diff --git a/CHANGELOG.md b/CHANGELOG.md
index 5cd3a5d..e32faed 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,8 +7,10 @@
 - New option `root_level_metadata_as_raw_cell`. Set it to `False` if you don't want to see root level metadata
 of R Markdown notebooks as a raw cell in Jupyter (#415)
 - New option `doxygen_equation_markers` to translate Markdown equations into Doxygen equations (#517)
+- New option `custom_cell_magics` to comment out cells starting with user-specific cell magics (#513)
 - Tested `isort` on notebooks (#553)
 - `jupytext notebook.ipynb --to filename.py` will warn that `--to` is used in place of `--output`.
+- `jupytext --set-formats filename.py` will suggest to use `--sync` instead of `--set-formats` (#544)
 - Warn if 'Include Metadata' is off when saving text files in Jupyter (#561)
 - Test that notebooks paired through a configuration file are left unmodified (#598)
 - Test that metadata filters in the configuration files are taken into account when using `jupytext --to` (#543)
@@ -19,7 +21,7 @@ of R Markdown notebooks as a raw cell in Jupyter (#415)
 - The `# %%` cell marker has the same indentation as the first line in the cell (#562)
 - The `md:myst` and `md:pandoc` are always included in the Jupytext formats, and an informative runtime
 error will occur if the required dependencies, resp. `markdown-it-py` and `pandoc`, are not installed. (#556)
-- Jupytext now depends on `markdown-it-py` and always feature the MyST-Markdown format (Python 3.6 and above, #591)
+- Jupytext now depends on `markdown-it-py` and always features the MyST-Markdown format (Python 3.6 and above, #591)
 
 **Fixed**
 - Configured coverage targets in `codecov.yml`
diff --git a/jupytext/cell_to_text.py b/jupytext/cell_to_text.py
index 9a24122..2cc4d1d 100644
--- a/jupytext/cell_to_text.py
+++ b/jupytext/cell_to_text.py
@@ -44,7 +44,10 @@ class BaseCellExporter(object):
             cell.metadata, self.fmt.get("cell_metadata_filter"), _IGNORE_CELL_METADATA
         )
         if self.parse_cell_language:
-            self.language, magic_args = cell_language(self.source, default_language)
+            custom_cell_magics = self.fmt.get("custom_cell_magics", "").split(",")
+            self.language, magic_args = cell_language(
+                self.source, default_language, custom_cell_magics
+            )
 
             if magic_args:
                 self.metadata["magic_args"] = magic_args
diff --git a/jupytext/cli.py b/jupytext/cli.py
index 3b98867..828b663 100644
--- a/jupytext/cli.py
+++ b/jupytext/cli.py
@@ -404,7 +404,10 @@ def jupytext(args=None):
 def jupytext_single_file(nb_file, args, log):
     """Apply the jupytext commmand, with given arguments, to a single file"""
     if nb_file == "-" and args.sync:
-        raise ValueError("Cannot sync a notebook on stdin")
+        msg = "Missing notebook path."
+        if args.set_formats is not None and os.path.isfile(args.set_formats):
+            msg += " Maybe you mean 'jupytext --sync {}' ?".format(args.set_formats)
+        raise ValueError(msg)
 
     nb_dest = args.output or (
         None
diff --git a/jupytext/config.py b/jupytext/config.py
index 8c602de..177db55 100644
--- a/jupytext/config.py
+++ b/jupytext/config.py
@@ -136,6 +136,14 @@ class JupytextConfiguration(Configurable):
         config=True,
     )
 
