.info(self, Log.ENDC + msg)\n\n display_cache_settings(self, data)\n if data['wp'] and oldsitetype in ['html', 'php', 'mysql']:\n Log.info(self, \"\\n\\n\" + Log.ENDC + \"WordPress admin user :\"\n \" {0}\".format(ee_wp_creds['wp_user']))\n Log.info(self, Log.ENDC + \"WordPress admin password : {0}\"\n .format(ee_wp_creds['wp_pass']) + \"\\n\\n\")\n if oldsitetype in ['html', 'php'] and stype != 'php':\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n db_name=data['ee_db_name'],\n db_user=data['ee_db_user'],\n db_password=data['ee_db_pass'],\n db_host=data['ee_db_host'], hhvm=hhvm,\n pagespeed=pagespeed,ssl=True if check_site.is_ssl else False,php_version=check_php_version)\n else:\n updateSiteInfo(self, ee_domain, stype=stype, cache=cache,\n hhvm=hhvm, pagespeed=pagespeed,ssl=True if check_site.is_ssl else False,php_version=check_php_version)\n Log.info(self, \"Successfully updated site\"\n \" http://{0}\".format(ee_domain))\n return 0", "metadata": "root.EESiteUpdateController.doupdatesite", "header": "['class', 'EESiteUpdateController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 929 }, { "content": "class EESiteDeleteController(CementBaseController):\n class Meta:\n label = 'delete'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = 'delete an existing website'\n arguments = [\n (['site_name'],\n dict(help='domain name to be deleted', nargs='?')),\n (['--no-prompt'],\n dict(help=\"doesnt ask permission for delete\",\n action='store_true')),\n (['-f','--force'],\n dict(help=\"forcefully delete site and configuration\",\n action='store_true')),\n (['--all'],\n dict(help=\"delete all\", action='store_true')),\n (['--db'],\n dict(help=\"delete db only\", action='store_true')),\n (['--files'],\n dict(help=\"delete webroot only\", action='store_true')),\n ]\n", "metadata": "root.EESiteDeleteController", "header": "['module', '___EOS___']", "index": 1716 }, { "content": " @expose(help=\"Delete website configuration and files\")\n @expose(hide=True)\n def default(self):\n if not self.app.pargs.site_name:\n try:\n while not self.app.pargs.site_name:\n self.app.pargs.site_name = (input('Enter site name : ')\n .strip())\n except IOError as e:\n Log.error(self, 'could not input site name')\n\n self.app.pargs.site_name = self.app.pargs.site_name.strip()\n (ee_domain, ee_www_domain) = ValidateDomain(self.app.pargs.site_name)\n ee_db_name = ''\n ee_prompt = ''\n ee_nginx_prompt = ''\n mark_db_delete_prompt = False\n mark_webroot_delete_prompt = False\n mark_db_deleted = False\n mark_webroot_deleted = False\n if not check_domain_exists(self, ee_domain):\n Log.error(self, \"site {0} does not exist\".format(ee_domain))\n\n if ((not self.app.pargs.db) and (not self.app.pargs.files) and\n (not self.app.pargs.all)):\n self.app.pargs.all = True\n\n # Gather information from ee-db for ee_domain\n check_site = getSiteInfo(self, ee_domain)\n ee_site_type = check_site.site_type\n ee_site_webroot = check_site.site_path\n if ee_site_webroot == 'deleted':\n mark_webroot_deleted = True\n if ee_site_type in ['mysql', 'wp', 'wpsubdir', 'wpsubdomain']:\n ee_db_name = check_site.db_name\n ee_db_user = check_site.db_user\n ee_mysql_grant_host = self.app.config.get('mysql', 'grant-host')\n if ee_db_name == 'deleted':\n mark_db_deleted = True\n if self.app.pargs.all:\n self.app.pargs.db = True\n self.app.pargs.files = True\n else:\n if self.app.pargs.all:\n mark_db_deleted = True\n self.app.pargs.files = True\n\n # Delete website database\n if self.app.pargs.db:\n if ee_db_name != 'deleted' and ee_db_name != '':\n if not self.app.pargs.no_prompt:\n ee_db_prompt = input('Are you sure, you want to delete'\n ' database [y/N]: ')\n else:\n ee_db_prompt = 'Y'\n mark_db_delete_prompt = True\n\n if ee_db_prompt == 'Y' or ee_db_prompt == 'y':\n mark_db_delete_prompt = True\n Log.info(self, \"Deleting Database, {0}, user {1}\"\n .format(ee_db_name, ee_db_user))\n deleteDB(self, ee_db_name, ee_db_user, ee_mysql_grant_host, False)\n updateSiteInfo(self, ee_domain,\n db_name='deleted',\n db_user='deleted',\n db_password='deleted')\n mark_db_deleted = True\n Log.info(self, \"Deleted Database successfully.\")\n else:\n mark_db_deleted = True\n Log.info(self, \"Does not seems to have database for this site.\"\n )\n\n # Delete webroot\n if self.app.pargs.files:\n if ee_site_webroot != 'deleted':\n if not self.app.pargs.no_prompt:\n ee_web_prompt = input('Are you sure, you want to delete '\n 'webroot [y/N]: ')\n else:\n ee_web_prompt = 'Y'\n mark_webroot_delete_prompt = True\n\n if ee_web_prompt == 'Y' or ee_web_prompt == 'y':\n mark_webroot_delete_prompt = True\n Log.info(self, \"Deleting Webroot, {0}\"\n .format(ee_site_webroot))\n deleteWebRoot(self, ee_site_webroot)\n updateSiteInfo(self, ee_domain, webroot='deleted')\n mark_webroot_deleted = True\n Log.info(self, \"Deleted webroot successfully\")\n else:\n mark_webroot_deleted = True\n Log.info(self, \"Webroot seems to be already deleted\")\n\n if not self.app.pargs.force:\n if (mark_webroot_deleted and mark_db_deleted):\n # TODO Delete nginx conf\n removeNginxConf(self, ee_domain)\n deleteSiteInfo(self, ee_domain)\n Log.info(self, \"Deleted site {0}\".format(ee_domain))\n # else:\n # Log.error(self, \" site {0} does not exists\".format(ee_domain))\n else:\n if (mark_db_delete_prompt or mark_webroot_delete_prompt or (mark_webroot_deleted and mark_db_deleted)):\n # TODO Delete nginx conf\n removeNginxConf(self, ee_domain)\n deleteSiteInfo(self, ee_domain)\n Log.info(self, \"Deleted site {0}\".format(ee_domain))", "metadata": "root.EESiteDeleteController.default", "header": "['class', 'EESiteDeleteController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 1739 }, { "content": "class EESiteListController(CementBaseController):\n class Meta:\n label = 'list'\n stacked_on = 'site'\n stacked_type = 'nested'\n description = 'List websites'\n arguments = [\n (['--enabled'],\n dict(help='List enabled websites', action='store_true')),\n (['--disabled'],\n dict(help=\"List disabled websites\", action='store_true')),\n ]\n", "metadata": "root.EESiteListController", "header": "['module', '___EOS___']", "index": 1850 }, { "content": " @expose(help=\"Lists websites\")\n def default(self):\n sites = getAllsites(self)\n if not sites:\n pass\n\n if self.app.pargs.enabled:\n for site in sites:\n if site.is_enabled:\n Log.info(self, \"{0}\".format(site.sitename))\n elif self.app.pargs.disabled:\n for site in sites:\n if not site.is_enabled:\n Log.info(self, \"{0}\".format(site.sitename))\n else:\n for site in sites:\n Log.info(self, \"{0}\".format(site.sitename))", "metadata": "root.EESiteListController.default", "header": "['class', 'EESiteListController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 1863 }, { "content": "def load(app):\n # register the plugin class.. this only happens if the plugin is enabled\n handler.register(EESiteController)\n handler.register(EESiteCreateController)\n handler.register(EESiteUpdateController)\n handler.register(EESiteDeleteController)\n handler.register(EESiteListController)\n handler.register(EESiteEditController)\n # register a hook (function) to run after arguments are parsed.\n hook.register('post_argument_parsing', ee_site_hook)", "metadata": "root.load", "header": "['module', '___EOS___']", "index": 1882 } ]

[ { "span": "from subprocess import Popen", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 28 }, { "span": "import sys", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 10 } ]

[]

1

false

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Except block handles 'BaseException'

Esri/ops-server-config/SupportFiles/UtilitiesArcPy.py

[ { "content": "def uploadServiceDefinition(sdFilePath, agsPubConnectionFile, startService=True):\n success = True\n pymsg = \"\"\n \n try:\n if startService:\n startService = \"STARTED\"\n else:\n startService = \"STOPPED\"\n \n arcpy.UploadServiceDefinition_server(sdFilePath, agsPubConnectionFile, in_startupType=startService, in_cluster='default')\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.uploadServiceDefinition", "header": "['module', '___EOS___']", "index": 26 }, { "content": "def copyData(sourcePath, destinationPath, dataType=\"\"):\n success = True\n pymsg = \"\"\n \n try:\n if arcpy.Exists(destinationPath):\n print \"\\tWARNING: dataset already exists in destination: \" + destinationPath\n print \"\\tIf dataset is participating in a relationship, then might have been copied when parent was copied.\"\n else:\n arcpy.Copy_management(sourcePath, destinationPath)\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.copyData", "header": "['module', '___EOS___']", "index": 46 }, { "content": "def copyGDBData(sourceGDBPath, destinationGDBPath):\n success = True\n pymsg = \"\"\n printMsg = True\n debug = False\n \n try:\n #startTime = datetime.now()\n print '\\n{:<14}{:<100}'.format(\"Source:\", sourceGDBPath)\n print '{:<14}{:<100}\\n'.format(\"Destination:\", destinationGDBPath)\n \n # Verify input parameter types\n \n # Check out extensions\n print \"- Check out network license...\"\n if arcpy.CheckExtension(\"Network\") == \"Available\":\n arcpy.CheckOutExtension(\"Network\")\n else:\n # Raise a custom exception\n raise LicenseError\n \n descGDB = arcpy.Describe(sourceGDBPath)\n \n if debug:\n # Print some Describe Object properties\n if hasattr(descGDB, \"name\"):\n print \"Name: \" + descGDB.name\n if hasattr(descGDB, \"dataType\"):\n print \"DataType: \" + descGDB.dataType\n if hasattr(descGDB, \"catalogPath\"):\n print \"CatalogPath: \" + descGDB.catalogPath\n \n # Find children datasets\n datasets = []\n copyExcludeList = []\n for child in descGDB.children:\n if child.dataType != \"RelationshipClass\":\n datasets.append(child.name)\n else:\n descRel = arcpy.Describe(sourceGDBPath + \"/\" + child.name)\n for destClassName in descRel.destinationClassNames:\n copyExcludeList.append(destClassName)\n \n # Do not copy the datasets that are the destination datasets in\n # relationships since these datasets will automatically be\n # copied when the origin datasets are copied\n copyList = [dataset for dataset in datasets if dataset not in copyExcludeList]\n \n if debug:\n print \"\\nAll datasets (excluding relationship classes):\"\n print datasets\n print \"\\nDestination tables involved in relationship classes:\"\n print copyExcludeList\n print \"\\nCopy the following:\"\n print copyList\n \n if len(copyList) > 0:\n n = 1\n print \"- Copying database data...\"\n for dataset in copyList:\n srcPath = os.path.join(sourceGDBPath, dataset)\n destPath = os.path.join(destinationGDBPath, dataset)\n print \"\\tDataset: {} ({}/{})\".format(dataset, n, len(copyList))\n if arcpy.Exists(destPath):\n print \"\\t\\tWARNING: Will not copy dataset.\"\n print \"\\t\\tDataset already exists in destination: \" + destPath\n print \"\\t\\t(If dataset is participating in a relationship, then it was copied when origin dataset(s) was copied).\"\n else:\n print \"\\tCopying...\"\n results = copyData(srcPath, destPath)\n copySuccess = checkResults(results, printMsg)\n if not copySuccess:\n success = False\n n = n + 1\n else:\n print \"- No database data to copy.\"\n \n except LicenseError:\n success = False\n print \"ERROR: Network license is unavailable\"\n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n arcpy.CheckInExtension(\"Network\")\n # print '{:<14}{:%Y-%m-%d %H:%M:%S}'.format(\"Start time:\", startTime)\n # print '{:<14}{:%Y-%m-%d %H:%M:%S}'.format(\"End time:\", datetime.now())\n return [success, pymsg]", "metadata": "root.copyGDBData", "header": "['module', '___EOS___']", "index": 64 }, { "content": "def repairMosaicDatasetPaths(mosaicDatasetPath, pathsList):\n success = True\n pymsg = \"\"\n \n try:\n \n arcpy.RepairMosaicDatasetPaths_management(mosaicDatasetPath, pathsList)\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.repairMosaicDatasetPaths", "header": "['module', '___EOS___']", "index": 172 }, { "content": "def createAGSConnectionFile(agsConnFolderPath, agsConnFile, serverName,\n userName, passWord, port=6080, useSSL=False,\n connectionType=\"ADMINISTER_GIS_SERVICES\",\n serverType=\"ARCGIS_SERVER\",\n saveUserNamePassWord=\"SAVE_USERNAME\"):\n success = True\n pymsg = \"\"\n \n try:\n \n agsConnFilePath = agsConnFolderPath + os.sep + agsConnFile\n \n # Delete connection file if it already exists\n if os.path.exists(agsConnFilePath):\n os.remove(agsConnFilePath)\n \n # Build URL\n if useSSL:\n targetAGSURL = \"https\"\n else:\n targetAGSURL = \"http\"\n \n targetAGSURL = \"{}://{}\".format(targetAGSURL, serverName)\n \n if port:\n targetAGSURL = \"{}:{}\".format(targetAGSURL, port)\n \n targetAGSURL = \"{}/arcgis/admin\".format(targetAGSURL)\n \n # Create connection file\n arcpy.mapping.CreateGISServerConnectionFile(\n connectionType, agsConnFolderPath, agsConnFile,\n targetAGSURL, serverType, True, None, userName, passWord,\n saveUserNamePassWord)\n \n except:\n success = False\n pymsg = \"\\tError Info:\\n\\t\" + str(sys.exc_info()[1])\n \n finally:\n return [success, pymsg]", "metadata": "root.createAGSConnectionFile", "header": "['module', '___EOS___']", "index": 187 } ]

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[]

1

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Variable defined multiple times

sassoftware/conary/conary_test/clienttest/modelupdatetest.py

[ { "content": " @testhelp.context('sysmodel')\n def testRedirect(self):\n self.addComponent('bar:runtime=1.0', fileContents = [ '/bar:runtime'] )\n self.addCollection('bar=1.0', [ ':runtime'] )\n\n self.addComponent('redirect:runtime=1.0')\n self.addCollection('redirect=1.0', [ ':runtime'] )\n\n self.addComponent('foo:runtime=1.0', fileContents = [ '/foo:runtime'] )\n self.addCollection('foo=1.0', [ ':runtime' ])\n\n redirectRecipe = \"\\n\".join([\n 'class testRedirect(RedirectRecipe):',\n ' name = \"redirect\"',\n ' version = \"2.0\"',\n ' clearBuildReqs()',\n '',\n ' def setup(r):',\n ' r.addRedirect(\"foo\", \"localhost@rpl:linux\")' ])\n\n built, d = self.buildRecipe(redirectRecipe, \"testRedirect\")\n\n self._applyModel([ 'install redirect=2.0' ])\n self.verifyFile(self.rootDir + '/foo:runtime')\n\n redirectRecipe = \"\\n\".join([\n 'class testRedirect(RedirectRecipe):',\n ' name = \"foo\"',\n ' version = \"2.0\"',\n ' clearBuildReqs()',\n '',\n ' def setup(r):',\n ' r.addRedirect(\"bar\", \"localhost@rpl:linux\")' ])\n\n built, d = self.buildRecipe(redirectRecipe, \"testRedirect\")\n self._applyModel([ 'install redirect=2.0' ])\n self.verifyFile(self.rootDir + '/bar:runtime')\n\n redirectRecipe = \"\\n\".join([\n 'class testRedirect(RedirectRecipe):',\n ' name = \"bar\"',\n ' version = \"2.0\"',\n ' clearBuildReqs()',\n '',\n ' def setup(r):',\n ' r.addRedirect(\"redirect\",\"localhost@rpl:linux\")' ])\n built, d = self.buildRecipe(redirectRecipe, \"testRedirect\")\n\n self.assertRaisesRegexp(conaryclient.UpdateError,\n '^Redirect loop found which includes troves redirect, foo$',\n self._applyModel, [ 'install redirect=2.0' ])", "metadata": "root.ModelUpdateTest.testRedirect", "header": "['class', 'ModelUpdateTest', '(', 'rephelp', '.', 'RepositoryHelper', ')', ':', '___EOS___']", "index": 478 } ]

[ { "span": "built,", "start_line": 498, "start_column": 8, "end_line": 498, "end_column": 13 }, { "span": "d ", "start_line": 498, "start_column": 15, "end_line": 498, "end_column": 16 }, { "span": "built,", "start_line": 512, "start_column": 8, "end_line": 512, "end_column": 13 }, { "span": "d ", "start_line": 512, "start_column": 15, "end_line": 512, "end_column": 16 } ]

[ { "span": "built,", "start_line": 524, "start_column": 8, "end_line": 524, "end_column": 13 } ]

1

true

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An assert statement has a side-effect

ResilientScience/wot/tests/sequitur_tests.py

[ { "content": "def test_input3():\n assert sequitur.run(open(\"tests/data/69k\").read()) == open(\"tests/data/69k.out\").read()", "metadata": "root.test_input3", "header": "['module', '___EOS___']", "index": 24 } ]

[ { "span": "assert sequitur.run(open(\"tests/data/69k\").read()) == open(\"tests/data/69k.out\").read()", "start_line": 25, "start_column": 4, "end_line": 25, "end_column": 91 } ]

[]

1

true

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Unused import

karlnapf/kameleon-mcmc/kameleon_mcmc/kernel/PolynomialKernel.py

[ { "content": "\"\"\"\nThis program is free software; you can redistribute it and/or modify\nit under the terms of the GNU General Public License as published by\nthe Free Software Foundation; either version 3 of the License, or\n(at your option) any later version.\n\nWritten (W) 2013 Heiko Strathmann\nWritten (W) 2013 Dino Sejdinovic\n\"\"\"\n\nfrom numpy import array\n\nfrom kameleon_mcmc.kernel.Kernel import Kernel\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class PolynomialKernel(Kernel):\n \n \n ", "metadata": "root.PolynomialKernel", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def __init__(self, degree,theta=0.2):\n Kernel.__init__(self)\n self.degree = degree\n self.theta = theta", "metadata": "root.PolynomialKernel.__init__", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 16 }, { "content": " def __str__(self):\n s=self.__class__.__name__+ \"=[\"\n s += \"degree=\"+ str(self.degree)\n s += \", \" + Kernel.__str__(self)\n s += \"]\"\n return s", "metadata": "root.PolynomialKernel.__str__", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 21 }, { "content": " def kernel(self, X, Y=None):\n \"\"\"\n Computes the polynomial kernel k(x,y)=(1+theta*<x,y>)^degree for the given data\n X - samples on right hand side\n Y - samples on left hand side, can be None in which case its replaced by X\n \"\"\"\n if Y is None:\n Y = X\n \n return pow(self.theta+X.dot(Y.T), self.degree)", "metadata": "root.PolynomialKernel.kernel", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 28 }, { "content": " def gradient(self, x, Y):\n \"\"\"\n Computes the gradient of the Polynomial kernel wrt. to the left argument, i.e.\n \\nabla_x k(x,y)=\\nabla_x (1+x^Ty)^d=d(1+x^Ty)^(d-1) y\n \n x - single sample on right hand side (1D vector)\n Y - samples on left hand side (2D matrix)\n \"\"\"\n assert(len(x.shape)==1)\n assert(len(Y.shape)==2)\n assert(len(x)==Y.shape[1])\n \n return self.degree*pow(1+x.dot(Y.T), self.degree)*Y", "metadata": "root.PolynomialKernel.gradient", "header": "['class', 'PolynomialKernel', '(', 'Kernel', ')', ':', '___EOS___']", "index": 39 } ]

[ { "span": "from numpy import array", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 23 } ]

[]

1

false

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Variable defined multiple times

mahmoud/boltons/tests/test_gcutils.py

[ { "content": " def test_toggle_gc_postcollect():\n COUNT = int(1e6)\n\n start = time.time()\n with toggle_gc_postcollect:\n x = [{} for x in range(COUNT)]\n no_gc_time = time.time() - start\n\n start = time.time()\n x = [{} for x in range(COUNT)]\n with_gc_time = time.time() - start\n\n time_diff = no_gc_time < with_gc_time", "metadata": "root.test_toggle_gc_postcollect", "header": "['module', '___EOS___']", "index": 21 } ]

[ { "span": "x ", "start_line": 26, "start_column": 12, "end_line": 26, "end_column": 13 } ]

[]

1

true

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Unused import

lambdalisue/django-permission/src/permission/templatetags/patch.py

[ { "content": "# vim: set fileencoding=utf-8 :\n\"\"\"\ndjango if templatetag patch\n\"\"\"\nimport django\n\n\nif django.VERSION < (1, 4):\n from django.template import Node\n from django.template import NodeList\n from django.template import VariableDoesNotExist\n from django.template import TemplateSyntaxError\n try:\n from django.template.base import TextNode\n except ImportError:\n from django.template import TextNode\n # copied from django 1.4b\n # copied from django 1.4b\nelse:\n from django.template.defaulttags import IfNode\n parser_patch = lambda instance: instance\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " class IfNode(Node):", "metadata": "root.IfNode", "header": "['module', '___EOS___']", "index": 17 }, { "content": " def __init__(self, conditions_nodelists):\n self.conditions_nodelists = conditions_nodelists", "metadata": "root.IfNode.__init__", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 18 }, { "content": " def __repr__(self):\n return \"<IfNode>\"", "metadata": "root.IfNode.__repr__", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 20 }, { "content": " def __iter__(self):\n for _, nodelist in self.conditions_nodelists:\n for node in nodelist:\n yield node", "metadata": "root.IfNode.__iter__", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 22 }, { "content": " @property\n def nodelist(self):\n return NodeList(node for _, nodelist in self.conditions_nodelists for node in nodelist)", "metadata": "root.IfNode.nodelist", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 26 }, { "content": " def render(self, context):\n for condition, nodelist in self.conditions_nodelists:\n if condition is not None: # if / elif clause\n try:\n match = condition.eval(context)\n except VariableDoesNotExist:\n match = None\n else: # else clause\n match = True\n if match:\n return nodelist.render(context)\n return ''", "metadata": "root.IfNode.render", "header": "['class', 'IfNode', '(', 'Node', ')', ':', '___EOS___']", "index": 29 }, { "content": " def parse(self, parse_until=None):\n if parse_until is None:\n parse_until = []\n nodelist = self.create_nodelist()\n while self.tokens:\n token = self.next_token()\n # Use the raw values here for TOKEN_* for a tiny performance boost.\n if token.token_type == 0: # TOKEN_TEXT\n self.extend_nodelist(nodelist, TextNode(token.contents), token)\n elif token.token_type == 1: # TOKEN_VAR\n if not token.contents:\n self.empty_variable(token)\n filter_expression = self.compile_filter(token.contents)\n var_node = self.create_variable_node(filter_expression)\n self.extend_nodelist(nodelist, var_node, token)\n elif token.token_type == 2: # TOKEN_BLOCK\n try:\n command = token.contents.split()[0]\n except IndexError:\n self.empty_block_tag(token)\n if command in parse_until:\n # put token back on token list so calling\n # code knows why it terminated\n self.prepend_token(token)\n return nodelist\n # execute callback function for this tag and append\n # resulting node\n self.enter_command(command, token)\n try:\n compile_func = self.tags[command]\n except KeyError:\n self.invalid_block_tag(token, command, parse_until)\n try:\n compiled_result = compile_func(self, token)\n except TemplateSyntaxError as e:\n if not self.compile_function_error(token, e):\n raise\n self.extend_nodelist(nodelist, compiled_result, token)\n self.exit_command()\n if parse_until:\n self.unclosed_block_tag(parse_until)\n return nodelist", "metadata": "root.parse", "header": "['module', '___EOS___']", "index": 42 }, { "content": " def parser_patch(instance):\n instance.__class__.parse = parse\n return instance", "metadata": "root.parser_patch", "header": "['module', '___EOS___']", "index": 84 } ]

[ { "span": "from django.template.defaulttags import IfNode", "start_line": 88, "start_column": 4, "end_line": 88, "end_column": 50 } ]

[]

1

false

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Unused import

oleiade/etcaetera/etcaetera/adapter/file.py

[ { "content": "import os\nimport imp\n\nfrom etcaetera.adapter.base import Adapter\nfrom etcaetera.utils import format_key\nfrom etcaetera.constants import (\n JSON_EXTENSIONS,\n YAML_EXTENSIONS,\n PYTHON_EXTENSIONS\n)\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class File(Adapter):\n\n", "metadata": "root.File", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def __init__(self, filepath, *args, **kwargs):\n self.filepath = filepath\n\n # If strict parameter (inherited from parent) is True,\n # strictness_check routine will be called\n super(File, self).__init__(*args, **kwargs)", "metadata": "root.File.__init__", "header": "['class', 'File', '(', 'Adapter', ')', ':', '___EOS___']", "index": 13 }, { "content": " def strictness_check(self):\n if not os.path.exists(self.filepath):\n raise IOError(\"Path {0} does not exist\".format(self.filepath))", "metadata": "root.File.strictness_check", "header": "['class', 'File', '(', 'Adapter', ')', ':', '___EOS___']", "index": 20 }, { "content": " def load(self, formatter=None):\n try:\n fd = open(self.filepath, 'r')\n except IOError:\n if self.strict is True:\n raise\n else:\n return\n\n _, file_extension = os.path.splitext(self.filepath)\n\n if file_extension.lower() in JSON_EXTENSIONS:\n import json\n self.data = dict((self.format(k, formatter), v) for k, v in json.load(fd).items())\n elif file_extension.lower() in YAML_EXTENSIONS:\n from yaml import load as yload, dump as ydump\n try:\n from yaml import CLoader as Loader\n except ImportError:\n from yaml import Loader\n self.data = dict((self.format(k, formatter), v) for k, v in yload(fd, Loader=Loader).items())\n elif file_extension.lower() in PYTHON_EXTENSIONS:\n mod = imp.load_source('mod', self.filepath)\n self.data = dict((self.format(k, formatter), v) for k, v in vars(mod).items() if k.isupper())\n else:\n raise ValueError(\"Unhandled file extension {0}\".format(file_extension))\n\n fd.close()", "metadata": "root.File.load", "header": "['class', 'File', '(', 'Adapter', ')', ':', '___EOS___']", "index": 24 } ]

[ { "span": "from etcaetera.utils import format_key", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 38 } ]

[]

1

false

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Unused import

dimagi/commcare-hq/corehq/form_processor/migrations/0041_noop_specify_table_names.py

[ { "content": "# -*- coding: utf-8 -*-\nfrom __future__ import unicode_literals\n\nfrom django.db import models, migrations\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Migration(migrations.Migration):\n\n dependencies = [\n ('form_processor', '0040_save_functions'),\n ]\n\n operations = [\n migrations.AlterModelTable(\n name='caseattachmentsql',\n table='form_processor_caseattachmentsql',\n ),\n migrations.AlterModelTable(\n name='casetransaction',\n table='form_processor_casetransaction',\n ),\n migrations.AlterModelTable(\n name='commcarecaseindexsql',\n table='form_processor_commcarecaseindexsql',\n ),\n migrations.AlterModelTable(\n name='commcarecasesql',\n table='form_processor_commcarecasesql',\n ),\n migrations.AlterModelTable(\n name='xformattachmentsql',\n table='form_processor_xformattachmentsql',\n ),\n migrations.AlterModelTable(\n name='xforminstancesql',\n table='form_processor_xforminstancesql',\n ),\n migrations.AlterModelTable(\n name='xformoperationsql',\n table='form_processor_xformoperationsql',\n ),\n ]", "metadata": "root.Migration", "header": "['module', '___EOS___']", "index": 6 } ]

[ { "span": "from django.db import models, migrations", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 40 } ]

[]

1

false

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Unused import

crossbario/autobahn-python/examples/twisted/websocket/echo_multicore/server.py

[ { "content": "###############################################################################\n#\n# The MIT License (MIT)\n#\n# Copyright (c) Tavendo GmbH\n#\n# Permission is hereby granted, free of charge, to any person obtaining a copy\n# of this software and associated documentation files (the \"Software\"), to deal\n# in the Software without restriction, including without limitation the rights\n# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell\n# copies of the Software, and to permit persons to whom the Software is\n# furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included in\n# all copies or substantial portions of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\n# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\n# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\n# THE SOFTWARE.\n#\n###############################################################################\n\nimport sys\nimport os\nimport pkg_resources\nimport StringIO\nfrom sys import argv, executable\nfrom socket import AF_INET\n\n# make sure we run a capable OS/reactor\n##\nstartupMsgs = []\nif 'bsd' in sys.platform:\n from twisted.internet import kqreactor\n kqreactor.install()\n startupMsgs.append(\"Alrighty: you run a capable kqueue platform - good job!\")\nelif sys.platform.startswith('linux'):\n from twisted.internet import epollreactor\n epollreactor.install()\n startupMsgs.append(\"Alrighty: you run a capable epoll platform - good job!\")\nelif sys.platform.startswith('darwin'):\n from twisted.internet import kqreactor\n kqreactor.install()\n startupMsgs.append(\"Huh, you run OSX and have kqueue, but don't be disappointed when performance sucks;)\")\nelif sys.platform == 'win32':\n raise Exception(\"Sorry dude, Twisted/Windows select/iocp reactors lack the necessary bits.\")\nelse:\n raise Exception(\"Hey man, what OS are you using?\")\n\nfrom twisted.internet import reactor\n\nstartupMsgs.append(\"Using Twisted reactor class %s on Twisted %s\" % (str(reactor.__class__), pkg_resources.require(\"Twisted\")[0].version))\n\n\nfrom twisted.internet import reactor\nfrom twisted.python import log\nfrom twisted.internet import reactor\nfrom twisted.internet.protocol import Factory\nfrom twisted.web.server import Site\nfrom twisted.web.static import File\n\nfrom autobahn.websocket.util import parse_url\n\nfrom autobahn.twisted.websocket import WebSocketServerFactory, \\\n WebSocketServerProtocol\n\nfrom autobahn.util import Stopwatch\n\n\nhasStatprof = False\ntry:\n import statprof\n startupMsgs.append(\"statprof found! you may enable statistical profiling\")\n hasStatprof = True\nexcept ImportError:\n startupMsgs.append(\"statprof not installed - no profiling available\")\n\n\n\n\n\n\n\n\n# export PYPYLOG=\"jit-log-opt,jit-backend:pypy.log\"\n\n# Run under \"perf\" and enable PyPy JIT logging\n##\n# Notes:\n##\n# - setting an env var (outside root) will NOT work (not propagated)\n# - setting in code also will NOT work\n##\n# sudo PYPYLOG=\"jit-log-opt,jit-backend:pypy.log\" perf record ~/pypy-20131102/bin/pypy server.py --workers 4\n\n\n\n\nPROFILER_FREQ = 2000\n\n\n\n# /usr/include/valgrind/valgrind.h\n# valgrind --tool=callgrind python server.py --wsuri ws://127.0.0.1:9000\n\n# http://valgrind.org/docs/manual/cg-manual.html\n# http://valgrind.org/docs/manual/cl-manual.html\n\n# https://bitbucket.org/pypy/jitviewer\n# http://morepypy.blogspot.de/2011/08/visualization-of-jitted-code.html\n# http://people.cs.uct.ac.za/~tmullins/work/writeup.pdf\n\n# list(range(psutil.NUM_CPUS))\n# p.get_cpu_affinity()\n\n# p.set_cpu_affinity([0])\n# p.set_nice(psutil.HIGH_PRIORITY_CLASS)\n\n\nif __name__ == '__main__':\n\n import argparse\n import psutil\n\n DEFAULT_WORKERS = psutil.cpu_count()\n\n parser = argparse.ArgumentParser(description='Autobahn WebSocket Echo Multicore Server')\n parser.add_argument('--wsuri', dest='wsuri', type=str, default=u'ws://127.0.0.1:9000', help='The WebSocket URI the server is listening on, e.g. ws://localhost:9000.')\n parser.add_argument('--port', dest='port', type=int, default=8080, help='Port to listen on for embedded Web server. Set to 0 to disable.')\n parser.add_argument('--workers', dest='workers', type=int, default=DEFAULT_WORKERS, help='Number of workers to spawn - should fit the number of (physical) CPU cores.')\n parser.add_argument('--noaffinity', dest='noaffinity', action=\"store_true\", default=False, help='Do not set worker/CPU affinity.')\n parser.add_argument('--backlog', dest='backlog', type=int, default=8192, help='TCP accept queue depth. You must tune your OS also as this is just advisory!')\n parser.add_argument('--silence', dest='silence', action=\"store_true\", default=False, help='Silence log output.')\n parser.add_argument('--debug', dest='debug', action=\"store_true\", default=False, help='Enable WebSocket debug output.')\n parser.add_argument('--interval', dest='interval', type=int, default=5, help='Worker stats update interval.')\n parser.add_argument('--profile', dest='profile', action=\"store_true\", default=False, help='Enable profiling.')\n\n parser.add_argument('--fd', dest='fd', type=int, default=None, help='If given, this is a worker which will use provided FD and all other options are ignored.')\n parser.add_argument('--cpuid', dest='cpuid', type=int, default=None, help='If given, this is a worker which will use provided CPU core to set its affinity.')\n\n options = parser.parse_args()\n\n if options.profile and not hasStatprof:\n raise Exception(\"profiling requested, but statprof not installed\")\n\n # parse WS URI into components and forward via options\n # FIXME: add TLS support\n isSecure, host, wsport, resource, path, params = parse_url(options.wsuri)\n options.wsport = wsport\n\n # if not options.silence:\n # log.startLogging(sys.stdout)\n\n if options.fd is not None:\n # run worker\n worker(options)\n else:\n if not options.silence:\n for m in startupMsgs:\n print m\n # run master\n master(options)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Stats:\n\n\n\n\n\n\n", "metadata": "root.Stats", "header": "['module', '___EOS___']", "index": 82 }, { "content": " def __init__(self):\n # stats period\n self.period = 0\n\n # currently connected client\n self.clients = 0\n\n # total (running) stats\n self.tMsgs = 0\n self.tOctets = 0\n self.tHandshakes = 0\n self.tOctetsWireIn = 0\n self.tOctetsWireOut = 0\n\n self.stopwatch = Stopwatch(start=False)\n\n # period stats\n self._advance()", "metadata": "root.Stats.__init__", "header": "['class', 'Stats', ':', '___EOS___']", "index": 84 }, { "content": " def _advance(self):\n self.period += 1\n self.pMsgs = 0\n self.pOctets = 0\n self.pHandshakes = 0\n self.pOctetsWireIn = 0\n self.pOctetsWireOut = 0\n self.stopwatch.resume()", "metadata": "root.Stats._advance", "header": "['class', 'Stats', ':', '___EOS___']", "index": 103 }, { "content": " def trackHandshake(self):\n self.tHandshakes += 1\n self.pHandshakes += 1", "metadata": "root.Stats.trackHandshake", "header": "['class', 'Stats', ':', '___EOS___']", "index": 112 }, { "content": " def trackMsg(self, length):\n self.tMsgs += 1\n self.pMsgs += 1\n self.tOctets += length\n self.pOctets += length", "metadata": "root.Stats.trackMsg", "header": "['class', 'Stats', ':', '___EOS___']", "index": 116 }, { "content": " def trackOctetsWireIn(self, count):\n self.tOctetsWireIn += count\n self.pOctetsWireIn += count", "metadata": "root.Stats.trackOctetsWireIn", "header": "['class', 'Stats', ':', '___EOS___']", "index": 122 }, { "content": " def trackOctetsWireOut(self, count):\n self.tOctetsWireOut += count\n self.pOctetsWireOut += count", "metadata": "root.Stats.trackOctetsWireOut", "header": "['class', 'Stats', ':', '___EOS___']", "index": 126 }, { "content": " def stats(self, advance=True):\n elapsed = self.stopwatch.stop()\n\n s = (\"Period No. : %d\\n\" +\n \"Period duration : %.3f s\\n\" +\n \"Connected clients : %d\\n\" +\n \"\\n\" +\n\n \"Period\\n\" +\n \" Handshakes : %20d # %20d #/s\\n\" +\n \" Echo'ed msgs : %20d # %20d #/s\\n\" +\n \" Echo'ed octets : %20d B %20d B/s\\n\" +\n \" Wire octets in : %20d B %20d B/s\\n\" +\n \" Wire octets out : %20d B %20d B/s\\n\" +\n \"\\n\" +\n\n \"Total\\n\" +\n \" Handshakes : %20d #\\n\" +\n \" Echo'ed msgs : %20d #\\n\" +\n \" Echo'ed octets : %20d B\\n\" +\n \" Wire octets in : %20d B\\n\" +\n \" Wire octets out : %20d B\\n\" +\n\n \"\"\n ) % (self.period,\n round(elapsed, 3),\n self.clients,\n\n self.pHandshakes,\n round(float(self.pHandshakes) / elapsed),\n\n self.pMsgs,\n round(float(self.pMsgs) / elapsed),\n\n self.pOctets,\n round(float(self.pOctets) / elapsed),\n\n self.pOctetsWireIn,\n round(float(self.pOctetsWireIn) / elapsed),\n\n self.pOctetsWireOut,\n round(float(self.pOctetsWireOut) / elapsed),\n\n self.tHandshakes,\n self.tMsgs,\n self.tOctets,\n self.tOctetsWireIn,\n self.tOctetsWireOut,\n )\n self._advance()\n return s", "metadata": "root.Stats.stats", "header": "['class', 'Stats', ':', '___EOS___']", "index": 130 }, { "content": "class EchoServerProtocol(WebSocketServerProtocol):\n\n\n\n", "metadata": "root.EchoServerProtocol", "header": "['module', '___EOS___']", "index": 183 }, { "content": " def onOpen(self):\n self.factory.stats.clients += 1\n self.factory.stats.trackHandshake()", "metadata": "root.EchoServerProtocol.onOpen", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 185 }, { "content": " def onMessage(self, msg, binary):\n self.sendMessage(msg, binary)\n self.factory.stats.trackMsg(len(msg))", "metadata": "root.EchoServerProtocol.onMessage", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 189 }, { "content": " def onClose(self, wasClean, code, reason):\n self.factory.stats.clients -= 1", "metadata": "root.EchoServerProtocol.onClose", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 193 }, { "content": " def connectionLost(self, reason):\n WebSocketServerProtocol.connectionLost(self, reason)\n\n self.factory.stats.trackOctetsWireIn(self.trafficStats.preopenIncomingOctetsWireLevel +\n self.trafficStats.incomingOctetsWireLevel)\n\n self.factory.stats.trackOctetsWireOut(self.trafficStats.preopenOutgoingOctetsWireLevel +\n self.trafficStats.outgoingOctetsWireLevel)", "metadata": "root.EchoServerProtocol.connectionLost", "header": "['class', 'EchoServerProtocol', '(', 'WebSocketServerProtocol', ')', ':', '___EOS___']", "index": 196 }, { "content": "class EchoServerFactory(WebSocketServerFactory):\n\n protocol = EchoServerProtocol\n", "metadata": "root.EchoServerFactory", "header": "['module', '___EOS___']", "index": 206 }, { "content": " def __init__(self, wsuri):\n WebSocketServerFactory.__init__(self, wsuri)\n self.stats = Stats()", "metadata": "root.EchoServerFactory.__init__", "header": "['class', 'EchoServerFactory', '(', 'WebSocketServerFactory', ')', ':', '___EOS___']", "index": 210 }, { "content": "def master(options):\n \"\"\"\n Start of the master process.\n \"\"\"\n if not options.silence:\n print \"Master started on PID %s\" % os.getpid()\n\n # start embedded Web server if asked for (this only runs on master)\n ##\n if options.port:\n webdir = File(\".\")\n web = Site(webdir)\n web.log = lambda _: None # disable annoyingly verbose request logging\n reactor.listenTCP(options.port, web)\n\n # we just need some factory like thing .. it won't be used on master anyway\n # for actual socket accept\n ##\n factory = Factory()\n\n # create socket, bind and listen ..\n port = reactor.listenTCP(options.wsport, factory, backlog=options.backlog)\n\n # .. but immediately stop reading: we only want to accept on workers, not master\n port.stopReading()\n\n # fire off background workers\n ##\n for i in range(options.workers):\n\n args = [executable, \"-u\", __file__, \"--fd\", str(port.fileno()), \"--cpuid\", str(i)]\n\n # pass on cmd line args to worker ..\n args.extend(sys.argv[1:])\n\n reactor.spawnProcess(\n None, executable, args,\n childFDs={0: 0, 1: 1, 2: 2, port.fileno(): port.fileno()},\n env=os.environ)\n\n reactor.run()", "metadata": "root.master", "header": "['module', '___EOS___']", "index": 227 }, { "content": "def worker(options):\n \"\"\"\n Start background worker process.\n \"\"\"\n workerPid = os.getpid()\n\n if not options.noaffinity:\n p = psutil.Process(workerPid)\n print \"affinity [before]\", p.cpu_affinity()\n p.cpu_affinity([options.cpuid])\n print \"affinity [after]\", p.cpu_affinity()\n\n factory = EchoServerFactory(options.wsuri)\n\n # The master already created the socket, just start listening and accepting\n ##\n reactor.adoptStreamPort(options.fd, AF_INET, factory)\n\n if not options.silence:\n print \"Worker started on PID %s using factory %s and protocol %s\" % (workerPid, factory, factory.protocol)\n # print \"Worker %d PYPYLOG=%s\" % (workerPid, os.environ.get('PYPYLOG', None))\n\n if options.profile:\n statprof.reset(PROFILER_FREQ)\n statprof.start()\n\n if not options.silence:\n def stat():\n if options.profile:\n statprof.stop()\n\n output = StringIO.StringIO()\n output.write(\"-\" * 80 + \"\\n\")\n output.write(\"Worker Statistics (PID %s)\\n\\n%s\" % (workerPid, factory.stats.stats()))\n\n if options.profile:\n output.write(\"\\n\")\n # format = statprof.DisplayFormats.ByLine\n # format = statprof.DisplayFormats.ByMethod\n # statprof.display(output, format = format)\n statprof.display(output)\n\n output.write(\"-\" * 80 + \"\\n\\n\")\n\n sys.stdout.write(output.getvalue())\n\n if options.profile:\n statprof.reset(PROFILER_FREQ)\n statprof.start()\n\n reactor.callLater(options.interval, stat)\n\n reactor.callLater(options.interval, stat)\n\n if False:\n import cProfile\n print \"RUNNING cProfile\"\n cProfile.run('reactor.run()')\n else:\n reactor.run()", "metadata": "root.worker", "header": "['module', '___EOS___']", "index": 273 } ]

[ { "span": "from sys import argv, executable", "start_line": 30, "start_column": 0, "end_line": 30, "end_column": 32 }, { "span": "from twisted.python import log", "start_line": 59, "start_column": 0, "end_line": 59, "end_column": 30 } ]

[]

1

false

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Except block handles 'BaseException'

goFrendiAsgard/kokoropy/kokoropy/packages/alembic/operations.py

[ { "content": "from contextlib import contextmanager\n\nfrom sqlalchemy.types import NULLTYPE, Integer\nfrom sqlalchemy import schema as sa_schema\n\nfrom . import util\nfrom .compat import string_types\nfrom .ddl import impl\n\n__all__ = ('Operations',)\n\ntry:\n from sqlalchemy.sql.naming import conv\nexcept:\n conv = None\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "except:", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 7 } ]

[]

1

true

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Except block handles 'BaseException'

CountZer0/PipelineConstructionSet/python/maya/core/mayaCore.py

[ { "content": " def listcP(self, nodeWplug, quiet=0, all=0): #@ReservedAssignment\n \"\"\"\n SYNOPSIS\n Simple wrapper for listConnetions w/ plug\n\n INPUTS\n (PyNode.attr) mtNodeWPlug: The metaNode.plug to look at connections.\n (bool)\t\t\t\tquiet:\t 1 = suppress warning\n (bool) \t\t\t all:\t Return all connections\n\n RETURNS: (PyNode) connected node via plug\n \"\"\"\n try:\n if listConnections(nodeWplug):\n allConnections = listConnections(nodeWplug)\n if all:\n return map(lambda x: PyNode(x), allConnections)\n return PyNode(allConnections[0])\n except:\n if not quiet:\n self.logger.warning(\"Nothing connected to '%s'\" % nodeWplug)\n return 0", "metadata": "root.MayaMiscCore.listcP", "header": "['class', 'MayaMiscCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################################', '___NL___', '##\\tGeneric methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################################', '___NL___', '___EOS___']", "index": 693 }, { "content": " @staticmethod\n def removeNameSpace(ns, nuke=0):\n\n # parse ns\n parentNS, childNS = ns.split(':')\n\n # create new children NS\n if childNS not in namespaceInfo(lon=1):\n Namespace.create(childNS)\n\n namespace(set=':') #@UndefinedVariable\n if nuke:\n childNS = ':'\n namespace(mv=(ns, childNS), f=1) #@UndefinedVariable\n\n # delete it\n Namespace(ns).remove()\n\n try:\n # try to remove parent if it is not part of another child namespace\n nss = listNamespaces(recursive=True, internal=False)\n if not [ns for ns in nss if re.search('%s:' % parentNS, ns)]:\n Namespace(parentNS).clean()\n Namespace(parentNS).remove()\n except:\n pass # still stuff in it", "metadata": "root.MayaNamespaceCore.removeNameSpace", "header": "['class', 'MayaNamespaceCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################################', '___NL___', '##\\tNamespace methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################################', '___NL___', '___EOS___']", "index": 1038 }, { "content": " def lockVisibleAttrs(self, node):\n \"\"\"\n SYNOPSIS\n Locks all keyable attributes on the input node.\n\n INPUTS\n (string) node: The node to lock keyable attributes on.\n\n RETURNS: Nothing.\n \"\"\"\n\n if not len(ls(node)):\n self.logger.error(\"lockVisibleAttrs: input node does not exist '%s'.\\n\" % node)\n node = self.convertToPyNode(node)\n\n keyableAttrs = node.listAttr(k=1)\n if keyableAttrs:\n for kAttr in keyableAttrs:\n try:\n kAttr.lock()\n except:\n pass", "metadata": "root.MayaVisibilityCore.lockVisibleAttrs", "header": "['class', 'MayaVisibilityCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################', '___NL___', '##\\tVisibility methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################', '___NL___', '___EOS___']", "index": 1372 }, { "content": " def unlockVisibleAttrs(self, node):\n \"\"\"\n SYNOPSIS\n Locks all keyable attributes on the input node.\n\n INPUTS\n (string) node: The node to lock keyable attributes on.\n\n RETURNS: Nothing.\n \"\"\"\n node = self.convertToPyNode(node)\n\n keyableAttrs = node.listAttr(k=1)\n if keyableAttrs:\n for kAttr in keyableAttrs:\n try:\n kAttr.unlock()\n except:\n pass", "metadata": "root.MayaVisibilityCore.unlockVisibleAttrs", "header": "['class', 'MayaVisibilityCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################', '___NL___', '##\\tVisibility methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################', '___NL___', '___EOS___']", "index": 1395 }, { "content": " def checkHier4Mesh(self, metaRoot):\n \"\"\"\n NAME: checkHier4Mesh\n\n SYNOPSIS\n Check main hierarchy to see if any joint has a 'mesh' (poly)\n shape node parented to it. This will break the granny exporter\n\n INPUTS\n (string) \tmetaRoot:\tmetaRoot PyNode\n\n RETURNS: (list) [result, [offending]]\n \"\"\"\n\n offending = []\n result = [0, 0]\n\n if objExists(metaRoot):\n metaRoot = self.convertToPyNode(metaRoot)\n rootJoint = self.listcP(metaRoot.rootJoint)\n if rootJoint:\n for child in rootJoint.getChildren(ad=1):\n try:\n if objectType(child) == 'mesh':\n if child.getParent().attr('type').get() == 5: #ball joints\n offending.append(child)\n except:\n pass # pymel erros on checking objectType of effectors?\n\n if offending:\n result = [1, offending]\n select(offending, r=1)\n\n return result", "metadata": "root.MayaMeshCore.checkHier4Mesh", "header": "['class', 'MayaMeshCore', '(', 'Maya', ')', ':', '___NEWLINE___', '##################################################################################################################################', '___NL___', '##\\tMesh methods\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t\\t##', '___NL___', '##################################################################################################################################', '___NL___', '___EOS___']", "index": 1426 } ]

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[]

1

true

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

Module is imported with 'import' and 'import from'

lobocv/pyperform/examples/imports.py

[ { "content": "@ComparisonBenchmark('imports', timeit_repeat=10)\ndef import_top_level():\n import os\n import datetime\n import collections\n import json", "metadata": "root.import_top_level", "header": "['module', '___EOS___']", "index": 6 } ]

[ { "span": "import os", "start_line": 8, "start_column": 4, "end_line": 8, "end_column": 13 }, { "span": "import datetime", "start_line": 9, "start_column": 4, "end_line": 9, "end_column": 19 }, { "span": "import collections", "start_line": 10, "start_column": 4, "end_line": 10, "end_column": 22 }, { "span": "import json", "start_line": 11, "start_column": 4, "end_line": 11, "end_column": 15 } ]

[]