+    custom_cell_magics = Unicode(
+        "",
+        help='A comma separated list of cell magics. Use e.g. custom_cell_magics = "configure,local" '
+        'if you want code cells starting with the Spark magic cell commands "configure" and "local" '
+        "to be commented out when converted to scripts.",
+        config=True,
+    )
+
     def set_default_format_options(self, format_options, read=False):
         """Set default format option"""
         if self.default_notebook_metadata_filter:
@@ -166,6 +174,8 @@ class JupytextConfiguration(Configurable):
             format_options.setdefault("cell_markers", self.default_cell_markers)
         if read and self.sphinx_convert_rst2md:
             format_options.setdefault("rst2md", self.sphinx_convert_rst2md)
+        if self.custom_cell_magics:
+            format_options.setdefault("custom_cell_magics", self.custom_cell_magics)
 
     def default_formats(self, path):
         """Return the default formats, if they apply to the current path #157"""
diff --git a/jupytext/formats.py b/jupytext/formats.py
index c7088bb..b1e6afd 100644
--- a/jupytext/formats.py
+++ b/jupytext/formats.py
@@ -709,6 +709,7 @@ _VALID_FORMAT_OPTIONS = _BINARY_FORMAT_OPTIONS + [
     "notebook_metadata_filter",
     "cell_metadata_filter",
     "cell_markers",
+    "custom_cell_magics",
 ]
 _VALID_FORMAT_NAMES = {fmt.format_name for fmt in JUPYTEXT_FORMATS}
 
diff --git a/jupytext/jupytext.py b/jupytext/jupytext.py
index 09fa4ee..740d62f 100644
--- a/jupytext/jupytext.py
+++ b/jupytext/jupytext.py
@@ -116,7 +116,10 @@ class TextNotebookConverter(NotebookReader, NotebookWriter):
                 )  # pragma: no cover
             lines = lines[pos:]
 
-        set_main_and_cell_language(metadata, cells, self.implementation.extension)
+        custom_cell_magics = self.fmt.get("custom_cell_magics", "").split(",")
+        set_main_and_cell_language(
+            metadata, cells, self.implementation.extension, custom_cell_magics
+        )
         cell_metadata = set()
         for cell in cells:
             cell_metadata.update(cell.metadata.keys())
diff --git a/jupytext/languages.py b/jupytext/languages.py
index 4560b5f..917effb 100644
--- a/jupytext/languages.py
+++ b/jupytext/languages.py
@@ -123,7 +123,7 @@ def same_language(kernel_language, language):
     return usual_language_name(kernel_language) == usual_language_name(language)
 
 
-def set_main_and_cell_language(metadata, cells, ext):
+def set_main_and_cell_language(metadata, cells, ext, custom_cell_magics):
     """Set main language for the given collection of cells, and
     use magics for cells that use other languages"""
     main_language = default_language_from_metadata_and_ext(metadata, ext)
@@ -152,7 +152,7 @@ def set_main_and_cell_language(metadata, cells, ext):
             if usual_language_name(language) == main_language:
                 continue
 
-            if language in _JUPYTER_LANGUAGES:
+            if language in _JUPYTER_LANGUAGES or language in custom_cell_magics:
                 cell["metadata"].pop("language")
                 magic = "%%" if main_language != "csharp" else "#!"
                 if "magic_args" in cell["metadata"]:
@@ -165,7 +165,7 @@ def set_main_and_cell_language(metadata, cells, ext):
                     cell["source"] = u"{}{}\n".format(magic, language) + cell["source"]
 
 
-def cell_language(source, default_language):
+def cell_language(source, default_language, custom_cell_magics):
     """Return cell language and language options, if any"""
     if source:
         line = source[0]
@@ -183,7 +183,7 @@ def cell_language(source, default_language):
                 lang = magic
                 magic_args = ""
 
-            if lang in _JUPYTER_LANGUAGES:
+            if lang in _JUPYTER_LANGUAGES or lang in custom_cell_magics:
                 source.pop(0)
                 return lang, magic_args
 

Set-formats on fresh text file based on configuration
This is an extension of a related issue #485. 

I would like to be able to set the format on a fresh text file or modify the text file based on the current configuration (local if available else global) without specifying the argument to `--set-formats`.

For example, for the configuration in local `.jupyter`
```
# Pair notebooks
default_jupytext_formats = "markdown//md,notebooks//ipynb,scripts//py:percent"
```
and we have a a directory structure with a `.md` file in `markdown` directory:
```
.
├── .jupytext
├── markdown
│   └── intro.md
├── notebooks
└── scripts
```
And the pairing setup of the markdown file could be:
* Within parent directory
```
jupytext --set-formats markdown/00-intro.md
```
* or within `markdown` directory
```
jupytext --set-formats 00-intro.md
```
Above two command examples should be informed by the configuration that the markdown file is in the `markdown` directory.