1

true

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Implicit string concatenation in a list

rizar/attention-lvcsr/libs/Theano/theano/sandbox/gpuarray/nnet.py

[ { "content": " def gpu_kernels(self, node, nodename):\n dtype_x = node.inputs[0].dtype\n dtype_sm = node.outputs[0].dtype\n load_x = load_w(dtype_x)\n write_sm = write_w(node.outputs[0].dtype)\n work_sm = work_dtype(dtype_sm)\n flags = Kernel.get_flags(dtype_x, dtype_sm)\n type_x = gpuarray.dtype_to_ctype(dtype_x)\n type_sm = gpuarray.dtype_to_ctype(dtype_sm)\n type_acc = gpuarray.dtype_to_ctype(work_sm)\n params = [\n 'uintp', 'uintp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp'\n ]\n kernels = []\n kname = \"kSoftmax\"\n k_var = \"kSoftmax_\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"%s * buf2 = buf + N\" % type_acc,\n \"x = (const %s *)(((char *)x)+offset_x)\" % type_x,\n \"sm = (%s *)(((char *)sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n \"buf[tx] = %s(x[blockIDX * sx0 + tx * sx1])\" % load_x,\n \"buf2[tx] = buf[tx]\",\n \"}\",\n \"__syncthreads()\",\n inline_softmax('N', 'buf', 'buf2', 'threadIdx.x',\n 'blockDim.x', dtype=work_sm),\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n # This set all value correctly\n \"sm[blockIDX * sm_s0 + tx * sm_s1] = %s(buf[tx])\" % write_sm,\n \"}\",\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n kname = \"kSoftmax_fixed_shared\"\n k_var = \"kSoftmax_fixed_shared\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"x = (const %s *)(((char *)x)+offset_x)\" % type_x,\n \"sm = (%s *)(((char *)sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"const %s *x_ptr = &x[blockIDX * sx0]\" % type_x,\n \"%s *sm_ptr = &sm[blockIDX * sm_s0]\" % type_sm,\n inline_softmax_fixed_shared('N', 'buf', 'x_ptr', 'sx1',\n load_x,\n 'sm_ptr', 'sm_s1', write_sm,\n 'threadIdx.x', 'blockDim.x',\n dtype=work_sm),\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n return kernels", "metadata": "root.GpuSoftmax.gpu_kernels", "header": "['class', 'GpuSoftmax', '(', 'GpuKernelBase', ',', 'Op', ')', ':', '___EOS___']", "index": 678 }, { "content": " def gpu_kernels(self, node, nodename):\n dtype_x = node.inputs[0].dtype\n dtype_b = node.inputs[1].dtype\n dtype_sm = node.outputs[0].dtype\n load_x = load_w(node.inputs[0].dtype)\n load_b = load_w(node.inputs[1].dtype)\n write_sm = write_w(node.outputs[0].dtype)\n work_sm = work_dtype(node.outputs[0].dtype)\n flags = Kernel.get_flags(dtype_x, dtype_b, dtype_sm)\n type_x = gpuarray.dtype_to_ctype(dtype_x)\n type_b = gpuarray.dtype_to_ctype(dtype_b)\n type_sm = gpuarray.dtype_to_ctype(dtype_sm)\n type_acc = gpuarray.dtype_to_ctype(work_sm)\n params = [\n 'uintp', 'uintp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp',\n gpuarray.GpuArray, 'uintp', 'intp',\n gpuarray.GpuArray, 'uintp', 'intp', 'intp'\n ]\n kernels = []\n kname = \"kSoftmaxWithBias\"\n k_var = \"kSoftmaxWithBias_\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n 'const %s * b' % type_b, 'const ga_size offset_b',\n 'const ga_ssize sb0',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"%s * buf2 = buf + N\" % type_acc,\n \"x = (const %s *)(((char *)x)+offset_x)\" % type_x,\n \"b = (const %s *)(((char *)b)+offset_b)\" % type_b,\n \"sm = (%s *)(((char *)sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n \"buf[tx] = %s(x[blockIDX * sx0 + tx * sx1])\" % load_x,\n \"buf[tx] += %s(b[tx * sb0])\" % load_b,\n \"buf2[tx] = buf[tx]\",\n \"}\",\n \"__syncthreads()\",\n inline_softmax('N', 'buf', 'buf2',\n 'threadIdx.x', 'blockDim.x', work_sm),\n \"for (int tx = threadIdx.x; tx< N; tx += blockDim.x){\",\n \"sm[blockIDX * sm_s0 + tx * sm_s1] = %s(buf[tx])\" % write_sm,\n \"}\",\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n kname = \"kSoftmaxWithBias_fixed_shared\"\n k_var = \"kSoftmaxWithBias_fixed_shared\" + nodename\n code = nvcc_kernel(\n kname,\n params=['const ga_size M', 'const ga_size N',\n 'const %s * x' % type_x, 'const ga_size offset_x',\n 'const ga_ssize sx0', 'const ga_ssize sx1',\n 'const %s * b' % type_b, 'const ga_size offset_b',\n 'const ga_ssize sb0',\n '%s * sm' % type_sm, 'const ga_size offset_sm',\n 'const ga_ssize sm_s0', 'const ga_ssize sm_s1'],\n body=[\"extern __shared__ %s buf[]\" % type_acc,\n \"x = (const %s *)(((char *)x)+offset_x)\" % type_x,\n \"b = (const %s *)(((char *)b)+offset_b)\" % type_b,\n \"sm = (%s *)(((char *)sm)+offset_sm)\" % type_sm,\n \"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",\n \"const %s *x_ptr = &x[blockIDX * sx0]\" % type_x,\n \"%s *sm_ptr = &sm[blockIDX * sm_s0]\" % type_sm,\n inline_softmax_fixed_shared('N', 'buf', 'x_ptr', 'sx1',\n load_x,\n 'sm_ptr', 'sm_s1', write_sm,\n 'threadIdx.x', 'blockDim.x',\n 'b', 'sb0', load_b, work_sm),\n \"__syncthreads()\",\n \"}\",\n ])\n kernels.append(Kernel(code=code, name=kname, params=params,\n flags=flags, objvar=k_var))\n return kernels", "metadata": "root.GpuSoftmaxWithBias.gpu_kernels", "header": "['class', 'GpuSoftmaxWithBias', '(', 'GpuKernelBase', ',', 'Op', ')', ':', '___EOS___']", "index": 892 } ]

[ { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", "start_line": 707, "start_column": 18, "end_line": 708, "end_column": 48 }, { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", "start_line": 737, "start_column": 18, "end_line": 738, "end_column": 48 }, { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", "start_line": 928, "start_column": 18, "end_line": 929, "end_column": 48 }, { "span": "\"for (int blockIDX = blockIdx.x; blockIDX < M;\"\n \" blockIDX += gridDim.x){\",", "start_line": 961, "start_column": 18, "end_line": 962, "end_column": 48 } ]

[]

1

true

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Unused import

splunk/splunk-webframework/server/splunkdj/middlewares.py

[ { "content": "\nfrom django.middleware.csrf import get_token\nfrom django.conf import settings\nfrom django.middleware.locale import LocaleMiddleware\nfrom django.core.urlresolvers import is_valid_path, resolve, reverse\nfrom django.http import HttpResponseRedirect\nfrom django.utils.cache import patch_vary_headers\nfrom django.utils import translation\nfrom django.http import Http404\n\nfrom splunkdj.auth.backends import get_user\nfrom splunkdj.utility import format_local_tzoffset, create_derived_service\n\nimport datetime\nimport time\nimport logging, logging.handlers\nimport rfc822\nimport sys\nimport os\n\nlogger = logging.getLogger('spl.django.service')\n \n \n \n \n \n\n# This Django request logger is an implementation of Splunkweb's logging \n# handler. Django's objects are different, but the resulting logs are meant\n# to be the same as Splunkweb\n\n \n\n \n ", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class SplunkCsrfMiddleware(object):", "metadata": "root.SplunkCsrfMiddleware", "header": "['module', '___EOS___']", "index": 22 }, { "content": " def process_view(self, request, *args, **kwargs):\n get_token(request)\n return None", "metadata": "root.SplunkCsrfMiddleware.process_view", "header": "['class', 'SplunkCsrfMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 23 }, { "content": "class SplunkResolvedUrlMiddleware(object):", "metadata": "root.SplunkResolvedUrlMiddleware", "header": "['module', '___EOS___']", "index": 27 }, { "content": " def process_request(self, request):\n # Set a default so we don't have to ensure it has the attribute\n request.app_name = None\n request.url_name = None\n \n resolved = None\n try:\n resolved = resolve(request.path_info)\n except:\n # If we had an error in resolution, then we can continue, we don't\n # need to do anything\n pass\n \n # If we don't have a resolved match, there is nothing for us to do. \n # We can just go ahead and return.\n if resolved:\n request.app_name = resolved.app_name\n request.url_name = resolved.url_name\n \n return", "metadata": "root.SplunkResolvedUrlMiddleware.process_request", "header": "['class', 'SplunkResolvedUrlMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 28 }, { "content": "class SplunkAppEnabledMiddleware(object):\n \"\"\"\n Ensure that when a URL pattern is accessed in a particular app-scope,\n that the app in question is enabled.\n \"\"\"\n \n ", "metadata": "root.SplunkAppEnabledMiddleware", "header": "['module', '___EOS___']", "index": 49 }, { "content": " def _verify_app_is_enabled(self, service, app_name):\n if app_name and app_name == 'homefx':\n return\n \n # We need to use the most general service as the app may be disabled.\n service = create_derived_service(service, app=None, owner=None)\n try:\n app = service.apps[app_name]\n if app['disabled'] == '1' or app['visible'] == '0':\n raise Http404(\"Application '%s' is disabled.\" % app_name)\n except:\n raise Http404(\"Application '%s' is disabled.\" % app_name)", "metadata": "root.SplunkAppEnabledMiddleware._verify_app_is_enabled", "header": "['class', 'SplunkAppEnabledMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 55 }, { "content": " def process_request(self, request):\n if request.app_name and request.user.is_authenticated():\n # Now that we have a name for the app, we can go ahead and\n # try and see if that app is enabled.\n return self._verify_app_is_enabled(request.service, request.app_name)\n \n return", "metadata": "root.SplunkAppEnabledMiddleware.process_request", "header": "['class', 'SplunkAppEnabledMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 68 }, { "content": "class SplunkLocaleMiddleware(LocaleMiddleware):\n # The base LocaleMiddleware class in Django core does not seem to properly\n # handle redirects when Django is not mounted on the root. This simply\n # reimplements the logic for handling the response, most of this code is\n # taken verbatim, and we only changed the path that we redirect to.", "metadata": "root.SplunkLocaleMiddleware", "header": "['module', '___EOS___']", "index": 76 }, { "content": " def process_response(self, request, response):\n language = translation.get_language()\n if (response.status_code == 404 and\n not translation.get_language_from_path(request.path_info)\n and self.is_language_prefix_patterns_used()):\n urlconf = getattr(request, 'urlconf', None)\n language_path = '/%s%s' % (language, request.path_info)\n path_valid = is_valid_path(language_path, urlconf)\n if (not path_valid and settings.APPEND_SLASH\n and not language_path.endswith('/')):\n path_valid = is_valid_path(\"%s/\" % language_path, urlconf)\n\n if path_valid:\n path = request.get_full_path()\n script_mount = request.META.get(\"SCRIPT_NAME\", \"\")\n \n if path.startswith(script_mount):\n path = path.replace(script_mount, (\"%s/%s\" % (script_mount, language)), 1)\n \n language_url = \"%s://%s%s\" % (\n request.is_secure() and 'https' or 'http',\n request.get_host(), path)\n return HttpResponseRedirect(language_url)\n translation.deactivate()\n\n patch_vary_headers(response, ('Accept-Language',))\n if 'Content-Language' not in response:\n response['Content-Language'] = language\n return response", "metadata": "root.SplunkLocaleMiddleware.process_response", "header": "['class', 'SplunkLocaleMiddleware', '(', 'LocaleMiddleware', ')', ':', '___NEWLINE___', '# The base LocaleMiddleware class in Django core does not seem to properly', '___NL___', '# handle redirects when Django is not mounted on the root. This simply', '___NL___', '# reimplements the logic for handling the response, most of this code is', '___NL___', '# taken verbatim, and we only changed the path that we redirect to.', '___NL___', '___EOS___']", "index": 81 }, { "content": "class SplunkWebSessionMiddleware(object):\n \n ", "metadata": "root.SplunkWebSessionMiddleware", "header": "['module', '___EOS___']", "index": 111 }, { "content": " def __init__(self, port=8000, **kwargs):\n \n self._initialized = False\n self._storage_path = None\n \n if not settings.SPLUNK_WEB_INTEGRATED:\n return\n \n try:\n from lib.util import splunk_to_cherry_cfg, make_absolute\n \n cherrypy_cfg = splunk_to_cherry_cfg('web', 'settings')\n \n storage_type = cherrypy_cfg.get('tools.sessions.storage_type')\n storage_path = None\n \n if storage_type == 'file':\n storage_path = make_absolute(cherrypy_cfg['tools.sessions.storage_path'])\n else:\n return\n \n self._storage_path = storage_path\n self._initialized = True\n except Exception, e:\n self._initialized = False\n pass", "metadata": "root.SplunkWebSessionMiddleware.__init__", "header": "['class', 'SplunkWebSessionMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 112 }, { "content": " def process_request(self, request):\n if not self._initialized or not self._storage_path:\n return\n \n user = None\n session = None\n \n try:\n from lib.sessions import FileSession\n \n cookie_name = 'session_id_%s' % settings.SPLUNK_WEB_PORT\n if cookie_name not in request.COOKIES:\n return\n \n splunkweb_cookie = request.COOKIES[cookie_name]\n \n session = FileSession(\n splunkweb_cookie,\n storage_path=self._storage_path,\n timeout=60,\n clean_freq=5\n )\n \n # Acquire the lock. If this fails, we assume that the lock is no\n # longer acquired, and thus does not need to be released. Any \n # future use is protected by the try/finally which will release\n # the lock when it is complete.\n session.acquire_lock(read_lock=True)\n \n # DO NOT PUT ANYTHING HERE. ALL CODE SHOULD BE INSIDE THE TRY/FINALLY,\n # SO THAT WE CAN ENSURE THE SESSION LOCK GETS RELEASED.\n \n try:\n if 'sessionKey' in session:\n session_key = \"Splunk %s\" % session['sessionKey']\n username = None\n \n if 'user' in session and 'name' in session['user']:\n username = session['user']['name']\n \n user = get_user(username, session_key)\n if user:\n request._cached_user = user\n finally:\n # If we failed to create a user, and we have a session,\n # then we need to delete the session.\n # The main reason is that if we don't have a user, it means\n # we are not authenticated. If we aren't authenticated, we'll\n # get redirected to Splunkweb's login page, which will just \n # redirect us back if a sessionKey value exists (whether it\n # is valid or not). We then get into an infinite redirect loop,\n # as we'll just come back here.\n if not user:\n session.delete()\n \n # Release the lock\n session.release_lock()\n \n except Exception, e:\n logger.exception(e)\n pass", "metadata": "root.SplunkWebSessionMiddleware.process_request", "header": "['class', 'SplunkWebSessionMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 140 }, { "content": "class SplunkDjangoRequestLoggingMiddleware(object):\n error_logger = None\n access_logger = None\n\n access_log_format = '%(h)s %(l)s %(u)s %(t)s \"%(r)s\" %(s)s %(b)s \"%(f)s\" \"%(a)s\"' \n\n\n", "metadata": "root.SplunkDjangoRequestLoggingMiddleware", "header": "['module', '___EOS___']", "index": 206 }, { "content": " def __init__(self):\n self.access_logger = logging.getLogger('spl.django.access')\n self.error_logger = logging.getLogger('spl.django.error')", "metadata": "root.SplunkDjangoRequestLoggingMiddleware.__init__", "header": "['class', 'SplunkDjangoRequestLoggingMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 212 }, { "content": " def process_response(self, request, response):\n\n \"\"\"\n Write to the access log (in Apache/NCSA Combined Log format).\n\n This is a port of the Splunk web_access logging code. It is a rough\n mapping of request objects in the splunk web cherrypy server to equivalent\n objects in the django environment \n \"\"\"\n atoms = {'h': request.META.get('REMOTE_ADDR', ''),# or REMOTE_HOST\n 'l': '-',\n 'u': getattr(request, 'user', '-'),\n 't': self.access_time(time.time()), #TODO: splunkweb uses cherrypy.serving.response.time\n 'r': \"%s %s %s\" % (request.method, \n request.get_full_path(), \n request.META.get('SERVER_PROTOCOL', '')), #or ACTUAL_SERVER_PROTOCOL\n 's': response.status_code,\n 'b': len(response.content) or '-',\n 'f': request.META.get('HTTP_REFERER', ''),\n 'a': request.META.get('HTTP_USER_AGENT', ''),\n }\n\n for k, v in atoms.items():\n if isinstance(v, unicode):\n v = v.encode('utf8')\n elif not isinstance(v, str):\n v = str(v)\n # Fortunately, repr(str) escapes unprintable chars, \\n, \\t, etc\n # and backslash for us. All we have to do is strip the quotes.\n v = repr(v)[1:-1]\n # Escape double-quote.\n atoms[k] = v.replace('\"', '\\\\\"')\n\n try:\n #TODO: add a response id and time here?\n self.access_logger.info(self.access_log_format % atoms)\n except:\n error_logger.log(\"Error writing access log\")\n self(traceback=true)\n\n return response", "metadata": "root.SplunkDjangoRequestLoggingMiddleware.process_response", "header": "['class', 'SplunkDjangoRequestLoggingMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 216 }, { "content": " def access_time(self, req_time):\n now = datetime.datetime.fromtimestamp(req_time)\n month = rfc822._monthnames[now.month - 1].capitalize()\n return ('[%02d/%s/%04d:%02d:%02d:%02d.%03d %s]' %\n (now.day, month, now.year, now.hour, now.minute, now.second, \n now.microsecond/1000, format_local_tzoffset(req_time)))", "metadata": "root.SplunkDjangoRequestLoggingMiddleware.access_time", "header": "['class', 'SplunkDjangoRequestLoggingMiddleware', '(', 'object', ')', ':', '___EOS___']", "index": 258 } ]

[ { "span": "from django.core.urlresolvers import is_valid_path, resolve, reverse", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 68 }, { "span": "import sys", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 10 }, { "span": "import os", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 9 } ]

[]

1

false

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Unused import

azoft-dev-team/imagrium/env/Lib/xml/sax/__init__.py

[ { "content": "\"\"\"Simple API for XML (SAX) implementation for Python.\n\nThis module provides an implementation of the SAX 2 interface;\ninformation about the Java version of the interface can be found at\nhttp://www.megginson.com/SAX/. The Python version of the interface is\ndocumented at <...>.\n\nThis package contains the following modules:\n\nhandler -- Base classes and constants which define the SAX 2 API for\n the 'client-side' of SAX for Python.\n\nsaxutils -- Implementation of the convenience classes commonly used to\n work with SAX.\n\nxmlreader -- Base classes and constants which define the SAX 2 API for\n the parsers used with SAX for Python.\n\ndrivers2 -- Contains the driver for that wraps a Java sax implementation in python\n objects.\n\"\"\"\n\nfrom xmlreader import InputSource\nfrom handler import ContentHandler, ErrorHandler\nfrom _exceptions import SAXException, SAXNotRecognizedException, \\\n SAXParseException, SAXNotSupportedException, \\\n SAXReaderNotAvailable\n\n\n\n\n# this is the parser list used by the make_parser function if no\n# alternatives are given as parameters to the function\n\ndefault_parser_list = [\"xml.sax.drivers2.drv_javasax\"]\n\n# tell modulefinder that importing sax potentially imports expatreader\n_false = 0\nif _false:\n import xml.sax.drivers2.drv_javasax\n\nimport os, sys\nif os.environ.has_key(\"PY_SAX_PARSER\"):\n default_parser_list = os.environ[\"PY_SAX_PARSER\"].split(\",\")\ndel os\n\n_key = \"python.xml.sax.parser\"\nif sys.platform[:4] == \"java\" and sys.registry.containsKey(_key):\n default_parser_list = sys.registry.getProperty(_key).split(\",\")\n\n\n\n# --- Internal utility methods used by make_parser\n\n\ndel sys\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def parse(source, handler, errorHandler=ErrorHandler()):\n parser = make_parser()\n parser.setContentHandler(handler)\n parser.setErrorHandler(errorHandler)\n parser.parse(source)", "metadata": "root.parse", "header": "['module', '___EOS___']", "index": 29 }, { "content": "def parseString(string, handler, errorHandler=ErrorHandler()):\n try:\n from cStringIO import StringIO\n except ImportError:\n from StringIO import StringIO\n\n if errorHandler is None:\n errorHandler = ErrorHandler()\n parser = make_parser()\n parser.setContentHandler(handler)\n parser.setErrorHandler(errorHandler)\n\n inpsrc = InputSource()\n inpsrc.setByteStream(StringIO(string))\n parser.parse(inpsrc)", "metadata": "root.parseString", "header": "['module', '___EOS___']", "index": 35 }, { "content": "def make_parser(parser_list = []):\n \"\"\"Creates and returns a SAX parser.\n\n Creates the first parser it is able to instantiate of the ones\n given in the list created by doing parser_list +\n default_parser_list. The lists must contain the names of Python\n modules containing both a SAX parser and a create_parser function.\"\"\"\n\n for parser_name in parser_list + default_parser_list:\n try:\n return _create_parser(parser_name)\n except ImportError,e:\n import sys\n if sys.modules.has_key(parser_name):\n # The parser module was found, but importing it\n # failed unexpectedly, pass this exception through\n raise\n except SAXReaderNotAvailable:\n # The parser module detected that it won't work properly,\n # so try the next one\n pass\n\n raise SAXReaderNotAvailable(\"No parsers found\", None)", "metadata": "root.make_parser", "header": "['module', '___EOS___']", "index": 71 }, { "content": "def _create_parser(parser_name):\n drv_module = __import__(parser_name,{},{},['create_parser'])\n return drv_module.create_parser()", "metadata": "root._create_parser", "header": "['module', '___EOS___']", "index": 97 } ]

[ { "span": "from handler import ContentHandler, ErrorHandler", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 48 }, { "span": "from _exceptions import SAXException, SAXNotRecognizedException, \\\n SAXParseException, SAXNotSupportedException, \\\n SAXReaderNotAvailable", "start_line": 24, "start_column": 0, "end_line": 26, "end_column": 45 } ]

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Except block handles 'BaseException'

GoogleCloudPlatform/python-compat-runtime/appengine-compat/exported_appengine_sdk/google/appengine/tools/appcfg.py

[ { "content": " def LogClientDeploy(self, runtime, start_time_usec, success):\n \"\"\"Logs a client deployment attempt.\n\n Args:\n runtime: The runtime for the app being deployed.\n start_time_usec: The start time of the deployment in micro seconds.\n success: True if the deployment succeeded otherwise False.\n \"\"\"\n if not self.usage_reporting:\n logging.info('Skipping usage reporting.')\n return\n end_time_usec = self.GetCurrentTimeUsec()\n try:\n info = client_deployinfo.ClientDeployInfoExternal(\n runtime=runtime,\n start_time_usec=start_time_usec,\n end_time_usec=end_time_usec,\n requests=self.requests,\n success=success,\n sdk_version=self.GetSdkVersion())\n self.Send('/api/logclientdeploy', info.ToYAML())\n except BaseException, e:\n logging.debug('Exception logging deploy info continuing - %s', e)", "metadata": "root._ClientDeployLoggingContext.LogClientDeploy", "header": "['class', '_ClientDeployLoggingContext', '(', 'object', ')', ':', '___EOS___']", "index": 1730 } ]

[ { "span": "except BaseException, e:", "start_line": 1751, "start_column": 4, "end_line": 1751, "end_column": 28 } ]

[]

1

true

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Unused import

cjerdonek/open-rcv/openrcv/scripts/run.py

[ { "content": "#\n# Copyright (c) 2014 Chris Jerdonek. All rights reserved.\n#\n# Permission is hereby granted, free of charge, to any person obtaining a\n# copy of this software and associated documentation files (the \"Software\"),\n# to deal in the Software without restriction, including without limitation\n# the rights to use, copy, modify, merge, publish, distribute, sublicense,\n# and/or sell copies of the Software, and to permit persons to whom the\n# Software is furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included\n# in all copies or substantial portions of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL\n# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER\n# DEALINGS IN THE SOFTWARE.\n#\n\nimport argparse2 as argparse\nfrom contextlib import contextmanager\nimport logging\nimport os\nimport sys\nfrom textwrap import dedent\nfrom traceback import format_exc\n\nimport colorlog\n\nfrom openrcv.scripts.argparse import (parse_log_level, HelpRequested,\n UsageException)\n\n\nEXIT_STATUS_SUCCESS = 0\nEXIT_STATUS_FAIL = 1\nEXIT_STATUS_USAGE_ERROR = 2\n\nPROG_NAME = os.path.basename(sys.argv[0])\n\nlog = logging.getLogger(PROG_NAME)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# TODO: test the UsageException code path.\n\n\n# We follow most of Guido van Rossum's 2003 advice regarding main()\n# functions (though we choose _main() as the function that returns an exit\n# status rather than main()):\n# http://www.artima.com/weblogs/viewpost.jsp?thread=4829\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class DisplayNameFilter(object):\n\n \"\"\"A logging filter that sets display_name.\"\"\"\n", "metadata": "root.DisplayNameFilter", "header": "['module', '___EOS___']", "index": 45 }, { "content": " def filter(self, record):\n record.display_name = record.name\n return True", "metadata": "root.DisplayNameFilter.filter", "header": "['class', 'DisplayNameFilter', '(', 'object', ')', ':', '___EOS___']", "index": 49 }, { "content": "class TruncatedDisplayNameFilter(object):\n\n \"\"\"A logging filter that sets a truncated display_name.\"\"\"\n", "metadata": "root.TruncatedDisplayNameFilter", "header": "['module', '___EOS___']", "index": 54 }, { "content": " def filter(self, record):\n parts = record.name.split(\".\")\n if len(parts) <= 3:\n display_name = record.name\n else:\n # For example, \"a.b.c.d\" becomes \"a.b...d\".\n display_name = '.'.join(parts[:2] + ['.', parts[-1]])\n record.display_name = display_name\n return True", "metadata": "root.TruncatedDisplayNameFilter.filter", "header": "['class', 'TruncatedDisplayNameFilter', '(', 'object', ')', ':', '___EOS___']", "index": 58 }, { "content": "def get_filter(level):\n if level <= logging.DEBUG:\n cls = DisplayNameFilter\n else:\n cls = TruncatedDisplayNameFilter\n return cls()", "metadata": "root.get_filter", "header": "['module', '___EOS___']", "index": 69 }, { "content": "def make_formatter():\n # Prefix log messages unobtrusively with \"log\" to distinguish log\n # messages more obviously from other text sent to the error stream.\n format_string = (\"%(bg_black)s%(log_color)slog: %(display_name)s: \"\n \"[%(levelname)s]%(reset)s %(message)s\")\n colors = colorlog.default_log_colors\n colors['DEBUG'] = 'white'\n formatter = colorlog.ColoredFormatter(format_string, log_colors=colors)\n return formatter", "metadata": "root.make_formatter", "header": "['module', '___EOS___']", "index": 77 }, { "content": "def make_log_handler(level, file_=None):\n if file_ is None:\n file_ = sys.stderr\n\n # If file_ is None, StreamHandler uses sys.stderr.\n handler = logging.StreamHandler(file_)\n # TODO: can we delete this code comment? Is there any reason\n # to set this handler to a level different from the root logger?\n #handler.setLevel(level)\n\n filter_ = get_filter(level)\n handler.addFilter(filter_)\n\n formatter = make_formatter()\n handler.setFormatter(formatter)\n\n return handler", "metadata": "root.make_log_handler", "header": "['module', '___EOS___']", "index": 87 }, { "content": "@contextmanager\ndef log_config(level, file_=None):\n \"\"\"\n A context manager to configure logging and then undo the configuration.\n\n Undoing the configuration is useful for testing, since otherwise\n many log handlers might accumulate during the course of testing,\n due to successive calls to this method.\n\n Arguments:\n\n level: lowest logging level to log.\n file_: the file object to use for logging (e.g. sys.stderr).\n\n \"\"\"\n if level is None:\n level = LOG_LEVEL_DEFAULT\n root = logging.getLogger()\n # If logging was already configured (e.g. at the outset of a test run),\n # then let's not change the root logging level.\n # TODO: simplify this logic (e.g. we should not need \"if\" logic).\n already_configured = root.hasHandlers()\n handler = make_log_handler(level, file_=file_)\n root.addHandler(handler)\n if not already_configured:\n root.setLevel(level)\n log.debug(\"root logger level set to: %r\" % logging.getLevelName(level))\n log.debug(\"a logging handler was added\")\n yield\n root.removeHandler(handler)", "metadata": "root.log_config", "header": "['module', '___EOS___']", "index": 106 }, { "content": "def make_usage_error(msg, help_options):\n text = dedent(\"\"\"\\\n Command-line usage error: {!s}\n\n Pass {!s} for help documentation and available options.\"\"\").format(msg, help_options)\n return text", "metadata": "root.make_usage_error", "header": "['module', '___EOS___']", "index": 138 }, { "content": "def print_usage_error(parser, msg, file_=None):\n if file_ is None:\n file_ = sys.stderr\n if len(sys.argv) == 1:\n parser.print_help()\n parser.print_usage(file_)\n text = make_usage_error(msg, parser.option_help.display(' or '))\n log.error(text)", "metadata": "root.print_usage_error", "header": "['module', '___EOS___']", "index": 146 }, { "content": "def non_exiting_main(parser, argv, stdout=None, log_file=None):\n \"\"\"\n Run the program, and return the exit status without exiting.\n\n Arguments:\n parser: an argparse.ArgumentParser object.\n\n \"\"\"\n args = argv[1:]\n log_level = parser.safe_get_log_level(args)\n\n if stdout is None:\n stdout = sys.stdout\n with log_config(level=log_level, file_=log_file):\n log.debug(\"argv: %r\" % argv)\n try:\n ns = parser.parse_args(args=args) # Namespace object\n log.debug(\"ns: %r\" % ns)\n # Make no args default to running help.\n try:\n # There seems to be a bug in argparse where the parent\n # parser's default run_command is used for args like\n # \"rcv randcontest\" (when nothing is after randcontest),\n # when parser.set_defaults(run_command=...) is used to set\n # the default on the parent parser. Thus we use try-except\n # here instead. I believe this is the issue:\n # http://bugs.python.org/issue9351\n command = ns.run_command\n except AttributeError:\n raise HelpRequested(parser=parser)\n output = command(ns, stdout=stdout)\n if output is not None:\n stdout.write(output)\n status = EXIT_STATUS_SUCCESS\n except HelpRequested as exc:\n parser = exc.parser\n parser.print_help(file=stdout)\n status = EXIT_STATUS_SUCCESS\n except UsageException as exc:\n # As of Python 3.4, argparse.ArgumentParser's error() implementation\n # looked like this--\n # self.print_usage(_sys.stderr)\n # args = {'prog': self.prog, 'message': message}\n # self.exit(2, _('%(prog)s: error: %(message)s\\n') % args)\n err_args, parser = exc.args, exc.parser\n assert len(err_args) == 1\n print_usage_error(parser, err_args[0], file_=log_file)\n status = EXIT_STATUS_USAGE_ERROR\n # TODO: decide whether to handle the error case manually, or let\n # Python do it by default. One problem with the former\n # is that exceptions don't show up during test failures.\n # except Exception as err:\n #\n # # Log the full exception info for \"unexpected\" exceptions.\n # log.error(format_exc())\n # status = EXIT_STATUS_FAIL\n\n return status", "metadata": "root.non_exiting_main", "header": "['module', '___EOS___']", "index": 157 }, { "content": "def main(parser, argv=None):\n if argv is None:\n argv = sys.argv\n status = non_exiting_main(parser, argv)\n sys.exit(status)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 221 } ]

[ { "span": "import argparse2 as argparse", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 28 }, { "span": "from traceback import format_exc", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 32 }, { "span": "from openrcv.scripts.argparse import (parse_log_level, HelpRequested,\n UsageException)", "start_line": 32, "start_column": 0, "end_line": 33, "end_column": 53 } ]

[]

1

false

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Unused import

deanhiller/databus/webapp/play1.3.x/framework/pym/play/commands/war.py

[ { "content": "import sys\nimport os\nimport getopt\nimport shutil\n\nimport play.commands.precompile\nfrom play.utils import *\n\nCOMMANDS = [\"war\"]\n\nHELP = {\n 'war': 'Export the application as a standalone WAR archive'\n}\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def execute(**kargs):\n\n command = kargs.get(\"command\")\n app = kargs.get(\"app\")\n args = kargs.get(\"args\")\n env = kargs.get(\"env\")\n\n war_path = None\n war_zip_path = None\n war_exclusion_list = []\n try:\n optlist, args = getopt.getopt(args, 'o:', ['output=', 'zip','exclude='])\n for o, a in optlist:\n if o in ('-o', '--output'):\n war_path = os.path.normpath(os.path.abspath(a))\n for o, a in optlist:\n if o in ('--zip'):\n war_zip_path = war_path + '.war'\n if o in ('--exclude'):\n war_exclusion_list = a.split(':')\n print \"~ Excluding these directories :\"\n for excluded in war_exclusion_list:\n print \"~ %s\" %excluded\n except getopt.GetoptError, err:\n print \"~ %s\" % str(err)\n print \"~ Please specify a path where to generate the WAR, using the -o or --output option.\"\n print \"~ To exclude some directories, use the --exclude option and ':'-separator (eg: --exclude .svn:target:logs:tmp).\"\n print \"~ \"\n sys.exit(-1)\n\n if not war_path:\n print \"~ Oops. Please specify a path where to generate the WAR, using the -o or --output option\"\n print \"~ To exclude some directories, use the --exclude option and ':'-separator (eg: --exclude .svn:target:logs:tmp).\"\n print \"~\"\n sys.exit(-1)\n\n if os.path.exists(war_path) and not os.path.exists(os.path.join(war_path, 'WEB-INF')):\n print \"~ Oops. The destination path already exists but does not seem to host a valid WAR structure\"\n print \"~\"\n sys.exit(-1)\n\n if isParentOf(app.path, war_path) and not isExcluded(war_path, war_exclusion_list):\n print \"~ Oops. Please specify a destination directory outside of the application\"\n print \"~ or exclude war destination directory using the --exclude option and ':'-separator \"\n print \"~ (eg: --exclude .svn:target:logs:tmp).\"\n print \"~\"\n sys.exit(-1)\n\n # Precompile first\n precompilation_result = play.commands.precompile.execute(command=command, app=app, args=args, env=env)\n\n if precompilation_result != 0:\n print \"~ Please fix compilation errors before packaging WAR\"\n print \"~\"\n sys.exit(precompilation_result)\n\n # Package\n package_as_war(app, env, war_path, war_zip_path, war_exclusion_list)\n\n print \"~ Done !\"\n print \"~\"\n print \"~ You can now load %s as a standard WAR into your servlet container\" % (os.path.normpath(war_path))\n print \"~ You can't use play standard commands to run/stop/debug the WAR application...\"\n print \"~ ... just use your servlet container commands instead\"\n print \"~\"\n print \"~ Have fun!\"\n print \"~\"", "metadata": "root.execute", "header": "['module', '___EOS___']", "index": 14 } ]

[ { "span": "import shutil", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 13 } ]

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Unused import

coreemu/core/daemon/core/emane/nodes.py

[ { "content": "#\n# CORE\n# Copyright (c)2010-2014 the Boeing Company.\n# See the LICENSE file included in this distribution.\n#\n# author: Jeff Ahrenholz <[email protected]>\n#\n'''\nnodes.py: definition of an EmaneNode class for implementing configuration\ncontrol of an EMANE emulation. An EmaneNode has several attached NEMs that\nshare the same MAC+PHY model.\n'''\n\nimport sys\nimport os.path\n\nfrom core.api import coreapi\nfrom core.coreobj import PyCoreNet\ntry:\n from emanesh.events import EventService\n from emanesh.events import LocationEvent\nexcept Exception, e:\n pass\n\ntry:\n import emaneeventservice\n import emaneeventlocation\nexcept Exception, e:\n ''' Don't require all CORE users to have EMANE libeventservice and its\n Python bindings installed.\n '''\n pass\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class EmaneNet(PyCoreNet):\n ''' EMANE network base class.\n '''\n apitype = coreapi.CORE_NODE_EMANE\n linktype = coreapi.CORE_LINK_WIRELESS\n type = \"wlan\" # icon used", "metadata": "root.EmaneNet", "header": "['module', '___EOS___']", "index": 33 }, { "content": "class EmaneNode(EmaneNet):\n ''' EMANE node contains NEM configuration and causes connected nodes\n to have TAP interfaces (instead of VEth). These are managed by the\n Emane controller object that exists in a session.\n '''\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.EmaneNode", "header": "['module', '___EOS___']", "index": 40 }, { "content": " def __init__(self, session, objid = None, name = None, verbose = False,\n start = True):\n PyCoreNet.__init__(self, session, objid, name, verbose, start)\n self.verbose = verbose\n self.conf = \"\"\n self.up = False\n self.nemidmap = {}\n self.model = None\n self.mobility = None", "metadata": "root.EmaneNode.__init__", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 45 }, { "content": " def linkconfig(self, netif, bw = None, delay = None,\n loss = None, duplicate = None, jitter = None, netif2 = None):\n ''' The CommEffect model supports link configuration.\n '''\n if not self.model:\n return\n return self.model.linkconfig(netif=netif, bw=bw, delay=delay, loss=loss,\n duplicate=duplicate, jitter=jitter, netif2=netif2)", "metadata": "root.EmaneNode.linkconfig", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 55 }, { "content": " def config(self, conf):\n #print \"emane\", self.name, \"got config:\", conf\n self.conf = conf", "metadata": "root.EmaneNode.config", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 64 }, { "content": " def shutdown(self):\n pass", "metadata": "root.EmaneNode.shutdown", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 68 }, { "content": " def link(self, netif1, netif2):\n pass", "metadata": "root.EmaneNode.link", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 71 }, { "content": " def unlink(self, netif1, netif2):\n pass", "metadata": "root.EmaneNode.unlink", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 74 }, { "content": " def setmodel(self, model, config):\n ''' set the EmaneModel associated with this node\n '''\n if (self.verbose):\n self.info(\"adding model %s\" % model._name)\n if model._type == coreapi.CORE_TLV_REG_WIRELESS:\n # EmaneModel really uses values from ConfigurableManager\n # when buildnemxml() is called, not during init()\n self.model = model(session=self.session, objid=self.objid,\n verbose=self.verbose)\n elif model._type == coreapi.CORE_TLV_REG_MOBILITY:\n self.mobility = model(session=self.session, objid=self.objid,\n verbose=self.verbose, values=config)", "metadata": "root.EmaneNode.setmodel", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 77 }, { "content": " def setnemid(self, netif, nemid):\n ''' Record an interface to numerical ID mapping. The Emane controller\n object manages and assigns these IDs for all NEMs.\n '''\n self.nemidmap[netif] = nemid", "metadata": "root.EmaneNode.setnemid", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 91 }, { "content": " def getnemid(self, netif):\n ''' Given an interface, return its numerical ID.\n '''\n if netif not in self.nemidmap:\n return None\n else:\n return self.nemidmap[netif]", "metadata": "root.EmaneNode.getnemid", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 97 }, { "content": " def getnemnetif(self, nemid):\n ''' Given a numerical NEM ID, return its interface. This returns the\n first interface that matches the given NEM ID.\n '''\n for netif in self.nemidmap:\n if self.nemidmap[netif] == nemid:\n return netif\n return None", "metadata": "root.EmaneNode.getnemnetif", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 105 }, { "content": " def netifs(self, sort=True):\n ''' Retrieve list of linked interfaces sorted by node number.\n '''\n return sorted(self._netif.values(), key=lambda ifc: ifc.node.objid)", "metadata": "root.EmaneNode.netifs", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 114 }, { "content": " def buildplatformxmlentry(self, doc):\n ''' Return a dictionary of XML elements describing the NEMs\n connected to this EmaneNode for inclusion in the platform.xml file.\n '''\n ret = {}\n if self.model is None:\n self.info(\"warning: EmaneNode %s has no associated model\" % \\\n self.name)\n return ret\n for netif in self.netifs():\n # <nem name=\"NODE-001\" definition=\"rfpipenem.xml\">\n nementry = self.model.buildplatformxmlnementry(doc, self, netif)\n # <transport definition=\"transvirtual.xml\" group=\"1\">\n # <param name=\"device\" value=\"n1.0.158\" />\n # </transport>\n trans = self.model.buildplatformxmltransportentry(doc, self, netif)\n nementry.appendChild(trans)\n ret[netif] = nementry\n\n return ret", "metadata": "root.EmaneNode.buildplatformxmlentry", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 119 }, { "content": " def buildnemxmlfiles(self, emane):\n ''' Let the configured model build the necessary nem, mac, and phy\n XMLs.\n '''\n if self.model is None:\n return\n # build XML for overall network (EmaneNode) configs\n self.model.buildnemxmlfiles(emane, ifc=None)\n # build XML for specific interface (NEM) configs\n need_virtual = False\n need_raw = False\n vtype = \"virtual\"\n rtype = \"raw\"\n for netif in self.netifs():\n self.model.buildnemxmlfiles(emane, netif)\n if \"virtual\" in netif.transport_type:\n need_virtual = True\n vtype = netif.transport_type\n else:\n need_raw = True\n rtype = netif.transport_type\n # build transport XML files depending on type of interfaces involved\n if need_virtual:\n self.buildtransportxml(emane, vtype)\n if need_raw:\n self.buildtransportxml(emane, rtype)", "metadata": "root.EmaneNode.buildnemxmlfiles", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 140 }, { "content": " def buildtransportxml(self, emane, type):\n ''' Write a transport XML file for the Virtual or Raw Transport.\n '''\n transdoc = emane.xmldoc(\"transport\")\n trans = transdoc.getElementsByTagName(\"transport\").pop()\n trans.setAttribute(\"name\", \"%s Transport\" % type.capitalize())\n trans.setAttribute(\"library\", \"trans%s\" % type.lower())\n trans.appendChild(emane.xmlparam(transdoc, \"bitrate\", \"0\"))\n\n flowcontrol = False\n names = self.model.getnames()\n values = emane.getconfig(self.objid, self.model._name,\n self.model.getdefaultvalues())[1]\n if \"flowcontrolenable\" in names and values:\n i = names.index(\"flowcontrolenable\")\n if self.model.booltooffon(values[i]) == \"on\":\n flowcontrol = True\n\n if \"virtual\" in type.lower():\n if os.path.exists(\"/dev/net/tun_flowctl\"):\n trans.appendChild(emane.xmlparam(transdoc, \"devicepath\",\n \"/dev/net/tun_flowctl\"))\n else:\n trans.appendChild(emane.xmlparam(transdoc, \"devicepath\",\n \"/dev/net/tun\"))\n if flowcontrol:\n trans.appendChild(emane.xmlparam(transdoc, \"flowcontrolenable\",\n \"on\"))\n emane.xmlwrite(transdoc, self.transportxmlname(type.lower()))", "metadata": "root.EmaneNode.buildtransportxml", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 167 }, { "content": " def transportxmlname(self, type):\n ''' Return the string name for the Transport XML file,\n e.g. 'n3transvirtual.xml'\n '''\n return \"n%strans%s.xml\" % (self.objid, type)", "metadata": "root.EmaneNode.transportxmlname", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 197 }, { "content": " def installnetifs(self, do_netns=True):\n ''' Install TAP devices into their namespaces. This is done after\n EMANE daemons have been started, because that is their only chance\n to bind to the TAPs.\n '''\n if self.session.emane.genlocationevents() and \\\n self.session.emane.service is None:\n warntxt = \"unable to publish EMANE events because the eventservice \"\n warntxt += \"Python bindings failed to load\"\n self.session.exception(coreapi.CORE_EXCP_LEVEL_ERROR, self.name,\n self.objid, warntxt)\n\n for netif in self.netifs():\n if do_netns and \"virtual\" in netif.transport_type.lower():\n netif.install()\n netif.setaddrs()\n if not self.session.emane.genlocationevents():\n netif.poshook = None\n continue\n # at this point we register location handlers for generating\n # EMANE location events\n netif.poshook = self.setnemposition\n (x,y,z) = netif.node.position.get()\n self.setnemposition(netif, x, y, z)", "metadata": "root.EmaneNode.installnetifs", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 204 }, { "content": " def deinstallnetifs(self):\n ''' Uninstall TAP devices. This invokes their shutdown method for\n any required cleanup; the device may be actually removed when\n emanetransportd terminates.\n '''\n for netif in self.netifs():\n if \"virtual\" in netif.transport_type.lower():\n netif.shutdown()\n netif.poshook = None", "metadata": "root.EmaneNode.deinstallnetifs", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 229 }, { "content": " def setnemposition(self, netif, x, y, z):\n ''' Publish a NEM location change event using the EMANE event service.\n '''\n if self.session.emane.service is None:\n if self.verbose:\n self.info(\"position service not available\")\n return\n nemid = self.getnemid(netif)\n ifname = netif.localname\n if nemid is None:\n self.info(\"nemid for %s is unknown\" % ifname)\n return\n (lat, long, alt) = self.session.location.getgeo(x, y, z)\n if self.verbose:\n self.info(\"setnemposition %s (%s) x,y,z=(%d,%d,%s)\"\n \"(%.6f,%.6f,%.6f)\" % \\\n (ifname, nemid, x, y, z, lat, long, alt))\n if self.session.emane.version >= self.session.emane.EMANE091:\n event = LocationEvent()\n else:\n event = emaneeventlocation.EventLocation(1)\n # altitude must be an integer or warning is printed\n # unused: yaw, pitch, roll, azimuth, elevation, velocity\n alt = int(round(alt))\n if self.session.emane.version >= self.session.emane.EMANE091:\n event.append(nemid, latitude=lat, longitude=long, altitude=alt)\n self.session.emane.service.publish(0, event)\n else:\n event.set(0, nemid, lat, long, alt)\n self.session.emane.service.publish(emaneeventlocation.EVENT_ID,\n emaneeventservice.PLATFORMID_ANY,\n emaneeventservice.NEMID_ANY,\n emaneeventservice.COMPONENTID_ANY,\n event.export())", "metadata": "root.EmaneNode.setnemposition", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 239 }, { "content": " def setnempositions(self, moved_netifs):\n ''' Several NEMs have moved, from e.g. a WaypointMobilityModel\n calculation. Generate an EMANE Location Event having several\n entries for each netif that has moved.\n '''\n if len(moved_netifs) == 0:\n return\n if self.session.emane.service is None:\n if self.verbose:\n self.info(\"position service not available\")\n return\n\n if self.session.emane.version >= self.session.emane.EMANE091:\n event = LocationEvent()\n else:\n event = emaneeventlocation.EventLocation(len(moved_netifs))\n i = 0\n for netif in moved_netifs:\n nemid = self.getnemid(netif)\n ifname = netif.localname\n if nemid is None:\n self.info(\"nemid for %s is unknown\" % ifname)\n continue\n (x, y, z) = netif.node.getposition()\n (lat, long, alt) = self.session.location.getgeo(x, y, z)\n if self.verbose:\n self.info(\"setnempositions %d %s (%s) x,y,z=(%d,%d,%s)\"\n \"(%.6f,%.6f,%.6f)\" % \\\n (i, ifname, nemid, x, y, z, lat, long, alt))\n # altitude must be an integer or warning is printed\n alt = int(round(alt))\n if self.session.emane.version >= self.session.emane.EMANE091:\n event.append(nemid, latitude=lat, longitude=long, altitude=alt)\n else:\n event.set(i, nemid, lat, long, alt)\n i += 1\n\n if self.session.emane.version >= self.session.emane.EMANE091:\n self.session.emane.service.publish(0, event)\n else:\n self.session.emane.service.publish(emaneeventlocation.EVENT_ID,\n emaneeventservice.PLATFORMID_ANY,\n emaneeventservice.NEMID_ANY,\n emaneeventservice.COMPONENTID_ANY,\n event.export())", "metadata": "root.EmaneNode.setnempositions", "header": "['class', 'EmaneNode', '(', 'EmaneNet', ')', ':', '___EOS___']", "index": 274 } ]

[ { "span": "import sys", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 10 }, { "span": "from emanesh.events import EventService", "start_line": 19, "start_column": 4, "end_line": 19, "end_column": 43 } ]

[]

1

false

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

Except block handles 'BaseException'

CountZer0/PipelineConstructionSet/python/maya/site-packages/pymel-1.0.5/pymel/util/objectParser.py

[ { "content": "def currentfn() :\n try :\n return sys._getframe(1).f_code.co_name\n except :\n pass", "metadata": "root.currentfn", "header": "['module', '___EOS___']", "index": 38 }, { "content": " @classmethod\n def classparserbuild(cls, **kwargs):\n \"\"\" Inits class Parser, all instances of a Parsed class share the same yacc parser object \"\"\"\n\n clsname = cls.__name__\n try :\n # class declaration specifies a parser class\n parser = cls._parser\n except :\n # default rule\n parsername = cls.__name__+\"Parser\"\n parser = Parser.classes.get(parsername, None)\n cls._parser = parser\n warnings.warn (\"could not read '_parser' for %s, building Parser name %s from Parsed class name %s\" % (cls, parsername, clsname), UserWarning)\n\n if parser is not None :\n # if parser hasn't been built yet, build it\n if not isinstance(parser, Parser) :\n # parser is a class\n if inspect.isclass(parser) :\n parsername = parser.__name__\n if not issubclass (parser, Parser):\n raise ValueError, \"Parser %s specified in Parsed class %s is not a Parser class\" % (parsername, cls.__name__)\n # parser is a string\n elif parser in Parser.classes :\n parsername = parser\n parser = Parser.classes[parsername]\n else :\n raise ValueError, \"Invalid Parser specification %r in Parsed class %s\" % (parser, cls.__name__)\n\n # build class Parser, replace class _parser by the Parser instance object\n\n # print \"Building parser instance of Parser %s for Parsed class: %s\" % (parser, cls.__name__)\n # replace _parser attribute (which held a Parser class or classname) with parser class instance\n cls._parser = parser()\n cls._parser.build(**kwargs)\n # return cls._parser\n else :\n raise TypeError, \"Parsed class %s does not define a parser, check declarations\" % cls.__name__", "metadata": "root.Parsed.classparserbuild", "header": "['class', 'Parsed', '(', 'ProxyUni', ')', ':', '___EOS___']", "index": 98 }, { "content": " def __new__(cls, *args, **kwargs):\n \"\"\" Creation of a Parsed object from a LexToken, other Parsed of compatible type or string,\n if a string is passed it will be parsed and checked for compatibility with this Parsed type \"\"\"\n\n debug = kwargs.get('debug', verbose())\n # type checking\n data = None\n if args :\n if len(args) == 1:\n data = args[0]\n else :\n data = tuple(args)\n\n # some data (when initializing from single arg) can define the type of Parsed object to be created\n ptype = None\n if data is None :\n # only authorize Empty to be built without arguments\n ptype = 'Empty'\n elif isinstance(data, lex.LexToken) :\n ptype = kwargs.get('type', data.type)\n elif isinstance(data, Parsed) :\n ptype = data.__class__\n # can override type with the keyword 'type'\n ptype=kwargs.get('type', ptype)\n\n if (cls is Parsed or cls is Token) : #issubclass(cls, Token) ):\n if ptype is not None :\n if verbose():\n print \"__new__ called on Parsed/Token %s with type %r\" % (cls.__name__, ptype)\n newcls = Parsed.classes.get(ptype, None)\n # can only specify an existing subclass of cls\n if newcls is None :\n raise TypeError, \"Type %s does not correspond to any existing Parsed sub-class (%s does not exist)\" % (ptype, cls.__name__ )\n else :\n clsname = newcls.__name__\n if not issubclass(newcls, cls) :\n raise TypeError, \"Type %s would create a class %s that is not a sub-class of the class %s that __new__ was called on\" % (ptype, clsname, cls.__name__)\n else :\n raise TypeError, \"Class %s is an abstract class and can't be created directly, you must specify a valid sub-type\" % (cls.__name__)\n else :\n if verbose():\n print \"__new__ called on explicit class %s\" % (cls.__name__)\n clsname = cls.__name__\n newcls = cls\n\n # print \"Creating new instance of Parsed class: %r\" % newcls\n\n # process arguments and build, check arguments compatibility with that type\n pos = None\n sub = []\n valid = False\n value = data\n\n #if debug : print \"VALUE1\", value, repr(value)\n\n # special case for LexToken\n if isinstance(data, lex.LexToken) :\n if issubclass(newcls, Token) :\n # from a unique lex Token, do not check if also creating a Token\n sub = []\n pos = data.lexpos\n value = data.value\n valid = True\n else :\n # build a Token from it\n value = Token(data.value, ptype=data.type, pos=data.pos)\n\n if data is None :\n # Tokens can have default value to allow initialization without arguments\n try :\n value = newcls.default()\n valid = True\n except :\n valid = False\n elif isinstance(data, newcls) :\n #if debug : print \"IS INSTANCE\", data, repr(data)\n # from a similar class, copy it\n sub = data.sub\n pos = data.pos\n valid = data.isValid()\n value = unicode(data)\n elif newcls.accepts(data) :\n #if debug : print \"ACCEPTS\", data, repr(data)\n # from a compatible Parsed sub class, build the sub list from it\n sub.append(data)\n pos = data.pos\n valid = data.isValid()\n value = unicode(data)\n elif isSequence(data) and not isinstance(data, basestring):\n # building from sub parts, must be of the same type and in class _accepts\n # TODO : use yacc own rules for accepts\n if data :\n valid = True\n p = 0\n for arg in data :\n # converts LexTokens directly\n if isinstance(arg, lex.LexToken) :\n a = Token(arg.value, ptype=arg.type, pos=data.pos)\n else :\n a = arg\n # now check if it's a suitable sub-part or derived class\n if isinstance(a, newcls) :\n sub += a.sub\n elif newcls.accepts(a) :\n sub.append(a)\n else :\n valid = False\n break\n value = u\"\".join(map(unicode, data))\n if valid :\n pos = sub[0].pos\n else :\n sub = []\n else :\n value = ''\n else :\n if debug : print \"REPARSE\", data, repr(data)\n # reparse unless it's a Token we already know the type of\n value = unicode(data)\n if issubclass(newcls, Token) and newcls is not Token :\n sub = []\n pos = 0\n valid = True\n else :\n valid = False\n\n # parse if necessary\n if valid :\n # print \"No reparsing necessary for a resulting value %s (%r)\" % (value, value)\n strvalue = unicode(value)\n elif isinstance(value, basestring) :\n if debug :\n print \"%s: Will need to reparse value %r\" % (clsname, value)\n newcls.classparserbuild(debug=debug)\n if debug : print \"VALUE\", value, type(value)\n result = newcls.classparse(value, debug=debug)\n if debug : print \"RESULT\", result, type(result), isinstance(result, newcls)\n if result is not None and isinstance(result, newcls) :\n strvalue = unicode(result)\n valid = result._valid\n sub = result._sub\n pos = result._pos\n if debug : print \"SUB\", sub\n else :\n strvalue = ''\n valid = False\n else :\n raise TypeError, \"invalid argument(s) %r, cannot be parsed to create a Parsed object of type %s\" % (value, clsname)\n\n if valid :\n # create a unicode object with appropriate string value\n newobj = super(Parsed, cls).__new__(newcls)\n newobj._name = strvalue\n #if debug: print \"NAME\", newobj, type(newobj), sub#, inspect.getmro(newobj)\n # set instance attributes\n newobj._sub = tuple(sub)\n newobj._valid = valid\n # override for pos\n pos = kwargs.get('pos', pos)\n if pos is not None :\n pos += kwargs.get('offset', 0)\n\n if pos is None or (isinstance(pos, int) and pos>=0) :\n newobj._pos = pos\n else :\n raise ValueError, \"A Parsed pos can only be None or an unsigned int, %r invalid\" % pos\n\n return newobj", "metadata": "root.Parsed.__new__", "header": "['class', 'Parsed', '(', 'ProxyUni', ')', ':', '___EOS___']", "index": 231 }, { "content": "def isParsedClass (x) :\n try :\n return issubclass(x, Parsed)\n except :\n return False", "metadata": "root.isParsedClass", "header": "['module', '___EOS___']", "index": 634 }, { "content": "def isParserClass (x) :\n try :\n return issubclass(x, Parser)\n except :\n return False", "metadata": "root.isParserClass", "header": "['module', '___EOS___']", "index": 639 } ]