To check what the current version (`1.5.0`) does, I ran both commands and got the same error
```
Traceback (most recent call last):
  File "C:\Users\at17\.conda\envs\sthm\Scripts\jupytext-script.py", line 9, in <module>
    sys.exit(jupytext())
  File "C:\Users\at17\.conda\envs\sthm\lib\site-packages\jupytext\cli.py", line 376, in jupytext
    exit_code += jupytext_single_file(nb_file, args, log)
  File "C:\Users\at17\.conda\envs\sthm\lib\site-packages\jupytext\cli.py", line 389, in jupytext_single_file
    raise ValueError("Cannot sync a notebook on stdin")
ValueError: Cannot sync a notebook on stdin
```
Is this usecase not yet supported or is there a different command I should use?
Lastly, I wonder if commandline operations can be used with the configuration which will save me from typing same arguments repetitively. 
diff --git a/tests/test_cli.py b/tests/test_cli.py
index 3169c0e..167fb5e 100644
--- a/tests/test_cli.py
+++ b/tests/test_cli.py
@@ -289,7 +289,6 @@ def test_combine_lower_version_raises(tmpdir):
         "This error occurs because notebook.py is in the light format in version 55.4, "
         "while jupytext version .* installed at .* can only read the light format in versions .*",
     ):
-
         jupytext([tmp_nbpy, "--to", "ipynb", "--update"])
 
 
@@ -1140,3 +1139,30 @@ def test_jupytext_to_file_emits_a_warning(tmpdir):
 
     with pytest.warns(UserWarning, match="Maybe you want to use the '-o' option"):
         jupytext(["notebook.ipynb", "--to", "script.py"])
+
+
+def test_jupytext_set_formats_file_gives_an_informative_error(tmpdir):
+    """The user may type
+        jupytext --set-formats notebook.md
+    meaning
+        jupytext --syn notebook.md
+    """
+    os.chdir(str(tmpdir))
+
+    cfg_file = tmpdir.join("jupytext.toml")
+    cfg_file.write('default_jupytext_formats = "md,ipynb,py:percent"')
+
+    md_file = tmpdir.join("notebook.md")
+    py_file = tmpdir.join("notebook.py")
+    nb_file = tmpdir.join("notebook.ipynb")
+    md_file.write("Some text")
+
+    with pytest.warns(None) as record:
+        jupytext(["--sync", "notebook.md"])
+
+    assert len(record) == 0
+    assert py_file.exists()
+    assert nb_file.exists()
+
+    with pytest.raises(ValueError, match="jupytext --sync notebook.md"):
+        jupytext(["--set-formats", "notebook.md"])
diff --git a/tests/test_custom_cell_magics.py b/tests/test_custom_cell_magics.py
new file mode 100644
index 0000000..97f39d4
--- /dev/null
+++ b/tests/test_custom_cell_magics.py
@@ -0,0 +1,41 @@
+import nbformat
+from nbformat.v4.nbbase import new_notebook, new_code_cell
+from jupytext.cli import jupytext as jupytext_cli
+from jupytext.languages import _JUPYTER_LANGUAGES_LOWER_AND_UPPER
+from jupytext.compare import compare_notebooks
+
+
+def test_custom_cell_magics(
+    tmpdir,
+    nb=new_notebook(
+        cells=[
+            new_code_cell("%%sql -o tables -q\n SHOW TABLES"),
+            new_code_cell(
+                """%%configure -f
+{"executorMemory": "3072M", "executorCores": 4, "numExecutors":10}"""
+            ),
+            new_code_cell("%%local\na=1"),
+        ]
+    ),
+):
+    cfg_file = tmpdir.join("jupytext.toml")
+    nb_file = tmpdir.join("notebook.ipynb")
+    py_file = tmpdir.join("notebook.py")
+
+    cfg_file.write('custom_cell_magics = "configure,local"')
+    assert "configure" not in _JUPYTER_LANGUAGES_LOWER_AND_UPPER
+    assert "logs" not in _JUPYTER_LANGUAGES_LOWER_AND_UPPER
+
+    nbformat.write(nb, str(nb_file))
+
+    jupytext_cli([str(nb_file), "--to", "py"])
+    py = py_file.read()
+
+    for line in py.splitlines():
+        if line:
+            assert line.startswith("# "), line
+
+    jupytext_cli([str(py_file), "--to", "notebook"])
+    nb2 = nbformat.read(str(nb_file), as_version=4)
+
+    compare_notebooks(nb2, nb)