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Except block handles 'BaseException'

zorna/zorna/zorna/forms/api.py

[ { "content": "def isUserManager(request, slug):\n try:\n fw = FormsWorkspace.objects.get(slug=slug)\n ao = get_allowed_objects(request.user, FormsWorkspace, 'manager')\n if fw.pk in ao:\n return fw\n else:\n return False\n except:\n return False", "metadata": "root.isUserManager", "header": "['module', '___EOS___']", "index": 19 }, { "content": "def forms_get_form_edit_entry(request, entry):\n try:\n entry = FormsFormEntry.objects.get(pk=entry)\n form = entry.form\n except:\n return None\n\n rget = request.GET # {'lot.designation': '110'}\n args = (form, request.POST or None, request.FILES or None)\n form_for_form = FormForForm(*args, instance=entry, rget=rget)\n return form_for_form", "metadata": "root.forms_get_form_edit_entry", "header": "['module', '___EOS___']", "index": 68 }, { "content": "def forms_form_browse_entries(request, slug, entries=None):\n try:\n form = FormsForm.objects.select_related(depth=1).get(slug=slug)\n except:\n return None\n\n # dont't verify access, caller must do it for us\n extra_context = {}\n kwargs = {}\n sort = ''\n if entries:\n kwargs['entries'] = entries\n extra_context['filters'] = {}\n extra_context['field_filters'] = []\n form_fields = form.fields.select_related().all().order_by('label')\n form.fields_reference = {}\n hidden = request.GET.get('hidden', '')\n if hidden:\n hidden = hidden.split(',')\n else:\n hidden = []\n for f in form_fields:\n fl = request.GET.get(f.slug, None)\n if fl:\n kwargs[f.slug] = smart_str(fl)\n if f.for_sort:\n sort = f.slug\n if not f.visible_in_list:\n hidden.append(f.slug)\n extra_context['params'] = urllib.urlencode(kwargs)\n\n kwargs['f'] = request.GET.get('f', '')\n kwargs['q'] = request.GET.get('q', '')\n kwargs['o'] = request.GET.get('o', sort)\n kwargs['ot'] = request.GET.get('ot', 'asc')\n kwargs['where'] = request.GET.get('where', '')\n\n extra_context['parents'] = []\n if kwargs['where']:\n try:\n bte = kwargs['where'].split(':')\n extra_context['where_entry_id'] = entry_id = bte[1]\n bte = bte[0].split('.')\n extra_context['where_form_slug'] = form_slug = bte[0]\n extra_context['where_form_field'] = form_field = bte[1]\n while entry_id:\n e = FormsFormEntry.objects.select_related().get(\n pk=entry_id, form__slug=form_slug)\n c, r = forms_get_entry(e)\n extra_context['parents'].append({'row': r[\n form_field], 'entry': e})\n hidden.append(r[form_field]['slug'])\n if not e.form.bind_to_entry:\n break\n bte = e.form.bind_to_entry.split('.')\n form_slug = bte[0]\n form_field = bte[1]\n entry_id = e.entry.pk\n except Exception as e:\n extra_context['parents'] = []\n extra_context['parents'].reverse()\n kwargs['hidden'] = ','.join(hidden)\n\n columns, entries = forms_get_entries(form, **kwargs)\n for f in form_fields:\n if '.' in f.reference and f.is_a(*fields.CHOICES):\n fl = request.GET.get(f.slug, None)\n choices = [('', '--- %s ---' % f.label)]\n for e in form.fields_reference[f.pk]:\n choices.append((e[0], e[1]))\n s = forms.Select(choices=choices)\n extra_context['filters'][f.label] = s.render(f.slug, fl, None)\n else:\n extra_context['field_filters'].append([f.label, f.slug])\n if fl:\n kwargs[f.slug] = fl\n\n paginator = Paginator(entries, 25)\n page = int(request.GET.get('page', 1))\n try:\n rows = paginator.page(page)\n except PageNotAnInteger:\n # If page is not an integer, deliver first page.\n rows = paginator.page(1)\n except EmptyPage:\n # If page is out of range (e.g. 9999), deliver last page of results.\n rows = paginator.page(paginator.num_pages)\n\n extra_context['q'] = kwargs['q']\n extra_context['f'] = kwargs['f']\n extra_context['column_filter'] = kwargs['o']\n extra_context['column_order'] = kwargs['ot']\n extra_context['zorna_title_page'] = _(u'Forms')\n extra_context['form'] = form\n extra_context['columns'] = columns\n extra_context['entries'] = entries\n extra_context['rows'] = rows\n extra_context['page'] = page\n extra_context['paginator'] = paginator\n extra_context['where'] = kwargs['where']\n try:\n r = form.bind_to_entry.split('.')\n extra_context['bind_entry_slug'] = r[0]\n extra_context['bind_entry_field'] = r[1]\n except:\n pass\n\n extra_context['where'] = kwargs['where']\n\n return extra_context", "metadata": "root.forms_form_browse_entries", "header": "['module', '___EOS___']", "index": 117 } ]

[ { "span": "except:", "start_line": 27, "start_column": 4, "end_line": 27, "end_column": 11 }, { "span": "except:", "start_line": 72, "start_column": 4, "end_line": 72, "end_column": 11 }, { "span": "except:", "start_line": 120, "start_column": 4, "end_line": 120, "end_column": 11 }, { "span": "except:", "start_line": 221, "start_column": 4, "end_line": 221, "end_column": 11 } ]

[]

1

true

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Unused import

ardekantur/pyglet/pyglet/input/evdev.py

[ { "content": "#!/usr/bin/env python\n\n'''\n'''\n\n__docformat__ = 'restructuredtext'\n__version__ = '$Id$'\n\nimport ctypes\nimport errno\nimport os\n\nimport pyglet\nfrom pyglet.app.xlib import XlibSelectDevice\nfrom base import Device, Control, RelativeAxis, AbsoluteAxis, Button, Joystick\nfrom base import DeviceOpenException\nfrom evdev_constants import *\nfrom evdev_constants import _rel_raw_names, _abs_raw_names, _key_raw_names\n\nc = pyglet.lib.load_library('c')\n\n_IOC_NRBITS = 8\n_IOC_TYPEBITS = 8\n_IOC_SIZEBITS = 14\n_IOC_DIRBITS = 2\n\n_IOC_NRMASK = ((1 << _IOC_NRBITS)-1)\n_IOC_TYPEMASK = ((1 << _IOC_TYPEBITS)-1)\n_IOC_SIZEMASK = ((1 << _IOC_SIZEBITS)-1)\n_IOC_DIRMASK = ((1 << _IOC_DIRBITS)-1)\n\n_IOC_NRSHIFT = 0\n_IOC_TYPESHIFT = (_IOC_NRSHIFT+_IOC_NRBITS)\n_IOC_SIZESHIFT = (_IOC_TYPESHIFT+_IOC_TYPEBITS)\n_IOC_DIRSHIFT = (_IOC_SIZESHIFT+_IOC_SIZEBITS)\n\n_IOC_NONE = 0\n_IOC_WRITE = 1\n_IOC_READ = 2\n\n\n\n\n\ntime_t = ctypes.c_long\nsuseconds_t = ctypes.c_long\n\n\n\n\n\nEVIOCGVERSION = _IOR('E', 0x01, ctypes.c_int)\nEVIOCGID = _IOR('E', 0x02, input_id)\nEVIOCGNAME = _IOR_str('E', 0x06)\nEVIOCGPHYS = _IOR_str('E', 0x07)\nEVIOCGUNIQ = _IOR_str('E', 0x08)\n\n\n_abs_names = {\n ABS_X: AbsoluteAxis.X,\n ABS_Y: AbsoluteAxis.Y,\n ABS_Z: AbsoluteAxis.Z,\n ABS_RX: AbsoluteAxis.RX,\n ABS_RY: AbsoluteAxis.RY,\n ABS_RZ: AbsoluteAxis.RZ,\n ABS_HAT0X: AbsoluteAxis.HAT_X,\n ABS_HAT0Y: AbsoluteAxis.HAT_Y,\n}\n\n_rel_names = {\n REL_X: RelativeAxis.X,\n REL_Y: RelativeAxis.Y,\n REL_Z: RelativeAxis.Z,\n REL_RX: RelativeAxis.RX,\n REL_RY: RelativeAxis.RY,\n REL_RZ: RelativeAxis.RZ,\n REL_WHEEL: RelativeAxis.WHEEL,\n}\n\n\nevent_types = {\n EV_KEY: KEY_MAX,\n EV_REL: REL_MAX,\n EV_ABS: ABS_MAX,\n EV_MSC: MSC_MAX,\n EV_LED: LED_MAX,\n EV_SND: SND_MAX,\n}\n\n\n_devices = {}\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _IOC(dir, type, nr, size):\n return ((dir << _IOC_DIRSHIFT) |\n (type << _IOC_TYPESHIFT) |\n (nr << _IOC_NRSHIFT) |\n (size << _IOC_SIZESHIFT))", "metadata": "root._IOC", "header": "['module', '___EOS___']", "index": 40 }, { "content": "def _IOR(type, nr, struct):\n request = _IOC(_IOC_READ, ord(type), nr, ctypes.sizeof(struct))\n def f(fileno):\n buffer = struct()\n if c.ioctl(fileno, request, ctypes.byref(buffer)) < 0:\n err = ctypes.c_int.in_dll(c, 'errno').value\n raise OSError(err, errno.errorcode[err])\n return buffer\n return f", "metadata": "root._IOR", "header": "['module', '___EOS___']", "index": 46 }, { "content": "def _IOR_len(type, nr):\n def f(fileno, buffer):\n request = _IOC(_IOC_READ, ord(type), nr, ctypes.sizeof(buffer))\n if c.ioctl(fileno, request, ctypes.byref(buffer)) < 0:\n err = ctypes.c_int.in_dll(c, 'errno').value\n raise OSError(err, errno.errorcode[err])\n return buffer\n return f", "metadata": "root._IOR_len", "header": "['module', '___EOS___']", "index": 56 }, { "content": "def _IOR_str(type, nr):\n g = _IOR_len(type, nr)\n def f(fileno, len=256):\n return g(fileno, ctypes.create_string_buffer(len)).value\n return f", "metadata": "root._IOR_str", "header": "['module', '___EOS___']", "index": 65 }, { "content": "class timeval(ctypes.Structure):\n _fields_ = (\n ('tv_sec', time_t),\n ('tv_usec', suseconds_t)\n )", "metadata": "root.timeval", "header": "['module', '___EOS___']", "index": 74 }, { "content": "class input_event(ctypes.Structure):\n _fields_ = (\n ('time', timeval),\n ('type', ctypes.c_uint16),\n ('code', ctypes.c_uint16),\n ('value', ctypes.c_int32)\n )", "metadata": "root.input_event", "header": "['module', '___EOS___']", "index": 80 }, { "content": "class input_id(ctypes.Structure):\n _fields_ = (\n ('bustype', ctypes.c_uint16),\n ('vendor', ctypes.c_uint16),\n ('product', ctypes.c_uint16),\n ('version', ctypes.c_uint16),\n )", "metadata": "root.input_id", "header": "['module', '___EOS___']", "index": 88 }, { "content": "class input_absinfo(ctypes.Structure):\n _fields_ = (\n ('value', ctypes.c_int32),\n ('minimum', ctypes.c_int32),\n ('maximum', ctypes.c_int32),\n ('fuzz', ctypes.c_int32),\n ('flat', ctypes.c_int32),\n )", "metadata": "root.input_absinfo", "header": "['module', '___EOS___']", "index": 96 }, { "content": "def EVIOCGBIT(fileno, ev, buffer):\n return _IOR_len('E', 0x20 + ev)(fileno, buffer)", "metadata": "root.EVIOCGBIT", "header": "['module', '___EOS___']", "index": 110 }, { "content": "def EVIOCGABS(fileno, abs):\n buffer = input_absinfo()\n return _IOR_len('E', 0x40 + abs)(fileno, buffer)", "metadata": "root.EVIOCGABS", "header": "['module', '___EOS___']", "index": 112 }, { "content": "def get_set_bits(bytes):\n bits = set()\n j = 0\n for byte in bytes:\n for i in range(8):\n if byte & 1:\n bits.add(j + i)\n byte >>= 1\n j += 8\n return bits", "metadata": "root.get_set_bits", "header": "['module', '___EOS___']", "index": 116 }, { "content": "def _create_control(fileno, event_type, event_code):\n if event_type == EV_ABS:\n raw_name = _abs_raw_names.get(event_code, 'EV_ABS(%x)' % event_code)\n name = _abs_names.get(event_code)\n absinfo = EVIOCGABS(fileno, event_code)\n value = absinfo.value\n min = absinfo.minimum\n max = absinfo.maximum\n control = AbsoluteAxis(name, min, max, raw_name)\n control._set_value(value)\n\n if name == 'hat_y':\n control.inverted = True\n elif event_type == EV_REL:\n raw_name = _rel_raw_names.get(event_code, 'EV_REL(%x)' % event_code)\n name = _rel_names.get(event_code)\n # TODO min/max?\n control = RelativeAxis(name, raw_name)\n elif event_type == EV_KEY:\n raw_name = _key_raw_names.get(event_code, 'EV_KEY(%x)' % event_code)\n name = None\n control = Button(name, raw_name)\n else:\n value = min = max = 0 # TODO\n return None\n control._event_type = event_type\n control._event_code = event_code\n return control", "metadata": "root._create_control", "header": "['module', '___EOS___']", "index": 147 }, { "content": "def _create_joystick(device):\n # Look for something with an ABS X and ABS Y axis, and a joystick 0 button\n have_x = False\n have_y = False\n have_button = False\n for control in device.controls:\n if control._event_type == EV_ABS and control._event_code == ABS_X:\n have_x = True\n elif control._event_type == EV_ABS and control._event_code == ABS_Y:\n have_y = True\n elif control._event_type == EV_KEY and \\\n control._event_code == BTN_JOYSTICK:\n have_button = True\n if not (have_x and have_y and have_button):\n return\n\n return Joystick(device)", "metadata": "root._create_joystick", "header": "['module', '___EOS___']", "index": 176 }, { "content": "class EvdevDevice(XlibSelectDevice, Device):\n _fileno = None\n \n\n\n\n\n # XlibSelectDevice interface\n\n\n", "metadata": "root.EvdevDevice", "header": "['module', '___EOS___']", "index": 203 }, { "content": " def __init__(self, display, filename):\n self._filename = filename\n\n fileno = os.open(filename, os.O_RDONLY)\n #event_version = EVIOCGVERSION(fileno).value\n\n id = EVIOCGID(fileno)\n self.id_bustype = id.bustype\n self.id_vendor = hex(id.vendor)\n self.id_product = hex(id.product)\n self.id_version = id.version\n\n name = EVIOCGNAME(fileno)\n try:\n name = name.decode('utf-8')\n except UnicodeDecodeError:\n try:\n name = name.decode('latin-1')\n except UnicodeDecodeError:\n pass\n \n try:\n self.phys = EVIOCGPHYS(fileno)\n except OSError:\n self.phys = ''\n try:\n self.uniq = EVIOCGUNIQ(fileno)\n except OSError:\n self.uniq = ''\n\n self.controls = []\n self.control_map = {}\n\n event_types_bits = (ctypes.c_byte * 4)()\n EVIOCGBIT(fileno, 0, event_types_bits)\n for event_type in get_set_bits(event_types_bits):\n if event_type not in event_types:\n continue\n max_code = event_types[event_type]\n nbytes = max_code // 8 + 1\n event_codes_bits = (ctypes.c_byte * nbytes)()\n EVIOCGBIT(fileno, event_type, event_codes_bits)\n for event_code in get_set_bits(event_codes_bits):\n control = _create_control(fileno, event_type, event_code)\n if control:\n self.control_map[(event_type, event_code)] = control \n self.controls.append(control)\n\n os.close(fileno)\n\n super(EvdevDevice, self).__init__(display, name)", "metadata": "root.EvdevDevice.__init__", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 206 }, { "content": " def open(self, window=None, exclusive=False):\n super(EvdevDevice, self).open(window, exclusive)\n\n try:\n self._fileno = os.open(self._filename, os.O_RDONLY | os.O_NONBLOCK)\n except OSError, e:\n raise DeviceOpenException(e)\n\n pyglet.app.platform_event_loop._select_devices.add(self)", "metadata": "root.EvdevDevice.open", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 258 }, { "content": " def close(self):\n super(EvdevDevice, self).close()\n\n if not self._fileno:\n return\n\n pyglet.app.platform_event_loop._select_devices.remove(self)\n os.close(self._fileno)\n self._fileno = None", "metadata": "root.EvdevDevice.close", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 268 }, { "content": " def get_controls(self):\n return self.controls", "metadata": "root.EvdevDevice.get_controls", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 278 }, { "content": " def fileno(self):\n return self._fileno", "metadata": "root.EvdevDevice.fileno", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 283 }, { "content": " def poll(self):\n # TODO\n return False", "metadata": "root.EvdevDevice.poll", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 286 }, { "content": " def select(self):\n if not self._fileno:\n return\n\n events = (input_event * 64)()\n bytes = c.read(self._fileno, events, ctypes.sizeof(events))\n if bytes < 0:\n return\n\n n_events = bytes // ctypes.sizeof(input_event)\n for event in events[:n_events]:\n try:\n control = self.control_map[(event.type, event.code)]\n control._set_value(event.value)\n except KeyError:\n pass", "metadata": "root.EvdevDevice.select", "header": "['class', 'EvdevDevice', '(', 'XlibSelectDevice', ',', 'Device', ')', ':', '___EOS___']", "index": 290 }, { "content": "def get_devices(display=None):\n base = '/dev/input'\n for filename in os.listdir(base):\n if filename.startswith('event'):\n path = os.path.join(base, filename)\n if path in _devices:\n continue\n\n try:\n _devices[path] = EvdevDevice(display, path)\n except OSError:\n pass \n\n return _devices.values()", "metadata": "root.get_devices", "header": "['module', '___EOS___']", "index": 308 }, { "content": "def get_joysticks(display=None):\n return filter(None, [_create_joystick(d) for d in get_devices(display)])", "metadata": "root.get_joysticks", "header": "['module', '___EOS___']", "index": 323 } ]

[ { "span": "from base import Device, Control, RelativeAxis, AbsoluteAxis, Button, Joystick", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 78 } ]

[]

1

false

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

First parameter of a method is not named 'self'

rcbops/glance-buildpackage/glance/tests/functional/test_cache_middleware.py

[ { "content": " def do_HEAD(s):\n \"\"\"\n Respond to an image HEAD request fake metadata\n \"\"\"\n if 'images' in s.path:\n s.send_response(200)\n s.send_header('Content-Type', 'application/octet-stream')\n s.send_header('Content-Length', FIVE_KB)\n s.end_headers()\n return\n else:\n self.send_error(404, 'File Not Found: %s' % self.path)\n return", "metadata": "root.RemoteImageHandler.do_HEAD", "header": "['class', 'RemoteImageHandler', '(', 'BaseHTTPServer', '.', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']", "index": 44 }, { "content": " def do_GET(s):\n \"\"\"\n Respond to an image GET request with fake image content.\n \"\"\"\n if 'images' in s.path:\n s.send_response(200)\n s.send_header('Content-Type', 'application/octet-stream')\n s.send_header('Content-Length', FIVE_KB)\n s.end_headers()\n image_data = '*' * FIVE_KB\n s.wfile.write(image_data)\n self.wfile.close()\n return\n else:\n self.send_error(404, 'File Not Found: %s' % self.path)\n return", "metadata": "root.RemoteImageHandler.do_GET", "header": "['class', 'RemoteImageHandler', '(', 'BaseHTTPServer', '.', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']", "index": 58 } ]

[ { "span": "def do_HEAD(s):", "start_line": 44, "start_column": 4, "end_line": 44, "end_column": 19 }, { "span": "def do_GET(s):", "start_line": 58, "start_column": 4, "end_line": 58, "end_column": 18 } ]

[]

1

true

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Unused import

kleientertainment/ds_mod_tools/pkg/win32/mod_tools/exported/export.py

[ { "content": "import sys, os, argparse, glob\nimport xml.etree.ElementTree as ET\nimport ResizeInfo, ExportOptions\nfrom klei import util\nimport subprocess\n\nSCRIPT_DIR = os.path.dirname( __file__ )\n\nsys.path.append( SCRIPT_DIR )\n\n\n\n \n\n\nif __name__ == \"__main__\":\n CWD = os.getcwd()\n\n # Now do the export\n parser = argparse.ArgumentParser( description = \"Animation batch exporter script\" )\n parser.add_argument( '--platform', default='opengl' )\n parser.add_argument( '--textureformat', default='bc3' )\n parser.add_argument( '--hardalphatextureformat', default='bc1' )\n parser.add_argument( '--force', action='store_true' )\n parser.add_argument( '--square', action='store_true' )\n parser.add_argument( '--ignoreexceptions', action='store_true' )\n parser.add_argument( 'anims', type=str, nargs='?', help=\"List of anim filenames to be exported\" )\n parser.add_argument( '--outputdir', default='data' )\n parser.add_argument( '--prefabsdir', default='' )\n parser.add_argument( '--skip_update_prefabs', action='store_true' )\n args = parser.parse_args()\n\n if len( args.prefabsdir ) == 0:\n args.prefabsdir = os.path.join( SCRIPT_DIR, \"..\", args.outputdir )\n\n prefabs_file = os.path.abspath( os.path.normpath( os.path.join( CWD, args.prefabsdir, \"prefabs.xml\" ) ) )\n prefabs = Prefabs( prefabs_file )\n anims = []\n if args.anims:\n anims = [ args.anims ]\n else:\n anims = [ os.path.basename( anim.File ) for anim in prefabs.GetAssetType( \"anim\" ) ]\n\n # sorted, unique anims\n anims = sorted( set( anims ) )\n anims = [ ( anim, prefabs, args ) for anim in anims ]\n\n from multiprocessing import Pool\n pool = Pool(processes=1)\n pool.map( ConvertAnim, anims )\n\n # Ensure that the prefabs.xml file is up to date\n if not args.skip_update_prefabs:\n os.chdir( os.path.join( SCRIPT_DIR, \"..\" ) )\n os.system( ' '.join( ( 'updateprefabs.bat', args.outputdir ) ) )\n\n os.chdir( CWD )\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Asset:", "metadata": "root.Asset", "header": "['module', '___EOS___']", "index": 10 }, { "content": " def __init__( self, filename, asset_type ):\n self.File = filename\n self.Type = asset_type", "metadata": "root.Asset.__init__", "header": "['class', 'Asset', ':', '___EOS___']", "index": 11 }, { "content": "class Prefab:", "metadata": "root.Prefab", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def __init__( self, name, assets = [] ):\n self.Name = name\n self.Assets = assets", "metadata": "root.Prefab.__init__", "header": "['class', 'Prefab', ':', '___EOS___']", "index": 16 }, { "content": "class Prefabs:\n\n\n", "metadata": "root.Prefabs", "header": "['module', '___EOS___']", "index": 20 }, { "content": " def __init__( self, filename ):\n self.Prefabs = self.ParsePrefabs( filename )", "metadata": "root.Prefabs.__init__", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 21 }, { "content": " def GetAssetType( self, asset_type ):\n asset_type = asset_type.upper()\n assets = []\n \n for prefab in self.Prefabs:\n for asset in prefab.Assets:\n if asset.Type == asset_type:\n assets.append( asset )\n\n return assets", "metadata": "root.Prefabs.GetAssetType", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 24 }, { "content": " def ParsePrefabs( self, filename ):\n tree = ET.parse( filename )\n prefabs = tree.findall( \"Defs/Prefab\" )\n\n prefab_list = []\n for prefab in prefabs:\n name = prefab.attrib[ 'name' ]\n assets = [ Asset( asset.attrib[ 'file' ], asset.attrib[ 'type' ].upper() ) for asset in prefab.findall( \"Assets/Asset\" ) ]\n prefab_list.append( Prefab( name, assets ) )\n\n return prefab_list", "metadata": "root.Prefabs.ParsePrefabs", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 35 }, { "content": " def GetOwner( self, asset_filename ):\n for prefab in self.Prefabs:\n for asset in prefab.Assets:\n if os.path.basename( asset.File ) == asset_filename:\n return prefab\n return None", "metadata": "root.Prefabs.GetOwner", "header": "['class', 'Prefabs', ':', '___EOS___']", "index": 47 }, { "content": "def ConvertAnim(params):\n anim, prefabs, args = params\n anim_path = anim\n\n anim = os.path.basename(anim.strip())\n prefab_owner = prefabs.GetOwner( anim )\n scale = ResizeInfo.DefaultSize()\n if prefab_owner:\n scale = ResizeInfo.SizeMap[ prefab_owner.Name ]\n #print (prefab_owner.Name, scale)\n\n # Filename scaling overrides general prefab settings\n anim_filename = os.path.basename( anim )\n anim_name, ext = os.path.splitext( anim_filename )\n keys_to_try = [ anim, anim_filename, anim_name ]\n for key in keys_to_try:\n scale = ResizeInfo.SizeMap.get( key, scale )\n\n additional_options = ExportOptions.Options.get( anim_name, [] )\n cmd_args = [\n os.path.join( SCRIPT_DIR, r\"..\\buildtools\\windows\\python27\\python.exe\" ),\n os.path.join( SCRIPT_DIR, r\"..\\tools\\scripts\\buildanimation.py\" ),\n \"--scale=\" + str( scale )\n ]\n \n additional_args = ( 'platform', 'textureformat', 'hardalphatextureformat' )\n for arg in additional_args:\n try:\n val = getattr( args, arg )\n cmd_args.append( '--{}={}'.format( arg, val ) )\n except:\n pass\n\n additional_flags = ( 'force', 'square', 'ignoreexceptions' )\n for flag in additional_flags:\n try:\n val = getattr( args, flag )\n if val:\n cmd_args.append( '--' + flag )\n except:\n pass\n\n os.chdir( SCRIPT_DIR )\n\n src_file = anim_path \n anim_dir = os.path.normpath( os.path.join(\"..\", args.outputdir, \"anim\"))\n if not os.path.exists(anim_dir):\n os.makedirs(anim_dir)\n dest_file = os.path.join(anim_dir, anim)\n\n if args.force or util.IsFileNewer( src_file, dest_file ):\n cmd_args += additional_options\n cmd_args.append( src_file )\n cmd_args.append( '--outputdir=' + args.outputdir )\n\n print( '\\tExporting ' + anim )\n return subprocess.call(cmd_args)\n else:\n return 0", "metadata": "root.ConvertAnim", "header": "['module', '___EOS___']", "index": 55 } ]

[ { "span": "import sys, os, argparse, glob", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 30 } ]

[]

1

false

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Unused local variable

anandology/pyjamas/pyjs/src/pyjs/linker.py

[ { "content": "def module_path(name, path):\n global _path_cache\n candidates = []\n packages = {}\n modules = {}\n if name.endswith('.js'):\n parts = [name]\n else:\n parts = name.split('.')\n if not name in _path_cache:\n _path_cache[name] = {}\n for p in path:\n if p in _path_cache[name]:\n if _path_cache[name][p] is None:\n continue\n return _path_cache[name][p]\n tail = []\n for pn in parts:\n tail.append(pn)\n mn = '.'.join(tail)\n cp = os.path.join(*([p] + tail))\n if mn in _path_cache:\n cache = _path_cache[mn]\n else:\n cache = {}\n _path_cache[mn] = cache\n if p in cache:\n if cache[p] is None:\n break\n elif os.path.isdir(cp) and os.path.exists(\n os.path.join(cp, '__init__.py')):\n cache[p] = os.path.join(cp, '__init__.py')\n elif os.path.exists(cp + '.py'):\n cache[p] = cp + '.py'\n elif pn.endswith('.js') and os.path.exists(cp):\n cache[p] = cp\n else:\n cache[p] = None\n if p in _path_cache[name] and not _path_cache[name][p] is None:\n return _path_cache[name][p]\n _path_cache[name][p] = None\n \n return None\n raise RuntimeError, \"Module %r not found\" % name", "metadata": "root.module_path", "header": "['module', '___EOS___']", "index": 158 } ]

[ { "span": "candidates ", "start_line": 160, "start_column": 4, "end_line": 160, "end_column": 14 }, { "span": "packages ", "start_line": 161, "start_column": 4, "end_line": 161, "end_column": 12 }, { "span": "modules ", "start_line": 162, "start_column": 4, "end_line": 162, "end_column": 11 } ]

[]

1

true

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Unused import

adobe/brackets-shell/gyp/pylib/gyp/generator/ninja_test.py

[ { "content": "#!/usr/bin/env python\n\n# Copyright (c) 2012 Google Inc. All rights reserved.\n# Use of this source code is governed by a BSD-style license that can be\n# found in the LICENSE file.\n\n\"\"\" Unit tests for the ninja.py file. \"\"\"\n\nimport gyp.generator.ninja as ninja\nimport unittest\nimport StringIO\nimport sys\nimport TestCommon\n\n\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestPrefixesAndSuffixes(unittest.TestCase):\n if sys.platform in ('win32', 'cygwin'):\n\n if sys.platform == 'linux2':", "metadata": "root.TestPrefixesAndSuffixes", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def test_BinaryNamesWindows(self):\n writer = ninja.NinjaWriter('foo', 'wee', '.', '.', 'ninja.build', 'win')\n spec = { 'target_name': 'wee' }\n self.assertTrue(writer.ComputeOutputFileName(spec, 'executable').\n endswith('.exe'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'shared_library').\n endswith('.dll'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'static_library').\n endswith('.lib'))", "metadata": "root.TestPrefixesAndSuffixes.test_BinaryNamesWindows", "header": "['class', 'TestPrefixesAndSuffixes', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 17 }, { "content": " def test_BinaryNamesLinux(self):\n writer = ninja.NinjaWriter('foo', 'wee', '.', '.', 'ninja.build', 'linux')\n spec = { 'target_name': 'wee' }\n self.assertTrue('.' not in writer.ComputeOutputFileName(spec,\n 'executable'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'shared_library').\n startswith('lib'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'static_library').\n startswith('lib'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'shared_library').\n endswith('.so'))\n self.assertTrue(writer.ComputeOutputFileName(spec, 'static_library').\n endswith('.a'))", "metadata": "root.TestPrefixesAndSuffixes.test_BinaryNamesLinux", "header": "['class', 'TestPrefixesAndSuffixes', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 28 } ]

[ { "span": "import StringIO", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 15 }, { "span": "import TestCommon", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 17 } ]

[]

1

false

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Unused local variable

mozilla/inventory/api_v2/reverse_dns_handler.py

[ { "content": " def read(self, request, reverse_dns_zone=None, reverse_dns_action=None):\n if reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones':\n tasks = []\n for task in ScheduledTask.objects.get_all_reverse_dns():\n tasks.append(task.task)\n #ScheduledTask.objects.delete_all_reverse_dns()\n return tasks\n elif reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones_with_names':\n truths = Truth.objects.select_related().filter(keyvalue__key='is_reverse_dns_zone',keyvalue__value='True')\n truth_list = []\n for t in truths:\n truth_list.append({'name':t.name.strip(),'description':t.description.strip()})\n return truth_list\n elif reverse_dns_zone and reverse_dns_action == 'view_hosts':\n scope_options = []\n client = Client()\n hosts = json.loads(client.get('/api/keyvalue/?key_type=system_by_zone&zone=%s' % reverse_dns_zone, follow=True).content)\n #print hosts\n adapter_list = []\n for host in hosts:\n if 'hostname' in host:\n the_url = '/api/keyvalue/?key_type=adapters_by_system_and_zone&reverse_dns_zone=%s&system=%s' % (reverse_dns_zone, host['hostname'])\n try:\n adapter_list.append(json.loads(client.get(the_url, follow=True).content))\n except:\n pass\n #d = DHCPInterface(scope_options, adapter_list)\n #return d.get_hosts()\n return None\n else:\n resp = rc.NOT_FOUND\n resp.write(\"I'm sorry but I don't understand your request\")", "metadata": "root.ReverseDNSHandler.read", "header": "['class', 'ReverseDNSHandler', '(', 'BaseHandler', ')', ':', '___EOS___']", "index": 17 } ]

[ { "span": "scope_options ", "start_line": 31, "start_column": 12, "end_line": 31, "end_column": 25 } ]

[]

1

true

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Unused import

kivy/python-for-android/pythonforandroid/recipes/zope_interface/__init__.py

[ { "content": "\nfrom pythonforandroid.toolchain import PythonRecipe, shprint, current_directory\nfrom os.path import join\nimport sh\n\n\n\nrecipe = ZopeInterfaceRecipe()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ZopeInterfaceRecipe(PythonRecipe):\n name = 'zope_interface'\n version = '4.1.2'\n url = 'https://pypi.python.org/packages/source/z/zope.interface/zope.interface-{version}.tar.gz'\n site_packages_name = 'zope.interface'\n\n depends = ['python2']\n", "metadata": "root.ZopeInterfaceRecipe", "header": "['module', '___EOS___']", "index": 6 }, { "content": " def build_arch(self, arch):\n super(ZopeInterfaceRecipe, self).build_arch(arch)\n print('Should remove zope tests etc. here, but skipping for now')", "metadata": "root.ZopeInterfaceRecipe.build_arch", "header": "['class', 'ZopeInterfaceRecipe', '(', 'PythonRecipe', ')', ':', '___EOS___']", "index": 14 } ]

[ { "span": "from pythonforandroid.toolchain import PythonRecipe, shprint, current_directory", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 79 }, { "span": "from os.path import join", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 24 }, { "span": "import sh", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 9 } ]

[]

1

false

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Unused local variable

OrbitzWorldwide/droned/droned/lib/droned/responders/core.py

[ { "content": "@responder(pattern=\"^@(?P<command>.+)\", context_key='server', form=\"@<command>\", help=\"Run a droned command on the current server\")\[email protected]\ndef droneblast(conversation, command):\n server = conversation.context.get('server')\n response = None\n d = None\n try:\n if not isinstance(server, Server):\n conversation.say('On what <b>server</b>?')\n raise AssertionError('incomplete converation context')\n\n options = {}\n if 'timeout' in conversation.context:\n options['timeout'] = conversation.context['timeout']\n\n try:\n conversation.say(\"Running droned command...\")\n d = server.manager.run(command, **options)\n deferreds = conversation.context.get('deferreds', [])\n deferreds.append(d)\n conversation.context.update({'deferreds': deferreds})\n wfd = defer.waitForDeferred(d)\n yield wfd\n result = wfd.getResult()\n except:\n failure = Failure()\n if failure.check(DroneCommandFailed):\n rc = failure.value.resultContext\n conversation.say(rc.get('description') or str(rc), useHTML=False)\n else:\n conversation.say(failure.getTraceback(), useHTML=False)\n else:\n if isinstance(result, dict):\n output = result.values()[0].get('description', str(result))\n else:\n output = str(result)\n deferreds = conversation.context.get('deferreds', [])\n try: deferreds.remove(d)\n except: pass\n conversation.context.update({'deferreds': deferreds})\n conversation.say(\"Command completed\\n%s\" % output, useHTML=False)\n except AssertionError: pass\n except:\n result = Failure()\n yield result", "metadata": "root.droneblast", "header": "['module', '___EOS___']", "index": 73 } ]

[ { "span": "response ", "start_line": 77, "start_column": 4, "end_line": 77, "end_column": 12 } ]

[]

1

true

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"\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "isinstance_", "(_", "result_", ",_", "dict_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "output_", "=_", "result_", "._", "values_", "(_", ")_", "[_", "0_", "]_", "._", "get_", "(_", "'", "description", "'_", ",_", "str_", "(_", "result_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "output_", "=_", "str_", "(_", "result_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "defer", "reds", "_", "=_", "conversation_", "._", "context_", "._", "get_", "(_", "'", "defer", "reds", "'_", ",_", "[_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "try_", ":_", "defer", "reds", "_", "._", "remove_", "(_", "d_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "except_", ":_", "pass_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "conversation_", "._", 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Testing equality to None

VisTrails/VisTrails/contrib/NumSciPy/ArrayPlot.py

[ { "content": " def get_label(self, ar, i):\n lab = ar.get_name(i)\n if lab == None:\n return 'Array ' + str(i)\n else:\n return lab", "metadata": "root.ArrayPlot.get_label", "header": "['class', 'ArrayPlot', '(', 'object', ')', ':', '___EOS___']", "index": 14 }, { "content": " def get_color(self, colors, i, randomcolor):\n if randomcolor:\n return (random.random(), random.random(), random.random())\n\n if self.color_dict == None:\n self.color_dict = {}\n for (k,r,g,b) in colors:\n self.color_dict[k] = (r,g,b)\n\n if self.color_dict.has_key(i):\n return self.color_dict[i]\n else:\n return None", "metadata": "root.ArrayPlot.get_color", "header": "['class', 'ArrayPlot', '(', 'object', ')', ':', '___EOS___']", "index": 24 }, { "content": " def get_marker(self, markers, i):\n if markers == None:\n return None\n\n if self.marker_dict == None:\n self.marker_dict = {}\n for (k,m) in markers:\n self.marker_dict[k] = m\n\n if self.marker_dict.has_key(i):\n return self.marker_dict[i]\n else:\n return None", "metadata": "root.ArrayPlot.get_marker", "header": "['class', 'ArrayPlot', '(', 'object', ')', ':', '___EOS___']", "index": 38 }, { "content": " def compute(self):\n data = self.get_input(\"Data Array\")\n da_ar = data.get_array().squeeze()\n if da_ar.ndim != 2:\n raise ModuleError(\"Input Data Array must have dimension = 2\")\n\n aspect_ratio = self.force_get_input(\"Aspect Ratio\")\n colormap = self.force_get_input(\"Colormap\")\n colorbar = self.force_get_input(\"Colorbar\")\n extents = self.force_get_input(\"Extents\")\n\n # Quickly check the assigned colormap to make sure it's valid\n if colormap == None:\n colormap = \"jet\"\n if not hasattr(pylab, colormap):\n colormap = \"jet\"\n \n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n \n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n\n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n s += 'imshow(da_ar, interpolation=\\'bicubic\\''\n if aspect_ratio != None:\n s += ', aspect=' + str(aspect_ratio)\n\n if extents != None:\n s += ', extent=['+str(extents[0])+','+str(extents[1])+','+str(extents[2])+','+str(extents[3])+']'\n s += ')\\n'\n\n s += colormap + '()\\n'\n\n if colorbar:\n s += 'colorbar()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data.get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output('source', s)", "metadata": "root.ArrayImage.compute", "header": "['class', 'ArrayImage', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 65 }, { "content": " def compute(self):\n data = self.get_input_list(\"Data Array\")\n self.label_dict = None\n self.color_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n nbins = self.force_get_input(\"Bins\")\n if nbins == None:\n nbins = 10\n normed = self.force_get_input(\"Normalize\")\n if normed == None:\n normed = False\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n data_list = []\n for i in data:\n data_list.append(i.get_array().squeeze())\n\n da_ar = None\n try:\n da_ar = numpy.array(data_list)\n except:\n raise ModuleException(\"Not all Data Array inputs are the same size!\")\n\n for i in range(da_ar.shape[0]):\n lab = self.get_label(data[i], i)\n col = self.get_color(colors, i, randomcolors)\n\n s += 'hist(da_ar['+str(i)+',:], bins=' + str(nbins)\n \n if lab != None:\n s += ', label=\\'' + lab + '\\''\n if col != None:\n s += ', facecolor=' + str(col)\n\n s += ', normed='+str(normed)\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data[0].get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'Histogram Value\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output(\"source\", s) ", "metadata": "root.Histogram.compute", "header": "['class', 'Histogram', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 162 }, { "content": " def compute(self):\n data = self.get_input_list(\"Data\")\n errs = self.force_get_input_list(\"Error Bars\")\n if len(errs) == 0:\n errs = None\n\n self.label_dict = None\n self.color_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n ticks = self.force_get_input_list(\"Bar Labels\")\n self.tick_dict = {}\n for (k,v) in ticks:\n self.tick_dict[k] = v\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n\n width = self.force_get_input(\"Bar Width\")\n if width == None:\n width = 0.5\n\n if errs != None:\n if len(data) != len(errs):\n raise ModuleError(\"Number of data does not match number of error bar data\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n numpts = None\n ind = None\n prev = None\n ind = numpy.arange(data[0].get_array().flatten().shape[0])\n t = self.get_ticks(data[0].get_array().flatten().shape[0])\n ag_ar = numpy.zeros((len(data), data[0].get_array().flatten().shape[0]))\n for i in range(len(data)):\n da_ar = data[i].get_array().flatten()\n ag_ar[i,:] = da_ar\n\n er_ar = numpy.zeros((len(data), data[0].get_array().flatten().shape[0]))\n if errs != None:\n for i in range(len(data)):\n er_ar[i,:] = errs[i].get_array().flatten()\n \n for i in range(ag_ar.shape[0]):\n s += 'bar(ind, ag_ar[' + str(i) + ',:], width'\n lab = self.get_label(data[i], i)\n col = self.get_color(colors, i, randomcolors)\n if lab != None:\n s += ', label=\\'' + lab + '\\''\n if col != None:\n s += ', color=' + str(col)\n\n if errs != None:\n s += ', yerr=er_ar[' + str(i) + ',:]'\n\n if prev != None:\n s += ', bottom=ag_ar[' + str(i-1) + ',:]'\n\n s += ')\\n'\n prev = ag_ar[i]\n \n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data[0].get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data[0].get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n s += 'xticks(ind + width/2., t)\\n'\n exec s\n self.set_output(\"source\", s)", "metadata": "root.BarChart.compute", "header": "['class', 'BarChart', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 276 }, { "content": " def compute(self):\n xdata = self.get_input_list(\"X Array\")\n ydata = self.get_input_list(\"Y Array\")\n self.label_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n self.color_dict = None\n bg_color = self.force_get_input(\"Background\")\n markers = self.force_get_input_list(\"Markers\")\n self.marker_dict = None\n ps = self.force_get_input(\"Point Size\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n if len(xdata) != len(ydata):\n raise ModuleError(\"Cannot create scatter plot for different number of X and Y datasets.\")\n\n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n xdata_ar = numpy.zeros((len(xdata), xdata[0].get_array().flatten().shape[0]))\n ydata_ar = numpy.zeros((len(xdata), xdata[0].get_array().flatten().shape[0]))\n\n for i in range(len(xdata)):\n xd = xdata[i]\n yd = ydata[i]\n xdata_ar[i,:] = xd.get_array().flatten()\n ydata_ar[i,:] = yd.get_array().flatten()\n \n for i in range(len(xdata)):\n xar = xdata[i]\n yar = ydata[i]\n\n lab = self.get_label(xar, i)\n col = self.get_color(colors, i, randomcolors)\n mar = self.get_marker(markers, i)\n\n s += 'scatter(xdata_ar[' + str(i) +',:], ydata_ar[' + str(i) + ',:]'\n \n if lab != None:\n s += ', label=\\'' + lab +'\\''\n if col != None:\n s += ', color=' + str(col)\n if mar != None:\n s += ', marker=\\'' + mar + '\\''\n if ps != None:\n s += ', size=' + str(ps)\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + xar.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + yar.get_domain_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n print s\n exec s\n self.set_output(\"source\", s)", "metadata": "root.ScatterPlot.compute", "header": "['class', 'ScatterPlot', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 404 }, { "content": " def compute(self):\n data = self.get_input(\"Input Array\")\n indexes = self.force_get_input(\"Indexes\")\n self.label_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n self.color_dict = None\n markers = self.force_get_input_list(\"Markers\")\n self.marker_dict = None\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n p_title = self.force_get_input(\"Title\")\n bg_color = self.force_get_input(\"Background\")\n\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n da_ar = data.get_array()\n\n if da_ar.ndim > 2:\n raise ModuleError(\"Cannot plot data with dimensions > 2\")\n \n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n \n if da_ar.ndim == 1:\n da_ar.shape = (1, da_ar.shape[0])\n\n xar = self.force_get_input(\"X Values\")\n sf = self.force_get_input(\"Scaling Factor\")\n if sf == None:\n sf = 1.\n\n if xar == None:\n start_i = None\n end_i = None\n if indexes == None:\n start_i = 0\n end_i = da_ar.shape[1]\n else:\n start_i = indexes[0]\n end_i = indexes[1]\n\n xar = numpy.arange(start_i, end_i)\n xar = xar * sf\n else:\n xar = xar.get_array()\n \n print da_ar.shape\n print xar.shape\n for i in range(da_ar.shape[0]):\n lab = self.get_label(data, i)\n col = self.get_color(colors, i, randomcolors)\n mar = self.get_marker(markers, i)\n if indexes == None:\n s += 'plot(xar, da_ar[' + str(i) + ',:]'\n else:\n s += 'plot(xar, da_ar[' + str(i) + ',' + str(indexes[0]) + ':' + str(indexes[1]) + ']'\n \n if lab != None:\n s += ', label=\\'' + lab +'\\''\n if col != None:\n s += ', color=' + str(col)\n if mar != None:\n s += ', marker=\\'' + mar + '\\''\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data.get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output(\"source\", s)", "metadata": "root.LinePlot.compute", "header": "['class', 'LinePlot', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 518 } ]

[ { "span": "lab == None:", "start_line": 16, "start_column": 11, "end_line": 16, "end_column": 22 }, { "span": "self.color_dict == None:", "start_line": 28, "start_column": 11, "end_line": 28, "end_column": 34 }, { "span": "markers == None:", "start_line": 39, "start_column": 11, "end_line": 39, "end_column": 26 }, { "span": "self.marker_dict == None:", "start_line": 42, "start_column": 11, "end_line": 42, "end_column": 35 }, { "span": "colormap == None:", "start_line": 77, "start_column": 11, "end_line": 77, "end_column": 27 }, { "span": "bg_color == None:", "start_line": 96, "start_column": 11, "end_line": 96, "end_column": 27 }, { "span": "nbins == None:", "start_line": 175, "start_column": 11, "end_line": 175, "end_column": 24 }, { "span": "normed == None:", "start_line": 178, "start_column": 11, "end_line": 178, "end_column": 25 }, { "span": "bg_color == None:", "start_line": 188, "start_column": 11, "end_line": 188, "end_column": 27 }, { "span": "width == None:", "start_line": 299, "start_column": 11, "end_line": 299, "end_column": 24 }, { "span": "bg_color == None:", "start_line": 313, "start_column": 11, "end_line": 313, "end_column": 27 }, { "span": "bg_color == None:", "start_line": 433, "start_column": 11, "end_line": 433, "end_column": 27 }, { "span": "bg_color == None:", "start_line": 547, "start_column": 11, "end_line": 547, "end_column": 27 }, { "span": "sf == None:", "start_line": 560, "start_column": 11, "end_line": 560, "end_column": 21 }, { "span": "xar == None:", "start_line": 563, "start_column": 11, "end_line": 563, "end_column": 22 }, { "span": "indexes == None:", "start_line": 566, "start_column": 15, "end_line": 566, "end_column": 30 }, { "span": "indexes == None:", "start_line": 584, "start_column": 15, "end_line": 584, "end_column": 30 } ]

[]

1

true

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Unused local variable

bottlepy/bottle/test/test_mount.py

[ { "content": " def test_mount_wsgi(self):\n status = {}\n def app(environ, start_response):\n start_response('200 OK', [('X-Test', 'WSGI')])\n return 'WSGI ' + environ['PATH_INFO']\n self.app.mount('/test', app)\n self.assertStatus(200, '/test/')\n self.assertBody('WSGI /', '/test')\n self.assertBody('WSGI /', '/test/')\n self.assertHeader('X-Test', 'WSGI', '/test/')\n self.assertBody('WSGI /test/bar', '/test/test/bar')", "metadata": "root.TestAppMounting.test_mount_wsgi", "header": "['class', 'TestAppMounting', '(', 'ServerTestBase', ')', ':', '___EOS___']", "index": 61 }, { "content": " def test_mount_wsgi_ctype_bug(self):\n status = {}\n def app(environ, start_response):\n start_response('200 OK', [('Content-Type', 'test/test')])\n return 'WSGI ' + environ['PATH_INFO']\n self.app.mount('/test', app)\n self.assertHeader('Content-Type', 'test/test', '/test/')", "metadata": "root.TestAppMounting.test_mount_wsgi_ctype_bug", "header": "['class', 'TestAppMounting', '(', 'ServerTestBase', ')', ':', '___EOS___']", "index": 82 } ]

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[]