environment.yml
pip install -e .
parse_log_pytest
environment.yml
3.7
pytest --no-header -rA --tb=line --color=no -p no:cacheprovider -W ignore::DeprecationWarning
alabaster @ file:///home/ktietz/src/ci/alabaster_1611921544520/work
anyio @ file:///tmp/build/80754af9/anyio_1644481697509/work/dist
argon2-cffi @ file:///opt/conda/conda-bld/argon2-cffi_1645000214183/work
argon2-cffi-bindings @ file:///tmp/build/80754af9/argon2-cffi-bindings_1644569681205/work
astroid @ file:///croot/astroid_1676904296642/work
attrs==20.3.0
autopep8 @ file:///opt/conda/conda-bld/autopep8_1650463822033/work
Babel @ file:///croot/babel_1671781930836/work
backcall @ file:///home/ktietz/src/ci/backcall_1611930011877/work
beautifulsoup4 @ file:///opt/conda/conda-bld/beautifulsoup4_1650462163268/work
black @ file:///opt/conda/conda-bld/black_1660237809219/work
bleach @ file:///opt/conda/conda-bld/bleach_1641577558959/work
brotlipy==0.7.0
certifi @ file:///croot/certifi_1671487769961/work/certifi
cffi @ file:///croot/cffi_1670423208954/work
cfgv @ file:///opt/conda/conda-bld/cfgv_1663174654333/work
charset-normalizer @ file:///tmp/build/80754af9/charset-normalizer_1630003229654/work
click @ file:///tmp/build/80754af9/click_1646056591685/work
cmarkgfm @ file:///tmp/build/80754af9/cmarkgfm_1613500761843/work
colorama @ file:///croot/colorama_1672386526460/work
commonmark @ file:///Users/ktietz/demo/mc3/conda-bld/commonmark_1630649545323/work
coverage @ file:///tmp/build/80754af9/coverage_1645520980410/work
cryptography @ file:///croot/cryptography_1677533068310/work
cycler @ file:///tmp/build/80754af9/cycler_1637851556182/work
debugpy @ file:///tmp/build/80754af9/debugpy_1637091426235/work
decorator @ file:///opt/conda/conda-bld/decorator_1643638310831/work
defusedxml @ file:///tmp/build/80754af9/defusedxml_1615228127516/work
dill @ file:///croot/dill_1667919592856/work
distlib @ file:///croot/distlib_1673477531104/work
docutils @ file:///opt/conda/conda-bld/docutils_1657175430858/work
entrypoints @ file:///tmp/build/80754af9/entrypoints_1649908585034/work
execnet @ file:///tmp/build/80754af9/execnet_1623921183358/work
fastjsonschema @ file:///opt/conda/conda-bld/python-fastjsonschema_1661371079312/work
filelock @ file:///croot/filelock_1672387128942/work
flake8 @ file:///opt/conda/conda-bld/flake8_1648129545443/work
flit_core @ file:///opt/conda/conda-bld/flit-core_1644941570762/work/source/flit_core
fonttools==4.25.0
future @ file:///croot/future_1677599870788/work
identify @ file:///opt/conda/conda-bld/identify_1663193176610/work
idna @ file:///croot/idna_1666125576474/work
imagesize @ file:///opt/conda/conda-bld/imagesize_1657179498843/work
importlib-metadata @ file:///tmp/build/80754af9/importlib-metadata_1648562407465/work
importlib-resources @ file:///tmp/build/80754af9/importlib_resources_1625135880749/work
iniconfig @ file:///home/linux1/recipes/ci/iniconfig_1610983019677/work
ipykernel @ file:///opt/conda/conda-bld/ipykernel_1662361798230/work
ipython @ file:///tmp/abs_94gruux8u8/croots/recipe/ipython_1659529858706/work
ipython-genutils @ file:///tmp/build/80754af9/ipython_genutils_1606773439826/work
ipywidgets @ file:///croot/ipywidgets_1701289330913/work
isort @ file:///tmp/build/80754af9/isort_1628603791788/work
jedi @ file:///tmp/build/80754af9/jedi_1644299024593/work
jeepney @ file:///tmp/build/80754af9/jeepney_1627537048313/work
Jinja2 @ file:///croot/jinja2_1666908132255/work
json5 @ file:///tmp/build/80754af9/json5_1624432770122/work
jsonschema @ file:///croot/jsonschema_1676558650973/work
jupyter @ file:///tmp/abs_33h4eoipez/croots/recipe/jupyter_1659349046347/work
jupyter-console @ file:///croot/jupyter_console_1671541909316/work
jupyter-contrib-core @ file:///home/conda/feedstock_root/build_artifacts/jupyter_contrib_core_1657548529421/work
jupyter-contrib-nbextensions @ file:///home/conda/feedstock_root/build_artifacts/jupyter_contrib_nbextensions_1670068802953/work