1

true

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Unused local variable

xumiao/pymonk/examples/exper.py

[ { "content": "def readModel(filename):\n userFactors = None\n itemFactors = None\n with open(filename) as f:\n modelname = readline(f)\n version = readline(f)\n globalbias = float(readline(f))\n minRate = int(readline(f))\n maxRate = int(readline(f))\n userBias = readVector(f)\n userFactors = readMatrix(f)\n itemBias = readVector(f)\n itemFactors = readMatrix(f)\n return userFactors, itemFactors", "metadata": "root.readModel", "header": "['module', '___EOS___']", "index": 36 } ]

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[]

1

true

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Variable defined multiple times

XiaoMi/minos/owl/collector/management/commands/metrics_updater.py

[ { "content": "def analyze_hbase_master_metrics(metric_task, metrics):\n cluster = metric_task.job.cluster\n hbase_cluster_record, created = HBaseCluster.objects.get_or_create(cluster=cluster)\n reset_aggregated_metrics(hbase_cluster_record)\n tables = {}\n region_record_need_save = []\n for bean in metrics['beans']:\n try:\n if 'RegionServers' not in bean:\n continue\n for rs_metrics in bean['RegionServers']:\n rs_name = rs_metrics['key']\n [rs_hostname, rs_port] = get_host_and_port_from_region_server_name(rs_name)\n rs_task = dbutil.get_task_by_host_and_port(rs_hostname, rs_port)\n rs_record, created = RegionServer.objects.get_or_create(cluster = cluster,\n task = rs_task)\n # region server name includes startTime, which means the same region server\n # will lead different RegionServer records if the region server restarts.\n # Therefore, we won't create region server by its name.\n rs_record.name = rs_name\n\n rs_value = rs_metrics['value']\n rs_record.last_attempt_time = metric_task.last_attempt_time\n rs_record.load = int(rs_value['load'])\n rs_record.numberOfRegions = int(rs_value['numberOfRegions'])\n reset_aggregated_metrics(rs_record)\n\n # we read out all regions belong to this region server and build a map\n all_regions_in_rs = Region.objects.filter(region_server = rs_record)\n all_regions_in_rs = dbutil.get_alive_regions_by_rs(rs_record)\n all_regions_map = {}\n logger.info(\"%r Finish get region: %d\", metric_task, len(all_regions_in_rs))\n for region in all_regions_in_rs:\n all_regions_map[region.name] = region\n\n regionsLoad = rs_value['regionsLoad']\n for region_metrics in regionsLoad:\n region_value = region_metrics['value']\n region_name = region_value['nameAsString']\n try:\n table_name = region_name.split(',')[0]\n except Exception as e:\n logger.warning(\"%r failed to get region name: %r, %s\",\n metric_task, e, region_name)\n continue\n\n region_metrics = {}\n\n if table_name not in tables:\n table_record, created = Table.objects.get_or_create(cluster = cluster,\n name = table_name)\n reset_aggregated_metrics(table_record)\n tables[table_name] = table_record\n\n table_record = tables[table_name]\n\n region_record = None\n if region_name in all_regions_map:\n region_record = all_regions_map[region_name]\n else:\n # if region record not in buffer, we get_or_create from db\n begin = datetime.datetime.now()\n region_record, created = Region.objects.get_or_create(table = table_record,\n name = region_name, encodeName = Region.get_encode_name(region_name),\n defaults={\"region_server\":rs_record})\n logger.info(\"%r get_or_create region in region_server from mysql, \" \\\n \"consume=%s, region_name=%s, buffered_rs=%s, get_rs=%s\",\n metric_task, str((datetime.datetime.now() - begin).total_seconds()),\n region_name, rs_record.name, region_record.region_server.name)\n\n\n logger.info(\"%r Finish analyze regionsLoad\", metric_task)\n\n region_record.region_server = rs_record\n region_record.analyze_region_record(region_value,\n metric_task.last_attempt_time)\n # we buffer the regions needed update for batch update\n region_record_need_save.append(region_record)\n aggregate_metrics(region_record, rs_record)\n aggregate_metrics(region_record, table_record)\n aggregate_metrics(region_record, hbase_cluster_record)\n\n rs_record.save()\n\n for table_record in tables.itervalues():\n table_record.last_attempt_time = metric_task.last_attempt_time\n table_record.availability = dbutil.getTableAvailability(\n table_record.cluster.name, table_record.name)\n table_record.save()\n\n hbase_cluster_record.save()\n\n # do batch update\n begin = datetime.datetime.now()\n dbutil.update_regions_for_master_metrics(region_record_need_save)\n logger.info(\"%r batch save region record for master, \" \\\n \"saved regions=%d, consume=%s\",\n metric_task, len(region_record_need_save),\n str((datetime.datetime.now() - begin).total_seconds()))\n except Exception as e:\n traceback.print_exc()\n logger.warning(\"%r failed to analyze metrics: %r\", metric_task, e)\n continue", "metadata": "root.analyze_hbase_master_metrics", "header": "['module', '___EOS___']", "index": 126 } ]

[ { "span": "all_regions_in_rs ", "start_line": 154, "start_column": 8, "end_line": 154, "end_column": 25 } ]

[ { "span": "all_regions_in_rs ", "start_line": 155, "start_column": 8, "end_line": 155, "end_column": 25 } ]

1

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Unused import

cloudera/hue/desktop/core/ext-py/Django-1.6.10/django/db/utils.py

[ { "content": "from functools import wraps\nimport os\nimport pkgutil\nfrom threading import local\nimport warnings\n\nfrom django.conf import settings\nfrom django.core.exceptions import ImproperlyConfigured\nfrom django.utils.functional import cached_property\nfrom django.utils.importlib import import_module\nfrom django.utils.module_loading import import_by_path\nfrom django.utils._os import upath\nfrom django.utils import six\n\n\nDEFAULT_DB_ALIAS = 'default'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Error(Exception if six.PY3 else StandardError):\n pass", "metadata": "root.Error", "header": "['module', '___EOS___']", "index": 18 }, { "content": "class InterfaceError(Error):\n pass", "metadata": "root.InterfaceError", "header": "['module', '___EOS___']", "index": 22 }, { "content": "class DatabaseError(Error):\n pass", "metadata": "root.DatabaseError", "header": "['module', '___EOS___']", "index": 26 }, { "content": "class DataError(DatabaseError):\n pass", "metadata": "root.DataError", "header": "['module', '___EOS___']", "index": 30 }, { "content": "class OperationalError(DatabaseError):\n pass", "metadata": "root.OperationalError", "header": "['module', '___EOS___']", "index": 34 }, { "content": "class IntegrityError(DatabaseError):\n pass", "metadata": "root.IntegrityError", "header": "['module', '___EOS___']", "index": 38 }, { "content": "class InternalError(DatabaseError):\n pass", "metadata": "root.InternalError", "header": "['module', '___EOS___']", "index": 42 }, { "content": "class ProgrammingError(DatabaseError):\n pass", "metadata": "root.ProgrammingError", "header": "['module', '___EOS___']", "index": 46 }, { "content": "class NotSupportedError(DatabaseError):\n pass", "metadata": "root.NotSupportedError", "header": "['module', '___EOS___']", "index": 50 }, { "content": "class DatabaseErrorWrapper(object):\n \"\"\"\n Context manager and decorator that re-throws backend-specific database\n exceptions using Django's common wrappers.\n \"\"\"\n\n\n\n", "metadata": "root.DatabaseErrorWrapper", "header": "['module', '___EOS___']", "index": 54 }, { "content": " def __init__(self, wrapper):\n \"\"\"\n wrapper is a database wrapper.\n\n It must have a Database attribute defining PEP-249 exceptions.\n \"\"\"\n self.wrapper = wrapper", "metadata": "root.DatabaseErrorWrapper.__init__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 60 }, { "content": " def __enter__(self):\n pass", "metadata": "root.DatabaseErrorWrapper.__enter__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 68 }, { "content": " def __exit__(self, exc_type, exc_value, traceback):\n if exc_type is None:\n return\n for dj_exc_type in (\n DataError,\n OperationalError,\n IntegrityError,\n InternalError,\n ProgrammingError,\n NotSupportedError,\n DatabaseError,\n InterfaceError,\n Error,\n ):\n db_exc_type = getattr(self.wrapper.Database, dj_exc_type.__name__)\n if issubclass(exc_type, db_exc_type):\n # Under Python 2.6, exc_value can still be a string.\n try:\n args = tuple(exc_value.args)\n except AttributeError:\n args = (exc_value,)\n dj_exc_value = dj_exc_type(*args)\n dj_exc_value.__cause__ = exc_value\n # Only set the 'errors_occurred' flag for errors that may make\n # the connection unusable.\n if dj_exc_type not in (DataError, IntegrityError):\n self.wrapper.errors_occurred = True\n six.reraise(dj_exc_type, dj_exc_value, traceback)", "metadata": "root.DatabaseErrorWrapper.__exit__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 71 }, { "content": " def __call__(self, func):\n # Note that we are intentionally not using @wraps here for performance\n # reasons. Refs #21109.\n def inner(*args, **kwargs):\n with self:\n return func(*args, **kwargs)\n return inner", "metadata": "root.DatabaseErrorWrapper.__call__", "header": "['class', 'DatabaseErrorWrapper', '(', 'object', ')', ':', '___EOS___']", "index": 100 }, { "content": "def load_backend(backend_name):\n # Look for a fully qualified database backend name\n try:\n return import_module('%s.base' % backend_name)\n except ImportError as e_user:\n # The database backend wasn't found. Display a helpful error message\n # listing all possible (built-in) database backends.\n backend_dir = os.path.join(os.path.dirname(upath(__file__)), 'backends')\n try:\n builtin_backends = [\n name for _, name, ispkg in pkgutil.iter_modules([backend_dir])\n if ispkg and name != 'dummy']\n except EnvironmentError:\n builtin_backends = []\n if backend_name not in ['django.db.backends.%s' % b for b in\n builtin_backends]:\n backend_reprs = map(repr, sorted(builtin_backends))\n error_msg = (\"%r isn't an available database backend.\\n\"\n \"Try using 'django.db.backends.XXX', where XXX \"\n \"is one of:\\n %s\\nError was: %s\" %\n (backend_name, \", \".join(backend_reprs), e_user))\n raise ImproperlyConfigured(error_msg)\n else:\n # If there's some other error, this must be an error in Django\n raise", "metadata": "root.load_backend", "header": "['module', '___EOS___']", "index": 109 }, { "content": "class ConnectionDoesNotExist(Exception):\n pass", "metadata": "root.ConnectionDoesNotExist", "header": "['module', '___EOS___']", "index": 136 }, { "content": "class ConnectionHandler(object):\n\n\n\n\n\n\n", "metadata": "root.ConnectionHandler", "header": "['module', '___EOS___']", "index": 140 }, { "content": " def __init__(self, databases=None):\n \"\"\"\n databases is an optional dictionary of database definitions (structured\n like settings.DATABASES).\n \"\"\"\n self._databases = databases\n self._connections = local()", "metadata": "root.ConnectionHandler.__init__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 141 }, { "content": " @cached_property\n def databases(self):\n if self._databases is None:\n self._databases = settings.DATABASES\n if self._databases == {}:\n self._databases = {\n DEFAULT_DB_ALIAS: {\n 'ENGINE': 'django.db.backends.dummy',\n },\n }\n if DEFAULT_DB_ALIAS not in self._databases:\n raise ImproperlyConfigured(\"You must define a '%s' database\" % DEFAULT_DB_ALIAS)\n return self._databases", "metadata": "root.ConnectionHandler.databases", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 149 }, { "content": " def ensure_defaults(self, alias):\n \"\"\"\n Puts the defaults into the settings dictionary for a given connection\n where no settings is provided.\n \"\"\"\n try:\n conn = self.databases[alias]\n except KeyError:\n raise ConnectionDoesNotExist(\"The connection %s doesn't exist\" % alias)\n\n conn.setdefault('ATOMIC_REQUESTS', False)\n if settings.TRANSACTIONS_MANAGED:\n warnings.warn(\n \"TRANSACTIONS_MANAGED is deprecated. Use AUTOCOMMIT instead.\",\n PendingDeprecationWarning, stacklevel=2)\n conn.setdefault('AUTOCOMMIT', False)\n conn.setdefault('AUTOCOMMIT', True)\n conn.setdefault('ENGINE', 'django.db.backends.dummy')\n if conn['ENGINE'] == 'django.db.backends.' or not conn['ENGINE']:\n conn['ENGINE'] = 'django.db.backends.dummy'\n conn.setdefault('CONN_MAX_AGE', 0)\n conn.setdefault('OPTIONS', {})\n conn.setdefault('TIME_ZONE', 'UTC' if settings.USE_TZ else settings.TIME_ZONE)\n for setting in ['NAME', 'USER', 'PASSWORD', 'HOST', 'PORT']:\n conn.setdefault(setting, '')\n for setting in ['TEST_CHARSET', 'TEST_COLLATION', 'TEST_NAME', 'TEST_MIRROR']:\n conn.setdefault(setting, None)", "metadata": "root.ConnectionHandler.ensure_defaults", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 163 }, { "content": " def __getitem__(self, alias):\n if hasattr(self._connections, alias):\n return getattr(self._connections, alias)\n\n self.ensure_defaults(alias)\n db = self.databases[alias]\n backend = load_backend(db['ENGINE'])\n conn = backend.DatabaseWrapper(db, alias)\n setattr(self._connections, alias, conn)\n return conn", "metadata": "root.ConnectionHandler.__getitem__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 191 }, { "content": " def __setitem__(self, key, value):\n setattr(self._connections, key, value)", "metadata": "root.ConnectionHandler.__setitem__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 202 }, { "content": " def __delitem__(self, key):\n delattr(self._connections, key)", "metadata": "root.ConnectionHandler.__delitem__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 205 }, { "content": " def __iter__(self):\n return iter(self.databases)", "metadata": "root.ConnectionHandler.__iter__", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 208 }, { "content": " def all(self):\n return [self[alias] for alias in self]", "metadata": "root.ConnectionHandler.all", "header": "['class', 'ConnectionHandler', '(', 'object', ')', ':', '___EOS___']", "index": 211 }, { "content": "class ConnectionRouter(object):\n\n\n\n db_for_read = _router_func('db_for_read')\n db_for_write = _router_func('db_for_write')\n\n", "metadata": "root.ConnectionRouter", "header": "['module', '___EOS___']", "index": 215 }, { "content": " def __init__(self, routers=None):\n \"\"\"\n If routers is not specified, will default to settings.DATABASE_ROUTERS.\n \"\"\"\n self._routers = routers", "metadata": "root.ConnectionRouter.__init__", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 216 }, { "content": " @cached_property\n def routers(self):\n if self._routers is None:\n self._routers = settings.DATABASE_ROUTERS\n routers = []\n for r in self._routers:\n if isinstance(r, six.string_types):\n router = import_by_path(r)()\n else:\n router = r\n routers.append(router)\n return routers", "metadata": "root.ConnectionRouter.routers", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 222 }, { "content": " def _router_func(action):\n def _route_db(self, model, **hints):\n chosen_db = None\n for router in self.routers:\n try:\n method = getattr(router, action)\n except AttributeError:\n # If the router doesn't have a method, skip to the next one.\n pass\n else:\n chosen_db = method(model, **hints)\n if chosen_db:\n return chosen_db\n try:\n return hints['instance']._state.db or DEFAULT_DB_ALIAS\n except KeyError:\n return DEFAULT_DB_ALIAS\n return _route_db", "metadata": "root.ConnectionRouter._router_func", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 235 }, { "content": " def allow_relation(self, obj1, obj2, **hints):\n for router in self.routers:\n try:\n method = router.allow_relation\n except AttributeError:\n # If the router doesn't have a method, skip to the next one.\n pass\n else:\n allow = method(obj1, obj2, **hints)\n if allow is not None:\n return allow\n return obj1._state.db == obj2._state.db", "metadata": "root.ConnectionRouter.allow_relation", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 257 }, { "content": " def allow_syncdb(self, db, model):\n for router in self.routers:\n try:\n method = router.allow_syncdb\n except AttributeError:\n # If the router doesn't have a method, skip to the next one.\n pass\n else:\n allow = method(db, model)\n if allow is not None:\n return allow\n return True", "metadata": "root.ConnectionRouter.allow_syncdb", "header": "['class', 'ConnectionRouter', '(', 'object', ')', ':', '___EOS___']", "index": 270 } ]

[ { "span": "from functools import wraps", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 27 } ]

[]

1

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Unused import

enthought/mayavi/mayavi/mlab.py

[ { "content": "\"\"\"\nmlab: a simple scripting interface to Mayavi2 for 3D plotting.\n\nCan be used inside Mayavi2 itself, in \"ipython --gui=qt\", or in any\napplication with a compatible UI (Qt or wxPython).\n\"\"\"\n\n# Author: Prabhu Ramachandran <[email protected]>\n# Gael Varoquaux <gael dot varoquaux at normalesup dot org>\n# Copyright (c) 2007-2016, Enthought, Inc.\n# License: BSD Style.\n\n\n# Try forcing the use of wx 2.8 before any other import.\nimport sys\nif not 'wx' in sys.modules:\n try:\n from traits.etsconfig.api import ETSConfig\n if ETSConfig.toolkit in ('wx', ''):\n import wxversion\n wxversion.ensureMinimal('2.8')\n except ImportError:\n \"\"\" wxversion not installed \"\"\"\n\n\n# Mayavi imports\nfrom mayavi.tools.camera import view, roll, yaw, pitch, move\nfrom mayavi.tools.figure import figure, clf, gcf, savefig, \\\n draw, sync_camera, close, screenshot\nfrom mayavi.tools.engine_manager import get_engine, show_pipeline, \\\n options, set_engine\nfrom mayavi.tools.show import show\nfrom mayavi.tools.animator import animate\n\n\nfrom .tools.helper_functions import contour3d, test_contour3d, \\\n quiver3d, test_quiver3d, test_quiver3d_2d_data, \\\n points3d, test_points3d, test_molecule, \\\n flow, test_flow, \\\n imshow, test_imshow, \\\n surf, test_surf, mesh, test_mesh, test_simple_surf, \\\n test_mesh_sphere, test_fancy_mesh,\\\n contour_surf, test_contour_surf, \\\n plot3d, test_plot3d, \\\n test_plot3d_anim, test_points3d_anim, test_contour3d_anim,\\\n test_simple_surf_anim, test_flow_anim, test_mesh_sphere_anim, \\\n triangular_mesh, test_triangular_mesh, barchart, \\\n test_barchart, test_mesh_mask_custom_colors\n\n\nfrom .tools.decorations import colorbar, scalarbar, vectorbar, \\\n outline, axes, xlabel, ylabel, zlabel, text, title, \\\n orientation_axes, text3d\n\nfrom .tools import pipeline\n\nfrom .tools.tools import start_recording, stop_recording\n\nif __name__ == \"__main__\":\n import numpy\n\n n_mer, n_long = 6, 11\n pi = numpy.pi\n dphi = pi/1000.0\n phi = numpy.arange(0.0, 2*pi + 0.5*dphi, dphi, 'd')\n mu = phi*n_mer\n x = numpy.cos(mu)*(1+numpy.cos(n_long*mu/n_mer)*0.5)\n y = numpy.sin(mu)*(1+numpy.cos(n_long*mu/n_mer)*0.5)\n z = numpy.sin(n_long*mu/n_mer)*0.5\n\n pl = plot3d(x, y, z, numpy.sin(mu), tube_radius=0.05, colormap='Spectral')\n\n colorbar(orientation='vertical')\n\n t = numpy.linspace(0, 4*numpy.pi, 100)\n cos = numpy.cos\n sin = numpy.sin\n\n x = sin(2*t)\n y = cos(t)\n z = sin(2*t)\n s = sin(t)\n\n pts = points3d(x, y, z, s, colormap=\"YlGnBu\", scale_factor=0.1,\n extent=(-0.3,0.3, -0.3, 0.3, -0.2,0.2))\n\n axes(xlabel='X', ylabel='Y', zlabel='Z')\n outline(pl)\n\n title('Mayavi rocks', height=0.85)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def show_engine():\n \"\"\" This function is deprecated, please use show_pipeline.\n \"\"\"\n import warnings\n warnings.warn('The show_engine function is deprecated, please use'\n 'show_pipeline', stacklevel=2)\n return show_pipeline()", "metadata": "root.show_engine", "header": "['module', '___EOS___']", "index": 34 } ]

[ { "span": "from mayavi.tools.camera import view, roll, yaw, pitch, move", "start_line": 26, "start_column": 0, "end_line": 26, "end_column": 60 }, { "span": "from mayavi.tools.figure import figure, clf, gcf, savefig, \\\n draw, sync_camera, close, screenshot", "start_line": 27, "start_column": 0, "end_line": 28, "end_column": 40 }, { "span": "from mayavi.tools.engine_manager import get_engine, show_pipeline, \\\n options, set_engine", "start_line": 29, "start_column": 0, "end_line": 30, "end_column": 27 }, { "span": "from mayavi.tools.show import show", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 34 }, { "span": "from mayavi.tools.animator import animate", "start_line": 32, "start_column": 0, "end_line": 32, "end_column": 41 } ]

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Module is imported with 'import' and 'import from'

lorien/grab/grab/spider/base.py

[ { "content": "from __future__ import absolute_import\nimport types\nimport logging\nimport time\ntry:\n from urlparse import urljoin\nexcept ImportError:\n from urllib.parse import urljoin\nfrom random import randint\nfrom six.moves import queue\nfrom copy import deepcopy\nimport six\nimport os\nfrom weblib import metric\nfrom contextlib import contextmanager\nfrom traceback import format_exc\nimport multiprocessing\nimport threading\nfrom datetime import datetime\nimport threading\nfrom threading import Thread\nfrom collections import deque\n\nfrom grab.base import Grab\nfrom grab.error import GrabInvalidUrl\nfrom grab.spider.error import (SpiderError, SpiderMisuseError, FatalError,\n NoTaskHandler, NoDataHandler,\n SpiderConfigurationError)\nfrom grab.spider.task import Task\nfrom grab.spider.data import Data\nfrom grab.spider.transport.multicurl import MulticurlTransport\nfrom grab.proxylist import ProxyList, BaseProxySource\nfrom grab.util.misc import camel_case_to_underscore\nfrom weblib.encoding import make_str, make_unicode\nfrom grab.base import GLOBAL_STATE\nfrom grab.stat import Stat, Timer\nfrom grab.spider.parser_pipeline import ParserPipeline\nfrom grab.spider.cache_pipeline import CachePipeline\nfrom grab.spider.deprecated import DeprecatedThingsSpiderMixin\nfrom grab.util.warning import warn\n\nDEFAULT_TASK_PRIORITY = 100\nDEFAULT_NETWORK_STREAM_NUMBER = 3\nDEFAULT_TASK_TRY_LIMIT = 5\nDEFAULT_NETWORK_TRY_LIMIT = 5\nRANDOM_TASK_PRIORITY_RANGE = (50, 100)\nNULL = object()\n\nlogger = logging.getLogger('grab.spider.base')\nlogger_verbose = logging.getLogger('grab.spider.base.verbose')\n# If you need verbose logging just\n# change logging level of that logger\nlogger_verbose.setLevel(logging.FATAL)\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import multiprocessing", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 22 }, { "span": "import threading", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 16 }, { "span": "import threading", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 16 } ]

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Non-standard exception raised in special method

scikit-learn/scikit-learn/sklearn/externals/funcsigs.py

[ { "content": " def __hash__(self):\n msg = \"unhashable type: '{0}'\".format(self.__class__.__name__)\n raise TypeError(msg)", "metadata": "root.Parameter.__hash__", "header": "['class', 'Parameter', '(', 'object', ')', ':', '___EOS___']", "index": 331 }, { "content": " def __hash__(self):\n msg = \"unhashable type: '{0}'\".format(self.__class__.__name__)\n raise TypeError(msg)", "metadata": "root.BoundArguments.__hash__", "header": "['class', 'BoundArguments', '(', 'object', ')', ':', '___EOS___']", "index": 430 }, { "content": " def __hash__(self):\n msg = \"unhashable type: '{0}'\".format(self.__class__.__name__)\n raise TypeError(msg)", "metadata": "root.Signature.__hash__", "header": "['class', 'Signature', '(', 'object', ')', ':', '___EOS___']", "index": 610 } ]

[ { "span": "def __hash__(self):", "start_line": 331, "start_column": 4, "end_line": 331, "end_column": 23 }, { "span": "def __hash__(self):", "start_line": 430, "start_column": 4, "end_line": 430, "end_column": 23 }, { "span": "def __hash__(self):", "start_line": 610, "start_column": 4, "end_line": 610, "end_column": 23 } ]

[]

1

true

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Unused import

uwdata/termite-data-server/web2py/gluon/tests/test_languages.py

[ { "content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\n\n\"\"\"\n Unit tests for gluon.languages\n\"\"\"\n\nimport sys\nimport os\nimport unittest\nimport tempfile\nimport threading\nimport logging\n\n\nfix_sys_path()\n\n\nimport languages\nfrom storage import Storage\n\ntry:\n import multiprocessing\n\n\n\n\nexcept ImportError:\n logging.warning(\"Skipped test case, no multiprocessing module.\")\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def fix_sys_path():\n \"\"\"\n logic to have always the correct sys.path\n '', web2py/gluon, web2py/site-packages, web2py/ ...\n \"\"\"\n\n def add_path_first(path):\n sys.path = [path] + [p for p in sys.path if (\n not p == path and not p == (path + '/'))]\n\n path = os.path.dirname(os.path.abspath(__file__))\n\n if not os.path.isfile(os.path.join(path,'web2py.py')):\n i = 0\n while i<10:\n i += 1\n if os.path.exists(os.path.join(path,'web2py.py')):\n break\n path = os.path.abspath(os.path.join(path, '..'))\n\n paths = [path,\n os.path.abspath(os.path.join(path, 'site-packages')),\n os.path.abspath(os.path.join(path, 'gluon')),\n '']\n [add_path_first(path) for path in paths]", "metadata": "root.fix_sys_path", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def read_write(args):\n (filename, iterations) = args\n for i in range(0, iterations):\n content = languages.read_dict(filename)\n if not len(content):\n return False\n languages.write_dict(filename, content)\n return True", "metadata": "root.read_write", "header": "['module', '___EOS___']", "index": 49 }, { "content": " class TestLanguagesParallel(unittest.TestCase):\n\n\n", "metadata": "root.TestLanguagesParallel", "header": "['module', '___EOS___']", "index": 58 }, { "content": " def setUp(self):\n self.filename = tempfile.mktemp()\n contents = dict()\n for i in range(1000):\n contents[\"key%d\" % i] = \"value%d\" % i\n languages.write_dict(self.filename, contents)\n languages.read_dict(self.filename)", "metadata": "root.TestLanguagesParallel.setUp", "header": "['class', 'TestLanguagesParallel', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 60 }, { "content": " def tearDown(self):\n try:\n os.remove(self.filename)\n except:\n pass", "metadata": "root.TestLanguagesParallel.tearDown", "header": "['class', 'TestLanguagesParallel', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 68 }, { "content": " def test_reads_and_writes(self):\n readwriters = 10\n pool = multiprocessing.Pool(processes=readwriters)\n results = pool.map(read_write, [[self.filename, 10]] * readwriters)\n for result in results:\n self.assertTrue(result)", "metadata": "root.TestLanguagesParallel.test_reads_and_writes", "header": "['class', 'TestLanguagesParallel', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 74 }, { "content": " class TestTranslations(unittest.TestCase):\n\n\n", "metadata": "root.TestTranslations", "header": "['module', '___EOS___']", "index": 81 }, { "content": " def setUp(self):\n if os.path.isdir('gluon'):\n self.langpath = 'applications/welcome/languages'\n else:\n self.langpath = os.path.realpath(\n '../../applications/welcome/languages')\n self.http_accept_language = 'en'", "metadata": "root.TestTranslations.setUp", "header": "['class', 'TestTranslations', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 83 }, { "content": " def tearDown(self):\n pass", "metadata": "root.TestTranslations.tearDown", "header": "['class', 'TestTranslations', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 91 }, { "content": " def test_plain(self):\n T = languages.translator(self.langpath, self.http_accept_language)\n self.assertEqual(str(T('Hello World')),\n 'Hello World')\n self.assertEqual(str(T('Hello World## comment')),\n 'Hello World')\n self.assertEqual(str(T('%s %%{shop}', 1)),\n '1 shop')\n self.assertEqual(str(T('%s %%{shop}', 2)),\n '2 shops')\n self.assertEqual(str(T('%s %%{shop[0]}', 1)),\n '1 shop')\n self.assertEqual(str(T('%s %%{shop[0]}', 2)),\n '2 shops')\n self.assertEqual(str(T('%s %%{quark[0]}', 1)),\n '1 quark')\n self.assertEqual(str(T('%s %%{quark[0]}', 2)),\n '2 quarks')\n self.assertEqual(str(T.M('**Hello World**')),\n '<strong>Hello World</strong>')\n T.force('it')\n self.assertEqual(str(T('Hello World')),\n 'Salve Mondo')", "metadata": "root.TestTranslations.test_plain", "header": "['class', 'TestTranslations', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 94 } ]

[ { "span": "import threading", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 16 }, { "span": "from storage import Storage", "start_line": 44, "start_column": 0, "end_line": 44, "end_column": 27 } ]

[]

1

false

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"==_", "'\\u", "\\u", "main", "\\u\\u'_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "unittest_", "._", "main_", "(_", ")_", "\\u\\u\\uDEDENT\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "fix", "\\u", "sys", "\\u", "path_", "(_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "\\", "10", ";", " ", " ", " ", " ", "logic", " ", "to", " ", "have", " ", "alw", "ay", "s", " ", "the", " ", "correct", " ", "sys", ".", "path", "\\", "10", ";", " ", "''", ",", " ", "web", "2py", "/", "glu", "on", ",", " ", "web", "2py", "/", "site", "-", "package", "s", ",", " ", "web", "2py", "/", " ", "...", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "def_", "add", "\\u", "path", "\\u", "first_", "(_", "path_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "sys_", "._", "path_", "=_", "[_", "path_", "]_", 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Unused import

Microsoft/ivy/src/ivy/ivy_transrel.py

[ { "content": "#\n# Copyright (c) Microsoft Corporation. All Rights Reserved.\n#\n\"\"\" Functions for manipluating transition relations as two-vocabulary formulas\n\nUpdates represent the semantics of actions and states. Both kinds of\nupdates have a set of modified symbols. The difference is that action\nstyle uses \"new\" versions of the symbols to represent the post-state,\nwhile state style uses \"old\" version to represent the pre-state. In a\n\"pure\" state, the modifies set is \"all\" and the \"old\" symbols are not\nreferred to. That is, a pure state says nothing about the initial\ncondition. On the other hand, the state of a procedure is\n\"impure\". The initial state of a procedure has an empty modifies set,\nmeaning mean the current values are all equal to the initial values.\n\nAn update is represented as a triple (mod,tr,pre) where mod is a list\nof modified symbols (or \"all\") and tr is a two-vocabulary transition\nrelation, and pre is a one-vocabulary precondition. The precondition\nis stated in the negative, so that an action *fails* in a state s if\nst /\\ axioms /\\ pre is satisfiable. The tr and pre are both implicitly\nexistentially quantified over the skolem symbols.\n\nBecause pre is negative, we say that an action a = (mod_a,tr_a,pre_a)\n*refines* (is a safe replacement for) an action b = (mod_b,tr_b,pre_b)\nwhen pre_a => pre_b and frame(mod_a) /\\ tr_a => frame(mod_b) /\\\ntr_b. Here, frame(S), where S is a set of symbols, is the condition\nthat all symbols *not* in S are preserved.\n\n\"\"\"\n\nfrom ivy_utils import UniqueRenamer, union_to_list, list_union, list_diff, IvyError, inverse_map, compose_maps, pretty\nfrom ivy_logic import Variable, Constant, Literal, Atom, Not, And, Or,App, RelationSort, Definition, is_prenex_universal\nfrom ivy_logic_utils import used_symbols_clauses, rename_clauses, clauses_using_symbols, simplify_clauses,\\\n used_variables_clauses, used_constants_clauses, substitute_constants_clause, substitute_constants_clauses, constants_clauses,\\\n relations_clauses, eq_lit, condition_clauses, or_clauses, and_clauses, false_clauses, true_clauses,\\\n formula_to_clauses, clauses_to_formula, formula_to_clauses_tseitin, is_ground_clause, \\\n relations_clause, Clauses, sym_inst, negate_clauses, negate\nfrom ivy_solver import unsat_core, clauses_imply, clauses_imply_formula, clauses_sat, clauses_case, get_model_clauses, clauses_model_to_clauses, get_small_model\nimport ivy_logic\nimport ivy_logic_utils as lu\nimport ivy_utils as iu\nfrom logic_util import is_tautology_equality\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# TODO: this will be quadratic for chains of updates\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def new(sym):\n \"\"\" Return the \"new\" version of symbol \"sym\", that is, the one\n representing \"sym\" in the post_state.\n \"\"\"\n return sym.prefix('new_')", "metadata": "root.new", "header": "['module', '___EOS___']", "index": 44 }, { "content": "def is_new(sym):\n return sym.startswith('new_')", "metadata": "root.is_new", "header": "['module', '___EOS___']", "index": 50 }, { "content": "def new_of(sym):\n return sym.drop_prefix('new_')", "metadata": "root.new_of", "header": "['module', '___EOS___']", "index": 53 }, { "content": "def old(sym):\n \"\"\" Return the \"old\" version of symbol \"sym\", that is, the one\n representing \"sym\" in the pre_state.\n \"\"\"\n return sym.prefix('old_')", "metadata": "root.old", "header": "['module', '___EOS___']", "index": 56 }, { "content": "def is_old(sym):\n return sym.startswith('old_')", "metadata": "root.is_old", "header": "['module', '___EOS___']", "index": 62 }, { "content": "def old_of(sym):\n return sym.drop_prefix('old_')", "metadata": "root.old_of", "header": "['module', '___EOS___']", "index": 65 }, { "content": "def rename(sym,rn):\n return sym.rename(rn)", "metadata": "root.rename", "header": "['module', '___EOS___']", "index": 68 }, { "content": "def is_skolem(sym):\n \"\"\"\n Symbols with __ in them in the TR are considerd to be implicitly existentially quantified.\n \"\"\"\n return sym.contains('__')", "metadata": "root.is_skolem", "header": "['module', '___EOS___']", "index": 71 }, { "content": "def null_update():\n return ([],true_clauses(),false_clauses())", "metadata": "root.null_update", "header": "['module', '___EOS___']", "index": 77 }, { "content": "def pure_state(clauses):\n return (None,clauses,false_clauses())", "metadata": "root.pure_state", "header": "['module', '___EOS___']", "index": 80 }, { "content": "def is_pure_state(state):\n return state[0] == None", "metadata": "root.is_pure_state", "header": "['module', '___EOS___']", "index": 83 }, { "content": "def top_state():\n return pure_state(true_clauses())", "metadata": "root.top_state", "header": "['module', '___EOS___']", "index": 86 }, { "content": "def bottom_state():\n return pure_state(false_clauses())", "metadata": "root.bottom_state", "header": "['module', '___EOS___']", "index": 89 }, { "content": "def state_postcond(state):\n return state[1]", "metadata": "root.state_postcond", "header": "['module', '___EOS___']", "index": 92 }, { "content": "def state_precond(state):\n return state[2]", "metadata": "root.state_precond", "header": "['module', '___EOS___']", "index": 95 }, { "content": "def state_to_action(update):\n \"\"\" convert from the \"state\" style to the \"action\" style \"\"\"\n updated,postcond,pre = update\n postcond,pre = clausify(postcond), clausify(pre)\n renaming = dict()\n for s in updated:\n renaming[s] = new(s)\n for s in used_symbols_clauses(postcond):\n if is_old(s):\n renaming[s] = old_of(s)\n return (updated,rename_clauses(postcond,renaming),pre)", "metadata": "root.state_to_action", "header": "['module', '___EOS___']", "index": 98 }, { "content": "def action_to_state(update):\n \"\"\" convert from the \"action\" style to the \"state\" style \"\"\"\n updated,tr,pre = update\n renaming = dict()\n for s in updated:\n renaming[s] = old(s)\n for s in used_symbols_clauses(tr):\n if is_new(s):\n renaming[s] = new_of(s)\n return (updated,rename_clauses(tr,renaming),pre)", "metadata": "root.action_to_state", "header": "['module', '___EOS___']", "index": 110 }, { "content": "def update_frame_constraint(update,relations):\n \"\"\" Return a clause list constraining all updated symbols\n to keep their previous values \"\"\"\n clauses = []\n for sym in update[0]:\n if sym in relations:\n arity = relations[sym]\n vs = [Variable(\"V{}\".format(i)) for i in range(0,arity)]\n lit1 = Literal(1,Atom(sym,vs))\n lit2 = Literal(1,Atom(new(sym),vs))\n clauses += [[~lit1,lit2],[lit1,~lit2]]\n else:\n clauses.append([eq_lit(Constant(sym),Constant(new(sym)))])\n return Clauses(clauses)", "metadata": "root.update_frame_constraint", "header": "['module', '___EOS___']", "index": 121 }, { "content": "def frame_def(sym,op):\n \"\"\" Add the condition that sym remains unchanged to a\n transition relation (using op = {new,old})\"\"\"\n lhs = sym_inst(op(sym) if op is new else sym)\n rhs = sym_inst(sym if op is new else op(sym))\n dfn = Definition(lhs,rhs)\n return dfn", "metadata": "root.frame_def", "header": "['module', '___EOS___']", "index": 137 }, { "content": "def frame(updated,relations,op):\n \"\"\" Return a clause list constraining all updated symbols\n to keep their op values, for op = new,old \"\"\"\n return Clauses([],[frame_def(sym,op) for sym in updated])", "metadata": "root.frame", "header": "['module', '___EOS___']", "index": 145 }, { "content": "def symbol_frame_cond(sym,sig):\n \"\"\" Return transition relation implying that sym remains unchanged \"\"\"\n return Clauses([],[frame_def(sym,new)])", "metadata": "root.symbol_frame_cond", "header": "['module', '___EOS___']", "index": 150 }, { "content": "def frame_update(update,in_scope,sig):\n \"\"\" Modify an update so all symbols in \"in_scope\" are on the\n update list, preserving semantics.\n \"\"\"\n updated,clauses,pre = update\n moded = set(updated)\n dfns = []\n for sym in in_scope:\n if sym not in moded:\n updated.append(sym)\n dfns.append(frame_def(sym,new))\n return (updated,and_clauses(clauses,Clauses([],dfns)),pre)", "metadata": "root.frame_update", "header": "['module', '___EOS___']", "index": 154 }, { "content": "def diff_frame(updated1,updated2,relations,op):\n if updated1 == None or updated2 == None: return Clauses([])\n updated = list_diff(updated2,updated1)\n return frame(updated,relations,op)", "metadata": "root.diff_frame", "header": "['module', '___EOS___']", "index": 167 }, { "content": "def updated_join(updated1,updated2):\n if updated1 == None or updated1 == None: return None\n return list_union(updated1,updated2)", "metadata": "root.updated_join", "header": "['module', '___EOS___']", "index": 172 }, { "content": "def join(s1,s2,relations,op):\n u1,c1,p1 = s1\n u2,c2,p2 = s2\n df12 = diff_frame(u1,u2,relations,op)\n df21 = diff_frame(u2,u1,relations,op)\n c1 = and_clauses(c1,df12)\n c2 = and_clauses(c2,df21)\n p1 = and_clauses(p1,df12)\n p2 = and_clauses(p2,df21)\n u = updated_join(u1,u2)\n c = or_clauses(c1,c2)\n p = or_clauses(p1,p2)\n return (u,c,p)", "metadata": "root.join", "header": "['module', '___EOS___']", "index": 176 }, { "content": "class CounterExample(object):", "metadata": "root.CounterExample", "header": "['module', '___EOS___']", "index": 190 }, { "content": " def __init__(self,clauses):\n self.clauses = clauses", "metadata": "root.CounterExample.__init__", "header": "['class', 'CounterExample', '(', 'object', ')', ':', '___EOS___']", "index": 191 }, { "content": " def __nonzero__(self):\n return False", "metadata": "root.CounterExample.__nonzero__", "header": "['class', 'CounterExample', '(', 'object', ')', ':', '___EOS___']", "index": 193 }, { "content": "def clauses_imply_formula_cex(clauses,fmla):\n if clauses_imply_formula(clauses,fmla):\n return True\n return CounterExample(conjoin(clauses,negate_clauses(formula_to_clauses(fmla))))", "metadata": "root.clauses_imply_formula_cex", "header": "['module', '___EOS___']", "index": 196 }, { "content": "def implies(s1,s2,axioms,relations,op):\n u1,c1,p1 = s1\n u2,c2,p2 = s2\n if u1 == None and u2 != None:\n return False\n# print \"c1: {}\".format(c1)\n# print \"axioms: {}\".format(axioms)\n# print \"df: {}\".format(diff_frame(u1,u2,relations,op))\n c1 = and_clauses(c1,axioms,diff_frame(u1,u2,relations,op))\n if isinstance(c2,Clauses):\n if not c2.is_universal_first_order() or not p2.is_universal_first_order():\n return False\n c2 = and_clauses(c2,diff_frame(u2,u1,relations,op))\n return clauses_imply(p1,p2) and clauses_imply(c1,c2)\n else:\n if not is_prenex_universal(c2) or not is_prenex_universal(p2):\n return False\n c2 = And(c2,clauses_to_formula(diff_frame(u2,u1,relations,op)))\n return clauses_imply_formula_cex(p1,p2) and clauses_imply_formula_cex(c1,c2)", "metadata": "root.implies", "header": "['module', '___EOS___']", "index": 201 }, { "content": "def implies_state(s1,s2,axioms,relations):\n return implies(s1,s2,axioms,relations,old)", "metadata": "root.implies_state", "header": "['module', '___EOS___']", "index": 221 }, { "content": "def implies_action(s1,s2,axioms,relations):\n return implies(s1,s2,axioms,relations,new)", "metadata": "root.implies_action", "header": "['module', '___EOS___']", "index": 224 }, { "content": "def join_state(s1,s2,relations):\n return join(clausify_state(s1),clausify_state(s2),relations,old)", "metadata": "root.join_state", "header": "['module', '___EOS___']", "index": 227 }, { "content": "def join_action(s1,s2,relations):\n return join(s1,s2,relations,new)", "metadata": "root.join_action", "header": "['module', '___EOS___']", "index": 230 }, { "content": "def condition_update_on_fmla(update,fmla,relations):\n \"\"\"Given an update, return an update conditioned on fmla. Maybe an \"else\" would\n be useful too :-).\n \"\"\"\n updated,if_clauses,if_pre = update\n else_clauses = update_frame_constraint(update,relations)\n if_clauses = condition_clauses(if_clauses,fmla)\n else_clauses = condition_clauses(else_clauses,Not(fmla))\n## print \"if_clauses: %s\" % if_clauses\n## print \"else_clauses: %s\" % else_clauses\n return updated,(and_clauses(if_clauses,else_clauses)),if_pre", "metadata": "root.condition_update_on_fmla", "header": "['module', '___EOS___']", "index": 233 }, { "content": "def rename_distinct(clauses1,clauses2):\n \"\"\" rename skolems in clauses1 so they don't occur in clauses2.\n \"\"\"\n# print \"rename_distinct clauses1 = {}\".format(clauses1)\n# print \"rename_distinct clauses2 = {!r}\".format(clauses2)\n used1 = used_symbols_clauses(clauses1)\n used2 = used_symbols_clauses(clauses2)\n rn = UniqueRenamer('',used2)\n map1 = dict()\n for s in used1:\n if is_skolem(s):\n map1[s] = rename(s,rn)\n return rename_clauses(clauses1,map1)", "metadata": "root.rename_distinct", "header": "['module', '___EOS___']", "index": 245 }, { "content": "def compose_updates(update1,axioms,update2):\n updated1, clauses1, pre1 = update1\n updated2, clauses2, pre2 = update2\n clauses2 = rename_distinct(clauses2,clauses1)\n pre2 = rename_distinct(pre2,clauses1)\n# print \"clauses2 = {}\".format(clauses2)\n us1 = set(updated1)\n us2 = set(updated2)\n mid = us1.intersection(us2)\n mid_ax = clauses_using_symbols(mid,axioms)\n used = used_symbols_clauses(and_clauses(clauses1,clauses2))\n rn = UniqueRenamer('__m_',used)\n map1 = dict()\n map2 = dict()\n for v in updated1:\n map2[v] = new(v)\n for mv in mid:\n mvf = rename(mv,rn)\n map1[new(mv)] = mvf\n map2[mv] = mvf\n clauses1 = rename_clauses(clauses1,map1)\n new_clauses = and_clauses(clauses1, rename_clauses(and_clauses(clauses2,mid_ax),map2))\n new_updated = list(us1.union(us2))\n# print \"pre1 before = {}\".format(pre1)\n pre1 = and_clauses(pre1,diff_frame(updated1,updated2,None,new)) # keep track of post-state of assertion failure\n# print \"pre1 = {}\".format(pre1)\n new_pre = or_clauses(pre1,and_clauses(clauses1,rename_clauses(and_clauses(pre2,mid_ax),map2)))\n# print \"new_pre = {}\".format(new_pre)\n return (new_updated,new_clauses,new_pre)", "metadata": "root.compose_updates", "header": "['module', '___EOS___']", "index": 261 }, { "content": "def exist_quant_map(syms,clauses):\n used = used_symbols_clauses(clauses)\n rn = UniqueRenamer('__',used)\n map1 = dict()\n for s in syms:\n map1[s] = rename(s,rn)\n return map1,rename_clauses(clauses,map1)", "metadata": "root.exist_quant_map", "header": "['module', '___EOS___']", "index": 291 }, { "content": "def exist_quant(syms,clauses):\n map1,res = exist_quant_map(syms,clauses)\n return res", "metadata": "root.exist_quant", "header": "['module', '___EOS___']", "index": 299 }, { "content": "def conjoin(clauses1,clauses2):\n \"\"\" Conjoin clause sets, taking into account skolems \"\"\"\n return and_clauses(clauses1,rename_distinct(clauses2,clauses1))", "metadata": "root.conjoin", "header": "['module', '___EOS___']", "index": 303 }, { "content": "def constrain_state(upd,fmla):\n return (upd[0],and_clauses(upd[1],formula_to_clauses(fmla)),upd[2])", "metadata": "root.constrain_state", "header": "['module', '___EOS___']", "index": 307 }, { "content": "def hide(syms,update):\n syms = set(syms)\n syms.update(new(s) for s in update[0] if s in syms)\n new_updated = [s for s in update[0] if s not in syms]\n new_tr = exist_quant(syms,update[1])\n new_pre = exist_quant(syms,update[2])\n return (new_updated,new_tr,new_pre)", "metadata": "root.hide", "header": "['module', '___EOS___']", "index": 310 }, { "content": "def hide_state(syms,update):\n syms = set(syms)\n if update[0] != None:\n syms.update(old(s) for s in update[0] if s in syms)\n new_updated = [s for s in update[0] if s not in syms]\n else:\n new_updated = None\n new_tr = exist_quant(syms,update[1])\n new_pre = exist_quant(syms,update[2])\n return (new_updated,new_tr,new_pre)", "metadata": "root.hide_state", "header": "['module', '___EOS___']", "index": 318 }, { "content": "def hide_state_map(syms,update):\n syms = set(syms)\n if update[0] != None:\n syms.update(old(s) for s in update[0] if s in syms)\n new_updated = [s for s in update[0] if s not in syms]\n else:\n new_updated = None\n trmap,new_tr = exist_quant_map(syms,update[1])\n new_pre = exist_quant(syms,update[2])\n return trmap, (new_updated,new_tr,new_pre)", "metadata": "root.hide_state_map", "header": "['module', '___EOS___']", "index": 329 }, { "content": "def subst_action(update,subst):\n print subst\n syms = dict(subst.iteritems())\n syms.update((new(s),new(syms[s])) for s in update[0] if s in syms)\n print syms\n new_updated = [subst.get(s,s) for s in update[0]]\n new_tr = rename_clauses(update[1],syms)\n new_pre = rename_clauses(update[2],syms)\n return (new_updated,new_tr,new_pre)", "metadata": "root.subst_action", "header": "['module', '___EOS___']", "index": 340 }, { "content": "def forward_image_map(pre_state,axioms,update):\n updated, clauses, _precond = update\n# print \"transition_relation: {}\".format(clauses)\n pre_ax = clauses_using_symbols(updated,axioms)\n pre = conjoin(pre_state,pre_ax)\n map1,res = exist_quant_map(updated,conjoin(pre,clauses))\n res = rename_clauses(res, dict((new(x),x) for x in updated))\n## print \"before simp: %s\" % res\n # res = simplify_clauses(res)\n return map1,res", "metadata": "root.forward_image_map", "header": "['module', '___EOS___']", "index": 350 }, { "content": "def forward_image(pre_state,axioms,update):\n map1,res = forward_image_map(pre_state,axioms,update)\n return res", "metadata": "root.forward_image", "header": "['module', '___EOS___']", "index": 361 }, { "content": "def action_failure(action):\n upd,tr,pre = action\n return upd,pre,true_clauses()", "metadata": "root.action_failure", "header": "['module', '___EOS___']", "index": 365 }, { "content": "class ActionFailed(Exception):", "metadata": "root.ActionFailed", "header": "['module', '___EOS___']", "index": 369 }, { "content": " def __init__(self,clauses,trans):\n self.clauses = clauses\n self.trans = trans", "metadata": "root.ActionFailed.__init__", "header": "['class', 'ActionFailed', '(', 'Exception', ')', ':', '___EOS___']", "index": 370 }, { "content": "def clausify(f):\n return f if isinstance(f,Clauses) else formula_to_clauses(f)", "metadata": "root.clausify", "header": "['module', '___EOS___']", "index": 374 }, { "content": "def clausify_state(s):\n upd,tr,pre = s\n return (upd,clausify(tr),clausify(pre))", "metadata": "root.clausify_state", "header": "['module', '___EOS___']", "index": 377 }, { "content": "def remove_taut_eqs_clauses(clauses):\n return Clauses(\n [f for f in clauses.fmlas if not is_tautology_equality(f)],\n clauses.defs\n )", "metadata": "root.remove_taut_eqs_clauses", "header": "['module', '___EOS___']", "index": 382 }, { "content": "def extract_pre_post_model(clauses,model,updated):\n renaming = dict((v,new(v)) for v in updated)\n ignore = lambda s: s.is_skolem() or is_new(s)\n pre_clauses = clauses_model_to_clauses(clauses,ignore = ignore,model = model,numerals=use_numerals())\n ignore = lambda s: s.is_skolem() or (not is_new(s) and s in renaming)\n post_clauses = clauses_model_to_clauses(clauses,ignore = ignore,model = model,numerals=use_numerals())\n post_clauses = rename_clauses(post_clauses,inverse_map(renaming))\n return map(remove_taut_eqs_clauses,(pre_clauses,post_clauses))", "metadata": "root.extract_pre_post_model", "header": "['module', '___EOS___']", "index": 388 }, { "content": "def compose_state_action(state,axioms,action, check=True):\n \"\"\" Compose a state and an action, returning a state \"\"\"\n# print \"state: {}\".format(state)\n# print \"action: {}\".format(action)\n su,sc,sp = state\n au,ac,ap = action\n sc,sp = clausify(sc),clausify(sp)\n if check:\n pre_test = and_clauses(and_clauses(sc,ap),axioms)\n model = small_model_clauses(pre_test)\n if model != None:\n trans = extract_pre_post_model(pre_test,model,au)\n post_updated = [new(s) for s in au]\n pre_test = exist_quant(post_updated,pre_test)\n raise ActionFailed(pre_test,trans)\n if su != None: # none means all moded\n ssu = set(su) # symbols already modified in state\n rn = dict((x,old(x)) for x in au if x not in ssu)\n sc = rename_clauses(sc,rn)\n ac = rename_clauses(ac,rn)\n su = list(su)\n union_to_list(su,au)\n img = forward_image(sc,axioms,action)\n## print \"compose: {}\".format((su,img,sp))\n return (su,img,sp)", "metadata": "root.compose_state_action", "header": "['module', '___EOS___']", "index": 397 }, { "content": "def reverse_image(post_state,axioms,update):\n updated, clauses, _precond = update\n post_ax = clauses_using_symbols(updated,axioms)\n post_clauses = conjoin(post_state,post_ax)\n post_clauses = rename_clauses(post_clauses, dict((x,new(x)) for x in updated))\n post_updated = [new(s) for s in updated]\n res = exist_quant(post_updated,conjoin(clauses,post_clauses))\n# res = simplify_clauses(res)\n return res", "metadata": "root.reverse_image", "header": "['module', '___EOS___']", "index": 424 }, { "content": "def interpolant(clauses1,clauses2,axioms,interpreted):\n# print \"interpolant clauses1={} clauses2={}\".format(clauses1,clauses2)\n# print \"axioms = {}\".format(axioms)\n foo = and_clauses(clauses1,axioms)\n clauses2 = simplify_clauses(clauses2)\n core = unsat_core(clauses2,foo)\n if core == None:\n return None\n# print \"core: %s\" % core\n return core, interp_from_unsat_core(clauses2,foo,core,interpreted)", "metadata": "root.interpolant", "header": "['module', '___EOS___']", "index": 434 }, { "content": "def forward_interpolant(pre_state,update,post_state,axioms,interpreted):\n return interpolant(forward_image(pre_state,axioms,update),post_state,axioms,interpreted)", "metadata": "root.forward_interpolant", "header": "['module', '___EOS___']", "index": 445 }, { "content": "def reverse_interpolant_case(post_state,update,pre_state,axioms,interpreted):\n pre = reverse_image(post_state,axioms,update)\n pre_case = clauses_case(pre)\n## print \"pre_case1: {}\".format(pre_case)\n pre_case = [cl for cl in pre_case if len(cl) <= 1\n and is_ground_clause(cl)\n and not any(is_skolem(r) for r,n in relations_clause(cl))]\n## print \"pre_case2: {}\".format(pre_case)\n return interpolant(pre_state,pre_case,axioms,interpreted)", "metadata": "root.reverse_interpolant_case", "header": "['module', '___EOS___']", "index": 448 }, { "content": "def interpolant_case(pre_state,post,axioms,interpreted):\n# print \"interpolant_case: before clauses_case\"\n# print \"interpolant_case post: {}\".format(post)\n post_case = clauses_case(post)\n# print \"interpolant_case: after clauses_case\"\n## print \"post_case1: {}\".format(post_case)\n post_case = Clauses([cl for cl in post_case.clauses\n if len(cl) <= 1\n and is_ground_clause(cl)\n and not any(is_skolem(r) for r,n in relations_clause(cl))])\n# print \"interpolant_case: after filtering\"\n# print \"post_case2: {}\".format(post_case)\n return interpolant(pre_state,post_case,axioms,interpreted)", "metadata": "root.interpolant_case", "header": "['module', '___EOS___']", "index": 458 }, { "content": "def interp_from_unsat_core(clauses1,clauses2,core,interpreted):\n used_syms = used_symbols_clauses(core)\n vars = used_variables_clauses(core)\n if vars:\n# print \"interpolant would require skolem constants\"\n return None\n core_consts = used_constants_clauses(core)\n clauses2_consts = used_constants_clauses(clauses2)\n# print \"interp_from_unsat_core core_consts = {}\".format(map(str,core_consts))\n# print \"interp_from_unsat_core clauses2_consts = {}\".format(map(str,clauses2_consts))\n renaming = dict()\n i = 0\n for v in core_consts:\n if v not in clauses2_consts or v.is_skolem(): # and v not in interpreted:\n renaming[v] = Variable('V' + str(i),Constant(v).get_sort())\n i += 1\n# print \"interp_from_unsat_core core = {}\".format(core)\n# print \"interp_from_unsat_core renaming = {}\".format(renaming)\n renamed_core = substitute_constants_clauses(core,renaming)\n# print \"interp_from_unsat_core renamed_core = {}\".format(renamed_core)\n res = simplify_clauses(Clauses([Or(*[negate(c) for c in renamed_core.fmlas])]))\n# print \"interp_from_unsat_core res = {}\".format(res)\n return res", "metadata": "root.interp_from_unsat_core", "header": "['module', '___EOS___']", "index": 472 }, { "content": "def small_model_clauses(cls):\n # Don't try to shrink the integers!\n return get_small_model(cls,ivy_logic.uninterpreted_sorts(),[])", "metadata": "root.small_model_clauses", "header": "['module', '___EOS___']", "index": 496 }, { "content": "class History(object):\n \"\"\" A history is a symbolically represented sequence of states. \"\"\"\n\n\n\n\n", "metadata": "root.History", "header": "['module', '___EOS___']", "index": 500 }, { "content": " def __init__(self,state,maps = []):\n \"\"\" state is the initial state of the history \"\"\"\n# print \"init: {}\".format(state)\n update,clauses,pre = state\n assert update == None and pre.is_false()\n self.maps = maps # sequence of symbol renamings resulting from forward images\n self.post = clauses # characteristic formula of the history", "metadata": "root.History.__init__", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 502 }, { "content": " def forward_step(self,axioms,update):\n \"\"\" This is like forward_image on states, but records the\n symbol renaming used in the forward image. The list of\n renamings is used to reconstruct the state symbols at previous\n times in the history. A new history after forward step is\n returned. \"\"\"\n# print \"step: pre = {}, axioms = {}, update = {}\".format(self.post,axioms,update)\n map1,res = forward_image_map(self.post,axioms,update)\n return History(pure_state(res),self.maps + [map1])", "metadata": "root.History.forward_step", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 511 }, { "content": " def assume(self,clauses):\n \"\"\" Returns a new history in which the final state is constrainted to\n satisfy \"clauses\".\"\"\"\n# print \"assume post: {}\".format(self.post)\n# print \"assume: {}\".format(clauses)\n if isinstance(clauses,tuple): # a pure state\n assert is_pure_state(clauses)\n clauses = clauses[1]\n clauses = rename_distinct(clauses,self.post) # TODO: shouldn't be needed\n return History(pure_state(and_clauses(self.post,clauses)),self.maps)", "metadata": "root.History.assume", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 521 }, { "content": " def ignore(self,s,img,renaming):\n res = not(s in img or not s.is_skolem() and s not in renaming)\n# print \"ignore: {} = {}\".format(s,res)\n return res", "metadata": "root.History.ignore", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 532 }, { "content": " def satisfy(self, axioms, _get_model_clauses=None):\n \"\"\" Produce a state sequence if the symbolic history contains\n one. Returns the sort universes and a sequence of states, or\n None if the history is vacuous. \"\"\"\n\n if _get_model_clauses is None:\n _get_model_clauses = small_model_clauses\n\n# print \"axioms: {}\".format(axioms)\n\n # A model of the post-state embeds a valuation for each time\n # in the history.\n post = and_clauses(self.post,axioms)\n# print \"post: {}\".format(post)\n print \"bounded check {\"\n model = _get_model_clauses(post)\n print \"} bounded check\"\n if model == None:\n# print \"core = {}\".format(unsat_core(post,true_clauses()))\n return None\n\n # we reconstruct the sub-model for each state composing the\n # recorded renamings in reverse order. Here \"renaming\" maps\n # symbols representing a past time onto current time skolems\n renaming,states,maps = {},[],reversed(self.maps)\n while True:\n # ignore all symbols except those representing the given past time\n img = set(renaming[s] for s in renaming if not s.is_skolem())\n ignore = lambda s: self.ignore(s,img,renaming)\n # get the sub-mode for the given past time as a formula\n clauses = clauses_model_to_clauses(post,ignore = ignore, model = model, numerals=use_numerals())\n # map this formula into the past using inverse map\n clauses = rename_clauses(clauses,inverse_map(renaming))\n # remove tautology equalities, TODO: not sure if this is correct here\n clauses = Clauses(\n [f for f in clauses.fmlas if not is_tautology_equality(f)],\n clauses.defs\n )\n states.append(clauses)\n try:\n # update the inverse map by composing it with inverse\n # of the next renaming (in reverse order)\n renaming = compose_maps(next(maps),renaming)\n except StopIteration:\n break\n uvs = model.universes(numerals=use_numerals())\n# print \"uvs: {}\".format(uvs)\n return uvs, [pure_state(clauses) for clauses in reversed(states)]", "metadata": "root.History.satisfy", "header": "['class', 'History', '(', 'object', ')', ':', '___EOS___']", "index": 537 }, { "content": "def use_numerals():\n return iu.use_numerals.get()", "metadata": "root.use_numerals", "header": "['module', '___EOS___']", "index": 587 } ]

[ { "span": "from ivy_utils import UniqueRenamer, union_to_list, list_union, list_diff, IvyError, inverse_map, compose_maps, pretty", "start_line": 30, "start_column": 0, "end_line": 30, "end_column": 118 }, { "span": "from ivy_logic import Variable, Constant, Literal, Atom, Not, And, Or,App, RelationSort, Definition, is_prenex_universal", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 120 }, { "span": "from ivy_logic_utils import used_symbols_clauses, rename_clauses, clauses_using_symbols, simplify_clauses,\\\n used_variables_clauses, used_constants_clauses, substitute_constants_clause, substitute_constants_clauses, constants_clauses,\\\n relations_clauses, eq_lit, condition_clauses, or_clauses, and_clauses, false_clauses, true_clauses,\\\n formula_to_clauses, clauses_to_formula, formula_to_clauses_tseitin, is_ground_clause, \\\n relations_clause, Clauses, sym_inst, negate_clauses, negate", "start_line": 32, "start_column": 0, "end_line": 36, "end_column": 63 }, { "span": "from ivy_solver import unsat_core, clauses_imply, clauses_imply_formula, clauses_sat, clauses_case, get_model_clauses, clauses_model_to_clauses, get_small_model", "start_line": 37, "start_column": 0, "end_line": 37, "end_column": 160 }, { "span": "import ivy_logic_utils as lu", "start_line": 39, "start_column": 0, "end_line": 39, "end_column": 28 } ]

[]

1

false

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", "state", " ", "of", " ", "a", " ", "procedure", " ", "has", " ", "an", " ", "empty", " ", "modifi", "es", " ", "set", ",", "\\", "10", ";", "meaning", " ", "mean", " ", "the", " ", "current", " ", "values", " ", "are", " ", "all", " ", "equal", " ", "to", " ", "the", " ", "initial", " ", "values", ".", "\\", "10", ";", "\\", "10", ";", "An", " ", "update", " ", "is", " ", "represent", "ed", " ", "as", " ", "a", " ", "triple", " ", "(", "mod", ",", "tr", ",", "pre", ")", " ", "where", " ", "mod", " ", "is", " ", "a", " ", "list", "\\", "10", ";", "of", " ", "modifi", "ed", " ", "symbols", " ", "(", "or", " ", "\"", "all", "\")", " ", "and", " ", "tr", " ", "is", " ", "a", " ", "two", "-", "vocab", "ular", "y", " ", "transiti", "on", "\\", "10", ";", "relation", ",", " ", "and", " ", "pre", " ", "is", " ", "a", " ", "one", "-", "vocab", "ular", "y", " ", "precondition", ".", " ", "The", " ", "precondition", "\\", "10", ";", "is", " ", "state", "d", " ", "in", " ", "the", " ", 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Unused import

uwdata/termite-data-server/web2py/scripts/tickets2email.py

[ { "content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\n\nimport sys\nimport os\nimport time\nimport stat\nimport datetime\n\nfrom gluon.utils import md5_hash\nfrom gluon.restricted import RestrictedError\nfrom gluon.tools import Mail\n\n\npath = os.path.join(request.folder, 'errors')\nhashes = {}\nmail = Mail()\n\n### CONFIGURE HERE\nSLEEP_MINUTES = 5\nALLOW_DUPLICATES = True\nmail.settings.server = 'localhost:25'\nmail.settings.sender = 'you@localhost'\nadministrator_email = 'you@localhost'\n### END CONFIGURATION\n\nwhile 1:\n for file in os.listdir(path):\n if not ALLOW_DUPLICATES:\n fileobj = open(file, 'r')\n try:\n file_data = fileobj.read()\n finally:\n fileobj.close()\n key = md5_hash(file_data)\n\n if key in hashes:\n continue\n\n hashes[key] = 1\n\n error = RestrictedError()\n error.load(request, request.application, file)\n\n mail.send(to=administrator_email,\n subject='new web2py ticket', message=error.traceback)\n\n os.unlink(os.path.join(path, file))\n time.sleep(SLEEP_MINUTES * 60)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import sys", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 10 }, { "span": "import stat", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 11 }, { "span": "import datetime", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 15 } ]

[]

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Unused import

mozilla/inventory/api_v2/reverse_dns_handler.py

[ { "content": "from piston.handler import BaseHandler, rc\nfrom systems.models import System, SystemRack,SystemStatus,NetworkAdapter,KeyValue,ScheduledTask\nfrom truth.models import Truth, KeyValue as TruthKeyValue\nfrom MacroExpansion import MacroExpansion\nfrom KeyValueTree import KeyValueTree\nimport re\ntry:\n import json\nexcept:\n from django.utils import simplejson as json\nfrom django.test.client import Client\nfrom settings import API_ACCESS\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ReverseDNSHandler(BaseHandler):\n allowed_methods = API_ACCESS\n model = System\n #fields = ('id', 'asset_tag', 'oob_ip', 'hostname', 'operating_system', ('system_status',('status', 'id')))\n exclude = ()", "metadata": "root.ReverseDNSHandler", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def read(self, request, reverse_dns_zone=None, reverse_dns_action=None):\n if reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones':\n tasks = []\n for task in ScheduledTask.objects.get_all_reverse_dns():\n tasks.append(task.task)\n #ScheduledTask.objects.delete_all_reverse_dns()\n return tasks\n elif reverse_dns_zone and reverse_dns_action == 'get_reverse_dns_zones_with_names':\n truths = Truth.objects.select_related().filter(keyvalue__key='is_reverse_dns_zone',keyvalue__value='True')\n truth_list = []\n for t in truths:\n truth_list.append({'name':t.name.strip(),'description':t.description.strip()})\n return truth_list\n elif reverse_dns_zone and reverse_dns_action == 'view_hosts':\n scope_options = []\n client = Client()\n hosts = json.loads(client.get('/api/keyvalue/?key_type=system_by_zone&zone=%s' % reverse_dns_zone, follow=True).content)\n #print hosts\n adapter_list = []\n for host in hosts:\n if 'hostname' in host:\n the_url = '/api/keyvalue/?key_type=adapters_by_system_and_zone&reverse_dns_zone=%s&system=%s' % (reverse_dns_zone, host['hostname'])\n try:\n adapter_list.append(json.loads(client.get(the_url, follow=True).content))\n except:\n pass\n #d = DHCPInterface(scope_options, adapter_list)\n #return d.get_hosts()\n return None\n else:\n resp = rc.NOT_FOUND\n resp.write(\"I'm sorry but I don't understand your request\")", "metadata": "root.ReverseDNSHandler.read", "header": "['class', 'ReverseDNSHandler', '(', 'BaseHandler', ')', ':', '___EOS___']", "index": 17 } ]

[ { "span": "from systems.models import System, SystemRack,SystemStatus,NetworkAdapter,KeyValue,ScheduledTask", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 96 }, { "span": "from truth.models import Truth, KeyValue as TruthKeyValue", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 57 }, { "span": "from MacroExpansion import MacroExpansion", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 41 }, { "span": "from KeyValueTree import KeyValueTree", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 37 }, { "span": "import re", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 9 } ]

[]

1

false

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Unused import

ImageEngine/gaffer/python/GafferArnoldUI/ArnoldRenderUI.py

[ { "content": "##########################################################################\n#\n# Copyright (c) 2012-2014, John Haddon. All rights reserved.\n#\n# Redistribution and use in source and binary forms, with or without\n# modification, are permitted provided that the following conditions are\n# met:\n#\n# * Redistributions of source code must retain the above\n# copyright notice, this list of conditions and the following\n# disclaimer.\n#\n# * Redistributions in binary form must reproduce the above\n# copyright notice, this list of conditions and the following\n# disclaimer in the documentation and/or other materials provided with\n# the distribution.\n#\n# * Neither the name of John Haddon nor the names of\n# any other contributors to this software may be used to endorse or\n# promote products derived from this software without specific prior\n# written permission.\n#\n# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS\n# IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,\n# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR\n# PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR\n# CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,\n# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,\n# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR\n# PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF\n# LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING\n# NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS\n# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n#\n##########################################################################\n\nimport IECore\n\nimport Gaffer\nimport GafferUI\nimport GafferArnold\n\nGaffer.Metadata.registerNode(\n\n\tGafferArnold.ArnoldRender,\n\n\t\"description\",\n\t\"\"\"\n\tPerforms offline batch rendering using the\n\tArnold renderer. This is done in two phases -\n\tfirst a .ass file is generated and then Arnold\n\tis invoked to render it. Note though that the .ass\n\tfile is lightweight, and contains little more than\n\ta procedural which will use Gaffer to generate the\n\tscene at render time.\n\t\"\"\",\n\n\tplugs = {\n\n\t\t\"mode\" : [\n\n\t\t\t\"description\",\n\t\t\t\"\"\"\n\t\t\tWhen in the standard \"Render\" mode, an .ass\n\t\t\tfile is generated and then renderered in Arnold.\n\t\t\tAlternatively, just the .ass file can be generated\n\t\t\tand then another method can be used to post-process\n\t\t\tit or launch the render - a SystemCommand node may\n\t\t\tbe useful for this. Finally, an expanded .ass file\n\t\t\tmay be generated - this will contain the entire\n\t\t\texpanded scene rather than just a procedural, and can\n\t\t\tbe useful for debugging.\n\t\t\t\"\"\",\n\n\t\t\t\"preset:Render\", \"render\",\n\t\t\t\"preset:Generate .ass only\", \"generate\",\n\t\t\t\"preset:Generate expanded .ass\", \"expand\",\n\n\t\t\t\"nodule:type\", \"\",\n\t\t\t\"plugValueWidget:type\", \"GafferUI.PresetsPlugValueWidget\",\n\n\t\t],\n\n\t\t\"fileName\" : [\n\n\t\t\t\"description\",\n\t\t\t\"\"\"\n\t\t\tThe name of the .ass file to be generated.\n\t\t\t\"\"\",\n\n\t\t\t\"nodule:type\", \"\",\n\t\t\t\"plugValueWidget:type\", \"GafferUI.FileSystemPathPlugValueWidget\",\n\t\t\t\"pathPlugValueWidget:bookmarks\", \"ass\",\n\t\t\t\"pathPlugValueWidget:leaf\", True,\n\t\t\t\"fileSystemPathPlugValueWidget:extensions\", IECore.StringVectorData( [ \"ass\" ] ),\n\n\t\t],\n\n\t\t\"verbosity\" : [\n\n\t\t\t\"description\",\n\t\t\t\"\"\"\n\t\t\tControls the verbosity of the Arnold renderer output.\n\t\t\t\"\"\",\n\n\t\t\t\"preset:0\", 0,\n\t\t\t\"preset:1\", 1,\n\t\t\t\"preset:2\", 2,\n\t\t\t\"preset:3\", 3,\n\t\t\t\"preset:4\", 4,\n\t\t\t\"preset:5\", 5,\n\t\t\t\"preset:6\", 6,\n\n\t\t\t\"nodule:type\", \"\",\n\t\t\t\"plugValueWidget:type\", \"GafferUI.PresetsPlugValueWidget\",\n\n\t\t],\n\n\t}\n\n)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import GafferUI", "start_line": 39, "start_column": 0, "end_line": 39, "end_column": 15 } ]

[]

1

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Variable defined multiple times

zeaphoo/cocopot/tests/test_compat.py

[ { "content": "def test_compat():\n assert to_bytes(None) == None\n assert to_unicode(None) == None\n with pytest.raises(ZeroDivisionError):\n try:\n s = 1/0\n except:\n exc_type, exc_value, tb = sys.exc_info()\n reraise(exc_type, exc_value, tb)\n\n with pytest.raises(ZeroDivisionError):\n try:\n s = 1/0\n except:\n exc_type, exc_value, tb = sys.exc_info()\n reraise(exc_type, exc_value, None)", "metadata": "root.test_compat", "header": "['module', '___EOS___']", "index": 7 } ]

[ { "span": "s ", "start_line": 12, "start_column": 12, "end_line": 12, "end_column": 13 } ]

[]

1

true

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Unused import

vivekn/sentiment/info.py

[ { "content": "from __future__ import division\nfrom math import log, exp\nfrom operator import mul\nfrom collections import Counter\nimport os\nimport pylab\nimport cPickle\n\n\n\npos = MyDict()\nneg = MyDict()\nfeatures = set()\ntotals = [0, 0]\ndelchars = ''.join(c for c in map(chr, range(128)) if not c.isalnum())\n\nCDATA_FILE = \"countdata.pickle\"\nFDATA_FILE = \"reduceddata.pickle\"\n\n\n\n\n\n\n\n\n\n\n\n\n\nif __name__ == '__main__':\n train()\n feature_selection_trials()\n # test_pang_lee()\n # classify_demo(open(\"pos_example\").read())\n # classify_demo(open(\"neg_example\").read())\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class MyDict(dict):", "metadata": "root.MyDict", "header": "['module', '___EOS___']", "index": 9 }, { "content": " def __getitem__(self, key):\n if key in self:\n return self.get(key)\n return 0", "metadata": "root.MyDict.__getitem__", "header": "['class', 'MyDict', '(', 'dict', ')', ':', '___EOS___']", "index": 10 }, { "content": "def negate_sequence(text):\n \"\"\"\n Detects negations and transforms negated words into \"not_\" form.\n \"\"\"\n negation = False\n delims = \"?.,!:;\"\n result = []\n words = text.split()\n prev = None\n pprev = None\n for word in words:\n # stripped = word.strip(delchars)\n stripped = word.strip(delims).lower()\n negated = \"not_\" + stripped if negation else stripped\n result.append(negated)\n if prev:\n bigram = prev + \" \" + negated\n result.append(bigram)\n if pprev:\n trigram = pprev + \" \" + bigram\n result.append(trigram)\n pprev = prev\n prev = negated\n\n if any(neg in word for neg in [\"not\", \"n't\", \"no\"]):\n negation = not negation\n\n if any(c in word for c in delims):\n negation = False\n\n return result", "metadata": "root.negate_sequence", "header": "['module', '___EOS___']", "index": 25 }, { "content": "def train():\n global pos, neg, totals\n retrain = False\n \n # Load counts if they already exist.\n if not retrain and os.path.isfile(CDATA_FILE):\n pos, neg, totals = cPickle.load(open(CDATA_FILE))\n return\n\n limit = 12500\n for file in os.listdir(\"./aclImdb/train/pos\")[:limit]:\n for word in set(negate_sequence(open(\"./aclImdb/train/pos/\" + file).read())):\n pos[word] += 1\n neg['not_' + word] += 1\n for file in os.listdir(\"./aclImdb/train/neg\")[:limit]:\n for word in set(negate_sequence(open(\"./aclImdb/train/neg/\" + file).read())):\n neg[word] += 1\n pos['not_' + word] += 1\n \n prune_features()\n\n totals[0] = sum(pos.values())\n totals[1] = sum(neg.values())\n \n countdata = (pos, neg, totals)\n cPickle.dump(countdata, open(CDATA_FILE, 'w'))", "metadata": "root.train", "header": "['module', '___EOS___']", "index": 58 }, { "content": "def classify(text):\n words = set(word for word in negate_sequence(text) if word in features)\n if (len(words) == 0): return True\n # Probability that word occurs in pos documents\n pos_prob = sum(log((pos[word] + 1) / (2 * totals[0])) for word in words)\n neg_prob = sum(log((neg[word] + 1) / (2 * totals[1])) for word in words)\n return pos_prob > neg_prob", "metadata": "root.classify", "header": "['module', '___EOS___']", "index": 85 }, { "content": "def classify2(text):\n \"\"\"\n For classification from pretrained data\n \"\"\"\n words = set(word for word in negate_sequence(text) if word in pos or word in neg)\n if (len(words) == 0): return True\n # Probability that word occurs in pos documents\n pos_prob = sum(log((pos[word] + 1) / (2 * totals[0])) for word in words)\n neg_prob = sum(log((neg[word] + 1) / (2 * totals[1])) for word in words)\n return pos_prob > neg_prob", "metadata": "root.classify2", "header": "['module', '___EOS___']", "index": 93 }, { "content": "def classify_demo(text):\n words = set(word for word in negate_sequence(text) if word in pos or word in neg)\n if (len(words) == 0): \n print \"No features to compare on\"\n return True\n\n pprob, nprob = 0, 0\n for word in words:\n pp = log((pos[word] + 1) / (2 * totals[0]))\n np = log((neg[word] + 1) / (2 * totals[1]))\n print \"%15s %.9f %.9f\" % (word, exp(pp), exp(np))\n pprob += pp\n nprob += np\n\n print (\"Positive\" if pprob > nprob else \"Negative\"), \"log-diff = %.9f\" % abs(pprob - nprob)", "metadata": "root.classify_demo", "header": "['module', '___EOS___']", "index": 104 }, { "content": "def MI(word):\n \"\"\"\n Compute the weighted mutual information of a term.\n \"\"\"\n T = totals[0] + totals[1]\n W = pos[word] + neg[word]\n I = 0\n if W==0:\n return 0\n if neg[word] > 0:\n # doesn't occur in -ve\n I += (totals[1] - neg[word]) / T * log ((totals[1] - neg[word]) * T / (T - W) / totals[1])\n # occurs in -ve\n I += neg[word] / T * log (neg[word] * T / W / totals[1])\n if pos[word] > 0:\n # doesn't occur in +ve\n I += (totals[0] - pos[word]) / T * log ((totals[0] - pos[word]) * T / (T - W) / totals[0])\n # occurs in +ve\n I += pos[word] / T * log (pos[word] * T / W / totals[0])\n return I", "metadata": "root.MI", "header": "['module', '___EOS___']", "index": 120 }, { "content": "def get_relevant_features():\n pos_dump = MyDict({k: pos[k] for k in pos if k in features})\n neg_dump = MyDict({k: neg[k] for k in neg if k in features})\n totals_dump = [sum(pos_dump.values()), sum(neg_dump.values())]\n return (pos_dump, neg_dump, totals_dump)", "metadata": "root.get_relevant_features", "header": "['module', '___EOS___']", "index": 141 }, { "content": "def prune_features():\n \"\"\"\n Remove features that appear only once.\n \"\"\"\n global pos, neg\n for k in pos.keys():\n if pos[k] <= 1 and neg[k] <= 1:\n del pos[k]\n\n for k in neg.keys():\n if neg[k] <= 1 and pos[k] <= 1:\n del neg[k]", "metadata": "root.prune_features", "header": "['module', '___EOS___']", "index": 147 }, { "content": "def feature_selection_trials():\n \"\"\"\n Select top k features. Vary k and plot data\n \"\"\"\n global pos, neg, totals, features\n retrain = True\n\n if not retrain and os.path.isfile(FDATA_FILE):\n pos, neg, totals = cPickle.load(open(FDATA_FILE))\n return\n\n words = list(set(pos.keys() + neg.keys()))\n print \"Total no of features:\", len(words)\n words.sort(key=lambda w: -MI(w))\n num_features, accuracy = [], []\n bestk = 0\n limit = 500\n path = \"./aclImdb/test/\"\n step = 500\n start = 20000\n best_accuracy = 0.0\n for w in words[:start]:\n features.add(w)\n for k in xrange(start, 40000, step):\n for w in words[k:k+step]:\n features.add(w)\n correct = 0\n size = 0\n\n for file in os.listdir(path + \"pos\")[:limit]:\n correct += classify(open(path + \"pos/\" + file).read()) == True\n size += 1\n\n for file in os.listdir(path + \"neg\")[:limit]:\n correct += classify(open(path + \"neg/\" + file).read()) == False\n size += 1\n\n num_features.append(k+step)\n accuracy.append(correct / size)\n if (correct / size) > best_accuracy:\n bestk = k\n print k+step, correct / size\n\n features = set(words[:bestk])\n cPickle.dump(get_relevant_features(), open(FDATA_FILE, 'w'))\n\n pylab.plot(num_features, accuracy)\n pylab.show()", "metadata": "root.feature_selection_trials", "header": "['module', '___EOS___']", "index": 160 }, { "content": "def test_pang_lee():\n \"\"\"\n Tests the Pang Lee dataset\n \"\"\"\n total, correct = 0, 0\n for fname in os.listdir(\"txt_sentoken/pos\"):\n correct += int(classify2(open(\"txt_sentoken/pos/\" + fname).read()) == True)\n total += 1\n for fname in os.listdir(\"txt_sentoken/neg\"):\n correct += int(classify2(open(\"txt_sentoken/neg/\" + fname).read()) == False)\n total += 1\n print \"accuracy: %f\" % (correct / total)", "metadata": "root.test_pang_lee", "header": "['module', '___EOS___']", "index": 209 } ]

[ { "span": "from operator import mul", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 24 }, { "span": "from collections import Counter", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 31 } ]

[]

1

false

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Unused import

openstack/bandit/examples/xml_lxml.py

[ { "content": "import lxml.etree\nimport lxml\nfrom lxml import etree\nfrom defusedxml.lxml import fromstring\nfrom defuxedxml import lxml as potatoe\n\nxmlString = \"<note>\\n<to>Tove</to>\\n<from>Jani</from>\\n<heading>Reminder</heading>\\n<body>Don't forget me this weekend!</body>\\n</note>\"\nroot = lxml.etree.fromstring(xmlString)\nroot = fromstring(xmlString)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from lxml import etree", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 22 }, { "span": "from defuxedxml import lxml as potatoe", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 38 } ]

[]

1

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Unused local variable

networkdynamics/zenlib/src/zen/io/gml.py

[ { "content": "def build_graph(graph_tree, weight_fxn):\n\n\t# What kind of graph is being built?\n\tis_bipartite = bool('bipartite' in graph_tree and graph_tree['bipartite'])\n\tis_directed = bool('directed' in graph_tree and graph_tree['directed'])\n\n\tif is_bipartite:\n\t\tG = BipartiteGraph()\n\n\telif is_directed:\n\t\tG = DiGraph()\n\n\telse:\n\t\tG = Graph()\n\n\t# Build the nodes\n\tif 'node' in graph_tree:\n\n\t\t# get the list of nodes\n\t\tnodes = graph_tree['node']\n\n\t\t# ensure the node-list is a list (needed if there's only one node)\n\t\tif not isinstance(nodes, list):\n\t\t\tnodes = [ nodes ]\n\n\t\t# Build each node and add to the graph\n\t\tfor node in nodes:\t\n\n\t\t\t# Does the node have an id?\n\t\t\thas_id = True\n\t\t\thas_valid_id = True\n\t\t\tif 'id' not in node:\n\t\t\t\thas_id = False\n\t\t\t\thas_valid_id = False\n\n\t\t\t# We can only use positive integer node ids as graph idx\n\t\t\t# If that's not the case, treat it like any other attribute\n\t\t\telif not isinstance(node['id'], int) or node['id'] < 0:\n\t\t\t\thas_valid_id = False\n\n\t\t\t# Got a valid node id\n\t\t\tnode_idx = node['id']\n\n\t\t\t# For bipartite graphs determine which node set this belongs to \n\t\t\tif is_bipartite:\n\t\t\t\tis_in_U = node['isInU']\n\n\t\t\t# collect and verify all the node properties\n\t\t\tstandard_keys = set(['id', 'name', 'zenData'])\n\t\t\tnode_data = {}\n\t\t\tnode_obj = None\n\t\t\tzen_data = None\n\n\t\t\tfor key, val in node.items():\n\n\t\t\t\tif key == 'name':\n\t\t\t\t\tnode_obj = val\n\n\t\t\t\t# give preference to 'name' as source of node_obj\n\t\t\t\telif key == 'label' and node_obj is None: \t\n\t\t\t\t\tnode_obj = val\n\n\t\t\t\telif key == 'zenData':\n\t\t\t\t\tzen_data = val\n\t\t\t\t\n\t\t\t\t# node_data is dict of all other attributes\n\t\t\t\telse:\t\n\t\t\t\t\tnode_data[key] = val \t\n\n\t\t\t# _set_ to node_data else _append_\n\t\t\tif zen_data is not None:\n\t\t\t\tif len(node_data) == 0:\n\t\t\t\t\tnode_data = zen_data\n\t\t\t\telse:\n\t\t\t\t\tnode_data['zenData'] = zen_data\n\n\t\t\telif len(node_data) == 0:\n\t\t\t\tnode_data = None\n\n\t\t\t# make sure that the node object is hashable otherwise put it\n\t\t\tif not isinstance(node_obj, basestring) and node_obj is not None:\n\n\t\t\t\tif not isinstance(node_obj, Hashable):\\\n\n\t\t\t\t\tif not isinstance(node_obj, Iterable):\n\t\t\t\t\t\tnode_obj = None\n\n\t\t\t\t\telse:\n\t\t\t\t\t\tnode_obj = tuple(node_obj)\n\n\n\t\t\t# For bipartite graph, this insertion method does not guarantee \n\t\t\t# that indices will be unchanged after a read-write cycle\n\t\t\tif is_bipartite:\n\t\t\t\tG.add_node_by_class(is_in_U, node_obj, node_data)\n\n\t\t\telif has_id and has_valid_id:\n\t\t\t\tif is_directed:\n\t\t\t\t\tG.add_node_x(node_idx, G.edge_list_capacity,\n\t\t\t\t\t\tG.edge_list_capacity, node_obj,node_data)\n\n\t\t\t\telse:\n\t\t\t\t\tG.add_node_x(node_idx, G.edge_list_capacity, node_obj, \n\t\t\t\t\t\tnode_data)\n\n\t\t\telse:\n\t\t\t\tif G.is_directed:\n\t\t\t\t\tG.add_node(nobj=node_obj, data=node_data)\n\n\t\t\t\telse:\n\t\t\t\t\tG.add_node(nobj=node_obj, data=node_data)\n\n\t# add edges\n\tif 'edge' in graph_tree:\n\n\t\t# ensure edge list is a list (needed if there is only one edge)\n\t\tedges = graph_tree['edge']\n\t\tif not isinstance(edges, list):\n\t\t\tedges = [ edges ]\n\n\t\t# iterate over the edges, add each one to the graph\n\t\tfor edge in edges:\n\n\t\t\t# make sure source and target are specified\n\t\t\tsource = None\n\t\t\ttarget = None\n\t\t\tif 'source' not in edge:\n\t\t\t\traise ZenException('Edge is missing the source attribute '\\\n\t\t\t\t\t'(edge = %s)' % str(edge))\n\n\t\t\tif 'target' not in edge:\n\t\t\t\traise ZenException('Edge is missing the target attribute '\\\n\t\t\t\t\t'(edge = %s)' % str(edge))\n\n\t\t\tweight = 1\n\t\t\tedge_idx = None\n\t\t\tzen_data = None\n\t\t\tedge_data = {}\n\n\t\t\tfor key, val in edge.items():\n\n\t\t\t\tif key == 'id':\n\t\t\t\t\tedge_idx = val\n\t\t\t\t\tif type(val) != int:\n\t\t\t\t\t\traise ZenException('Edge id attribute must be a '\\\n\t\t\t\t\t\t\t'positive integer (edge = %s)' % str(edge))\n\n\t\t\t\telif key == 'source':\n\t\t\t\t\tsource = val\n\t\t\t\t\tif type(val) != int or val < 0:\n\t\t\t\t\t\traise ZenException('Edge source attribute must be a '\\\n\t\t\t\t\t\t\t'positive integer (edge = %s)' % str(edge))\n\n\t\t\t\telif key == 'target':\n\t\t\t\t\ttarget = val\n\t\t\t\t\tif type(val) != int or val < 0:\n\t\t\t\t\t\traise ZenException('Edge target attribute must be a '\\\n\t\t\t\t\t\t\t'positive integer (edge = %s)' % str(edge))\n\n\t\t\t\telif key == 'weight':\n\t\t\t\t\tweight = float(val)\n\n\t\t\t\telif key == 'zenData':\n\t\t\t\t\tzen_data = val\n\n\t\t\t\t# edge_data is dict of all other attributes\n\t\t\t\telse: \n\t\t\t\t\tedge_data[key] = val \t\n\n\t\t\t# give precedence to a weight-getting function if provided\n\t\t\tif weight_fxn != None:\n\t\t\t\tweight = weight_fxn(edge)\n\n\t\t\t# if zenData is only other attribute aside from those handled above \n\t\t\t# _set_ to edge_data else _append_\n\t\t\tif zen_data is not None:\n\t\t\t\tif len(edge_data) == 0:\n\t\t\t\t\tedge_data = zen_data\n\t\t\t\telse:\n\t\t\t\t\tedge_data['zenData'] = zen_data\n\n\t\t\telif len(edge_data) == 0:\n\t\t\t\tedge_data = None;\n\n\t\t\tif edge_idx != None:\n\t\t\t\tG.add_edge_x(edge_idx,source,target,edge_data,weight)\n\t\t\telse:\n\t\t\t\tG.add_edge_(source,target,edge_data,weight)\n\n\treturn G", "metadata": "root.build_graph", "header": "['module', '___EOS___']", "index": 313 } ]

[ { "span": "standard_keys ", "start_line": 361, "start_column": 3, "end_line": 361, "end_column": 16 } ]

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Module is imported with 'import' and 'import from'

gmr/tinman/tinman/session.py

[ { "content": "\"\"\"\nTinman session classes for the management of session data\n\n\"\"\"\nfrom tornado import gen\nimport logging\nimport os\nfrom os import path\nimport tempfile\nimport time\nimport uuid\n\nfrom tinman import config\nfrom tinman import exceptions\nfrom tinman import mapping\n\nLOGGER = logging.getLogger(__name__)\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import os", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 9 } ]

[]

1

true

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Imprecise assert

Knewton/pettingzoo-python/pettingzoo/tests/test_discovery.py

[ { "content": "\tdef test_load_config_with_callback(self):\n\t\tself.touched = False\n\t\tself.cbpath = None\n\t\tself.cbconfig = None\n\t\tevent = threading.Event()\n\t\tdef callback(path, config):\n\t\t\tself.touched = True\n\t\t\tself.cbpath = path\n\t\t\tself.cbconfig = config\n\t\t\tevent.set()\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', self.sample, '127.0.0.1')\n\t\tddc = pettingzoo.discovery.DistributedDiscovery(self.connection)\n\t\tconfig = ddc.load_config('mysql', 'reports', callback=callback)\n\t\tsample2 = {\n\t\t\t'header': {\n\t\t\t\t'service_class': 'mysql', 'metadata': {'version': 1.0}\n\t\t\t},\n\t\t\t'username': 'reports',\n\t\t\t'host': 'notlocalhost',\n\t\t\t'port': 3306,\n\t\t\t'password': 'reports',\n\t\t\t'database': 'reports',\n\t\t\t'encoding': 'utf8'\n\t\t}\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', sample2, '127.0.0.2')\n\t\tevent.wait(0.25)\n\t\tself.assertTrue(self.touched)\n\t\tself.assertEqual(self.cbpath, '/test_discovery/mysql/reports')\n\t\tconfig = self.cbconfig\n\t\tself.assertTrue(config['host'] in ['localhost', 'notlocalhost'])\n\t\tmismatch_keys = [\n\t\t\tkey for key in self.sample\n\t\t\t\tif not key in config or self.sample[key] != config[key]]\n\t\tfor key in mismatch_keys:\n\t\t\tself.assertTrue(key in ['host', 'header'])", "metadata": "root.DistributedDiscoveryTests.test_load_config_with_callback", "header": "['class', 'DistributedDiscoveryTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 137 }, { "content": "\tdef test_load_config_with_multiple_entries(self):\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', self.sample, '127.0.0.1')\n\t\tsample2 = {\n\t\t\t'header': {\n\t\t\t\t'service_class': 'mysql', 'metadata': {'version': 1.0}\n\t\t\t},\n\t\t\t'username': 'reports',\n\t\t\t'host': 'notlocalhost',\n\t\t\t'port': 3306,\n\t\t\t'password': 'reports',\n\t\t\t'database': 'reports',\n\t\t\t'encoding': 'utf8'\n\t\t}\n\t\tpettingzoo.discovery.write_distributed_config(\n\t\t\tself.connection, 'mysql', 'reports', sample2, '127.0.0.2')\n\t\tddc = pettingzoo.discovery.DistributedDiscovery(self.connection)\n\t\tconfig = ddc.load_config('mysql', 'reports')\n\t\tmismatch_keys = [\n\t\t\tkey for key in self.sample\n\t\t\t\tif not key in config or self.sample[key] != config[key]]\n\t\tfor key in mismatch_keys:\n\t\t\tself.assertTrue(key in ['host', 'header'])", "metadata": "root.DistributedDiscoveryTests.test_load_config_with_multiple_entries", "header": "['class', 'DistributedDiscoveryTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 175 }, { "content": "\tdef test_config_file_list_fallback_dc(self):\n\t\tddc = pettingzoo.discovery.DistributedDiscovery(self.connection)\n\t\tconfig = ddc.load_config('mysql', 'list')\n\t\tself.assertEquals(config, self.sample)\n\t\tconfig = ddc.load_config('mysql', 'mlist')\n\t\tself.assertTrue(config in [self.sample, self.sample2])", "metadata": "root.FileFallbackTests.test_config_file_list_fallback_dc", "header": "['class', 'FileFallbackTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 333 } ]

[ { "span": "self.assertTrue(config['host'] in ['localhost', 'notlocalhost'])", "start_line": 168, "start_column": 2, "end_line": 168, "end_column": 66 }, { "span": "self.assertTrue(key in ['host', 'header'])", "start_line": 173, "start_column": 3, "end_line": 173, "end_column": 45 }, { "span": "self.assertTrue(key in ['host', 'header'])", "start_line": 197, "start_column": 3, "end_line": 197, "end_column": 45 }, { "span": "self.assertTrue(config in [self.sample, self.sample2])", "start_line": 338, "start_column": 2, "end_line": 338, "end_column": 56 } ]

[]

1

true

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Redundant comparison

Tanganelli/CoAPthon/coapthon/messages/message.py

[ { "content": " @block1.setter\n def block1(self, value):\n \"\"\"\n Set the Block1 option.\n\n :param value: the Block1 value\n \"\"\"\n option = Option()\n option.number = defines.OptionRegistry.BLOCK1.number\n num, m, size = value\n if size > 512:\n szx = 6\n elif 256 < size <= 512:\n szx = 5\n elif 128 < size <= 256:\n szx = 4\n elif 64 < size <= 128:\n szx = 3\n elif 32 < size <= 64:\n szx = 2\n elif 16 < size <= 32:\n szx = 1\n else:\n szx = 0\n\n value = (num << 4)\n value |= (m << 3)\n value |= szx\n\n option.value = value\n self.add_option(option)", "metadata": "root.Message.block1", "header": "['class', 'Message', '(', 'object', ')', ':', '___EOS___']", "index": 500 }, { "content": " @block2.setter\n def block2(self, value):\n option = Option()\n option.number = defines.OptionRegistry.BLOCK2.number\n num, m, size = value\n if size > 512:\n szx = 6\n elif 256 < size <= 512:\n szx = 5\n elif 128 < size <= 256:\n szx = 4\n elif 64 < size <= 128:\n szx = 3\n elif 32 < size <= 64:\n szx = 2\n elif 16 < size <= 32:\n szx = 1\n else:\n szx = 0\n\n value = (num << 4)\n value |= (m << 3)\n value |= szx\n\n option.value = value\n self.add_option(option)", "metadata": "root.Message.block2", "header": "['class', 'Message', '(', 'object', ')', ':', '___EOS___']", "index": 548 } ]

[ { "span": "256 < size <= 512:", "start_line": 512, "start_column": 13, "end_line": 512, "end_column": 30 }, { "span": "256 < size <= 512:", "start_line": 555, "start_column": 13, "end_line": 555, "end_column": 30 } ]

[ { "span": "size > 512:", "start_line": 510, "start_column": 11, "end_line": 510, "end_column": 21 }, { "span": "size > 512:", "start_line": 553, "start_column": 11, "end_line": 553, "end_column": 21 } ]

1

true

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Suspicious unused loop iteration variable

sahana/eden/modules/tests/smoke/broken_links.py

[ { "content": " def report_timings_summary(self,\n summary,\n summary_file_name = None,\n mean_threshold = 1):\n \"\"\"\n This will extract the details from the sheet and optionally save\n them to a summary file\n\n summary: the summary details returned from the spreadsheet (read_timings_sheet)\n summary_file_name: name of the file to record the summary details (if required)\n mean_threshold: The minimum number of values required to include\n the mean in the regression calculations\n \"\"\"\n import numpy\n import datetime\n good_values = []\n other_values = []\n total_values = []\n for date in summary[\"date\"]:\n good_values.append([])\n other_values.append([])\n total_values.append([])\n for (url,results) in summary.items():\n if url == \"date\":\n continue\n else:\n cnt = 0\n for (duration, broken) in results:\n if duration != \"\":\n total_values[cnt].append(duration)\n if broken:\n other_values[cnt].append(duration)\n else:\n good_values[cnt].append(duration)\n cnt += 1\n # get the number of days each entry is after the first date\n # and calculate the average, if the average is NAN then ignore both\n date_summary = []\n gv_mean = []\n gv_std = []\n gv_date = []\n cnt = 0\n start = datetime.datetime.strptime(summary[\"date\"][0],\"%Y-%m-%d\")\n for list in good_values:\n if len(list) > mean_threshold:\n mean = numpy.mean(list)\n std = numpy.std(list)\n if not numpy.isnan(mean):\n this_date = datetime.datetime.strptime(summary[\"date\"][cnt],\"%Y-%m-%d\")\n date_summary.append((this_date - start).days)\n gv_mean.append(mean)\n gv_std.append(std)\n gv_date.append(summary[\"date\"][cnt])\n cnt += 1\n # calculate the regression line\n if len(gv_mean) > 2:\n (m,b) = numpy.polyfit(date_summary, gv_mean, 1)\n else:\n m = b = 0\n\n if summary_file_name != None:\n book = self.write_timings_sheet(summary)\n sheet = book.add_sheet(\"summary\")\n row = 0\n for date in gv_date:\n sheet.write(row,0,str(date))\n sheet.write(row,1,gv_mean[row])\n row += 1\n sheet.write(row,0,\"Trend\")\n sheet.write(row,1,m)\n # Save the details to the summary file\n book.save(summary_file_name)\n return (date_summary, gv_mean, gv_std, m, b)", "metadata": "root.BrokenLinkTest.report_timings_summary", "header": "['class', 'BrokenLinkTest', '(', 'Web2UnitTest', ')', ':', '___EOS___']", "index": 403 } ]

[ { "span": "for date in summary[\"date\"]:", "start_line": 421, "start_column": 8, "end_line": 421, "end_column": 36 } ]

[]

1

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Except block handles 'BaseException'

django-erp/django-erp/djangoerp/core/views.py

[ { "content": " def get_success_url(self):\n try:\n return self.request.GET.get('next', self.success_url or clean_http_referer(self.request))\n except:\n return super(SetSuccessUrlMixin, self).get_success_url()", "metadata": "root.SetSuccessUrlMixin.get_success_url", "header": "['class', 'SetSuccessUrlMixin', '(', 'object', ')', ':', '___EOS___']", "index": 45 } ]

[ { "span": "except:", "start_line": 48, "start_column": 8, "end_line": 48, "end_column": 15 } ]

[]

1

true

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Unused local variable

diefenbach/django-lfs/lfs/marketing/tests.py

[ { "content": " def test_topseller_3(self):\n \"\"\"Tests general topseller with explicitly assigned products which\n are also in calculated topsellers.\n \"\"\"\n ts = lfs.marketing.utils.get_topseller(2)\n\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)\n\n # Explicit topseller P4, which is already a topseller\n t = Topseller.objects.create(product=self.p4, position=1)\n\n # P4 should only displayed once\n ts = lfs.marketing.utils.get_topseller(2)\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)", "metadata": "root.TopsellerUtilsTestCase.test_topseller_3", "header": "['class', 'TopsellerUtilsTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 170 }, { "content": " def test_topseller_for_category_3(self):\n \"\"\"Tests the top seller for specific categories. With explicitly\n selected products and ca\n \"\"\"\n # Tests the top level category\n ts = lfs.marketing.utils.get_topseller_for_category(self.c1, limit=2)\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)\n\n # Explicit topseller P4 for c1, which is already a topseller\n t = Topseller.objects.create(product=self.p4, position=1)\n\n # Tests the top level category\n ts = lfs.marketing.utils.get_topseller_for_category(self.c1, limit=2)\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)\n\n # Tests the direct categories\n ts = lfs.marketing.utils.get_topseller_for_category(self.c12, limit=2)\n self.assertEqual(len(ts), 2)\n\n self.assertEqual(ts[0], self.p4)\n self.assertEqual(ts[1], self.p3)", "metadata": "root.TopsellerUtilsTestCase.test_topseller_for_category_3", "header": "['class', 'TopsellerUtilsTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 268 } ]

[ { "span": "t ", "start_line": 182, "start_column": 8, "end_line": 182, "end_column": 9 }, { "span": "t ", "start_line": 280, "start_column": 8, "end_line": 280, "end_column": 9 } ]

[]

1

true

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Imprecise assert

myusuf3/delorean/tests/delorean_tests.py

[ { "content": " def test_lt(self):\n dt1 = self.do\n dt2 = delorean.Delorean()\n self.assertTrue(dt1 < dt2)", "metadata": "root.DeloreanTests.test_lt", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 611 }, { "content": " def test_gt(self):\n dt1 = self.do\n dt2 = delorean.Delorean()\n self.assertTrue(dt2 > dt1)", "metadata": "root.DeloreanTests.test_gt", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 616 }, { "content": " def test_ge(self):\n dt = datetime.utcnow()\n dt1 = delorean.Delorean(dt, timezone=\"UTC\")\n dt2 = delorean.Delorean(dt, timezone=\"UTC\")\n dt3 = self.do\n self.assertTrue(dt2 >= dt1)\n self.assertTrue(dt1 >= dt3)", "metadata": "root.DeloreanTests.test_ge", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 621 }, { "content": " def test_le(self):\n dt = datetime.utcnow()\n dt1 = delorean.Delorean(dt, timezone=\"UTC\")\n dt2 = delorean.Delorean(dt, timezone=\"UTC\")\n dt3 = self.do\n self.assertTrue(dt2 <= dt1)\n self.assertTrue(dt3 <= dt2)", "metadata": "root.DeloreanTests.test_le", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 629 }, { "content": " def test_stops_bymonth(self):\n \"\"\"Test if create stops, checks bymonth, bymonthday, count\n and start parameters work properly\n \"\"\"\n days = list(delorean.interface.stops(\n delorean.MONTHLY,\n bymonth=(1, 4, 7, 10),\n bymonthday=15,\n count=4,\n start=datetime(datetime.now().year, 1, 1))\n )\n year = datetime.now().year\n day = 15\n dt1 = datetime(year, 1, day)\n dt4 = datetime(year, 4, day)\n dt7 = datetime(year, 7, day)\n dt10 = datetime(year, 10, day)\n\n self.assertTrue(len(days) == 4)\n dl1 = delorean.Delorean(datetime=dt1, timezone='UTC')\n self.assertEqual(days[0], dl1)\n\n dl4 = delorean.Delorean(datetime=dt4, timezone='UTC')\n self.assertEqual(days[1], dl4)\n\n dl7 = delorean.Delorean(datetime=dt7, timezone='UTC')\n self.assertEqual(days[2], dl7)\n\n dl10 = delorean.Delorean(datetime=dt10, timezone='UTC')\n self.assertEqual(days[3], dl10)", "metadata": "root.DeloreanTests.test_stops_bymonth", "header": "['class', 'DeloreanTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 721 } ]