jupyter-highlight-selected-word @ file:///home/conda/feedstock_root/build_artifacts/jupyter_highlight_selected_word_1695322379939/work
jupyter-latex-envs @ file:///home/conda/feedstock_root/build_artifacts/jupyter_latex_envs_1614852190293/work
jupyter-nbextensions-configurator @ file:///home/conda/feedstock_root/build_artifacts/jupyter_nbextensions_configurator_1670793770953/work
jupyter-server @ file:///croot/jupyter_server_1671707632269/work
jupyter_client @ file:///croot/jupyter_client_1676329080601/work
jupyter_core @ file:///croot/jupyter_core_1668084443243/work
jupyterlab @ file:///croot/jupyterlab_1675354114448/work
jupyterlab-pygments @ file:///tmp/build/80754af9/jupyterlab_pygments_1601490720602/work
jupyterlab-widgets @ file:///tmp/build/80754af9/jupyterlab_widgets_1609884341231/work
jupyterlab_server @ file:///croot/jupyterlab_server_1677143054853/work
-e git+https://github.com/mwouts/jupytext.git@2cee128f047fcfd6626f3eb123eebee05c89e6e9#egg=jupytext
keyring @ file:///tmp/build/80754af9/keyring_1638531257242/work
kiwisolver @ file:///croot/kiwisolver_1672387140495/work
lazy-object-proxy @ file:///tmp/build/80754af9/lazy-object-proxy_1616529086024/work
lxml @ file:///opt/conda/conda-bld/lxml_1657545139709/work
markdown-it-py==0.5.8
MarkupSafe @ file:///opt/conda/conda-bld/markupsafe_1654597864307/work
matplotlib @ file:///croot/matplotlib-suite_1667356714455/work
matplotlib-inline @ file:///opt/conda/conda-bld/matplotlib-inline_1662014470464/work
mccabe @ file:///opt/conda/conda-bld/mccabe_1644221741721/work
mdit-py-plugins @ file:///home/conda/feedstock_root/build_artifacts/mdit-py-plugins_1677788301074/work
mdurl @ file:///opt/conda/conda-bld/mdurl_1659716024347/work
mistune @ file:///tmp/build/80754af9/mistune_1594373098390/work
munkres==1.1.4
mypy-extensions==0.4.3
myst-parser @ file:///home/conda/feedstock_root/build_artifacts/myst-parser_1678230311298/work
nbclassic @ file:///croot/nbclassic_1676902904845/work
nbclient @ file:///tmp/build/80754af9/nbclient_1650308370114/work
nbconvert @ file:///croot/nbconvert_1668450669124/work
nbformat @ file:///croot/nbformat_1670352325207/work
nest-asyncio @ file:///croot/nest-asyncio_1672387112409/work
nodeenv @ file:///opt/conda/conda-bld/nodeenv_1663181097182/work
notebook @ file:///croot/notebook_1668179881751/work
notebook_shim @ file:///croot/notebook-shim_1668160579331/work
numpy @ file:///opt/conda/conda-bld/numpy_and_numpy_base_1653915516269/work
packaging @ file:///croot/packaging_1671697413597/work
pandocfilters @ file:///opt/conda/conda-bld/pandocfilters_1643405455980/work
parso @ file:///opt/conda/conda-bld/parso_1641458642106/work
pathspec @ file:///croot/pathspec_1674681560568/work
pexpect @ file:///tmp/build/80754af9/pexpect_1605563209008/work
pickleshare @ file:///tmp/build/80754af9/pickleshare_1606932040724/work
Pillow==9.4.0
pkginfo @ file:///croot/pkginfo_1666725041340/work
pkgutil_resolve_name @ file:///opt/conda/conda-bld/pkgutil-resolve-name_1661463321198/work
platformdirs @ file:///opt/conda/conda-bld/platformdirs_1662711380096/work
pluggy @ file:///tmp/build/80754af9/pluggy_1648042572264/work
ply==3.11
pre-commit @ file:///opt/conda/conda-bld/pre-commit_1663261387970/work
prometheus-client @ file:///tmp/abs_d3zeliano1/croots/recipe/prometheus_client_1659455100375/work
prompt-toolkit @ file:///croot/prompt-toolkit_1672387306916/work
psutil @ file:///opt/conda/conda-bld/psutil_1656431268089/work
ptyprocess @ file:///tmp/build/80754af9/ptyprocess_1609355006118/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl
py @ file:///opt/conda/conda-bld/py_1644396412707/work
pycodestyle @ file:///tmp/build/80754af9/pycodestyle_1636635402688/work
pycparser @ file:///tmp/build/80754af9/pycparser_1636541352034/work
pyflakes @ file:///tmp/build/80754af9/pyflakes_1636644436481/work
Pygments @ file:///opt/conda/conda-bld/pygments_1644249106324/work