[ { "span": "self.assertTrue(dt1 < dt2)", "start_line": 614, "start_column": 8, "end_line": 614, "end_column": 34 }, { "span": "self.assertTrue(dt2 > dt1)", "start_line": 619, "start_column": 8, "end_line": 619, "end_column": 34 }, { "span": "self.assertTrue(dt2 >= dt1)", "start_line": 626, "start_column": 8, "end_line": 626, "end_column": 35 }, { "span": "self.assertTrue(dt1 >= dt3)", "start_line": 627, "start_column": 8, "end_line": 627, "end_column": 35 }, { "span": "self.assertTrue(dt2 <= dt1)", "start_line": 634, "start_column": 8, "end_line": 634, "end_column": 35 }, { "span": "self.assertTrue(dt3 <= dt2)", "start_line": 635, "start_column": 8, "end_line": 635, "end_column": 35 }, { "span": "self.assertTrue(len(days) == 4)", "start_line": 739, "start_column": 8, "end_line": 739, "end_column": 39 } ]

[]

1

true

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Unused import

mattupstate/flask-security/flask_security/decorators.py

[ { "content": "# -*- coding: utf-8 -*-\n\"\"\"\n flask_security.decorators\n ~~~~~~~~~~~~~~~~~~~~~~~~~\n\n Flask-Security decorators module\n\n :copyright: (c) 2012 by Matt Wright.\n :license: MIT, see LICENSE for more details.\n\"\"\"\n\nfrom collections import namedtuple\nfrom functools import wraps\n\nfrom flask import (abort, current_app, Response, request,\n url_for, redirect, _request_ctx_stack)\nfrom flask_login import current_user, login_required # pragma: no flakes\nfrom flask_principal import RoleNeed, Permission, Identity, identity_changed\nfrom werkzeug.local import LocalProxy\nfrom werkzeug.routing import BuildError\n\nfrom . import utils\n\n\n# Convenient references\n_security = LocalProxy(lambda: current_app.extensions['security'])\n\n\n_default_unauthorized_html = \"\"\"\n <h1>Unauthorized</h1>\n <p>The server could not verify that you are authorized to access the URL\n requested. You either supplied the wrong credentials (e.g. a bad password),\n or your browser doesn't understand how to supply the credentials required.</p>\n \"\"\"\n\nBasicAuth = namedtuple('BasicAuth', 'username, password')\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _get_unauthorized_response(text=None, headers=None):\n text = text or _default_unauthorized_html\n headers = headers or {}\n return Response(text, 401, headers)", "metadata": "root._get_unauthorized_response", "header": "['module', '___EOS___']", "index": 38 }, { "content": "def _get_unauthorized_view():\n view = utils.get_url(utils.config_value('UNAUTHORIZED_VIEW'))\n if view:\n if callable(view):\n view = view()\n else:\n try:\n view = url_for(view)\n except BuildError:\n view = None\n utils.do_flash(*utils.get_message('UNAUTHORIZED'))\n return redirect(view or request.referrer or '/')\n abort(403)", "metadata": "root._get_unauthorized_view", "header": "['module', '___EOS___']", "index": 44 }, { "content": "def _check_token():\n header_key = _security.token_authentication_header\n args_key = _security.token_authentication_key\n header_token = request.headers.get(header_key, None)\n token = request.args.get(args_key, header_token)\n if request.get_json(silent=True):\n if not isinstance(request.json, list):\n token = request.json.get(args_key, token)\n\n user = _security.login_manager.token_callback(token)\n\n if user and user.is_authenticated:\n app = current_app._get_current_object()\n _request_ctx_stack.top.user = user\n identity_changed.send(app, identity=Identity(user.id))\n return True\n\n return False", "metadata": "root._check_token", "header": "['module', '___EOS___']", "index": 59 }, { "content": "def _check_http_auth():\n auth = request.authorization or BasicAuth(username=None, password=None)\n user = _security.datastore.find_user(email=auth.username)\n\n if user and utils.verify_and_update_password(auth.password, user):\n _security.datastore.commit()\n app = current_app._get_current_object()\n _request_ctx_stack.top.user = user\n identity_changed.send(app, identity=Identity(user.id))\n return True\n\n return False", "metadata": "root._check_http_auth", "header": "['module', '___EOS___']", "index": 79 }, { "content": "def http_auth_required(realm):\n \"\"\"Decorator that protects endpoints using Basic HTTP authentication.\n The username should be set to the user's email address.\n\n :param realm: optional realm name\"\"\"\n\n def decorator(fn):\n @wraps(fn)\n def wrapper(*args, **kwargs):\n if _check_http_auth():\n return fn(*args, **kwargs)\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n r = _security.default_http_auth_realm if callable(realm) else realm\n h = {'WWW-Authenticate': 'Basic realm=\"%s\"' % r}\n return _get_unauthorized_response(headers=h)\n return wrapper\n\n if callable(realm):\n return decorator(realm)\n return decorator", "metadata": "root.http_auth_required", "header": "['module', '___EOS___']", "index": 93 }, { "content": "def auth_token_required(fn):\n \"\"\"Decorator that protects endpoints using token authentication. The token\n should be added to the request by the client by using a query string\n variable with a name equal to the configuration value of\n `SECURITY_TOKEN_AUTHENTICATION_KEY` or in a request header named that of\n the configuration value of `SECURITY_TOKEN_AUTHENTICATION_HEADER`\n \"\"\"\n\n @wraps(fn)\n def decorated(*args, **kwargs):\n if _check_token():\n return fn(*args, **kwargs)\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_response()\n return decorated", "metadata": "root.auth_token_required", "header": "['module', '___EOS___']", "index": 117 }, { "content": "def auth_required(*auth_methods):\n \"\"\"\n Decorator that protects enpoints through multiple mechanisms\n Example::\n\n @app.route('/dashboard')\n @auth_required('token', 'session')\n def dashboard():\n return 'Dashboard'\n\n :param auth_methods: Specified mechanisms.\n \"\"\"\n login_mechanisms = {\n 'token': lambda: _check_token(),\n 'basic': lambda: _check_http_auth(),\n 'session': lambda: current_user.is_authenticated\n }\n\n def wrapper(fn):\n @wraps(fn)\n def decorated_view(*args, **kwargs):\n h = {}\n mechanisms = [(method, login_mechanisms.get(method)) for method in auth_methods]\n for method, mechanism in mechanisms:\n if mechanism and mechanism():\n return fn(*args, **kwargs)\n elif method == 'basic':\n r = _security.default_http_auth_realm\n h['WWW-Authenticate'] = 'Basic realm=\"%s\"' % r\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_response(headers=h)\n return decorated_view\n return wrapper", "metadata": "root.auth_required", "header": "['module', '___EOS___']", "index": 136 }, { "content": "def roles_required(*roles):\n \"\"\"Decorator which specifies that a user must have all the specified roles.\n Example::\n\n @app.route('/dashboard')\n @roles_required('admin', 'editor')\n def dashboard():\n return 'Dashboard'\n\n The current user must have both the `admin` role and `editor` role in order\n to view the page.\n\n :param args: The required roles.\n \"\"\"\n def wrapper(fn):\n @wraps(fn)\n def decorated_view(*args, **kwargs):\n perms = [Permission(RoleNeed(role)) for role in roles]\n for perm in perms:\n if not perm.can():\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_view()\n return fn(*args, **kwargs)\n return decorated_view\n return wrapper", "metadata": "root.roles_required", "header": "['module', '___EOS___']", "index": 173 }, { "content": "def roles_accepted(*roles):\n \"\"\"Decorator which specifies that a user must have at least one of the\n specified roles. Example::\n\n @app.route('/create_post')\n @roles_accepted('editor', 'author')\n def create_post():\n return 'Create Post'\n\n The current user must have either the `editor` role or `author` role in\n order to view the page.\n\n :param args: The possible roles.\n \"\"\"\n def wrapper(fn):\n @wraps(fn)\n def decorated_view(*args, **kwargs):\n perm = Permission(*[RoleNeed(role) for role in roles])\n if perm.can():\n return fn(*args, **kwargs)\n if _security._unauthorized_callback:\n return _security._unauthorized_callback()\n else:\n return _get_unauthorized_view()\n return decorated_view\n return wrapper", "metadata": "root.roles_accepted", "header": "['module', '___EOS___']", "index": 202 }, { "content": "def anonymous_user_required(f):\n @wraps(f)\n def wrapper(*args, **kwargs):\n if current_user.is_authenticated:\n return redirect(utils.get_url(_security.post_login_view))\n return f(*args, **kwargs)\n return wrapper", "metadata": "root.anonymous_user_required", "header": "['module', '___EOS___']", "index": 230 } ]

[ { "span": "from flask_login import current_user, login_required ", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 52 } ]

[]

1

false

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Module is imported with 'import' and 'import from'

statsmodels/statsmodels/statsmodels/compat/python.py

[ { "content": "\"\"\"\nCompatibility tools for differences between Python 2 and 3\n\"\"\"\nimport functools\nimport itertools\nimport sys\nimport urllib\n\nPY3 = (sys.version_info[0] >= 3)\nPY3_2 = sys.version_info[:2] == (3, 2)\n\nif PY3:\n import builtins\n from io import StringIO, BytesIO\n\n cStringIO = StringIO\n import pickle as cPickle\n pickle = cPickle\n import urllib.request\n import urllib.parse\n from urllib.request import HTTPError, urlretrieve, URLError\n import io\n bytes = bytes\n str = str\n asunicode = lambda x, _ : str(x)\n\n\n\n\n\n\n strchar = 'U'\n\n # have to explicitly put builtins into the namespace\n range = range\n map = map\n zip = zip\n filter = filter\n reduce = functools.reduce\n long = int\n unichr = chr\n zip_longest = itertools.zip_longest\n\n # list-producing versions of the major Python iterating functions\n\n\n\n\n urlopen = urllib.request.urlopen\n urljoin = urllib.parse.urljoin\n urlretrieve = urllib.request.urlretrieve\n urlencode = urllib.parse.urlencode\n string_types = str\n input = input\n\nelse:\n import __builtin__ as builtins\n # not writeable when instantiated with string, doesn't handle unicode well\n from cStringIO import StringIO as cStringIO\n # always writeable\n from StringIO import StringIO\n\n BytesIO = StringIO\n import cPickle\n pickle = cPickle\n import urllib2\n import urlparse\n\n bytes = str\n str = str\n asbytes = str\n asstr = str\n asstr2 = str\n strchar = 'S'\n\n\n\n\n # import iterator versions of these functions\n range = xrange\n zip = itertools.izip\n filter = itertools.ifilter\n map = itertools.imap\n reduce = reduce\n long = long\n unichr = unichr\n zip_longest = itertools.izip_longest\n\n # Python 2-builtin ranges produce lists\n lrange = builtins.range\n lzip = builtins.zip\n lmap = builtins.map\n lfilter = builtins.filter\n\n urlopen = urllib2.urlopen\n urljoin = urlparse.urljoin\n urlencode = urllib.urlencode\n HTTPError = urllib2.HTTPError\n URLError = urllib2.URLError\n string_types = basestring\n\n input = raw_input\n\n\n\n\n\n\n\n\ntry:\n advance_iterator = next\nexcept NameError:\nnext = advance_iterator\n\n\ntry:\n callable = callable\nexcept NameError:\n\n\n\n\n\n\n\n\n\ntry:\n combinations = itertools.combinations\nexcept:\n # Python 2.6 only\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import urllib.request", "start_line": 18, "start_column": 4, "end_line": 18, "end_column": 25 }, { "span": "import io", "start_line": 21, "start_column": 4, "end_line": 21, "end_column": 13 } ]

[]

1

true

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Unused import

django-leonardo/django-leonardo/leonardo/module/leonardo_auth/forms.py

[ { "content": "from __future__ import absolute_import\n\nfrom django.contrib.auth import authenticate, login\nfrom django.contrib.auth.models import User\nfrom django.contrib.auth.tokens import default_token_generator\nfrom django.contrib.sites.models import Site\nfrom django.core import exceptions\nfrom django.core.urlresolvers import reverse\nfrom django.db.models import Q\nfrom django.utils.translation import ugettext_lazy as _\nfrom django.utils.translation import pgettext, ugettext\nfrom horizon import forms, messages\nfrom leonardo.forms import SelfHandlingForm, Layout, InlineCheckboxes\nfrom horizon.utils import validators\n\n\n\n\n\n\n\"\"\"\nclass ChangePasswordForm(UserForm):\n\n oldpassword = PasswordField(label=_(\"Current Password\"))\n password1 = SetPasswordField(label=_(\"New Password\"))\n password2 = PasswordField(label=_(\"New Password (again)\"))\n\n def clean_oldpassword(self):\n if not self.user.check_password(self.cleaned_data.get(\"oldpassword\")):\n raise forms.ValidationError(_(\"Please type your current\"\n \" password.\"))\n return self.cleaned_data[\"oldpassword\"]\n\n def clean_password2(self):\n if (\"password1\" in self.cleaned_data\n and \"password2\" in self.cleaned_data):\n if (self.cleaned_data[\"password1\"]\n != self.cleaned_data[\"password2\"]):\n raise forms.ValidationError(_(\"You must type the same password\"\n \" each time.\"))\n return self.cleaned_data[\"password2\"]\n\n def save(self):\n get_adapter().set_password(self.user, self.cleaned_data[\"password1\"])\n\n\nclass SetPasswordForm(UserForm):\n\n password1 = SetPasswordField(label=_(\"Password\"))\n password2 = PasswordField(label=_(\"Password (again)\"))\n\n def clean_password2(self):\n if (\"password1\" in self.cleaned_data\n and \"password2\" in self.cleaned_data):\n if (self.cleaned_data[\"password1\"]\n != self.cleaned_data[\"password2\"]):\n raise forms.ValidationError(_(\"You must type the same password\"\n \" each time.\"))\n return self.cleaned_data[\"password2\"]\n\n def save(self):\n get_adapter().set_password(self.user, self.cleaned_data[\"password1\"])\n\n\nclass ResetPasswordForm(forms.Form):\n\n email = forms.EmailField(\n label=_(\"E-mail\"),\n required=True,\n widget=forms.TextInput(attrs={\"type\": \"email\", \"size\": \"30\"}))\n\n def clean_email(self):\n email = self.cleaned_data[\"email\"]\n email = get_adapter().clean_email(email)\n self.users = get_user_model().objects \\\n .filter(Q(email__iexact=email)\n | Q(emailaddress__email__iexact=email)).distinct()\n if not self.users.exists():\n raise forms.ValidationError(_(\"The e-mail address is not assigned\"\n \" to any user account\"))\n return self.cleaned_data[\"email\"]\n\n def save(self, request, **kwargs):\n\n email = self.cleaned_data[\"email\"]\n token_generator = kwargs.get(\"token_generator\",\n default_token_generator)\n\n for user in self.users:\n\n temp_key = token_generator.make_token(user)\n\n # save it to the password reset model\n # password_reset = PasswordReset(user=user, temp_key=temp_key)\n # password_reset.save()\n\n current_site = Site.objects.get_current()\n\n # send the password reset email\n path = reverse(\"account_reset_password_from_key\",\n kwargs=dict(uidb36=user_pk_to_url_str(user),\n key=temp_key))\n url = build_absolute_uri(request, path,\n protocol=app_settings.DEFAULT_HTTP_PROTOCOL)\n context = {\"site\": current_site,\n \"user\": user,\n \"password_reset_url\": url}\n if app_settings.AUTHENTICATION_METHOD \\\n != AuthenticationMethod.EMAIL:\n context['username'] = user_username(user)\n get_adapter().send_mail('account/email/password_reset_key',\n email,\n context)\n return self.cleaned_data[\"email\"]\n\n\nclass ResetPasswordKeyForm(forms.Form):\n\n password1 = SetPasswordField(label=_(\"New Password\"))\n password2 = PasswordField(label=_(\"New Password (again)\"))\n\n def __init__(self, *args, **kwargs):\n self.user = kwargs.pop(\"user\", None)\n self.temp_key = kwargs.pop(\"temp_key\", None)\n super(ResetPasswordKeyForm, self).__init__(*args, **kwargs)\n\n # FIXME: Inspecting other fields -> should be put in def clean(self) ?\n def clean_password2(self):\n if (\"password1\" in self.cleaned_data\n and \"password2\" in self.cleaned_data):\n if (self.cleaned_data[\"password1\"]\n != self.cleaned_data[\"password2\"]):\n raise forms.ValidationError(_(\"You must type the same\"\n \" password each time.\"))\n return self.cleaned_data[\"password2\"]\n\n def save(self):\n get_adapter().set_password(self.user, self.cleaned_data[\"password1\"])\n\"\"\"\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class LoginForm(SelfHandlingForm):\n\n username = forms.CharField(label=_(\"Username\"),\n max_length=255,\n widget=forms.TextInput(\n attrs={'placeholder':\n _('Username'),\n 'autofocus': 'autofocus'}))\n\n password = forms.CharField(label=_(\"Password\"),\n widget=forms.PasswordInput(render_value=False))\n remember = forms.BooleanField(label=_(\"Remember Me\"),\n required=False)\n\n", "metadata": "root.LoginForm", "header": "['module', '___EOS___']", "index": 16 }, { "content": " def __init__(self, *args, **kwargs):\n super(LoginForm, self).__init__(*args, **kwargs)\n self.helper.layout = Layout(\n 'username', 'password', 'remember',\n )", "metadata": "root.LoginForm.__init__", "header": "['class', 'LoginForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 30 }, { "content": " def handle(self, request, data):\n\n user = authenticate(**data)\n if user is not None:\n if user.is_active:\n login(request, user)\n\n messages.success(request, \"Login success.\")\n return True\n messages.error(request, \"Login failed.\")\n return False", "metadata": "root.LoginForm.handle", "header": "['class', 'LoginForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 36 }, { "content": "class SignupForm(SelfHandlingForm):\n\n username = forms.CharField(label=_(\"Username\"),\n max_length=255,\n widget=forms.TextInput(\n attrs={'placeholder':\n _('Username'),\n 'autofocus': 'autofocus'}))\n email = forms.EmailField(widget=forms.TextInput(\n attrs={'type': 'email',\n 'placeholder': _('E-mail address')}))\n\n password = forms.RegexField(\n label=_(\"Password\"),\n widget=forms.PasswordInput(render_value=False),\n regex=validators.password_validator(),\n error_messages={'invalid': validators.password_validator_msg()})\n confirm_password = forms.CharField(\n label=_(\"Confirm Password\"),\n widget=forms.PasswordInput(render_value=False))\n no_autocomplete = True\n\n", "metadata": "root.SignupForm", "header": "['module', '___EOS___']", "index": 49 }, { "content": " def clean(self):\n '''Check to make sure password fields match.'''\n data = super(forms.Form, self).clean()\n\n # basic check for now\n if 'username' in data:\n if User.objects.filter(\n username=data['username'],\n email=data['email']).exists():\n raise validators.ValidationError(\n _('Username or email exists in database.'))\n\n if 'password' in data:\n if data['password'] != data.get('confirm_password', None):\n raise validators.ValidationError(_('Passwords do not match.'))\n else:\n data.pop('confirm_password')\n return data", "metadata": "root.SignupForm.clean", "header": "['class', 'SignupForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 71 }, { "content": " def handle(self, request, data):\n\n try:\n user = User.objects.create_user(**data)\n messages.success(\n request,\n _(\"User account {} was successfuly created.\".format(user)))\n\n except Exception as e:\n raise e\n else:\n data.pop('email')\n return LoginForm().handle(request, data)\n\n messages.error(request, _(\"Create Account failed.\"))\n return False", "metadata": "root.SignupForm.handle", "header": "['class', 'SignupForm', '(', 'SelfHandlingForm', ')', ':', '___EOS___']", "index": 90 } ]

[ { "span": "from django.contrib.auth.tokens import default_token_generator", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 62 }, { "span": "from django.contrib.sites.models import Site", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 44 }, { "span": "from django.core import exceptions", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 34 }, { "span": "from django.core.urlresolvers import reverse", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 44 }, { "span": "from django.db.models import Q", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 30 }, { "span": "from django.utils.translation import pgettext, ugettext", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 55 }, { "span": "from leonardo.forms import SelfHandlingForm, Layout, InlineCheckboxes", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 69 } ]

[]

1

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Variable defined multiple times

rizar/attention-lvcsr/libs/Theano/theano/tensor/nnet/tests/test_neighbours.py

[ { "content": " def test_infer_shape(self):\n shape = (100, 40, 6, 3)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 1),\n mode='valid')],\n [images],\n Images2Neibs\n )\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 3),\n mode='valid')],\n [images],\n Images2Neibs\n )\n shape = (100, 40, 5, 4)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 1),\n mode='ignore_borders')],\n [images],\n Images2Neibs\n )\n shape = (100, 40, 5, 3)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 3),\n mode='ignore_borders')],\n [images],\n Images2Neibs\n )\n\n shape = (100, 40, 6, 7)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(2, 2),\n mode='ignore_borders')],\n [images],\n Images2Neibs\n )\n shape = (100, 40, 5, 10)\n images = numpy.ones(shape).astype('float32')\n x = T.ftensor4()\n f = self._compile_and_check([x],\n [images2neibs(\n x, neib_shape=(3, 3),\n mode='wrap_centered')],\n [images],\n Images2Neibs\n )", "metadata": "root.T_Images2Neibs.test_infer_shape", "header": "['class', 'T_Images2Neibs', '(', 'unittest_tools', '.', 'InferShapeTester', ')', ':', '___EOS___']", "index": 372 } ]

[ { "span": "f ", "start_line": 376, "start_column": 8, "end_line": 376, "end_column": 9 }, { "span": "f ", "start_line": 383, "start_column": 8, "end_line": 383, "end_column": 9 }, { "span": "f ", "start_line": 393, "start_column": 8, "end_line": 393, "end_column": 9 }, { "span": "f ", "start_line": 403, "start_column": 8, "end_line": 403, "end_column": 9 }, { "span": "f ", "start_line": 414, "start_column": 8, "end_line": 414, "end_column": 9 } ]

[]

1

true

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Redundant comparison

mattharrison/rst2odp/odplib/imagescale.py

[ { "content": "def adjust_crop(dst_w, dst_h, img_w, img_h):\n \"\"\"\n given a x and y of dest, determine the ratio and return\n an (x,y,w,h) for a cropped image (note x or y could be neg).\n >>> adjust_crop(4,3,5,5)\n (0, -0.5, 4.0, 4.0)\n >>> adjust_crop(8,6,5,5)\n (0, -1.0, 8.0, 8.0)\n >>> adjust_crop(4,3,5,2)\n (-1.75, 0, 7.5, 3.0)\n >>> adjust_crop(8,6,5,2)\n (-3.5, 0, 15.0, 6.0)\n \"\"\"\n dst_w = float(dst_w)\n dst_h = float(dst_h)\n img_w = float(img_w)\n img_h = float(img_h)\n\n dst_ratio = float(dst_w)/dst_h\n\n img_ratio = float(img_w)/img_h\n\n if dst_ratio > img_ratio:\n scale = dst_w/img_w\n x = 0\n w = dst_w\n h = img_h * scale\n y = dst_h/2 - h/2\n\n elif dst_ratio <= img_ratio:\n scale = dst_h/img_h\n y = 0\n w = img_w * scale\n h = img_h * scale\n x = dst_w/2 - w/2\n\n return x,y,w,h", "metadata": "root.adjust_crop", "header": "['module', '___EOS___']", "index": 22 } ]

[ { "span": "dst_ratio <= img_ratio:", "start_line": 51, "start_column": 9, "end_line": 51, "end_column": 31 } ]

[ { "span": "dst_ratio > img_ratio:", "start_line": 44, "start_column": 7, "end_line": 44, "end_column": 28 } ]

1

true

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Unused import

jfsantos/ift6266h14/old/exp_next_sample.py

[ { "content": "from pylearn2_timit.timitnext import TIMITnext\nimport itertools\nimport numpy as np\nfrom pylearn2.datasets import DenseDesignMatrix\nfrom pylearn2.models.mlp import *\nfrom pylearn2.costs.mlp.dropout import Dropout\nfrom pylearn2.termination_criteria import EpochCounter\nfrom pylearn2.training_algorithms.sgd import SGD\nfrom pylearn2.training_algorithms import learning_rule\nfrom pylearn2.train import Train\nfrom pylearn2.train_extensions import best_params\nfrom pylearn2.costs.cost import SumOfCosts\nfrom pylearn2.costs.mlp import *\nimport cPickle as pickle\nimport theano\nfrom sys import argv\n\nframe_len = 160\noverlap = frame_len-1\n\n#timit_root = argv[1]\n\ntrain = TIMITnext(\"train\", frame_len, overlap, start=0, stop=100)\nvalid = TIMITnext(\"valid\", frame_len, overlap, start=0, stop=10)\ntest = TIMITnext(\"test\", frame_len, overlap, start=0, stop=50)\n\n# Model used to predict the next sample. This model is never trained,\n# as it uses parameters predicted by the next model.\n\ni0 = VectorSpace(frame_len)\ns0 = Sigmoid(layer_name='h0', dim=500, sparse_init=150)\ns1 = Sigmoid(layer_name='h1', dim=250, sparse_init=75)\ns2 = Sigmoid(layer_name='h2', dim=100, sparse_init=15)\nl0 = Linear(layer_name='y', dim=1, sparse_init=1)\n\nmdl = MLP(layers=[s0, s1, s2, l0], nvis=frame_len, input_space=i0)\n\ntrainer = SGD(batch_size=128, learning_rate = .01, init_momentum = .5, monitoring_dataset = {'train' : train, 'valid': valid, 'test' : test}, termination_criterion = EpochCounter(max_epochs=20), cost = SumOfCosts([Default(), L1WeightDecay([0.01,0.01,0.01,0.01])]))\n \nwatcher = best_params.MonitorBasedSaveBest(\n channel_name='test_objective',\n save_path='nextsample.pkl')\n \nexperiment = Train(dataset=train,\n model=mdl,\n algorithm=trainer, extensions=[watcher])\n\nexperiment.main_loop()\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import itertools", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 16 }, { "span": "import numpy as np", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 18 }, { "span": "from pylearn2.datasets import DenseDesignMatrix", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 47 }, { "span": "from pylearn2.costs.mlp.dropout import Dropout", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 46 }, { "span": "from pylearn2.training_algorithms import learning_rule", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 54 }, { "span": "import cPickle as pickle", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 24 }, { "span": "import theano", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 13 }, { "span": "from sys import argv", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 20 } ]

[]

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Unused local variable

rvanlaar/easy-transifex/src/transifex/transifex/resources/formats/xliff.py

[ { "content": " def _parse(self, is_source, lang_rules):\n \"\"\"\n Parses XLIFF file and exports all entries as GenericTranslations.\n \"\"\"\n resource = self.resource\n\n context = \"\"\n content = self.content.encode('utf-8')\n try:\n self.doc = xml.dom.minidom.parseString(content)\n root = self.doc.documentElement\n\n if root.tagName != \"xliff\":\n raise XliffParseError(_(\"Root element is not 'xliff'\"))\n for node in root.childNodes:\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"file\":\n self.parse_tag_file(node, is_source)\n except Exception, e:\n XliffParseError(e.message)\n\n return self.doc.toxml()", "metadata": "root.XliffHandler._parse", "header": "['class', 'XliffHandler', '(', 'Handler', ')', ':', '___EOS___']", "index": 169 }, { "content": " def parse_tag_group(self, group_node, is_source=False, context=None):\n if not context:\n context = []\n if group_node.attributes['restype'].value == \"x-gettext-plurals\":\n pluralized = True\n nplural_file = 0\n nplural = self.language.get_pluralrules_numbers()\n trans_unit_nodes = []\n for node in group_node.childNodes:\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"trans-unit\":\n nplural_file += 1\n trans_unit_nodes.append(node)\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"context-group\":\n context.extend(self.parse_tag_context_group(node, is_source))\n source = \"\"\n source_node = trans_unit_nodes[nplural.index(1)].getElementsByTagName(\"source\")[0]\n if len(source_node.childNodes)>1:\n source = self._getText(source_node.childNodes)\n else:\n source = source_node.firstChild.data\n if is_source:\n if nplural_file != 2:\n raise self.HandlerParseError(_(\"Your source file has more than two plurals which is not supported.\"))\n for n, node in enumerate(trans_unit_nodes):\n if n == 0:\n rule = 1\n else:\n rule = 5\n self.parse_tag_trans_unit(node, is_source, [i for i in context], source_string = source, rule=rule)\n else:\n if nplural_file != len(nplural):\n raise self.HandlerParseError(_(\"Your translation file does not have the supported number of plurals.\"))\n\n for n, node in enumerate(trans_unit_nodes):\n self.parse_tag_trans_unit(node, is_source, [i for i in context], source_string = source, rule=nplural[n])\n return\n\n for node in group_node.childNodes:\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"group\":\n self.parse_tag_group(node, is_source, [i for i in context])\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"trans-unit\":\n self.parse_tag_trans_unit(node, is_source, [i for i in context])\n if node.nodeType == node.ELEMENT_NODE and node.localName == \"context-group\":\n # context-group has to be in XML before occurence of trans-unit, so it\n # is ok to populate context this way\n context.extend(self.parse_tag_context_group(node, is_source))\n # TODO prop-group, note, count-group\n # there is no way to handle bin-unit in transifex", "metadata": "root.XliffHandler.parse_tag_group", "header": "['class', 'XliffHandler', '(', 'Handler', ')', ':', '___EOS___']", "index": 204 } ]

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Constant in conditional expression or statement

kayhayen/Nuitka/tests/optimizations/Conditions.py

[ { "content": "# Copyright 2016, Kay Hayen, mailto:[email protected]\n#\n# Python test originally created or extracted from other peoples work. The\n# parts from me are licensed as below. It is at least Free Software where\n# it's copied from other people. In these cases, that will normally be\n# indicated.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n#\n\nprint(1 if [1,2] else 2)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "[1,2] ", "start_line": 20, "start_column": 11, "end_line": 20, "end_column": 16 } ]

[]

1

true

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Unused local variable

StevenBlack/hosts/updateHostsFile.py

[ { "content": "def getUpdateURLsFromFile(source):\n pathToUpdateFile = os.path.join(settings[\"datapath\"], source, settings[\"updateurlfilename\"])\n if os.path.exists(pathToUpdateFile):\n updateFile = open(pathToUpdateFile, \"r\")\n retURLs = updateFile.readlines()\n # .strip()\n updateFile.close()\n else:\n retURL = None\n printFailure(\"Warning: Can't find the update file for source \" + source + \"\\n\" +\n \"Make sure that there's a file at \" + pathToUpdateFile)\n return retURLs", "metadata": "root.getUpdateURLsFromFile", "header": "['module', '___EOS___']", "index": 242 }, { "content": "def updateReadmeData():\n extensionsKey = \"base\"\n hostsLocation = \"\"\n if settings[\"extensions\"]:\n extensionsKey = \"-\".join(settings[\"extensions\"])\n\n generationData = {\"location\": os.path.join(settings[\"outputsubfolder\"], \"\"),\n \"entries\": settings[\"numberofrules\"]}\n settings[\"readmedata\"][extensionsKey] = generationData\n with open(settings[\"readmedatafilename\"], \"w\") as f:\n json.dump(settings[\"readmedata\"], f)", "metadata": "root.updateReadmeData", "header": "['module', '___EOS___']", "index": 402 }, { "content": "def moveHostsFileIntoPlace(finalFile):\n if os.name == \"posix\":\n dnsCacheFound = False\n print (\"Moving the file requires administrative privileges. \" +\n \"You might need to enter your password.\")\n if subprocess.call([\"/usr/bin/sudo\", \"cp\", os.path.abspath(finalFile.name), \"/etc/hosts\"]):\n printFailure(\"Moving the file failed.\")\n print (\"Flushing the DNS Cache to utilize new hosts file...\")\n if platform.system() == \"Darwin\":\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"killall\", \"-HUP\", \"mDNSResponder\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n if os.path.isfile(\"/etc/rc.d/init.d/nscd\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/etc/rc.d/init.d/nscd\", \"restart\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting nscd succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/NetworkManager.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"NetworkManager.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting NetworkManager succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/wicd.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"wicd.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting wicd succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/dnsmasq.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"dnsmasq.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting dnsmasq succeeded\")\n if os.path.isfile(\"/usr/lib/systemd/system/networking.service\"):\n dnsCacheFound = True\n if subprocess.call([\"/usr/bin/sudo\", \"/usr/bin/systemctl\", \"restart\", \"networking.service\"]):\n printFailure(\"Flushing the DNS Cache failed.\")\n else:\n printSuccess(\"Flushing DNS by restarting networking.service succeeded\")\n if not dnsCacheFound:\n printFailure(\"Unable to determine DNS management tool.\")\n elif os.name == \"nt\":\n print (\"Automatically moving the hosts file in place is not yet supported.\")\n print (\"Please move the generated file to %SystemRoot%\\system32\\drivers\\etc\\hosts\")", "metadata": "root.moveHostsFileIntoPlace", "header": "['module', '___EOS___']", "index": 414 } ]

[ { "span": "retURL ", "start_line": 250, "start_column": 8, "end_line": 250, "end_column": 14 }, { "span": "hostsLocation ", "start_line": 404, "start_column": 4, "end_line": 404, "end_column": 17 }, { "span": "dnsCacheFound ", "start_line": 423, "start_column": 12, "end_line": 423, "end_column": 25 } ]

[]

1

true

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"\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", "_", "print", "Success_", "(_", "\"", "Flu", "shing", " ", "DNS", " ", "by", " ", "restart", "ing", " ", "dnsm", "asq", " ", "succe", "eded", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "os_", "._", "path_", "._", "isfile_", "(_", "\"/", "usr", "/", "lib", "/", "system", "d", "/", "system", "/", "networking", ".", "service", "\"_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "dns", "Cache", "Found_", "=_", "True_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "if_", "subprocess_", "._", "call_", "(_", "[_", "\"/", "usr", "/", "bin", "/", "sudo", "\"_", ",_", "\"/", "usr", "/", "bin", "/", "system", "ctl", "\"_", ",_", "\"", "restart", "\"_", ",_", "\"", "networking", ".", "service", "\"_", "]_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", "_", "print", "Failure_", "(_", "\"", "Flu", "shing", " ", "the", " ", "DNS", " ", "Cache", " ", "fail", "ed", ".\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", "_", "print", "Success_", "(_", "\"", "Flu", "shing", " ", "DNS", " ", "by", " ", "restart", "ing", " ", "networking", ".", "service", " ", "succe", "eded", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "not_", "dns", "Cache", "Found_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "print", "Failure_", "(_", "\"", "Una", "ble", " ", "to", " ", "dete", "rmin", "e", " ", "DNS", " ", "manage", "ment", " ", "tool", ".\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "elif_", "os_", "._", "name_", "==_", "\"", "nt", "\"_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "print_", "(_", "\"", "Automat", "ical", "ly", " ", "movin", "g", " ", "the", " ", "host", "s", " ", "file", " ", "in", " ", "place", " ", "is", " ", "not", " ", "ye", "t", " ", "support", "ed", ".\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "print_", "(_", "\"", "Ple", "ase", " ", "move", " ", "the", " ", "generat", "ed", " ", "file", " ", "to", " ", "%", "System", "Roo", "t", "%\\", "\\", "system", "32", "\\\\", "driver", "s", "\\\\", "etc", "\\\\", "host", "s", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]

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Unnecessary pass

django-extensions/django-extensions/django_extensions/management/commands/runserver_plus.py

[ { "content": " @signalcommand\n def handle(self, addrport='', *args, **options):\n import django\n\n startup_messages = options.get('startup_messages', 'reload')\n if startup_messages == \"reload\":\n self.show_startup_messages = os.environ.get('RUNSERVER_PLUS_SHOW_MESSAGES')\n elif startup_messages == \"once\":\n self.show_startup_messages = not os.environ.get('RUNSERVER_PLUS_SHOW_MESSAGES')\n elif startup_messages == \"never\":\n self.show_startup_messages = False\n else:\n self.show_startup_messages = True\n\n os.environ['RUNSERVER_PLUS_SHOW_MESSAGES'] = '1'\n\n # Do not use default ending='\\n', because StreamHandler() takes care of it\n if hasattr(self.stderr, 'ending'):\n self.stderr.ending = None\n\n setup_logger(logger, self.stderr, filename=options.get('output_file', None)) # , fmt=\"[%(name)s] %(message)s\")\n logredirect = RedirectHandler(__name__)\n\n # Redirect werkzeug log items\n werklogger = logging.getLogger('werkzeug')\n werklogger.setLevel(logging.INFO)\n werklogger.addHandler(logredirect)\n werklogger.propagate = False\n\n if options.get(\"print_sql\", False):\n try:\n # Django 1.7 onwards\n from django.db.backends import utils\n except ImportError:\n # Django 1.6 below\n from django.db.backends import util as utils\n\n try:\n import sqlparse\n except ImportError:\n sqlparse = None # noqa\n\n class PrintQueryWrapper(utils.CursorDebugWrapper):\n def execute(self, sql, params=()):\n starttime = time.time()\n try:\n return self.cursor.execute(sql, params)\n finally:\n raw_sql = self.db.ops.last_executed_query(self.cursor, sql, params)\n execution_time = time.time() - starttime\n therest = ' -- [Execution time: %.6fs] [Database: %s]' % (execution_time, self.db.alias)\n if sqlparse:\n logger.info(sqlparse.format(raw_sql, reindent=True) + therest)\n else:\n logger.info(raw_sql + therest)\n\n utils.CursorDebugWrapper = PrintQueryWrapper\n\n try:\n from django.core.servers.basehttp import AdminMediaHandler\n USE_ADMINMEDIAHANDLER = True\n except ImportError:\n USE_ADMINMEDIAHANDLER = False\n\n try:\n from django.core.servers.basehttp import get_internal_wsgi_application as WSGIHandler\n except ImportError:\n from django.core.handlers.wsgi import WSGIHandler # noqa\n\n try:\n from werkzeug import run_simple, DebuggedApplication\n\n # Set colored output\n if settings.DEBUG:\n try:\n set_werkzeug_log_color()\n except: # We are dealing with some internals, anything could go wrong\n if self.show_startup_messages:\n print(\"Wrapping internal werkzeug logger for color highlighting has failed!\")\n pass\n\n except ImportError:\n raise CommandError(\"Werkzeug is required to use runserver_plus. Please visit http://werkzeug.pocoo.org/ or install via pip. (pip install Werkzeug)\")\n\n pdb_option = options.get('pdb', False)\n ipdb_option = options.get('ipdb', False)\n pm = options.get('pm', False)\n try:\n from django_pdb.middleware import PdbMiddleware\n except ImportError:\n if pdb_option or ipdb_option or pm:\n raise CommandError(\"django-pdb is required for --pdb, --ipdb and --pm options. Please visit https://pypi.python.org/pypi/django-pdb or install via pip. (pip install django-pdb)\")\n pm = False\n else:\n # Add pdb middleware if --pdb is specified or if in DEBUG mode\n middleware = 'django_pdb.middleware.PdbMiddleware'\n if (pdb_option or ipdb_option or settings.DEBUG) and middleware not in settings.MIDDLEWARE_CLASSES:\n settings.MIDDLEWARE_CLASSES += (middleware,)\n\n # If --pdb is specified then always break at the start of views.\n # Otherwise break only if a 'pdb' query parameter is set in the url\n if pdb_option:\n PdbMiddleware.always_break = 'pdb'\n elif ipdb_option:\n PdbMiddleware.always_break = 'ipdb'\n\n def postmortem(request, exc_type, exc_value, tb):\n if has_ipdb():\n import ipdb\n p = ipdb\n else:\n import pdb\n p = pdb\n print >>sys.stderr, \"Exception occured: %s, %s\" % (exc_type,\n exc_value)\n p.post_mortem(tb)\n\n # usurp django's handler\n from django.views import debug\n debug.technical_500_response = postmortem if pm else null_technical_500_response\n\n self.use_ipv6 = options.get('use_ipv6')\n if self.use_ipv6 and not socket.has_ipv6:\n raise CommandError('Your Python does not support IPv6.')\n self._raw_ipv6 = False\n if not addrport:\n try:\n addrport = settings.RUNSERVERPLUS_SERVER_ADDRESS_PORT\n except AttributeError:\n pass\n if not addrport:\n self.addr = ''\n self.port = DEFAULT_PORT\n else:\n m = re.match(naiveip_re, addrport)\n if m is None:\n raise CommandError('\"%s\" is not a valid port number '\n 'or address:port pair.' % addrport)\n self.addr, _ipv4, _ipv6, _fqdn, self.port = m.groups()\n if not self.port.isdigit():\n raise CommandError(\"%r is not a valid port number.\" %\n self.port)\n if self.addr:\n if _ipv6:\n self.addr = self.addr[1:-1]\n self.use_ipv6 = True\n self._raw_ipv6 = True\n elif self.use_ipv6 and not _fqdn:\n raise CommandError('\"%s\" is not a valid IPv6 address.'\n % self.addr)\n if not self.addr:\n self.addr = '::1' if self.use_ipv6 else '127.0.0.1'\n\n threaded = options.get('threaded', True)\n use_reloader = options.get('use_reloader', True)\n open_browser = options.get('open_browser', False)\n cert_path = options.get(\"cert_path\")\n quit_command = (sys.platform == 'win32') and 'CTRL-BREAK' or 'CONTROL-C'\n bind_url = \"http://%s:%s/\" % (\n self.addr if not self._raw_ipv6 else '[%s]' % self.addr, self.port)\n extra_files = options.get('extra_files', None) or []\n reloader_interval = options.get('reloader_interval', 1)\n\n def inner_run():\n if self.show_startup_messages:\n print(\"Performing system checks...\\n\")\n if hasattr(self, 'check'):\n self.check(display_num_errors=self.show_startup_messages)\n else:\n self.validate(display_num_errors=self.show_startup_messages)\n if HAS_MIGRATIONS:\n try:\n self.check_migrations()\n except ImproperlyConfigured:\n pass\n if self.show_startup_messages:\n print(\"\\nDjango version %s, using settings %r\" % (django.get_version(), settings.SETTINGS_MODULE))\n print(\"Development server is running at %s\" % (bind_url,))\n print(\"Using the Werkzeug debugger (http://werkzeug.pocoo.org/)\")\n print(\"Quit the server with %s.\" % quit_command)\n path = options.get('admin_media_path', '')\n if not path:\n admin_media_path = os.path.join(django.__path__[0], 'contrib/admin/static/admin')\n if os.path.isdir(admin_media_path):\n path = admin_media_path\n else:\n path = os.path.join(django.__path__[0], 'contrib/admin/media')\n handler = WSGIHandler()\n if USE_ADMINMEDIAHANDLER:\n handler = AdminMediaHandler(handler, path)\n if USE_STATICFILES:\n use_static_handler = options.get('use_static_handler', True)\n insecure_serving = options.get('insecure_serving', False)\n if use_static_handler and (settings.DEBUG or insecure_serving):\n handler = StaticFilesHandler(handler)\n if open_browser:\n import webbrowser\n webbrowser.open(bind_url)\n if cert_path:\n \"\"\"\n OpenSSL is needed for SSL support.\n\n This will make flakes8 throw warning since OpenSSL is not used\n directly, alas, this is the only way to show meaningful error\n messages. See:\n http://lucumr.pocoo.org/2011/9/21/python-import-blackbox/\n for more information on python imports.\n \"\"\"\n try:\n import OpenSSL # NOQA\n except ImportError:\n raise CommandError(\"Python OpenSSL Library is \"\n \"required to use runserver_plus with ssl support. \"\n \"Install via pip (pip install pyOpenSSL).\")\n\n dir_path, cert_file = os.path.split(cert_path)\n if not dir_path:\n dir_path = os.getcwd()\n root, ext = os.path.splitext(cert_file)\n certfile = os.path.join(dir_path, root + \".crt\")\n keyfile = os.path.join(dir_path, root + \".key\")\n try:\n from werkzeug.serving import make_ssl_devcert\n if os.path.exists(certfile) and \\\n os.path.exists(keyfile):\n ssl_context = (certfile, keyfile)\n else: # Create cert, key files ourselves.\n ssl_context = make_ssl_devcert(\n os.path.join(dir_path, root), host='localhost')\n except ImportError:\n if self.show_startup_messages:\n print(\"Werkzeug version is less than 0.9, trying adhoc certificate.\")\n ssl_context = \"adhoc\"\n\n else:\n ssl_context = None\n\n if use_reloader and settings.USE_I18N:\n try:\n from django.utils.autoreload import gen_filenames\n except ImportError:\n pass\n else:\n extra_files.extend(filter(lambda filename: filename.endswith('.mo'), gen_filenames()))\n\n run_simple(\n self.addr,\n int(self.port),\n DebuggedApplication(handler, True),\n use_reloader=use_reloader,\n use_debugger=True,\n extra_files=extra_files,\n reloader_interval=reloader_interval,\n threaded=threaded,\n ssl_context=ssl_context,\n )\n inner_run()", "metadata": "root.Command.handle", "header": "['class', 'Command', '(', 'BaseCommand', ')', ':', '___EOS___']", "index": 95 } ]

[ { "span": "pass", "start_line": 174, "start_column": 20, "end_line": 174, "end_column": 24 } ]

[]

1

true

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Module is imported more than once

amrdraz/kodr/app/brython/www/src/Lib/uuid.py

[ { "content": "r\"\"\"UUID objects (universally unique identifiers) according to RFC 4122.\n\nThis module provides immutable UUID objects (class UUID) and the functions\nuuid1(), uuid3(), uuid4(), uuid5() for generating version 1, 3, 4, and 5\nUUIDs as specified in RFC 4122.\n\nIf all you want is a unique ID, you should probably call uuid1() or uuid4().\nNote that uuid1() may compromise privacy since it creates a UUID containing\nthe computer's network address. uuid4() creates a random UUID.\n\nTypical usage:\n\n >>> import uuid\n\n # make a UUID based on the host ID and current time\n >>> uuid.uuid1() # doctest: +SKIP\n UUID('a8098c1a-f86e-11da-bd1a-00112444be1e')\n\n # make a UUID using an MD5 hash of a namespace UUID and a name\n >>> uuid.uuid3(uuid.NAMESPACE_DNS, 'python.org')\n UUID('6fa459ea-ee8a-3ca4-894e-db77e160355e')\n\n # make a random UUID\n >>> uuid.uuid4() # doctest: +SKIP\n UUID('16fd2706-8baf-433b-82eb-8c7fada847da')\n\n # make a UUID using a SHA-1 hash of a namespace UUID and a name\n >>> uuid.uuid5(uuid.NAMESPACE_DNS, 'python.org')\n UUID('886313e1-3b8a-5372-9b90-0c9aee199e5d')\n\n # make a UUID from a string of hex digits (braces and hyphens ignored)\n >>> x = uuid.UUID('{00010203-0405-0607-0809-0a0b0c0d0e0f}')\n\n # convert a UUID to a string of hex digits in standard form\n >>> str(x)\n '00010203-0405-0607-0809-0a0b0c0d0e0f'\n\n # get the raw 16 bytes of the UUID\n >>> x.bytes\n b'\\x00\\x01\\x02\\x03\\x04\\x05\\x06\\x07\\x08\\t\\n\\x0b\\x0c\\r\\x0e\\x0f'\n\n # make a UUID from a 16-byte string\n >>> uuid.UUID(bytes=x.bytes)\n UUID('00010203-0405-0607-0809-0a0b0c0d0e0f')\n\"\"\"\n\n__author__ = 'Ka-Ping Yee <[email protected]>'\n\nRESERVED_NCS, RFC_4122, RESERVED_MICROSOFT, RESERVED_FUTURE = [\n 'reserved for NCS compatibility', 'specified in RFC 4122',\n 'reserved for Microsoft compatibility', 'reserved for future definition']\n\nint_ = int # The built-in int type\nbytes_ = bytes # The built-in bytes type\n\n\n\n\n\n\n# Thanks to Thomas Heller for ctypes and for his help with its use here.\n\n# If ctypes is available, use it to find system routines for UUID generation.\n# XXX This makes the module non-thread-safe!\n_uuid_generate_random = _uuid_generate_time = _UuidCreate = None\ntry:\n import ctypes, ctypes.util\n\n # The uuid_generate_* routines are provided by libuuid on at least\n # Linux and FreeBSD, and provided by libc on Mac OS X.\n for libname in ['uuid', 'c']:\n try:\n lib = ctypes.CDLL(ctypes.util.find_library(libname))\n except:\n continue\n if hasattr(lib, 'uuid_generate_random'):\n _uuid_generate_random = lib.uuid_generate_random\n if hasattr(lib, 'uuid_generate_time'):\n _uuid_generate_time = lib.uuid_generate_time\n if _uuid_generate_random is not None:\n break # found everything we were looking for\n\n # The uuid_generate_* functions are broken on MacOS X 10.5, as noted\n # in issue #8621 the function generates the same sequence of values\n # in the parent process and all children created using fork (unless\n # those children use exec as well).\n #\n # Assume that the uuid_generate functions are broken from 10.5 onward,\n # the test can be adjusted when a later version is fixed.\n import sys\n if sys.platform == 'darwin':\n import os\n if int(os.uname().release.split('.')[0]) >= 9:\n _uuid_generate_random = _uuid_generate_time = None\n\n # On Windows prior to 2000, UuidCreate gives a UUID containing the\n # hardware address. On Windows 2000 and later, UuidCreate makes a\n # random UUID and UuidCreateSequential gives a UUID containing the\n # hardware address. These routines are provided by the RPC runtime.\n # NOTE: at least on Tim's WinXP Pro SP2 desktop box, while the last\n # 6 bytes returned by UuidCreateSequential are fixed, they don't appear\n # to bear any relationship to the MAC address of any network device\n # on the box.\n try:\n lib = ctypes.windll.rpcrt4\n except:\n lib = None\n _UuidCreate = getattr(lib, 'UuidCreateSequential',\n getattr(lib, 'UuidCreate', None))\nexcept:\n pass\n\n\n\n\n_node = None\n\n\n_last_timestamp = None\n\n\n\n\n\n# The following standard UUIDs are for use with uuid3() or uuid5().\n\nNAMESPACE_DNS = UUID('6ba7b810-9dad-11d1-80b4-00c04fd430c8')\nNAMESPACE_URL = UUID('6ba7b811-9dad-11d1-80b4-00c04fd430c8')\nNAMESPACE_OID = UUID('6ba7b812-9dad-11d1-80b4-00c04fd430c8')\nNAMESPACE_X500 = UUID('6ba7b814-9dad-11d1-80b4-00c04fd430c8')\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _find_mac(command, args, hw_identifiers, get_index):\n import os, shutil\n executable = shutil.which(command)\n if executable is None:\n path = os.pathsep.join(('/sbin', '/usr/sbin'))\n executable = shutil.which(command, path=path)\n if executable is None:\n return None\n\n try:\n # LC_ALL to ensure English output, 2>/dev/null to prevent output on\n # stderr (Note: we don't have an example where the words we search for\n # are actually localized, but in theory some system could do so.)\n cmd = 'LC_ALL=C %s %s 2>/dev/null' % (executable, args)\n with os.popen(cmd) as pipe:\n for line in pipe:\n words = line.lower().split()\n for i in range(len(words)):\n if words[i] in hw_identifiers:\n try:\n return int(\n words[get_index(i)].replace(':', ''), 16)\n except (ValueError, IndexError):\n # Virtual interfaces, such as those provided by\n # VPNs, do not have a colon-delimited MAC address\n # as expected, but a 16-byte HWAddr separated by\n # dashes. These should be ignored in favor of a\n # real MAC address\n pass\n except OSError:\n pass", "metadata": "root._find_mac", "header": "['module', '___EOS___']", "index": 313 }, { "content": "def _ipconfig_getnode():\n \"\"\"Get the hardware address on Windows by running ipconfig.exe.\"\"\"\n import os, re\n dirs = ['', r'c:\\windows\\system32', r'c:\\winnt\\system32']\n try:\n import ctypes\n buffer = ctypes.create_string_buffer(300)\n ctypes.windll.kernel32.GetSystemDirectoryA(buffer, 300)\n dirs.insert(0, buffer.value.decode('mbcs'))\n except:\n pass\n #for dir in dirs:\n #try:\n # pipe = os.popen(os.path.join(dir, 'ipconfig') + ' /all')\n #except OSError:\n # continue\n #else:\n # for line in pipe:\n # value = line.split(':')[-1].strip().lower()\n # if re.match('([0-9a-f][0-9a-f]-){5}[0-9a-f][0-9a-f]', value):\n # return int(value.replace('-', ''), 16)\n #finally:\n # pipe.close()", "metadata": "root._ipconfig_getnode", "header": "['module', '___EOS___']", "index": 369 }, { "content": "def uuid4():\n \"\"\"Generate a random UUID.\"\"\"\n\n # When the system provides a version-4 UUID generator, use it.\n if _uuid_generate_random:\n _buffer = ctypes.create_string_buffer(16)\n _uuid_generate_random(_buffer)\n return UUID(bytes=bytes_(_buffer.raw))\n\n # Otherwise, get randomness from urandom or the 'random' module.\n try:\n import os\n return UUID(bytes=os.urandom(16), version=4)\n except:\n import random\n bytes = bytes_(random.randrange(256) for i in range(16))\n return UUID(bytes=bytes, version=4)", "metadata": "root.uuid4", "header": "['module', '___EOS___']", "index": 563 } ]