pylint @ file:///croot/pylint_1676919896363/work
pyOpenSSL @ file:///croot/pyopenssl_1677607685877/work
pyparsing @ file:///opt/conda/conda-bld/pyparsing_1661452539315/work
PyQt5-sip==12.11.0
pyrsistent @ file:///tmp/build/80754af9/pyrsistent_1636098896055/work
PySocks @ file:///tmp/build/80754af9/pysocks_1594394576006/work
pytest==7.1.2
pytest-cov @ file:///tmp/build/80754af9/pytest-cov_1637159997573/work
pytest-forked @ file:///home/ktietz/src/ci_ipy2/pytest-forked_1612520962786/work
pytest-xdist @ file:///opt/conda/conda-bld/pytest-xdist_1651785087298/work
python-dateutil @ file:///tmp/build/80754af9/python-dateutil_1626374649649/work
pytz @ file:///croot/pytz_1671697431263/work
PyYAML @ file:///croot/pyyaml_1670514731622/work
pyzmq @ file:///opt/conda/conda-bld/pyzmq_1657724186960/work
qtconsole @ file:///croot/qtconsole_1674008428467/work
QtPy @ file:///opt/conda/conda-bld/qtpy_1662014892439/work
readme-renderer @ file:///tmp/build/80754af9/readme_renderer_1613502053370/work
recommonmark @ file:///Users/ktietz/demo/mc3/conda-bld/recommonmark_1629466645250/work
requests @ file:///opt/conda/conda-bld/requests_1657734628632/work
requests-toolbelt @ file:///Users/ktietz/demo/mc3/conda-bld/requests-toolbelt_1629456163440/work
rfc3986 @ file:///Users/ktietz/demo/mc3/conda-bld/rfc3986_1629478296451/work
SecretStorage @ file:///tmp/build/80754af9/secretstorage_1614022884812/work
Send2Trash @ file:///tmp/build/80754af9/send2trash_1632406701022/work
sip @ file:///tmp/abs_44cd77b_pu/croots/recipe/sip_1659012365470/work
six @ file:///tmp/build/80754af9/six_1644875935023/work
sniffio @ file:///tmp/build/80754af9/sniffio_1614030478629/work
snowballstemmer @ file:///tmp/build/80754af9/snowballstemmer_1637937080595/work
soupsieve @ file:///croot/soupsieve_1666296392845/work
Sphinx @ file:///opt/conda/conda-bld/sphinx_1657784123546/work
sphinx-copybutton==0.5.2
sphinx-gallery @ file:///home/conda/feedstock_root/build_artifacts/sphinx-gallery_1700542355088/work
sphinx-rtd-theme==2.0.0
sphinxcontrib-applehelp @ file:///home/ktietz/src/ci/sphinxcontrib-applehelp_1611920841464/work
sphinxcontrib-devhelp @ file:///home/ktietz/src/ci/sphinxcontrib-devhelp_1611920923094/work
sphinxcontrib-htmlhelp @ file:///tmp/build/80754af9/sphinxcontrib-htmlhelp_1623945626792/work
sphinxcontrib-jquery==4.1
sphinxcontrib-jsmath @ file:///home/ktietz/src/ci/sphinxcontrib-jsmath_1611920942228/work
sphinxcontrib-qthelp @ file:///home/ktietz/src/ci/sphinxcontrib-qthelp_1611921055322/work
sphinxcontrib-serializinghtml @ file:///tmp/build/80754af9/sphinxcontrib-serializinghtml_1624451540180/work
terminado @ file:///croot/terminado_1671751832461/work
tinycss2 @ file:///croot/tinycss2_1668168815555/work
toml @ file:///tmp/build/80754af9/toml_1616166611790/work
tomli @ file:///opt/conda/conda-bld/tomli_1657175507142/work
tomlkit @ file:///tmp/abs_56_0lnnq5x/croots/recipe/tomlkit_1658946880479/work
tornado @ file:///opt/conda/conda-bld/tornado_1662061693373/work
tqdm @ file:///opt/conda/conda-bld/tqdm_1664392687731/work
traitlets @ file:///croot/traitlets_1671143879854/work
twine @ file:///croot/twine_1690451545513/work
typed-ast @ file:///tmp/build/80754af9/typed-ast_1624953380449/work
typing_extensions @ file:///croot/typing_extensions_1669924550328/work
ukkonen @ file:///opt/conda/conda-bld/ukkonen_1663174535639/work
urllib3 @ file:///croot/urllib3_1673575502006/work
virtualenv @ file:///croot/virtualenv_1674752100526/work
wcwidth @ file:///Users/ktietz/demo/mc3/conda-bld/wcwidth_1629357192024/work
webencodings==0.5.1
websocket-client @ file:///tmp/build/80754af9/websocket-client_1614804260725/work
widgetsnbextension @ file:///tmp/build/80754af9/widgetsnbextension_1645009354203/work
wrapt @ file:///tmp/abs_c335821b-6e43-4504-9816-b1a52d3d3e1eel6uae8l/croots/recipe/wrapt_1657814400492/work
zipp @ file:///croot/zipp_1672387121353/work

name: jupytext
channels:
  - defaults
  - https://repo.anaconda.com/pkgs/main
  - https://repo.anaconda.com/pkgs/r
  - conda-forge
dependencies:
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  - pluggy=1.0.0=py37h06a4308_1
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  - pre-commit=2.20.0=py37h06a4308_0
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  - prompt_toolkit=3.0.36=hd3eb1b0_0
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  - pyparsing=3.0.9=py37h06a4308_0
  - pyqt=5.15.7=py37h6a678d5_1
  - pyqt5-sip=12.11.0=py37h6a678d5_1
  - pyrsistent=0.18.0=py37heee7806_0
  - pysocks=1.7.1=py37_1
  - pytest=7.1.2=py37h06a4308_0
  - pytest-cov=3.0.0=pyhd3eb1b0_0
  - pytest-forked=1.3.0=pyhd3eb1b0_0
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  - python=3.7.16=h7a1cb2a_0
  - python-dateutil=2.8.2=pyhd3eb1b0_0
  - python-fastjsonschema=2.16.2=py37h06a4308_0
  - pytz=2022.7=py37h06a4308_0
  - pyyaml=6.0=py37h5eee18b_1
  - pyzmq=23.2.0=py37h6a678d5_0
  - qt-main=5.15.2=h5b8104b_9
  - qt-webengine=5.15.9=hd2b0992_4
  - qtconsole=5.4.0=py37h06a4308_0
  - qtpy=2.2.0=py37h06a4308_0
  - qtwebkit=5.212=h4eab89a_4
  - readline=8.2=h5eee18b_0
  - readme_renderer=24.0=py37h06a4308_0
  - recommonmark=0.6.0=pyhd3eb1b0_0
  - requests=2.28.1=py37h06a4308_0
  - requests-toolbelt=0.9.1=pyhd3eb1b0_0
  - rfc3986=1.4.0=pyhd3eb1b0_0
  - secretstorage=3.3.1=py37h06a4308_0
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  - setuptools=65.6.3=py37h06a4308_0
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  - sphinxcontrib-htmlhelp=2.0.0=pyhd3eb1b0_0
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  - tqdm=4.64.1=py37h06a4308_0
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  - twine=3.7.1=pyhd3eb1b0_1
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  - typing_extensions=4.4.0=py37h06a4308_0
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  - virtualenv=20.17.1=py37h06a4308_0
  - wcwidth=0.2.5=pyhd3eb1b0_0
  - webencodings=0.5.1=py37_1
  - websocket-client=0.58.0=py37h06a4308_4
  - wheel=0.38.4=py37h06a4308_0
  - widgetsnbextension=3.5.2=py37h06a4308_0
  - wrapt=1.14.1=py37h5eee18b_0
  - xz=5.6.4=h5eee18b_1
  - yaml=0.2.5=h7b6447c_0
  - yarn=1.22.19=h06a4308_0
  - zeromq=4.3.5=h6a678d5_0
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  - zlib=1.2.13=h5eee18b_1
  - zstd=1.5.6=hc292b87_0
  - pip:
      - attrs==20.3.0
      - markdown-it-py==0.5.8
      - sphinx-copybutton==0.5.2
      - sphinx-rtd-theme==2.0.0
      - sphinxcontrib-jquery==4.1
prefix: /opt/conda/envs/jupytext