[ { "span": "import os, shutil", "start_line": 314, "start_column": 4, "end_line": 314, "end_column": 21 }, { "span": "import os, re", "start_line": 371, "start_column": 4, "end_line": 371, "end_column": 17 }, { "span": "import ctypes", "start_line": 374, "start_column": 8, "end_line": 374, "end_column": 21 }, { "span": "import os", "start_line": 574, "start_column": 8, "end_line": 574, "end_column": 17 } ]

[ { "span": "import ctypes, ctypes.util", "start_line": 428, "start_column": 4, "end_line": 428, "end_column": 30 }, { "span": "import os", "start_line": 453, "start_column": 8, "end_line": 453, "end_column": 17 } ]

1

true

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

Unused local variable

Rediker-Software/doac/doac/contrib/rest_framework/authentication.py

[ { "content": " def authenticate(self, request):\n \"\"\"\n Send the request through the authentication middleware that\n is provided with DOAC and grab the user and token from it.\n \"\"\"\n\n from doac.middleware import AuthenticationMiddleware\n\n try:\n response = AuthenticationMiddleware().process_request(request)\n except:\n raise exceptions.AuthenticationFailed(\"Invalid handler\")\n\n if not hasattr(request, \"user\") or not request.user.is_authenticated():\n return None\n\n if not hasattr(request, \"access_token\"):\n raise exceptions.AuthenticationFailed(\"Access token was not valid\")\n\n return request.user, request.access_token", "metadata": "root.DoacAuthentication.authenticate", "header": "['class', 'DoacAuthentication', '(', 'authentication', '.', 'BaseAuthentication', ')', ':', '___EOS___']", "index": 5 } ]

[ { "span": "response ", "start_line": 14, "start_column": 12, "end_line": 14, "end_column": 20 } ]

[]

1

true

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Unused import

carpedm20/LINE/line/api.py

[ { "content": "# -*- coding: utf-8 -*-\n\"\"\"\n line.client\n ~~~~~~~~~~~\n\n LineClient for sending and receiving message from LINE server.\n\n :copyright: (c) 2014 by Taehoon Kim.\n :license: BSD, see LICENSE for more details.\n\"\"\"\nimport rsa\nimport requests\ntry:\n import simplejson as json\nexcept ImportError:\n import json\n\nfrom thrift.transport import TTransport\nfrom thrift.transport import TSocket\nfrom thrift.transport import THttpClient\nfrom thrift.protocol import TCompactProtocol\n\nimport sys\nreload(sys)\nsys.setdefaultencoding(\"utf-8\")\n\n#from curve import CurveThrift\nfrom curve import CurveThrift\nfrom curve.ttypes import TalkException\nfrom curve.ttypes import ToType, ContentType\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class LineAPI(object):\n \"\"\"This class is a wrapper of LINE API\n\n \"\"\"\n LINE_DOMAIN = \"http://gd2.line.naver.jp\"\n\n LINE_HTTP_URL = LINE_DOMAIN + \"/api/v4/TalkService.do\"\n LINE_HTTP_IN_URL = LINE_DOMAIN + \"/P4\"\n LINE_CERTIFICATE_URL = LINE_DOMAIN + \"/Q\"\n LINE_SESSION_LINE_URL = LINE_DOMAIN + \"/authct/v1/keys/line\"\n LINE_SESSION_NAVER_URL = LINE_DOMAIN + \"/authct/v1/keys/naver\"\n \n CERT_FILE = \".line.crt\"\n\n ip = \"127.0.0.1\"\n version = \"5.1.2\"\n com_name = \"\"\n revision = 0\n certificate = \"\"\n\n _headers = {}\n\n\n\n\n \n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.LineAPI", "header": "['module', '___EOS___']", "index": 31 }, { "content": " def __init__(self):\n object.__init__(self)\n self._session = requests.session()", "metadata": "root.LineAPI.__init__", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 53 }, { "content": " def ready(self):\n \"\"\"\n After login, make `client` and `client_in` instance\n to communicate with LINE server\n \"\"\"\n raise Exception(\"Code is removed because of the request of LINE corporation\")", "metadata": "root.LineAPI.ready", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 57 }, { "content": " def updateAuthToken(self):\n \"\"\"\n After login, update authToken to avoid expiration of\n authToken. This method skip the PinCode validation step.\n \"\"\"\n if self.certificate:\n self.login()\n self.tokenLogin()\n\n return True\n else:\n self.raise_error(\"You need to login first. There is no valid certificate\")", "metadata": "root.LineAPI.updateAuthToken", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 64 }, { "content": " def tokenLogin(self):\n self.transport = THttpClient.THttpClient(self.LINE_HTTP_URL)\n self.transport.setCustomHeaders(self._headers)\n\n self.protocol = TCompactProtocol.TCompactProtocol(self.transport)\n self._client = CurveThrift.Client(self.protocol)", "metadata": "root.LineAPI.tokenLogin", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 77 }, { "content": " def login(self):\n \"\"\"Login to LINE server.\"\"\"\n if self.provider == CurveThrift.Provider.LINE: # LINE\n j = self._get_json(self.LINE_SESSION_LINE_URL)\n else: # NAVER\n j = self._get_json(self.LINE_SESSION_NAVER_URL)\n\n session_key = j['session_key']\n message = (chr(len(session_key)) + session_key +\n chr(len(self.id)) + self.id +\n chr(len(self.password)) + self.password).encode('utf-8')\n\n keyname, n, e = j['rsa_key'].split(\",\")\n pub_key = rsa.PublicKey(int(n,16), int(e,16))\n crypto = rsa.encrypt(message, pub_key).encode('hex')\n\n self.transport = THttpClient.THttpClient(self.LINE_HTTP_URL)\n self.transport.setCustomHeaders(self._headers)\n\n self.protocol = TCompactProtocol.TCompactProtocol(self.transport)\n self._client = CurveThrift.Client(self.protocol)\n\n try:\n with open(self.CERT_FILE,'r') as f:\n self.certificate = f.read()\n f.close()\n except:\n self.certificate = \"\"\n\n msg = self._client.loginWithIdentityCredentialForCertificate(\n self.id, self.password, keyname, crypto, True, self.ip,\n self.com_name, self.provider, self.certificate)\n\n if msg.type == 1:\n self.certificate = msg.certificate\n self.authToken = self._headers['X-Line-Access'] = msg.authToken\n elif msg.type == 2:\n msg = \"require QR code\"\n self.raise_error(msg)\n elif msg.type == 3:\n self._headers['X-Line-Access'] = msg.verifier\n self._pinCode = msg.pinCode\n\n print \"Enter PinCode '%s' to your mobile phone in 2 minutes\"\\\n % self._pinCode\n\n j = self.get_json(self.LINE_CERTIFICATE_URL)\n self.verifier = j['result']['verifier']\n\n msg = self._client.loginWithVerifierForCertificate(self.verifier)\n if msg.type == 1:\n if msg.certificate is not None:\n with open(self.CERT_FILE,'w') as f:\n f.write(msg.certificate)\n self.certificate = msg.certificate\n if msg.authToken is not None:\n self.authToken = self._headers['X-Line-Access'] = msg.authToken\n return True\n else:\n return False\n else:\n msg = \"Require device confirm\"\n self.raise_error(msg)\n\n #raise Exception(\"Code is removed because of the request of LINE corporation\")\n else:\n self.authToken = self._headers['X-Line-Access'] = msg.authToken\n\n return True", "metadata": "root.LineAPI.login", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 84 }, { "content": " def get_json(self, url):\n \"\"\"Get josn from given url with saved session and headers\"\"\"\n return json.loads(self._session.get(url, headers=self._headers).text)", "metadata": "root.LineAPI.get_json", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 154 }, { "content": " def _getProfile(self):\n \"\"\"Get profile information\n\n :returns: Profile object\n - picturePath\n - displayName\n - phone (base64 encoded?)\n - allowSearchByUserid\n - pictureStatus\n - userid\n - mid # used for unique id for account\n - phoneticName\n - regionCode\n - allowSearchByEmail\n - email\n - statusMessage\n \"\"\"\n return self._client.getProfile()", "metadata": "root.LineAPI._getProfile", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 158 }, { "content": " def _getAllContactIds(self):\n \"\"\"Get all contacts of your LINE account\"\"\"\n return self._client.getAllContactIds()", "metadata": "root.LineAPI._getAllContactIds", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 177 }, { "content": " def _getBlockedContactIds(self):\n \"\"\"Get all blocked contacts of your LINE account\"\"\"\n return self._client.getBlockedContactIds()", "metadata": "root.LineAPI._getBlockedContactIds", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 181 }, { "content": " def _getContacts(self, ids):\n \"\"\"Get contact information list from ids\n\n :returns: List of Contact list\n - status\n - capableVideoCall\n - dispalyName\n - settings\n - pictureStatus\n - capableVoiceCall\n - capableBuddy\n - mid\n - displayNameOverridden\n - relation\n - thumbnailUrl\n - createdTime\n - facoriteTime\n - capableMyhome\n - attributes\n - type\n - phoneticName\n - statusMessage\n \"\"\"\n if type(ids) != list:\n msg = \"argument should be list of contact ids\"\n self.raise_error(msg)\n\n return self._client.getContacts(ids)", "metadata": "root.LineAPI._getContacts", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 185 }, { "content": " def _findAndAddContactsByMid(self, mid, seq=0):\n \"\"\"Find and add contacts by Mid\"\"\"\n return self._client.findAndAddContactsByMid(seq, mid)", "metadata": "root.LineAPI._findAndAddContactsByMid", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 214 }, { "content": " def _findContactByUserid(self, userid):\n \"\"\"Find contacts by Userid\"\"\"\n return self._client.findContactByUserid(userid)", "metadata": "root.LineAPI._findContactByUserid", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 218 }, { "content": " def _findAndAddContactsByUserid(self, userid, seq=0):\n \"\"\"Find and add contacts by Userid\"\"\"\n return self._client.findAndAddContactsByUserid(seq, userid)", "metadata": "root.LineAPI._findAndAddContactsByUserid", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 222 }, { "content": " def _findContactsByPhone(self, phones):\n \"\"\"Find contacts by phone\"\"\"\n return self._client.findContactsByPhone(phones)", "metadata": "root.LineAPI._findContactsByPhone", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 226 }, { "content": " def _findAndAddContactsByPhone(self, phones, seq=0):\n \"\"\"Find and add contacts by phone\"\"\"\n return self._client.findAndAddContactsByPhone(seq, phones)", "metadata": "root.LineAPI._findAndAddContactsByPhone", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 230 }, { "content": " def _findContactsByEmail(self, emails):\n \"\"\"Find contacts by email\"\"\"\n return self._client.findContactsByEmail(emails)", "metadata": "root.LineAPI._findContactsByEmail", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 234 }, { "content": " def _findAndAddContactsByEmail(self, emails, seq=0):\n \"\"\"Find and add contacts by email\"\"\"\n return self._client.findAndAddContactsByEmail(seq, emails)", "metadata": "root.LineAPI._findAndAddContactsByEmail", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 238 }, { "content": " def _createRoom(self, ids, seq=0):\n \"\"\"Create a chat room\"\"\"\n return self._client.createRoom(seq, ids)", "metadata": "root.LineAPI._createRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 242 }, { "content": " def _getRoom(self, id):\n \"\"\"Get a chat room\"\"\"\n return self._client.getRoom(id)", "metadata": "root.LineAPI._getRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 246 }, { "content": " def _inviteIntoRoom(self, roomId, contactIds=[]):\n \"\"\"Invite contacts into room\"\"\"\n return self._client.inviteIntoRoom(0, roomId, contactIds)", "metadata": "root.LineAPI._inviteIntoRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 250 }, { "content": " def _leaveRoom(self, id):\n \"\"\"Leave a chat room\"\"\"\n return self._client.leaveRoom(0, id)", "metadata": "root.LineAPI._leaveRoom", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 254 }, { "content": " def _createGroup(self, name, ids, seq=0):\n \"\"\"Create a group\"\"\"\n return self._client.createGroup(seq, name, ids)", "metadata": "root.LineAPI._createGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 258 }, { "content": " def _getGroups(self, ids):\n \"\"\"Get a list of group with ids\"\"\"\n if type(ids) != list:\n msg = \"argument should be list of group ids\"\n self.raise_error(msg)\n\n return self._client.getGroups(ids)", "metadata": "root.LineAPI._getGroups", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 262 }, { "content": " def _getGroupIdsJoined(self):\n \"\"\"Get group id that you joined\"\"\"\n return self._client.getGroupIdsJoined()", "metadata": "root.LineAPI._getGroupIdsJoined", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 270 }, { "content": " def _getGroupIdsInvited(self):\n \"\"\"Get group id that you invited\"\"\"\n return self._client.getGroupIdsInvited()", "metadata": "root.LineAPI._getGroupIdsInvited", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 274 }, { "content": " def _acceptGroupInvitation(self, groupId, seq=0):\n \"\"\"Accept a group invitation\"\"\"\n return self._client.acceptGroupInvitation(seq, groupId)", "metadata": "root.LineAPI._acceptGroupInvitation", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 278 }, { "content": " def _kickoutFromGroup(self, groupId, contactIds=[], seq=0):\n \"\"\"Kick a group members\"\"\"\n return self._client.kickoutFromGroup(seq, groupId, contactIds)", "metadata": "root.LineAPI._kickoutFromGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 282 }, { "content": " def _cancelGroupInvitation(self, groupId, contactIds=[], seq=0):\n \"\"\"Cancel a group invitation\"\"\"\n return self._client.cancelGroupInvitation(seq, groupId, contactIds)", "metadata": "root.LineAPI._cancelGroupInvitation", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 286 }, { "content": " def _inviteIntoGroup(self, groupId, contactIds=[], seq=0):\n \"\"\"Invite contacts into group\"\"\"\n return self._client.inviteIntoGroup(seq, groupId, contactIds)", "metadata": "root.LineAPI._inviteIntoGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 290 }, { "content": " def _leaveGroup(self, id):\n \"\"\"Leave a group\"\"\"\n return self._client.leaveGroup(0, id)", "metadata": "root.LineAPI._leaveGroup", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 294 }, { "content": " def _getRecentMessages(self, id, count=1):\n \"\"\"Get recent messages from `id`\"\"\"\n return self._client.getRecentMessages(id, count)", "metadata": "root.LineAPI._getRecentMessages", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 298 }, { "content": " def _sendMessage(self, message, seq=0):\n \"\"\"Send a message to `id`. `id` could be contact id or group id\n\n :param message: `message` instance\n \"\"\"\n return self._client.sendMessage(seq, message)", "metadata": "root.LineAPI._sendMessage", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 302 }, { "content": " def _getLastOpRevision(self):\n return self._client.getLastOpRevision()", "metadata": "root.LineAPI._getLastOpRevision", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 309 }, { "content": " def _fetchOperations(self, revision, count=50):\n return self._client.fetchOperations(revision, count)", "metadata": "root.LineAPI._fetchOperations", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 312 }, { "content": " def _getMessageBoxCompactWrapUp(self, id):\n try:\n return self._client.getMessageBoxCompactWrapUp(id)\n except:\n return None", "metadata": "root.LineAPI._getMessageBoxCompactWrapUp", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 315 }, { "content": " def _getMessageBoxCompactWrapUpList(self, start=1, count=50):\n try:\n return self._client.getMessageBoxCompactWrapUpList(start, count)\n except Exception as e:\n msg = e\n self.raise_error(msg)", "metadata": "root.LineAPI._getMessageBoxCompactWrapUpList", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 321 }, { "content": " def raise_error(self, msg):\n \"\"\"Error format\"\"\"\n raise Exception(\"Error: %s\" % msg)", "metadata": "root.LineAPI.raise_error", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 328 }, { "content": " def _get_json(self, url):\n \"\"\"Get josn from given url with saved session and headers\"\"\"\n return json.loads(self._session.get(url, headers=self._headers).text)", "metadata": "root.LineAPI._get_json", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 332 }, { "content": " def post_content(self, url, data=None, files=None):\n return self._session.post(url, headers=self._headers, data=data, files=files)", "metadata": "root.LineAPI.post_content", "header": "['class', 'LineAPI', '(', 'object', ')', ':', '___EOS___']", "index": 336 } ]

[ { "span": "from thrift.transport import TTransport", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 39 }, { "span": "from thrift.transport import TSocket", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 36 }, { "span": "from curve.ttypes import TalkException", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 38 }, { "span": "from curve.ttypes import ToType, ContentType", "start_line": 29, "start_column": 0, "end_line": 29, "end_column": 44 } ]

[]

1

false

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Unused import

grafos-ml/test.fm/src/testfm/models/graphchi_models.py

[ { "content": "__author__ = 'linas'\n\nimport os\nimport logging\nimport subprocess\nimport tempfile\nimport datetime\nimport numpy as np\nfrom testfm.models.cutil.interface import IModel\nlogger = logging.getLogger(__name__)\nfrom scipy.io.mmio import mminfo, mmread, mmwrite\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class SVDpp(IModel):\n\n\n\n\n\n\n\n", "metadata": "root.SVDpp", "header": "['module', '___EOS___']", "index": 13 }, { "content": " def __init__(self, tmp_dir=\"/tmp\"):\n self.tmp_dir = tmp_dir\n params = {k: v[2] for k,v in self.param_details().items()}\n self.set_params(**params)", "metadata": "root.SVDpp.__init__", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 15 }, { "content": " def get_score(self, user, item):\n uid = self.umap[user]\n iid = self.imap[item]\n #check, I think graphchi changed the ouput?\n #u = np.add(self.U[uid, :10], self.U[uid, 10:])\n pred = self.global_mean + self.U_bias[uid] + self.V_bias[iid] + np.dot(self.U[uid], self.V[iid])\n return float(pred)", "metadata": "root.SVDpp.get_score", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 20 }, { "content": " def set_params(self, n_iterations=5, c_lambda=.05, c_gamma=.01):\n \"\"\"\n Set the parameters for the TensorCoFi\n \"\"\"\n self._n_iterations = n_iterations\n self._c_lambda = c_lambda\n self._c_gamma = c_gamma", "metadata": "root.SVDpp.set_params", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 28 }, { "content": " @classmethod\n def param_details(cls):\n \"\"\"\n Return parameter details for parameters\n \"\"\"\n return {\n #sorry but authors of svdpp do not provide a way to set dimensionality 'dim': (2, 100, 2, 5),\n 'n_iterations': (1, 20, 2, 5),\n 'c_lambda': (.1, 1., .1, .05),\n 'c_gamma': (0.001, 1.0, 0.1, 0.01)\n }", "metadata": "root.SVDpp.param_details", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 36 }, { "content": " def fit(self, training_data):\n training_filename = self.dump_data(training_data)\n logger.debug(\"Started training model {}\".format(__name__))\n cmd = \" \".join([\"svdpp\",\n \"--training={} \".format(training_filename),\n \"--biassgd_lambda={}\".format(self._c_lambda),\n \"--biassgd_gamma={}\".format(self._c_gamma),\n \"--minval=1 \",\n \"--maxval=5 \",\n \"--max_iter={}\".format(self._n_iterations),\n \"--quiet=1 \"])\n logger.debug(cmd)\n self.execute_command(cmd)\n\n self.global_mean = self.read_matrix(training_filename+\"_global_mean.mm\")\n self.U = self.read_matrix(training_filename+\"_U.mm\")\n self.V = self.read_matrix(training_filename+\"_V.mm\")\n #print training_filename\n self.U_bias = self.read_matrix(training_filename+\"_U_bias.mm\")\n self.V_bias = self.read_matrix(training_filename+\"_V_bias.mm\")", "metadata": "root.SVDpp.fit", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 48 }, { "content": " def dump_data(self, df):\n #first we need to reindex user and item and store their new ids\n _, df['u'] = np.unique(df.user, return_inverse=True)\n _, df['i'] = np.unique(df.item, return_inverse=True)\n\n self.umap = {\n key[0]: key[1] for key, _ in df.groupby(['user', 'u'])\n }\n\n self.imap = {\n key[0]: key[1] for key, _ in df.groupby(['item', 'i'])\n }\n\n filename = tempfile.mkstemp(prefix='graphchi', dir=self.tmp_dir, suffix=\".mtx\")\n f = os.fdopen(filename[0], \"w\")\n #print filename[1]\n f.write(\"%%MatrixMarket matrix coordinate real general\\n\")\n f.write(\"% Generated {}\\n\".format(datetime.datetime.now()))\n f.write(\"{} {} {}\\n\".format(len(df.user.unique()), len(df.item.unique()), len(df)))\n for idx, row in df.iterrows():\n r = int(row['rating'])\n if r == 0:\n r = 1\n f.write(\"{} {} {}\\n\".format(row['u']+1,row['i']+1,r))\n f.close()\n return filename[1]", "metadata": "root.SVDpp.dump_data", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 69 }, { "content": " def execute_command(self, cmd):\n if not os.environ['GRAPHCHI_ROOT']:\n raise EnvironmentError(\"Please set GRAPHCHI_ROOT\")\n #print cmd\n sub = subprocess.Popen(cmd.split(), stdout=subprocess.PIPE, stderr=subprocess.PIPE)\n out, err = sub.communicate()", "metadata": "root.SVDpp.execute_command", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 96 }, { "content": " def read_matrix(self, filename):\n \"\"\"\n reads grapchi format in the numpy array. The order is wrong in grapchi, therefore, we play tricks.\n\n About the second (order of rows vs. columns), we have a problem that in distributed graphlab we\n output the matrix by rows, since each node is a row, and nodes are on different machines.\n So to be compatible I left GraphChi code to confirm to GraphLab. In case it helps, here is a matlab mmread.m\n function which switches the order to be sorted by rows http://select.cs.cmu.edu/code/graphlab/mmread.m\n I am not sure if it is easy to fix it in python or not. [...]\n You are definitely right the the standard describes column\n order and not row order.\n \"\"\"\n\n logger.debug(\"Loading matrix market matrix \")\n f = open(filename, \"rb\")\n r = mmread(f)\n m = np.array(r.ravel())\n m = m.reshape(r.shape, order='F')\n # print \"mmread\", r.ravel(), r.shape\n # print \"trans\", m.ravel(), m.shape\n # if m.shape[0] > 1:\n # print m[1]\n f.close()\n return m", "metadata": "root.SVDpp.read_matrix", "header": "['class', 'SVDpp', '(', 'IModel', ')', ':', '___EOS___']", "index": 103 } ]

[ { "span": "from scipy.io.mmio import mminfo, mmread, mmwrite", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 49 } ]

[]

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Variable defined multiple times

ardekantur/pyglet/tests/resource/RES_LOAD.py

[ { "content": " def test16a(self):\n self.check_file(['dir1/res.zip/'], 'dir1/file.txt', 'F8')", "metadata": "root.TestCase.test16a", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 146 }, { "content": " def test16a(self):\n self.check_file(['dir1/res.zip/'], 'dir1/dir1/file.txt', 'F9')", "metadata": "root.TestCase.test16a", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 149 } ]

[ { "span": "test16a(", "start_line": 146, "start_column": 8, "end_line": 146, "end_column": 15 } ]

[ { "span": "test16a(", "start_line": 149, "start_column": 8, "end_line": 149, "end_column": 15 } ]

1

true

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Unused import

ProgVal/Limnoria/plugins/Ctcp/plugin.py

[ { "content": "###\n# Copyright (c) 2002-2004, Jeremiah Fincher\n# All rights reserved.\n#\n# Redistribution and use in source and binary forms, with or without\n# modification, are permitted provided that the following conditions are met:\n#\n# * Redistributions of source code must retain the above copyright notice,\n# this list of conditions, and the following disclaimer.\n# * Redistributions in binary form must reproduce the above copyright notice,\n# this list of conditions, and the following disclaimer in the\n# documentation and/or other materials provided with the distribution.\n# * Neither the name of the author of this software nor the name of\n# contributors to this software may be used to endorse or promote products\n# derived from this software without specific prior written consent.\n#\n# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\n# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\n# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE\n# ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE\n# LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR\n# CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF\n# SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS\n# INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN\n# CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)\n# ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE\n# POSSIBILITY OF SUCH DAMAGE.\n###\n\nimport time\n\nimport supybot.conf as conf\nimport supybot.utils as utils\nfrom supybot.commands import *\nimport supybot.ircmsgs as ircmsgs\nimport supybot.ircutils as ircutils\nimport supybot.schedule as schedule\nimport supybot.callbacks as callbacks\nfrom supybot.i18n import PluginInternationalization, internationalizeDocstring\n_ = PluginInternationalization('Ctcp')\n\n\nClass = Ctcp\n# vim:set shiftwidth=4 softtabstop=4 expandtab textwidth=79:\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Ctcp(callbacks.PluginRegexp):\n \"\"\"Provides replies to common CTCPs (version, time, etc.), and a command\n to fetch version responses from channels.\"\"\"\n public = False\n regexps = ('ctcpPing', 'ctcpVersion', 'ctcpUserinfo',\n 'ctcpTime', 'ctcpFinger', 'ctcpSource')\n\n\n\n\n\n\n\n\n\n\n\n version = wrap(version, ['channel', getopts({'nicks':''})])", "metadata": "root.Ctcp", "header": "['module', '___EOS___']", "index": 41 }, { "content": " def __init__(self, irc):\n self.__parent = super(Ctcp, self)\n self.__parent.__init__(irc)\n self.ignores = ircutils.IrcDict()\n self.floods = ircutils.FloodQueue(conf.supybot.abuse.flood.interval())\n conf.supybot.abuse.flood.interval.addCallback(self.setFloodQueueTimeout)", "metadata": "root.Ctcp.__init__", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 47 }, { "content": " def setFloodQueueTimeout(self, *args, **kwargs):\n self.floods.timeout = conf.supybot.abuse.flood.interval()", "metadata": "root.Ctcp.setFloodQueueTimeout", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 54 }, { "content": " def callCommand(self, command, irc, msg, *args, **kwargs):\n if conf.supybot.abuse.flood.ctcp():\n now = time.time()\n for (ignore, expiration) in self.ignores.items():\n if expiration < now:\n del self.ignores[ignore]\n elif ircutils.hostmaskPatternEqual(ignore, msg.prefix):\n return\n self.floods.enqueue(msg)\n max = conf.supybot.abuse.flood.ctcp.maximum()\n if self.floods.len(msg) > max:\n expires = conf.supybot.abuse.flood.ctcp.punishment()\n self.log.warning('Apparent CTCP flood from %s, '\n 'ignoring CTCP messages for %s seconds.',\n msg.prefix, expires)\n ignoreMask = '*!%s@%s' % (msg.user, msg.host)\n self.ignores[ignoreMask] = now + expires\n return\n self.__parent.callCommand(command, irc, msg, *args, **kwargs)", "metadata": "root.Ctcp.callCommand", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 57 }, { "content": " def _reply(self, irc, msg, s):\n s = '\\x01%s\\x01' % s\n irc.reply(s, notice=True, private=True, to=msg.nick)", "metadata": "root.Ctcp._reply", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 77 }, { "content": " def ctcpPing(self, irc, msg, match):\n \"^\\x01PING(?: (.+))?\\x01$\"\n self.log.info('Received CTCP PING from %s', msg.prefix)\n payload = match.group(1)\n if payload:\n self._reply(irc, msg, 'PING %s' % match.group(1))\n else:\n self._reply(irc, msg, 'PING')", "metadata": "root.Ctcp.ctcpPing", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 81 }, { "content": " def ctcpVersion(self, irc, msg, match):\n \"^\\x01VERSION\\x01$\"\n self.log.info('Received CTCP VERSION from %s', msg.prefix)\n self._reply(irc, msg, 'VERSION Supybot %s' % conf.version)", "metadata": "root.Ctcp.ctcpVersion", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 90 }, { "content": " def ctcpUserinfo(self, irc, msg, match):\n \"^\\x01USERINFO\\x01$\"\n self.log.info('Received CTCP USERINFO from %s', msg.prefix)\n self._reply(irc, msg, 'USERINFO %s' % self.registryValue('userinfo'))", "metadata": "root.Ctcp.ctcpUserinfo", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 95 }, { "content": " def ctcpTime(self, irc, msg, match):\n \"^\\x01TIME\\x01$\"\n self.log.info('Received CTCP TIME from %s', msg.prefix)\n self._reply(irc, msg, 'TIME %s' % time.ctime())", "metadata": "root.Ctcp.ctcpTime", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 100 }, { "content": " def ctcpFinger(self, irc, msg, match):\n \"^\\x01FINGER\\x01$\"\n self.log.info('Received CTCP FINGER from %s', msg.prefix)\n self._reply(irc, msg, 'FINGER ' + \n _('Supybot, the best Python IRC bot in existence!'))", "metadata": "root.Ctcp.ctcpFinger", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 105 }, { "content": " def ctcpSource(self, irc, msg, match):\n \"^\\x01SOURCE\\x01$\"\n self.log.info('Received CTCP SOURCE from %s', msg.prefix)\n self._reply(irc, msg,\n 'SOURCE https://github.com/ProgVal/Limnoria')", "metadata": "root.Ctcp.ctcpSource", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 111 }, { "content": " def doNotice(self, irc, msg):\n if ircmsgs.isCtcp(msg):\n try:\n (version, payload) = msg.args[1][1:-1].split(None, 1)\n except ValueError:\n return\n if version == 'VERSION':\n self.versions.setdefault(payload, []).append(msg.nick)", "metadata": "root.Ctcp.doNotice", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 117 }, { "content": " @internationalizeDocstring\n def version(self, irc, msg, args, channel, optlist):\n \"\"\"[<channel>] [--nicks]\n\n Sends a CTCP VERSION to <channel>, returning the various\n version strings returned. It waits for 10 seconds before returning\n the versions received at that point. If --nicks is given, nicks are\n associated with the version strings; otherwise, only the version\n strings are given.\n \"\"\"\n self.versions = ircutils.IrcDict()\n nicks = False\n for (option, arg) in optlist:\n if option == 'nicks':\n nicks = True\n irc.queueMsg(ircmsgs.privmsg(channel, '\\x01VERSION\\x01'))\n def doReply():\n if self.versions:\n L = []\n for (reply, nickslist) in self.versions.items():\n if nicks:\n L.append(format('%L responded with %q', nickslist, reply))\n else:\n L.append(reply)\n irc.reply(format('%L', L))\n else:\n irc.reply('I received no version responses.')\n wait = self.registryValue('versionWait')\n schedule.addEvent(doReply, time.time()+wait)", "metadata": "root.Ctcp.version", "header": "['class', 'Ctcp', '(', 'callbacks', '.', 'PluginRegexp', ')', ':', '___EOS___']", "index": 126 } ]

[ { "span": "import supybot.utils as utils", "start_line": 32, "start_column": 0, "end_line": 32, "end_column": 29 } ]

[]

1

false

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Imprecise assert

Matt-Deacalion/Pomodoro-Calculator/pomodoro_calculator/test/test_main.py

[ { "content": " def test_retriever_class_exists(self):\n \"\"\"\n Does the `PomodoroCalculator` class exist?\n \"\"\"\n self.assertTrue('PomodoroCalculator' in globals())", "metadata": "root.PomodoroTest.test_retriever_class_exists", "header": "['class', 'PomodoroTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 13 } ]

[ { "span": "self.assertTrue('PomodoroCalculator' in globals())", "start_line": 17, "start_column": 8, "end_line": 17, "end_column": 58 } ]

[]

1

true

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Unused import

bitxbay/BitXBay/electru/build/lib/electrum_plugins/pointofsale.py

[ { "content": "import re\nimport platform\nfrom decimal import Decimal\nfrom urllib import quote\n\nfrom PyQt4.QtGui import *\nfrom PyQt4.QtCore import *\nimport PyQt4.QtCore as QtCore\nimport PyQt4.QtGui as QtGui\n\nfrom electrum_gui.qt.qrcodewidget import QRCodeWidget\n\nfrom electrum import bmp, pyqrnative, BasePlugin\nfrom electrum.i18n import _\n\n\nif platform.system() == 'Windows':\n MONOSPACE_FONT = 'Lucida Console'\nelif platform.system() == 'Darwin':\n MONOSPACE_FONT = 'Monaco'\nelse:\n MONOSPACE_FONT = 'monospace'\n\ncolumn_index = 4\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class QR_Window(QWidget):\n\n\n", "metadata": "root.QR_Window", "header": "['module', '___EOS___']", "index": 25 }, { "content": " def __init__(self, exchanger):\n QWidget.__init__(self)\n self.exchanger = exchanger\n self.setWindowTitle('Electrum - '+_('Invoice'))\n self.setMinimumSize(800, 250)\n self.address = ''\n self.label = ''\n self.amount = 0\n self.setFocusPolicy(QtCore.Qt.NoFocus)\n\n main_box = QHBoxLayout()\n \n self.qrw = QRCodeWidget()\n main_box.addWidget(self.qrw, 1)\n\n vbox = QVBoxLayout()\n main_box.addLayout(vbox)\n\n self.address_label = QLabel(\"\")\n #self.address_label.setFont(QFont(MONOSPACE_FONT))\n vbox.addWidget(self.address_label)\n\n self.label_label = QLabel(\"\")\n vbox.addWidget(self.label_label)\n\n self.amount_label = QLabel(\"\")\n vbox.addWidget(self.amount_label)\n\n vbox.addStretch(1)\n self.setLayout(main_box)", "metadata": "root.QR_Window.__init__", "header": "['class', 'QR_Window', '(', 'QWidget', ')', ':', '___EOS___']", "index": 27 }, { "content": " def set_content(self, addr, label, amount, currency):\n self.address = addr\n address_text = \"<span style='font-size: 18pt'>%s</span>\" % addr if addr else \"\"\n self.address_label.setText(address_text)\n\n if currency == 'BTC': currency = None\n amount_text = ''\n if amount:\n if currency:\n try:\n self.amount = Decimal(amount) / self.exchanger.exchange(1, currency) if currency else amount\n except Exception:\n self.amount = None\n else:\n self.amount = Decimal(amount)\n self.amount = self.amount.quantize(Decimal('1.0000'))\n\n if currency:\n amount_text += \"<span style='font-size: 18pt'>%s %s</span><br/>\" % (amount, currency)\n amount_text += \"<span style='font-size: 21pt'>%s</span> <span style='font-size: 16pt'>BTC</span> \" % str(self.amount) \n else:\n self.amount = None\n \n self.amount_label.setText(amount_text)\n\n self.label = label\n label_text = \"<span style='font-size: 21pt'>%s</span>\" % label if label else \"\"\n self.label_label.setText(label_text)\n\n msg = 'bitcoin:'+self.address\n if self.amount is not None:\n msg += '?amount=%s'%(str( self.amount))\n if self.label is not None:\n encoded_label = quote(self.label)\n msg += '&label=%s'%(encoded_label)\n elif self.label is not None:\n encoded_label = quote(self.label)\n msg += '?label=%s'%(encoded_label)\n \n self.qrw.set_addr( msg )", "metadata": "root.QR_Window.set_content", "header": "['class', 'QR_Window', '(', 'QWidget', ')', ':', '___EOS___']", "index": 59 }, { "content": "class Plugin(BasePlugin):\n\n\n\n\n\n\n\n \n\n\n \n\n\n\n\n \n\n\n \n\n\n \n\n\n\n\n\n ", "metadata": "root.Plugin", "header": "['module', '___EOS___']", "index": 103 }, { "content": " def fullname(self):\n return 'Point of Sale'", "metadata": "root.Plugin.fullname", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 105 }, { "content": " def description(self):\n return _('Show QR code window and amounts requested for each address. Add menu item to request amount.')+_(' Note: This requires the exchange rate plugin to be installed.')", "metadata": "root.Plugin.description", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 108 }, { "content": " def init(self):\n self.window = self.gui.main_window\n self.wallet = self.window.wallet\n\n self.qr_window = None\n self.merchant_name = self.config.get('merchant_name', 'Invoice')\n\n self.window.expert_mode = True\n self.window.receive_list.setColumnCount(5)\n self.window.receive_list.setHeaderLabels([ _('Address'), _('Label'), _('Balance'), _('Tx'), _('Request')])\n self.requested_amounts = {}\n self.toggle_QR_window(True)", "metadata": "root.Plugin.init", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 111 }, { "content": " def enable(self):\n if not self.config.get('use_exchange_rate'):\n self.gui.main_window.show_message(\"Please enable exchange rates first!\")\n return False\n\n return BasePlugin.enable(self)", "metadata": "root.Plugin.enable", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 124 }, { "content": " def load_wallet(self, wallet):\n self.wallet = wallet\n self.requested_amounts = self.wallet.storage.get('requested_amounts',{}) ", "metadata": "root.Plugin.load_wallet", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 132 }, { "content": " def close(self):\n self.window.receive_list.setHeaderLabels([ _('Address'), _('Label'), _('Balance'), _('Tx')])\n self.window.receive_list.setColumnCount(4)\n for i,width in enumerate(self.window.column_widths['receive']):\n self.window.receive_list.setColumnWidth(i, width)\n self.toggle_QR_window(False)", "metadata": "root.Plugin.close", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 136 }, { "content": " def close_main_window(self):\n if self.qr_window: \n self.qr_window.close()\n self.qr_window = None", "metadata": "root.Plugin.close_main_window", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 144 }, { "content": " def timer_actions(self):\n if self.qr_window:\n self.qr_window.qrw.update_qr()", "metadata": "root.Plugin.timer_actions", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 150 }, { "content": " def toggle_QR_window(self, show):\n if show and not self.qr_window:\n self.qr_window = QR_Window(self.gui.exchanger)\n self.qr_window.setVisible(True)\n self.qr_window_geometry = self.qr_window.geometry()\n item = self.window.receive_list.currentItem()\n if item:\n address = str(item.text(1))\n label = self.wallet.labels.get(address)\n amount, currency = self.requested_amounts.get(address, (None, None))\n self.qr_window.set_content( address, label, amount, currency )\n\n elif show and self.qr_window and not self.qr_window.isVisible():\n self.qr_window.setVisible(True)\n self.qr_window.setGeometry(self.qr_window_geometry)\n\n elif not show and self.qr_window and self.qr_window.isVisible():\n self.qr_window_geometry = self.qr_window.geometry()\n self.qr_window.setVisible(False)", "metadata": "root.Plugin.toggle_QR_window", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 155 }, { "content": " def update_receive_item(self, address, item):\n try:\n amount, currency = self.requested_amounts.get(address, (None, None))\n except Exception:\n print \"cannot get requested amount\", address, self.requested_amounts.get(address)\n amount, currency = None, None\n self.requested_amounts.pop(address)\n\n amount_str = amount + (' ' + currency if currency else '') if amount is not None else ''\n item.setData(column_index,0,amount_str)", "metadata": "root.Plugin.update_receive_item", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 177 }, { "content": " def current_item_changed(self, a):\n if not self.wallet: \n return\n if a is not None and self.qr_window and self.qr_window.isVisible():\n address = str(a.text(0))\n label = self.wallet.labels.get(address)\n try:\n amount, currency = self.requested_amounts.get(address, (None, None))\n except Exception:\n amount, currency = None, None\n self.qr_window.set_content( address, label, amount, currency )", "metadata": "root.Plugin.current_item_changed", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 190 }, { "content": " def item_changed(self, item, column):\n if column != column_index:\n return\n address = str( item.text(0) )\n text = str( item.text(column) )\n try:\n seq = self.wallet.get_address_index(address)\n index = seq[1][1]\n except Exception:\n print \"cannot get index\"\n return\n\n text = text.strip().upper()\n #print text\n m = re.match('^(\\d*(|\\.\\d*))\\s*(|BTC|EUR|USD|GBP|CNY|JPY|RUB|BRL)$', text)\n if m and m.group(1) and m.group(1)!='.':\n amount = m.group(1)\n currency = m.group(3)\n if not currency:\n currency = 'BTC'\n else:\n currency = currency.upper()\n \n self.requested_amounts[address] = (amount, currency)\n self.wallet.storage.put('requested_amounts', self.requested_amounts, True)\n\n label = self.wallet.labels.get(address)\n if label is None:\n label = self.merchant_name + ' - %04d'%(index+1)\n self.wallet.labels[address] = label\n\n if self.qr_window:\n self.qr_window.set_content( address, label, amount, currency )\n\n else:\n item.setText(column,'')\n if address in self.requested_amounts:\n self.requested_amounts.pop(address)\n \n self.window.update_receive_item(self.window.receive_list.currentItem())", "metadata": "root.Plugin.item_changed", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 204 }, { "content": " def edit_amount(self):\n l = self.window.receive_list\n item = l.currentItem()\n item.setFlags(Qt.ItemIsEditable|Qt.ItemIsSelectable | Qt.ItemIsUserCheckable | Qt.ItemIsEnabled | Qt.ItemIsDragEnabled)\n l.editItem( item, column_index )\n item.setFlags(Qt.ItemIsSelectable | Qt.ItemIsUserCheckable | Qt.ItemIsEnabled | Qt.ItemIsDragEnabled)", "metadata": "root.Plugin.edit_amount", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 248 }, { "content": " def receive_menu(self, menu, addr):\n menu.addAction(_(\"Request amount\"), self.edit_amount)\n menu.addAction(_(\"Show Invoice\"), lambda: self.toggle_QR_window(True))", "metadata": "root.Plugin.receive_menu", "header": "['class', 'Plugin', '(', 'BasePlugin', ')', ':', '___EOS___']", "index": 256 } ]

[ { "span": "import PyQt4.QtGui as QtGui", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 27 }, { "span": "from electrum import bmp, pyqrnative, BasePlugin", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 48 } ]

[]

1

false

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Non-standard exception raised in special method

katharosada/botchallenge/client/google/protobuf/internal/cpp_message.py

[ { "content": " def __hash__(self):\n raise TypeError('unhashable object')", "metadata": "root.RepeatedScalarContainer.__hash__", "header": "['class', 'RepeatedScalarContainer', '(', 'object', ')', ':', '___EOS___']", "index": 158 }, { "content": " def __hash__(self):\n raise TypeError('unhashable object')", "metadata": "root.RepeatedCompositeContainer.__hash__", "header": "['class', 'RepeatedCompositeContainer', '(', 'object', ')', ':', '___EOS___']", "index": 246 } ]

[ { "span": "def __hash__(self):", "start_line": 158, "start_column": 2, "end_line": 158, "end_column": 21 }, { "span": "def __hash__(self):", "start_line": 246, "start_column": 2, "end_line": 246, "end_column": 21 } ]

[]

1

true

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Unused import

deanmalmgren/flo/flo/shell.py

[ { "content": "\"\"\"Module for executing commands on the command line\n\"\"\"\nimport subprocess\nimport sys\nimport threading\n\nfrom . import exceptions\nfrom . import logger as flo_logger\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def log_output(stream, block_size=1):\n \"\"\"This function logs the output from the subprocess'ed command by\n reading the output stream in small blocks of size `block_size`\n bytes to properly handle backspacing outputs (issue #53)\n \"\"\"\n logger = flo_logger.get()\n while True:\n data = stream.read(block_size)\n if not data:\n break\n logger.write(data)\n stream.close()", "metadata": "root.log_output", "header": "['module', '___EOS___']", "index": 10 }, { "content": "def run(directory, command):\n \"\"\"Run the specified shell command using Fabric-like behavior.\"\"\"\n\n # combine stderr and stdout output when running command so we can\n # stream output to the logger for output to terminal and file\n # simultaneously\n wrapped_command = \"cd %s && %s\" % (directory, command)\n pipe = subprocess.Popen(\n wrapped_command, shell=True,\n stdout=subprocess.PIPE, stderr=subprocess.STDOUT,\n )\n\n # this uses threading to capture the output in real time in a\n # non-blocking way and use the log_output function to report the\n # output using the logging module. This framework takes\n # inspiration from http://stackoverflow.com/a/4985080/564709\n thread = threading.Thread(target=log_output, args=(pipe.stdout,))\n thread.daemon = True\n thread.start()\n thread.join()\n pipe.wait()\n\n # if pipe is busted, raise an error\n if pipe.returncode != 0:\n raise exceptions.ShellError(pipe.returncode)", "metadata": "root.run", "header": "['module', '___EOS___']", "index": 24 } ]

[ { "span": "import sys", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 10 } ]

[]

1

false

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Variable defined multiple times

mtth/hdfs/test/test_client.py

[ { "content": " def test_with_selection(self):\n fnames = ['part-m-00000.avro', 'part-m-00001.avro']\n self.client.write(psp.join('foo', '.header'), 'metadata')\n self.client.write(psp.join('foo', fnames[0]), 'first')\n self.client.write(psp.join('foo', fnames[1]), 'second')\n parts = self.client.parts('foo', parts=1)\n eq_(len(parts), 1)\n ok_(parts[0] in fnames)", "metadata": "root.TestParts.test_with_selection", "header": "['class', 'TestParts', '(', '_IntegrationTest', ')', ':', '___EOS___']", "index": 1031 }, { "content": " def test_with_selection(self):\n fnames = ['part-m-00000.avro', 'part-m-00001.avro']\n self.client.write(psp.join('foo', '.header'), 'metadata')\n self.client.write(psp.join('foo', fnames[0]), 'first')\n self.client.write(psp.join('foo', fnames[1]), 'second')\n eq_(self.client.parts('foo', parts=[1]), fnames[1:])", "metadata": "root.TestParts.test_with_selection", "header": "['class', 'TestParts', '(', '_IntegrationTest', ')', ':', '___EOS___']", "index": 1040 } ]

[ { "span": "test_with_selection(", "start_line": 1031, "start_column": 6, "end_line": 1031, "end_column": 25 } ]

[ { "span": "test_with_selection(", "start_line": 1040, "start_column": 6, "end_line": 1040, "end_column": 25 } ]

1

true

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Unused import

scieloorg/scielo-manager/scielomanager/journalmanager/migrations/0015_fix_nulls_in_init_vol.py