tests/test_cli.py::test_jupytext_set_formats_file_gives_an_informative_error tests/test_custom_cell_magics.py::test_custom_cell_magics
tests/test_cli.py::test_rst2md tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb-py:light] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb-py:percent] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/text_outputs_and_images.ipynb-md] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb-py:light] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb-py:percent] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/sample_rise_notebook_66.ipynb-md] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/plotly_graphs.ipynb-py:light] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/plotly_graphs.ipynb-py:percent] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/plotly_graphs.ipynb-md] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb-py:light] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb-py:percent] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/nteract_with_parameter.ipynb-md] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb-py:light] tests/test_cli.py::test_convert_and_update_preserves_notebook[/jupytext/tests/notebooks/ipynb_py/notebook_with_complex_metadata.ipynb-py:percent] 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tests/test_cli.py::test_pair_in_tree_and_parent tests/test_cli.py::test_sync_pipe_config tests/test_cli.py::test_sync_script_dotdot_folder_564 tests/test_cli.py::test_jupytext_to_file_emits_a_warning
jupytext/jupytext.py jupytext/cell_to_text.py jupytext/cli.py jupytext/formats.py jupytext/languages.py jupytext/config.py CHANGELOG.md
jupytext/jupytext.py jupytext/cell_to_text.py jupytext/cli.py jupytext/formats.py jupytext/languages.py jupytext/config.py CHANGELOG.md