[ { "content": "# -*- coding: utf-8 -*-\nfrom south.utils import datetime_utils as datetime\nfrom south.db import db\nfrom south.v2 import DataMigration\nfrom django.db import models\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Migration(DataMigration):\n\n\n\n models = {\n 'auth.group': {\n 'Meta': {'object_name': 'Group'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),\n 'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Permission']\", 'symmetrical': 'False', 'blank': 'True'})\n },\n 'auth.permission': {\n 'Meta': {'ordering': \"('content_type__app_label', 'content_type__model', 'codename')\", 'unique_together': \"(('content_type', 'codename'),)\", 'object_name': 'Permission'},\n 'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['contenttypes.ContentType']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})\n },\n 'auth.user': {\n 'Meta': {'object_name': 'User'},\n 'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),\n 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),\n 'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),\n 'groups': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Group']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),\n 'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),\n 'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),\n 'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['auth.Permission']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})\n },\n 'contenttypes.contenttype': {\n 'Meta': {'ordering': \"('name',)\", 'unique_together': \"(('app_label', 'model'),)\", 'object_name': 'ContentType', 'db_table': \"'django_content_type'\"},\n 'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})\n },\n 'journalmanager.aheadpressrelease': {\n 'Meta': {'object_name': 'AheadPressRelease', '_ormbases': ['journalmanager.PressRelease']},\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'press_releases'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'pressrelease_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['journalmanager.PressRelease']\", 'unique': 'True', 'primary_key': 'True'})\n },\n 'journalmanager.article': {\n 'Meta': {'object_name': 'Article'},\n 'aid': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '32'}),\n 'article_type': ('django.db.models.fields.CharField', [], {'max_length': '32', 'db_index': 'True'}),\n 'articles_linkage_is_pending': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'created_at': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now', 'auto_now_add': 'True', 'blank': 'True'}),\n 'doi': ('django.db.models.fields.CharField', [], {'default': \"u''\", 'max_length': '2048', 'db_index': 'True'}),\n 'domain_key': ('django.db.models.fields.SlugField', [], {'unique': 'True', 'max_length': '2048', 'db_index': 'False'}),\n 'es_is_dirty': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'es_updated_at': ('django.db.models.fields.DateTimeField', [], {'null': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_aop': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_visible': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'issn_epub': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'issn_ppub': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'issue': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'articles'\", 'null': 'True', 'to': \"orm['journalmanager.Issue']\"}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'articles'\", 'null': 'True', 'to': \"orm['journalmanager.Journal']\"}),\n 'journal_title': ('django.db.models.fields.CharField', [], {'max_length': '512', 'db_index': 'True'}),\n 'related_articles': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'to': \"orm['journalmanager.Article']\", 'null': 'True', 'through': \"orm['journalmanager.ArticlesLinkage']\", 'blank': 'True'}),\n 'updated_at': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now', 'auto_now': 'True', 'blank': 'True'}),\n 'xml': ('scielomanager.custom_fields.XMLSPSField', [], {}),\n 'xml_version': ('django.db.models.fields.CharField', [], {'max_length': '9'})\n },\n 'journalmanager.articleslinkage': {\n 'Meta': {'object_name': 'ArticlesLinkage'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'link_to': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'referrers'\", 'to': \"orm['journalmanager.Article']\"}),\n 'link_type': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'referrer': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'links_to'\", 'to': \"orm['journalmanager.Article']\"})\n },\n 'journalmanager.collection': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Collection'},\n 'acronym': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '16', 'blank': 'True'}),\n 'address': ('django.db.models.fields.TextField', [], {}),\n 'address_complement': ('django.db.models.fields.CharField', [], {'max_length': '128', 'blank': 'True'}),\n 'address_number': ('django.db.models.fields.CharField', [], {'max_length': '8'}),\n 'city': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'collection': ('django.db.models.fields.related.ManyToManyField', [], {'related_name': \"'user_collection'\", 'to': \"orm['auth.User']\", 'through': \"orm['journalmanager.UserCollections']\", 'blank': 'True', 'symmetrical': 'False', 'null': 'True'}),\n 'country': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75'}),\n 'fax': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'logo': ('django.db.models.fields.files.ImageField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '128', 'db_index': 'True'}),\n 'name_slug': ('django.db.models.fields.SlugField', [], {'max_length': '50', 'unique': 'True', 'null': 'True', 'blank': 'True'}),\n 'phone': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'state': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'url': ('django.db.models.fields.URLField', [], {'max_length': '200'}),\n 'zip_code': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.institution': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Institution'},\n 'acronym': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '16', 'blank': 'True'}),\n 'address': ('django.db.models.fields.TextField', [], {}),\n 'address_complement': ('django.db.models.fields.CharField', [], {'max_length': '128', 'blank': 'True'}),\n 'address_number': ('django.db.models.fields.CharField', [], {'max_length': '8'}),\n 'cel': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'city': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'complement': ('django.db.models.fields.TextField', [], {'default': \"''\", 'blank': 'True'}),\n 'country': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75'}),\n 'fax': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),\n 'phone': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'state': ('django.db.models.fields.CharField', [], {'max_length': '32', 'blank': 'True'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'zip_code': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.issue': {\n 'Meta': {'ordering': \"('created', 'id')\", 'object_name': 'Issue'},\n 'cover': ('django.db.models.fields.files.ImageField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'ctrl_vocabulary': ('django.db.models.fields.CharField', [], {'max_length': '64', 'blank': 'True'}),\n 'editorial_standard': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_marked_up': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Journal']\"}),\n 'label': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '64', 'null': 'True', 'blank': 'True'}),\n 'number': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'order': ('django.db.models.fields.IntegerField', [], {'blank': 'True'}),\n 'publication_end_month': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),\n 'publication_start_month': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),\n 'publication_year': ('django.db.models.fields.IntegerField', [], {}),\n 'section': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Section']\", 'symmetrical': 'False', 'blank': 'True'}),\n 'spe_text': ('django.db.models.fields.CharField', [], {'max_length': '15', 'null': 'True', 'blank': 'True'}),\n 'suppl_text': ('django.db.models.fields.CharField', [], {'max_length': '15', 'null': 'True', 'blank': 'True'}),\n 'total_documents': ('django.db.models.fields.IntegerField', [], {'default': '0'}),\n 'type': ('django.db.models.fields.CharField', [], {'default': \"'regular'\", 'max_length': '15'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'use_license': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.UseLicense']\", 'null': 'True'}),\n 'volume': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'})\n },\n 'journalmanager.issuetitle': {\n 'Meta': {'object_name': 'IssueTitle'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'issue': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Issue']\"}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '256'})\n },\n 'journalmanager.journal': {\n 'Meta': {'ordering': \"('title', 'id')\", 'object_name': 'Journal'},\n 'abstract_keyword_languages': ('django.db.models.fields.related.ManyToManyField', [], {'related_name': \"'abstract_keyword_languages'\", 'symmetrical': 'False', 'to': \"orm['journalmanager.Language']\"}),\n 'acronym': ('django.db.models.fields.CharField', [], {'max_length': '16'}),\n 'ccn_code': ('django.db.models.fields.CharField', [], {'default': \"''\", 'max_length': '64', 'blank': 'True'}),\n 'collections': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Collection']\", 'through': \"orm['journalmanager.Membership']\", 'symmetrical': 'False'}),\n 'copyrighter': ('django.db.models.fields.CharField', [], {'max_length': '254'}),\n 'cover': ('scielomanager.custom_fields.ContentTypeRestrictedFileField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'creator': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'enjoy_creator'\", 'to': \"orm['auth.User']\"}),\n 'ctrl_vocabulary': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'current_ahead_documents': ('django.db.models.fields.IntegerField', [], {'default': '0', 'max_length': '3', 'null': 'True', 'blank': 'True'}),\n 'editor': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'editor_journal'\", 'null': 'True', 'to': \"orm['auth.User']\"}),\n 'editor_address': ('django.db.models.fields.CharField', [], {'max_length': '512'}),\n 'editor_address_city': ('django.db.models.fields.CharField', [], {'max_length': '256'}),\n 'editor_address_country': ('scielo_extensions.modelfields.CountryField', [], {'max_length': '2'}),\n 'editor_address_state': ('django.db.models.fields.CharField', [], {'max_length': '128'}),\n 'editor_address_zip': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'editor_email': ('django.db.models.fields.EmailField', [], {'max_length': '75'}),\n 'editor_name': ('django.db.models.fields.CharField', [], {'max_length': '512'}),\n 'editor_phone1': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'editor_phone2': ('django.db.models.fields.CharField', [], {'max_length': '32', 'null': 'True', 'blank': 'True'}),\n 'editorial_standard': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'eletronic_issn': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'final_num': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'final_vol': ('django.db.models.fields.CharField', [], {'max_length': '16', 'blank': 'True'}),\n 'final_year': ('django.db.models.fields.CharField', [], {'max_length': '4', 'null': 'True', 'blank': 'True'}),\n 'frequency': ('django.db.models.fields.CharField', [], {'max_length': '16'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'index_coverage': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),\n 'init_num': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'}),\n 'init_vol': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'}),\n 'init_year': ('django.db.models.fields.CharField', [], {'max_length': '4'}),\n 'is_indexed_aehci': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_indexed_scie': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_indexed_ssci': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'languages': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Language']\", 'symmetrical': 'False'}),\n 'logo': ('scielomanager.custom_fields.ContentTypeRestrictedFileField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),\n 'medline_code': ('django.db.models.fields.CharField', [], {'max_length': '64', 'null': 'True', 'blank': 'True'}),\n 'medline_title': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),\n 'notes': ('django.db.models.fields.TextField', [], {'max_length': '254', 'null': 'True', 'blank': 'True'}),\n 'other_previous_title': ('django.db.models.fields.CharField', [], {'max_length': '255', 'blank': 'True'}),\n 'previous_ahead_documents': ('django.db.models.fields.IntegerField', [], {'default': '0', 'max_length': '3', 'null': 'True', 'blank': 'True'}),\n 'previous_title': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': \"'prev_title'\", 'null': 'True', 'to': \"orm['journalmanager.Journal']\"}),\n 'print_issn': ('django.db.models.fields.CharField', [], {'max_length': '9', 'db_index': 'True'}),\n 'pub_level': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'publication_city': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'publisher_country': ('scielo_extensions.modelfields.CountryField', [], {'max_length': '2'}),\n 'publisher_name': ('django.db.models.fields.CharField', [], {'max_length': '256'}),\n 'publisher_state': ('django.db.models.fields.CharField', [], {'max_length': '64'}),\n 'scielo_issn': ('django.db.models.fields.CharField', [], {'max_length': '16'}),\n 'secs_code': ('django.db.models.fields.CharField', [], {'max_length': '64', 'blank': 'True'}),\n 'short_title': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'db_index': 'True'}),\n 'sponsor': ('django.db.models.fields.related.ManyToManyField', [], {'blank': 'True', 'related_name': \"'journal_sponsor'\", 'null': 'True', 'symmetrical': 'False', 'to': \"orm['journalmanager.Sponsor']\"}),\n 'study_areas': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': \"'journals_migration_tmp'\", 'null': 'True', 'to': \"orm['journalmanager.StudyArea']\"}),\n 'subject_categories': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': \"'journals'\", 'null': 'True', 'to': \"orm['journalmanager.SubjectCategory']\"}),\n 'subject_descriptors': ('django.db.models.fields.CharField', [], {'max_length': '1024'}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),\n 'title_iso': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),\n 'twitter_user': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'url_journal': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'url_online_submission': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'use_license': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.UseLicense']\"})\n },\n 'journalmanager.journalmission': {\n 'Meta': {'object_name': 'JournalMission'},\n 'description': ('django.db.models.fields.TextField', [], {}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'missions'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\", 'null': 'True'})\n },\n 'journalmanager.journaltimeline': {\n 'Meta': {'object_name': 'JournalTimeline'},\n 'collection': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Collection']\"}),\n 'created_by': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['auth.User']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'statuses'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'reason': ('django.db.models.fields.TextField', [], {'default': \"''\"}),\n 'since': ('django.db.models.fields.DateTimeField', [], {}),\n 'status': ('django.db.models.fields.CharField', [], {'max_length': '16'})\n },\n 'journalmanager.journaltitle': {\n 'Meta': {'object_name': 'JournalTitle'},\n 'category': ('django.db.models.fields.CharField', [], {'max_length': '128'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'other_titles'\", 'to': \"orm['journalmanager.Journal']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '128'})\n },\n 'journalmanager.language': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Language'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'iso_code': ('django.db.models.fields.CharField', [], {'max_length': '2'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '64'})\n },\n 'journalmanager.membership': {\n 'Meta': {'unique_together': \"(('journal', 'collection'),)\", 'object_name': 'Membership'},\n 'collection': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Collection']\"}),\n 'created_by': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['auth.User']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Journal']\"}),\n 'reason': ('django.db.models.fields.TextField', [], {'default': \"''\", 'blank': 'True'}),\n 'since': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'status': ('django.db.models.fields.CharField', [], {'default': \"'inprogress'\", 'max_length': '16'})\n },\n 'journalmanager.pendedform': {\n 'Meta': {'object_name': 'PendedForm'},\n 'created_at': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'}),\n 'form_hash': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'user': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'pending_forms'\", 'to': \"orm['auth.User']\"}),\n 'view_name': ('django.db.models.fields.CharField', [], {'max_length': '128'})\n },\n 'journalmanager.pendedvalue': {\n 'Meta': {'object_name': 'PendedValue'},\n 'form': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'data'\", 'to': \"orm['journalmanager.PendedForm']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'name': ('django.db.models.fields.CharField', [], {'max_length': '255'}),\n 'value': ('django.db.models.fields.TextField', [], {})\n },\n 'journalmanager.pressrelease': {\n 'Meta': {'object_name': 'PressRelease'},\n 'doi': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'})\n },\n 'journalmanager.pressreleasearticle': {\n 'Meta': {'object_name': 'PressReleaseArticle'},\n 'article_pid': ('django.db.models.fields.CharField', [], {'max_length': '32', 'db_index': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'press_release': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'articles'\", 'to': \"orm['journalmanager.PressRelease']\"})\n },\n 'journalmanager.pressreleasetranslation': {\n 'Meta': {'object_name': 'PressReleaseTranslation'},\n 'content': ('django.db.models.fields.TextField', [], {}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\"}),\n 'press_release': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'translations'\", 'to': \"orm['journalmanager.PressRelease']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '128'})\n },\n 'journalmanager.regularpressrelease': {\n 'Meta': {'object_name': 'RegularPressRelease', '_ormbases': ['journalmanager.PressRelease']},\n 'issue': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'press_releases'\", 'to': \"orm['journalmanager.Issue']\"}),\n 'pressrelease_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['journalmanager.PressRelease']\", 'unique': 'True', 'primary_key': 'True'})\n },\n 'journalmanager.section': {\n 'Meta': {'ordering': \"('id',)\", 'object_name': 'Section'},\n 'code': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '21', 'blank': 'True'}),\n 'created': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_trashed': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'journal': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Journal']\"}),\n 'legacy_code': ('django.db.models.fields.CharField', [], {'max_length': '16', 'null': 'True', 'blank': 'True'}),\n 'updated': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'})\n },\n 'journalmanager.sectiontitle': {\n 'Meta': {'ordering': \"['title']\", 'object_name': 'SectionTitle'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Language']\"}),\n 'section': ('django.db.models.fields.related.ForeignKey', [], {'related_name': \"'titles'\", 'to': \"orm['journalmanager.Section']\"}),\n 'title': ('django.db.models.fields.CharField', [], {'max_length': '256'})\n },\n 'journalmanager.sponsor': {\n 'Meta': {'ordering': \"['name']\", 'object_name': 'Sponsor', '_ormbases': ['journalmanager.Institution']},\n 'collections': ('django.db.models.fields.related.ManyToManyField', [], {'to': \"orm['journalmanager.Collection']\", 'symmetrical': 'False'}),\n 'institution_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['journalmanager.Institution']\", 'unique': 'True', 'primary_key': 'True'})\n },\n 'journalmanager.studyarea': {\n 'Meta': {'object_name': 'StudyArea'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'study_area': ('django.db.models.fields.CharField', [], {'max_length': '256'})\n },\n 'journalmanager.subjectcategory': {\n 'Meta': {'object_name': 'SubjectCategory'},\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'term': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'})\n },\n 'journalmanager.translateddata': {\n 'Meta': {'object_name': 'TranslatedData'},\n 'field': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'language': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'model': ('django.db.models.fields.CharField', [], {'max_length': '32'}),\n 'translation': ('django.db.models.fields.CharField', [], {'max_length': '512', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.uselicense': {\n 'Meta': {'ordering': \"['license_code']\", 'object_name': 'UseLicense'},\n 'disclaimer': ('django.db.models.fields.TextField', [], {'max_length': '512', 'null': 'True', 'blank': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_default': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'license_code': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '64'}),\n 'reference_url': ('django.db.models.fields.URLField', [], {'max_length': '200', 'null': 'True', 'blank': 'True'})\n },\n 'journalmanager.usercollections': {\n 'Meta': {'unique_together': \"(('user', 'collection'),)\", 'object_name': 'UserCollections'},\n 'collection': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['journalmanager.Collection']\"}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'is_default': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'is_manager': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'user': ('django.db.models.fields.related.ForeignKey', [], {'to': \"orm['auth.User']\"})\n },\n 'journalmanager.userprofile': {\n 'Meta': {'object_name': 'UserProfile'},\n 'email_notifications': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),\n 'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'tz': ('django.db.models.fields.CharField', [], {'default': \"'America/Sao_Paulo'\", 'max_length': '150'}),\n 'user': ('django.db.models.fields.related.OneToOneField', [], {'to': \"orm['auth.User']\", 'unique': 'True'})\n }\n }\n\n complete_apps = ['journalmanager']\n symmetrical = True", "metadata": "root.Migration", "header": "['module', '___EOS___']", "index": 6 }, { "content": " def forwards(self, orm):\n \"Write your forwards methods here.\"\n # Note: Don't use \"from appname.models import ModelName\".\n # Use orm.ModelName to refer to models in this application,\n # and orm['appname.ModelName'] for models in other applications.\n orm.Journal.objects.filter(init_vol=None).update(init_vol='')", "metadata": "root.Migration.forwards", "header": "['class', 'Migration', '(', 'DataMigration', ')', ':', '___EOS___']", "index": 8 }, { "content": " def backwards(self, orm):\n \"Write your backwards methods here.\"\n orm.Journal.objects.filter(init_vol='').update(init_vol=None)", "metadata": "root.Migration.backwards", "header": "['class', 'Migration', '(', 'DataMigration', ')', ':', '___EOS___']", "index": 15 } ]

[ { "span": "from south.utils import datetime_utils as datetime", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 50 }, { "span": "from south.db import db", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 23 }, { "span": "from django.db import models", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 28 } ]

[]

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Unused import

lsaffre/lino/lino/test_apps/properties/models.py

[ { "content": "\"\"\"\nModule `lino_xl.lib.properties`\n-------------------------------\n\nImagine that we are doing a study about alimentary habits. We observe a \ndefined series of properties on the people who participate in our study.\nHere are the properties that we are going to observe::\n\n\n >>> weight = properties.INT.create_property(name='weight')\n >>> weight.save()\n \n >>> married = properties.BOOL.create_property(name='married')\n >>> married.save()\n \n >>> favdish = properties.CHAR.create_property(name='favdish',label='favorite dish')\n >>> favdish.save()\n >>> favdish.create_value(\"Cookies\").save()\n >>> v = favdish.create_value(\"Fish\").save()\n >>> favdish.create_value(\"Meat\").save()\n >>> favdish.create_value(\"Vegetables\").save()\n\n \nNow we have setup the properties. Let's have a look at this metadata::\n \n >>> print favdish.choices_list()\n [u'Cookies', u'Fish', u'Meat', u'Vegetables']\n >>> qs = properties.Property.objects.all()\n >>> [\"%s (%s)\" % (p.name,','.join(map(unicode,p.choices_list()))) for p in qs]\n [u'weight ()', u'married (True,False)', u'favdish (Cookies,Fish,Meat,Vegetables)']\n \nPropValuesByOwner is a report that cannot be rendered into a normal grid because the 'value' column has variable data type, but it's render_to_dict() method is used to fill an `Ext.grid.PropertyGrid`:\n\n >>> properties.PropValuesByOwner().request(master=Person).render_to_dict()\n {'count': 3, 'rows': [{'name': u'favdish', 'value': ''}, {'name': u'married', 'value': None}, {'name': u'weight', 'value': None}], 'title': u'Properties for persons'}\n \n \nHere are the people we are going to analyze::\n\n >>> chris = Person(name='Chris')\n >>> chris.save()\n >>> fred = Person(name='Fred')\n >>> fred.save()\n >>> vera = Person(name='Vera')\n >>> vera.save()\n >>> mary = Person(name='Mary')\n >>> mary.save()\n \nNow we are ready to fill in some real data. Chris, Fred and Vera \nanswered together to each question. First we asked them \"What's \nyour weight?\", and they answered:\n \n >>> weight.set_value_for(chris,70)\n >>> weight.set_value_for(fred,110)\n >>> weight.set_value_for(vera,60)\n \nWhen asked whether they were married, they answered:\n \n >>> married.set_value_for(chris,True)\n >>> married.set_value_for(fred,False)\n >>> married.set_value_for(vera,True)\n\nAnd about their favourite dish they answered:\n \n >>> favdish.set_value_for(chris,'Cookies')\n >>> favdish.set_value_for(fred,'Fish')\n >>> favdish.set_value_for(vera,'Vegetables')\n\nMary came later. She answered all questions at once, which we can enter \nin one line of code:\n \n >>> properties.set_value_for(mary,married=True,favdish='Meat')\n \nNote that Mary didn't know her weight.\n\nTo see the property values of a person, we can use a manual query...\n\n >>> qs = properties.PropValue.objects.filter(owner_id=fred.pk).order_by('prop__name')\n >>> [v.by_owner() for v in qs]\n [u'favdish: Fish', u'married: False', u'weight: 110']\n \n... or use the `PropValuesByOwner` report:\n\n >>> properties.PropValuesByOwner().request(master_instance=fred).render_to_dict()\n {'count': 3, 'rows': [{'name': u'favdish', 'value': u'Fish'}, {'name': u'married', 'value': False}, {'name': u'weight', 'value': 110}], 'title': u'Properties for Fred'}\n \nNote how properties.PropValuesByOwner also returns 3 rows for Mary although we don't know her weight:\n \n >>> properties.PropValuesByOwner().request(master_instance=mary).render_to_dict()\n {'count': 3, 'rows': [{'name': u'favdish', 'value': u'Meat'}, {'name': u'married', 'value': True}, {'name': u'weight', 'value': None}], 'title': u'Properties for Mary'}\n \nQuery by property:\n\n >>> qs = properties.PropValue.objects.filter(prop=weight) \n >>> [v.by_property() for v in qs]\n [u'Chris: 70', u'Fred: 110', u'Vera: 60']\n \n >>> qs = weight.values_query().order_by('value')\n >>> [v.by_property() for v in qs]\n [u'Vera: 60', u'Chris: 70', u'Fred: 110']\n \n \n`Report.as_text()`, is currently broken:\n\n >>> #properties.PropValuesByOwner().as_text(fred)\n\n\n\"\"\"\n\n\nfrom django.db import models\nfrom django.contrib.contenttypes.models import ContentType\nfrom django.contrib.contenttypes import generic\nfrom lino_xl.lib.properties import models as properties\nfrom django.utils.encoding import python_2_unicode_compatible\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "@python_2_unicode_compatible\nclass Person(models.Model):\n name = models.CharField(max_length=20)\n properties = generic.GenericRelation(properties.Property)\n", "metadata": "root.Person", "header": "['module', '___EOS___']", "index": 117 }, { "content": " def __str__(self):\n return self.name", "metadata": "root.Person.__str__", "header": "['class', 'Person', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 122 } ]

[ { "span": "from django.contrib.contenttypes.models import ContentType", "start_line": 111, "start_column": 0, "end_line": 111, "end_column": 58 } ]

[]

1

false

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Unused import

brosner/django-wikiapp/wiki/feeds.py

[ { "content": "from django.contrib.syndication.feeds import Feed, FeedDoesNotExist\nfrom django.utils.feedgenerator import Atom1Feed\nfrom django.contrib.contenttypes.models import ContentType\nfrom django.core.exceptions import ObjectDoesNotExist\nfrom django.core.urlresolvers import reverse\nfrom django.utils.translation import ugettext_lazy as _\nfrom django.http import Http404\nfrom django.shortcuts import get_object_or_404, render_to_response\nfrom django.template import Context, Template\nfrom django.template.loader import get_template\nfrom wiki.models import ChangeSet, Article\nfrom wiki.utils import get_ct\nimport atomformat as atom\n\nALL_ARTICLES = Article.objects.all()\nALL_CHANGES = ChangeSet.objects.all()\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class RssHistoryFeed(Feed):\n\n title = 'History for all articles'\n link = '/wiki/'\n description = 'Recent changes in wiki'\n\n\n ", "metadata": "root.RssHistoryFeed", "header": "['module', '___EOS___']", "index": 17 }, { "content": " def __init__(self, request,\n group_slug=None, bridge=None,\n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES, \n extra_context=None, \n title_template = u'feeds/history_title.html', \n description_template = u'feeds/history_description.html', \n *args, **kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.changes_qs = changes_qs.filter(article__content_type=get_ct(group), \n article__object_id=group.id)\n else:\n self.changes_qs = changes_qs\n\n self.title_template = title_template\n self.description_template = description_template\n super(RssHistoryFeed, self).__init__('', request)", "metadata": "root.RssHistoryFeed.__init__", "header": "['class', 'RssHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 23 }, { "content": " def items(self):\n return self.changes_qs.order_by('-modified')[:30]", "metadata": "root.RssHistoryFeed.items", "header": "['class', 'RssHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 45 }, { "content": " def item_pubdate(self, item):\n \"\"\"\n Return the item's pubdate. It's this modified date\n \"\"\"\n return item.modified", "metadata": "root.RssHistoryFeed.item_pubdate", "header": "['class', 'RssHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 48 }, { "content": "class AtomHistoryFeed(atom.Feed):\n\n feed_title = 'History for all articles'\n feed_subtitle = 'Recent changes in wiki'\n\n\n\n\n\n\n\n\n", "metadata": "root.AtomHistoryFeed", "header": "['module', '___EOS___']", "index": 55 }, { "content": " def __init__(self, request,\n group_slug=None, bridge=None, \n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES, \n extra_context=None, \n title_template = u'feeds/history_title.html', \n description_template = u'feeds/history_description.html', \n *args, **kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.changes_qs = changes_qs.filter(article__content_type=get_ct(group), \n article__object_id=group.id)\n else:\n self.changes_qs = changes_qs\n\n self.title_template = get_template(title_template)\n self.description_template = get_template(description_template)\n super(AtomHistoryFeed, self).__init__('', request)", "metadata": "root.AtomHistoryFeed.__init__", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 60 }, { "content": " def feed_id(self):\n return \"feed_id\"", "metadata": "root.AtomHistoryFeed.feed_id", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 82 }, { "content": " def items(self):\n return self.changes_qs.order_by('-modified')[:30]", "metadata": "root.AtomHistoryFeed.items", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 85 }, { "content": " def item_id(self, item):\n return \"%s\" % item.id", "metadata": "root.AtomHistoryFeed.item_id", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 88 }, { "content": " def item_title(self, item):\n c = Context({'obj' : item})\n return self.title_template.render(c)", "metadata": "root.AtomHistoryFeed.item_title", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 91 }, { "content": " def item_updated(self, item):\n return item.modified", "metadata": "root.AtomHistoryFeed.item_updated", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 95 }, { "content": " def item_authors(self, item):\n if item.is_anonymous_change():\n return [{'name' : _('Anonimous')},]\n return [{'name' : item.editor.username},]", "metadata": "root.AtomHistoryFeed.item_authors", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 98 }, { "content": " def item_links(self, item):\n return [{'href': item.get_absolute_url()}, ]", "metadata": "root.AtomHistoryFeed.item_links", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 103 }, { "content": " def item_content(self, item):\n c = Context({'obj' : item,})\n return ({'type': 'html'}, self.description_template.render(c))", "metadata": "root.AtomHistoryFeed.item_content", "header": "['class', 'AtomHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 106 }, { "content": "class RssArticleHistoryFeed(Feed):\n\n\n\n\n\n\n", "metadata": "root.RssArticleHistoryFeed", "header": "['module', '___EOS___']", "index": 111 }, { "content": " def __init__(self, title, request, \n group_slug=None, bridge=None,\n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES,\n extra_context=None,\n title_template = u'feeds/history_title.html',\n description_template = u'feeds/history_description.html',\n *args, **kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.article_qs = article_qs.filter(content_type=get_ct(group),\n object_id=group.id)\n else:\n self.article_qs = article_qs\n\n self.title_template = title_template\n self.description_template = description_template\n super(RssArticleHistoryFeed, self).__init__(title, request)", "metadata": "root.RssArticleHistoryFeed.__init__", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 113 }, { "content": " def get_object(self, bits):\n return self.article_qs.get(title = bits[0])", "metadata": "root.RssArticleHistoryFeed.get_object", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 135 }, { "content": " def title(self, obj):\n return \"History for: %s \" % obj.title", "metadata": "root.RssArticleHistoryFeed.title", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 138 }, { "content": " def link(self, obj):\n if not obj:\n raise FeedDoesNotExist\n return obj.get_absolute_url()", "metadata": "root.RssArticleHistoryFeed.link", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 141 }, { "content": " def description(self, obj):\n return \"Recent changes in %s\" % obj.title", "metadata": "root.RssArticleHistoryFeed.description", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 146 }, { "content": " def items(self, obj):\n return ChangeSet.objects.filter(article__id__exact=obj.id).order_by('-modified')[:30]", "metadata": "root.RssArticleHistoryFeed.items", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 149 }, { "content": " def item_pubdate(self, item):\n \"\"\"\n Returns the modified date\n \"\"\"\n return item.modified", "metadata": "root.RssArticleHistoryFeed.item_pubdate", "header": "['class', 'RssArticleHistoryFeed', '(', 'Feed', ')', ':', '___EOS___']", "index": 152 }, { "content": "class AtomArticleHistoryFeed(atom.Feed):\n \n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.AtomArticleHistoryFeed", "header": "['module', '___EOS___']", "index": 159 }, { "content": " def __init__(self, title, request, \n group_slug=None, bridge=None,\n article_qs=ALL_ARTICLES, changes_qs=ALL_CHANGES,\n extra_context=None,\n title_template = u'feeds/history_title.html',\n description_template = u'feeds/history_description.html',\n *args, **kw):\n\n if group_slug is not None:\n try:\n group = bridge.get_group(group_slug)\n except ObjectDoesNotExist:\n raise Http404\n self.article_qs = article_qs.filter(content_type=get_ct(group),\n object_id=group.id)\n else:\n self.article_qs = article_qs\n\n self.title_template = get_template(title_template)\n self.description_template = get_template(description_template)\n super(AtomArticleHistoryFeed, self).__init__('', request)", "metadata": "root.AtomArticleHistoryFeed.__init__", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 161 }, { "content": " def get_object(self, bits):\n return self.article_qs.get(title = bits[0])", "metadata": "root.AtomArticleHistoryFeed.get_object", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 183 }, { "content": " def feed_title(self, obj):\n return \"History for: %s \" % obj.title", "metadata": "root.AtomArticleHistoryFeed.feed_title", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 186 }, { "content": " def feed_subtitle(self, obj):\n return \"Recent changes in %s\" % obj.title", "metadata": "root.AtomArticleHistoryFeed.feed_subtitle", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 189 }, { "content": " def feed_id(self):\n return \"feed_id\"", "metadata": "root.AtomArticleHistoryFeed.feed_id", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 192 }, { "content": " def items(self, obj):\n return ChangeSet.objects.filter(article__id__exact=obj.id).order_by('-modified')[:30]", "metadata": "root.AtomArticleHistoryFeed.items", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 195 }, { "content": " def item_id(self, item):\n return \"%s\" % item.id", "metadata": "root.AtomArticleHistoryFeed.item_id", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 198 }, { "content": " def item_title(self, item):\n c = Context({'obj' : item})\n return self.title_template.render(c)", "metadata": "root.AtomArticleHistoryFeed.item_title", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 201 }, { "content": " def item_updated(self, item):\n return item.modified", "metadata": "root.AtomArticleHistoryFeed.item_updated", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 205 }, { "content": " def item_authors(self, item):\n if item.is_anonymous_change():\n return [{'name' : _('Anonimous')},]\n return [{'name' : item.editor.username},]", "metadata": "root.AtomArticleHistoryFeed.item_authors", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 208 }, { "content": " def item_links(self, item):\n return [{'href': item.get_absolute_url()},]", "metadata": "root.AtomArticleHistoryFeed.item_links", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 213 }, { "content": " def item_content(self, item):\n c = Context({'obj' : item, })\n return ({'type': 'html'}, self.description_template.render(c))", "metadata": "root.AtomArticleHistoryFeed.item_content", "header": "['class', 'AtomArticleHistoryFeed', '(', 'atom', '.', 'Feed', ')', ':', '___EOS___']", "index": 216 } ]

[ { "span": "from django.utils.feedgenerator import Atom1Feed", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 48 }, { "span": "from django.contrib.contenttypes.models import ContentType", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 58 }, { "span": "from django.core.urlresolvers import reverse", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 44 }, { "span": "from django.shortcuts import get_object_or_404, render_to_response", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 66 }, { "span": "from django.template import Context, Template", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 45 } ]

[]

1

false

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2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

Testing equality to None

OpenBCI/OpenBCI_Python/user.py

[ { "content": "#!/usr/bin/env python2.7\nimport argparse # new in Python2.7\nimport os\nimport time\nimport string\nimport atexit\nimport threading\nimport logging\nimport sys\n\nfrom yapsy.PluginManager import PluginManager\n\n# Load the plugins from the plugin directory.\nmanager = PluginManager()\nmanager.setPluginPlaces([\"plugins\"])\nmanager.collectPlugins()\n\nif __name__ == '__main__':\n\n print (\" USER.py\")\n parser = argparse.ArgumentParser(description=\"OpenBCI 'user'\")\n parser.add_argument('--board', default=3, type=int)\n parser.add_argument('-l', '--list', action='store_true',\n help=\"List available plugins.\")\n parser.add_argument('-i', '--info', metavar='PLUGIN',\n help=\"Show more information about a plugin.\")\n parser.add_argument('-p', '--port',\n help=\"Port to connect to OpenBCI Dongle \" +\n \"( ex /dev/ttyUSB0 or /dev/tty.usbserial-* )\")\n # baud rate is not currently used\n parser.add_argument('-b', '--baud', default=115200, type=int,\n help=\"Baud rate (not currently used)\")\n parser.add_argument('--no-filtering', dest='filtering',\n action='store_false',\n help=\"Disable notch filtering\")\n parser.set_defaults(filtering=True)\n parser.add_argument('-d', '--daisy', dest='daisy',\n action='store_true',\n help=\"Force daisy mode (beta feature)\")\n # first argument: plugin name, then parameters for plugin\n parser.add_argument('-a', '--add', metavar=('PLUGIN', 'PARAM'),\n action='append', nargs='+',\n help=\"Select which plugins to activate and set parameters.\")\n parser.add_argument('--log', dest='log', action='store_true',\n help=\"Log program\")\n parser.set_defaults(daisy=False, log=False)\n\n args = parser.parse_args()\n\n if not (args.port or args.list or args.info):\n parser.error('No action requested. Use `--port serial_port` to connect to the bord; `--list` to show available plugins or `--info [plugin_name]` to get more information.')\n\n if args.board == 3:\n print (\"user.py: open_bci_v3...\")\n import open_bci_v3 as bci\n elif args.board == 4:\n print (\"user.py: open_bci_v_ganglion...\")\n import open_bci_v_ganglion as bci\n else:\n warn('Board type not recognized')\n\n # Print list of available plugins and exit\n if args.list:\n print (\"Available plugins:\")\n for plugin in manager.getAllPlugins():\n print (\"\\t-\", plugin.name)\n exit()\n\n # User wants more info about a plugin...\n if args.info:\n plugin = manager.getPluginByName(args.info)\n if plugin == None:\n # eg: if an import fail inside a plugin, yapsy skip it\n print (\"Error: [\", args.info, \"] not found or could not be loaded. Check name and requirements.\")\n else:\n print (plugin.description)\n plugin.plugin_object.show_help()\n exit()\n\n print (\"\\n------------SETTINGS-------------\")\n print (\"Notch filtering:\", args.filtering)\n\n # Logging\n if args.log:\n print (\"Logging Enabled: \" + str(args.log))\n logging.basicConfig(filename=\"OBCI.log\", format='%(asctime)s - %(levelname)s : %(message)s', level=logging.DEBUG)\n logging.getLogger('yapsy').setLevel(logging.DEBUG)\n logging.info('---------LOG START-------------')\n logging.info(args)\n else:\n print (\"user.py: Logging Disabled.\")\n\n print (\"\\n-------INSTANTIATING BOARD-------\")\n board = bci.OpenBCIBoard(port=args.port,\n daisy=args.daisy,\n filter_data=args.filtering,\n scaled_output=True,\n log=args.log)\n\n # Info about effective number of channels and sampling rate\n if board.daisy:\n print (\"Force daisy mode:\")\n else:\n print (\"No daisy:\")\n print (board.getNbEEGChannels(), \"EEG channels and\", board.getNbAUXChannels(), \"AUX channels at\", board.getSampleRate(), \"Hz.\")\n\n print (\"\\n------------PLUGINS--------------\")\n # Loop round the plugins and print their names.\n print (\"Found plugins:\")\n for plugin in manager.getAllPlugins():\n print (\"[\", plugin.name, \"]\")\n print()\n\n\n # Fetch plugins, try to activate them, add to the list if OK\n plug_list = []\n callback_list = []\n if args.add:\n for plug_candidate in args.add:\n # first value: plugin name, then optional arguments\n plug_name = plug_candidate[0]\n plug_args = plug_candidate[1:]\n # Try to find name\n plug = manager.getPluginByName(plug_name)\n if plug == None:\n # eg: if an import fail inside a plugin, yapsy skip it\n print (\"Error: [\", plug_name, \"] not found or could not be loaded. Check name and requirements.\")\n else:\n print (\"\\nActivating [\", plug_name, \"] plugin...\")\n if not plug.plugin_object.pre_activate(plug_args, sample_rate=board.getSampleRate(), eeg_channels=board.getNbEEGChannels(), aux_channels=board.getNbAUXChannels()):\n print (\"Error while activating [\", plug_name, \"], check output for more info.\")\n else:\n print (\"Plugin [\", plug_name, \"] added to the list\")\n plug_list.append(plug.plugin_object)\n callback_list.append(plug.plugin_object)\n\n if len(plug_list) == 0:\n print (\"WARNING: no plugin selected, you will only be able to communicate with the board.\")\n fun = None\n else:\n fun = callback_list\n\n\n atexit.register(cleanUp)\n\n print (\"--------------INFO---------------\")\n print (\"User serial interface enabled...\\n\\\nView command map at http://docs.openbci.com.\\n\\\nType /start to run -- and /stop before issuing new commands afterwards.\\n\\\nType /exit to exit. \\n\\\nBoard outputs are automatically printed as: \\n\\\n% <tab> message\\n\\\n$$$ signals end of message\")\n\n print(\"\\n-------------BEGIN---------------\")\n # Init board state\n # s: stop board streaming; v: soft reset of the 32-bit board (no effect with 8bit board)\n s = 'sv'\n # Tell the board to enable or not daisy module\n if board.daisy:\n s = s + 'C'\n else:\n s = s + 'c'\n # d: Channels settings back to default\n s = s + 'd'\n\n while(s != \"/exit\"):\n # Send char and wait for registers to set\n if (not s):\n pass\n elif(\"help\" in s):\n print (\"View command map at: \\\nhttp://docs.openbci.com/software/01-OpenBCI_SDK.\\n\\\nFor user interface: read README or view \\\nhttps://github.com/OpenBCI/OpenBCI_Python\")\n\n elif board.streaming and s != \"/stop\":\n print (\"Error: the board is currently streaming data, please type '/stop' before issuing new commands.\")\n else:\n # read silently incoming packet if set (used when stream is stopped)\n flush = False\n\n if('/' == s[0]):\n s = s[1:]\n rec = False # current command is recognized or fot\n\n if(\"T:\" in s):\n lapse = int(s[string.find(s, \"T:\")+2:])\n rec = True\n elif(\"t:\" in s):\n lapse = int(s[string.find(s, \"t:\")+2:])\n rec = True\n else:\n lapse = -1\n\n if(\"start\" in s):\n if(fun != None):\n # start streaming in a separate thread so we could always send commands in here\n boardThread = threading.Thread(target=board.start_streaming, args=(fun, lapse))\n boardThread.daemon = True # will stop on exit\n try:\n boardThread.start()\n except:\n raise\n else:\n print (\"No function loaded\")\n rec = True\n elif('test' in s):\n test = int(s[s.find(\"test\")+4:])\n board.test_signal(test)\n rec = True\n elif('stop' in s):\n board.stop()\n rec = True\n flush = True\n if rec == False:\n print(\"Command not recognized...\")\n\n elif s:\n for c in s:\n if sys.hexversion > 0x03000000:\n board.ser.write(bytes(c, 'utf-8'))\n else:\n board.ser.write(bytes(c))\n time.sleep(0.100)\n\n line = ''\n time.sleep(0.1) #Wait to see if the board has anything to report\n while board.ser.inWaiting():\n c = board.ser.read().decode('utf-8')\n line += c\n time.sleep(0.001)\n if (c == '\\n') and not flush:\n print('%\\t'+line[:-1])\n line = ''\n\n if not flush:\n print(line)\n\n # Take user input\n #s = input('--> ')\n if sys.hexversion > 0x03000000:\n s = input('--> ')\n else:\n s = raw_input('--> ')\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "plugin == None:", "start_line": 71, "start_column": 11, "end_line": 71, "end_column": 25 }, { "span": "plug == None:", "start_line": 124, "start_column": 15, "end_line": 124, "end_column": 27 } ]

[]

1

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Unused import

neurodata/ndstore/.old-EM-connectome/ingest/logan/catmaid.py

[ { "content": "# Copyright 2014 Open Connectome Project (http://openconnecto.me)\n# \n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n# \n# http://www.apache.org/licenses/LICENSE-2.0\n# \n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport argparse\nimport sys\nimport os\n\nimport numpy as np\nfrom PIL import Image\nimport urllib, urllib2\nimport cStringIO\nimport collections\nimport zlib\n\n\"\"\"\n Make a CATMAID image stack from LIF files.\n\"\"\"\n\n\n\nif __name__ == \"__main__\":\n main()\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def main():\n\n parser = argparse.ArgumentParser(description='Build a CATMAID stack out of LIF raw export from Fiji')\n parser.add_argument('inputpath', action=\"store\", help='Directory with annotation PNG files.')\n parser.add_argument('outputpath', action=\"store\", help='Directory to store the tiles.')\n parser.add_argument('slices', action=\"store\", type=int)\n parser.add_argument('ximagesize', action=\"store\", type=int)\n parser.add_argument('yimagesize', action=\"store\", type=int)\n parser.add_argument('zoomlevels', action=\"store\", type=int, default=512)\n parser.add_argument('--color', action=\"store\", default ='R', help='One of RGBCMY. Default R' )\n parser.add_argument('--tilesize', action=\"store\", type=int, default=512)\n\n\n result = parser.parse_args()\n\n ximgsz = result.ximagesize\n yimgsz = result.yimagesize\n tilesz = result.tilesize\n zoomlevels = result.zoomlevels\n slices = result.slices\n\n # make the directory hierarchy\n if not os.path.exists ( os.path.abspath(result.outputpath) ):\n try:\n os.mkdir(os.path.abspath(result.outputpath))\n except:\n print \"Failed to create target directory\"\n elif not os.path.isdir(os.path.abspath(result.outputpath)):\n print \"Target directory is not a directory.\"\n sys.exit(-1)\n\n # and the zoom levels\n for l in range(zoomlevels):\n if not os.path.exists(os.path.abspath('%s/%s/'%(result.outputpath,l))):\n try:\n os.mkdir(os.path.abspath('%s/%s/'%(result.outputpath,l)))\n except:\n print \"Failed to create resolutions directories\"\n\n for sl in range (slices):\n for l in range(zoomlevels):\n\n # directory for each slices\n if not os.path.exists(os.path.abspath('%s/%s/%s'%(result.outputpath,l,sl))):\n try:\n os.mkdir(os.path.abspath('%s/%s/%s'%(result.outputpath,l,sl))) \n except:\n print \"Failed to create slice directories\"\n\n # raw data\n filenm = result.inputpath + '/' + '{:0>4}'.format(sl) + '.raw'\n print \"Opening filenm\" + filenm\n\n # Compute how many tiles\n xtiles = (ximgsz-1)/(tilesz*(2**l))+1\n ytiles = (yimgsz-1)/(tilesz*(2**l))+1\n xdim = xtiles*tilesz*(2**l)\n ydim = ytiles*tilesz*(2**l)\n\n # add the image data into the tile data\n tiledata = np.zeros ( [ydim,xdim], dtype=np.uint32 )\n imgdata = np.uint32(np.fromfile ( filenm, dtype=np.uint8 ).reshape([yimgsz,ximgsz]))\n\n # Pick a channel color\n if result.color == 'R':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = imgdata + 0xFF000000\n elif result.color == 'G':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = np.left_shift(imgdata,8) + 0xFF000000\n elif result.color == 'B':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = np.left_shift(imgdata,16) + 0xFF000000\n elif result.color == 'C':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = np.left_shift(imgdata,16) + np.left_shift(imgdata,8) + 0xFF000000\n elif result.color == 'M':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = imgdata + np.left_shift(imgdata,16) + 0xFF000000\n elif result.color == 'Y':\n tiledata[0:imgdata.shape[0],0:imgdata.shape[1]] = imgdata + np.left_shift(imgdata,8) + 0xFF000000\n else:\n print \"Unknown color\"\n sys.exit(-1)\n\n # Write out the tiles\n for y in range(ytiles):\n for x in range(xtiles):\n outimg = Image.frombuffer ( 'RGBA', (tilesz*(2**l),tilesz*(2**l)), tiledata[y*tilesz*(2**l):(y+1)*tilesz*(2**l),x*tilesz*(2**l):(x+1)*tilesz*(2**l)].flatten(), 'raw', 'RGBA', 0, 1 )\n# outimg = Image.frombuffer ( 'L', (tilesz*(2**l),tilesz(2**l)), tiledata[y*tilesz*(2**l):(y+1)*tilesz*(2**l),x*tilesz*(2**l):(x+1)*tilesz*(2**l)].flatten(), 'raw', 'L', 0, 1 )\n outimg = outimg.resize ([tilesz,tilesz])\n outimg.save(os.path.abspath('%s/%s/%s/%s_%s.png'%(result.outputpath,l,sl,y,x)))\n print '%s/%s/%s/%s_%s.png'%(result.outputpath,l,sl,y,x)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 29 } ]

[ { "span": "import urllib, urllib2", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 22 }, { "span": "import cStringIO", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 16 }, { "span": "import collections", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 18 }, { "span": "import zlib", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 11 } ]

[]

1

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Unused local variable

boldport/pcbmode/pcbmode/utils/bom.py

[ { "content": "def make_bom(quantity=None):\n \"\"\"\n \n \"\"\"\n\n def natural_key(string_):\n \"\"\"See http://www.codinghorror.com/blog/archives/001018.html\"\"\"\n return [int(s) if s.isdigit() else s for s in re.split(r'(\\d+)', string_)]\n\n\n \n dnp_text = 'Do not populate'\n uncateg_text = 'Uncategorised'\n\n components_dict = config.brd['components']\n \n bom_dict = {}\n\n for refdef in components_dict:\n\n description = ''\n\n try:\n place = components_dict[refdef]['place']\n except:\n place = True\n\n try:\n ignore = components_dict[refdef]['bom']['ignore']\n except:\n ignore = False\n\n # If component isn't placed, ignore it\n if place == True and ignore == False:\n\n # Get footprint definition and shapes\n try:\n footprint_name = components_dict[refdef]['footprint']\n except:\n msg.error(\"Cannot find a 'footprint' name for refdef %s.\" % refdef)\n \n # Open footprint file\n fname = os.path.join(config.cfg['base-dir'],\n config.cfg['locations']['components'],\n footprint_name + '.json')\n footprint_dict = utils.dictFromJsonFile(fname)\n \n info_dict = footprint_dict.get('info') or {}\n \n try: \n comp_bom_dict = components_dict[refdef]['bom']\n except:\n comp_bom_dict = {}\n \n try: \n fp_bom_dict = footprint_dict['info']\n except:\n fp_bom_dict = {}\n \n \n # Override component BoM info on top of footprint info\n for key in comp_bom_dict:\n fp_bom_dict[key] = comp_bom_dict[key]\n\n description = fp_bom_dict.get('description') or uncateg_text\n\n try:\n dnp = components_dict[refdef]['bom']['dnp']\n except:\n dnp = False \n\n if dnp == True:\n description = dnp_text\n \n if description not in bom_dict:\n bom_dict[description] = fp_bom_dict\n bom_dict[description]['refdefs'] = []\n bom_dict[description]['refdefs'].append(refdef)\n \n bom_dict[description]['placement'] = components_dict[refdef]['layer']\n \n\n try:\n bom_content = config.brd['bom']\n except:\n bom_content = [\n {\n \"field\": \"line-item\",\n \"text\": \"#\"\n },\n {\n \"field\": \"quantity\",\n \"text\": \"Qty\"\n },\n {\n \"field\": \"designators\",\n \"text\": \"Designators\"\n }, \n {\n \"field\": \"description\",\n \"text\": \"Description\"\n }, \n {\n \"field\": \"package\",\n \"text\": \"Package\"\n }, \n {\n \"field\": \"manufacturer\",\n \"text\": \"Manufacturer\"\n }, \n {\n \"field\": \"part-number\",\n \"text\": \"Part #\"\n },\n {\n \"field\": \"suppliers\",\n \"text\": \"Suppliers\",\n \"suppliers\": \n [\n {\n \"field\": \"farnell\",\n \"text\": \"Farnell #\",\n \"search-url\": \"http://uk.farnell.com/catalog/Search?st=\"\n },\n { \n \"field\": \"mouser\",\n \"text\": \"Mouser #\",\n \"search-url\": \"http://uk.mouser.com/Search/Refine.aspx?Keyword=\"\n },\n {\n \"field\": \"octopart\",\n \"text\": \"Octopart\",\n \"search-url\": \"https://octopart.com/search?q=\"\n }\n ]\n }, \n {\n \"field\": \"placement\",\n \"text\": \"Layer\"\n }, \n {\n \"field\": \"notes\",\n \"text\": \"Notes\"\n }\n ]\n\n\n\n # Set up the BoM file name\n bom_path = os.path.join(config.cfg['base-dir'],\n config.cfg['locations']['build'],\n 'bom')\n # Create path if it doesn't exist already\n utils.create_dir(bom_path)\n\n board_name = config.cfg['name']\n board_revision = config.brd['config'].get('rev')\n base_name = \"%s_rev_%s\" % (board_name, board_revision)\n\n bom_html = os.path.join(bom_path, base_name + '_%s.html'% 'bom')\n bom_csv = os.path.join(bom_path, base_name + '_%s.csv'% 'bom')\n\n\n html = []\n csv = []\n\n\n html.append('<html>')\n html.append('<style type=\"text/css\">')\n try:\n css = config.stl['layout']['bom']['css']\n except:\n css = []\n for line in css:\n html.append(line)\n html.append('</style>')\n html.append('<table class=\"tg\">')\n\n header = []\n for item in bom_content:\n if item['field'] == 'suppliers':\n for supplier in item['suppliers']:\n header.append(\"%s\" % supplier['text'])\n else:\n header.append(\"%s\" % item['text'])\n if item['field'] == 'quantity' and quantity != None:\n header.append(\"@%s\" % quantity)\n\n html.append(' <tr>')\n html.append(' <th class=\"tg-title\" colspan=\"%s\">Bill of materials -- %s rev %s</th>' % (len(header), board_name, board_revision))\n html.append(' </tr>') \n html.append(' <tr>')\n for item in header:\n html.append(' <th class=\"tg-header\">%s</th>' % item)\n html.append(' </tr>')\n \n\n uncateg_content = []\n dnp_content = []\n index = 1\n\n for desc in bom_dict:\n content = []\n for item in bom_content:\n if item['field'] == 'line-item':\n content.append(\"<strong>%s</strong>\" % str(index))\n elif item['field'] == 'suppliers':\n for supplier in item['suppliers']:\n\n try:\n number = bom_dict[desc][item['field']][supplier['field']]\n except:\n number = \"\"\n\n search_url = supplier.get('search-url')\n if search_url != None:\n content.append('<a href=\"%s%s\">%s</a>' % (search_url, number, number))\n else:\n content.append(number)\n\n elif item['field'] == 'quantity':\n units = len(bom_dict[desc]['refdefs'])\n content.append(\"%s\" % (str(units)))\n if quantity != None:\n content.append(\"%s\" % (str(units*int(quantity))))\n elif item['field'] == 'designators':\n # Natural/human sort the list of designators\n sorted_list = sorted(bom_dict[desc]['refdefs'], key=natural_key)\n\n refdefs = ''\n for refdef in sorted_list[:-1]:\n refdefs += \"%s \" % refdef\n refdefs += \"%s\" % sorted_list[-1]\n content.append(\"%s \" % refdefs)\n elif item['field'] == 'description':\n content.append(\"%s \" % desc)\n else:\n try:\n content.append(bom_dict[desc][item['field']])\n except:\n content.append(\"\")\n\n if desc == uncateg_text:\n uncateg_content = content\n elif desc == dnp_text:\n dnp_content = content\n else:\n html.append(' <tr>')\n for item in content:\n html.append(' <td class=\"tg-item-%s\">%s</td>' % (('odd','even')[index%2==0], item))\n html.append(' </tr>')\n index += 1\n\n\n for content in (dnp_content, uncateg_content):\n html.append(' <tr class=\"tg-skip\">')\n html.append(' </tr>') \n html.append(' <tr>')\n if len(content) > 0:\n content[0] = index\n for item in content:\n html.append(' <td class=\"tg-item-%s\">%s</td>' % (('odd','even')[index%2==0], item))\n html.append(' </tr>')\n index += 1\n\n\n html.append('</table>')\n\n html.append('<p>Generated by <a href=\"http://pcbmode.com\">PCBmodE</a>, an open source PCB design software. PCBmodE was written and is maintained by <a href=\"http://boldport.com\">Boldport</a>, creators of beautifully functional circuits.')\n\n html.append('</html>')\n\n with open(bom_html, \"wb\") as f:\n for line in html:\n f.write(line+'\\n')\n\n \n #print bom_dict", "metadata": "root.make_bom", "header": "['module', '___EOS___']", "index": 22 } ]

[ { "span": "bom_csv ", "start_line": 182, "start_column": 4, "end_line": 182, "end_column": 11 }, { "span": "csv ", "start_line": 186, "start_column": 4, "end_line": 186, "end_column": 7 } ]

[]

1

true

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