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Donglai Wei commited on
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center.h5 -> csv; unify the shape

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  1. README.md +9 -10
  2. calcium/nejatbakhsh20/000541_sub-20190924-01_ses-20190924_ophys_center.csv +0 -0
  3. calcium/nejatbakhsh20/000541_sub-20190924-01_ses-20190924_ophys_center.h5 +0 -3
  4. calcium/nejatbakhsh20/000541_sub-20190924-01_ses-20190924_ophys_im.h5 +2 -2
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  10. calcium/nejatbakhsh20/000541_sub-20190924-03_ses-20190924_ophys_im.h5 +2 -2
  11. calcium/nejatbakhsh20/000541_sub-20190925-01_ses-20190925_ophys_center.csv +0 -0
  12. calcium/nejatbakhsh20/000541_sub-20190925-01_ses-20190925_ophys_center.h5 +0 -3
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  20. calcium/nejatbakhsh20/000541_sub-20190928-03_ses-20190928_ophys_center.csv +0 -0
  21. calcium/nejatbakhsh20/000541_sub-20190928-03_ses-20190928_ophys_center.h5 +0 -3
  22. calcium/nejatbakhsh20/000541_sub-20190928-03_ses-20190928_ophys_im.h5 +2 -2
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  25. calcium/nejatbakhsh20/000541_sub-20190928-05_ses-20190928_ophys_im.h5 +2 -2
  26. calcium/nejatbakhsh20/000541_sub-20190928-07_ses-20190928_ophys_center.csv +0 -0
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  30. calcium/nejatbakhsh20/000541_sub-20190928-08_ses-20190928_ophys_center.h5 +0 -3
  31. calcium/nejatbakhsh20/000541_sub-20190928-08_ses-20190928_ophys_im.h5 +2 -2
  32. calcium/nejatbakhsh20/000541_sub-20190928-11_ses-20190928_ophys_center.csv +0 -0
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  34. calcium/nejatbakhsh20/000541_sub-20190928-11_ses-20190928_ophys_im.h5 +2 -2
  35. calcium/nejatbakhsh20/000541_sub-20190928-13_ses-20190928_ophys_center.csv +0 -0
  36. calcium/nejatbakhsh20/000541_sub-20190928-13_ses-20190928_ophys_center.h5 +0 -3
  37. calcium/nejatbakhsh20/000541_sub-20190928-13_ses-20190928_ophys_im.h5 +2 -2
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README.md CHANGED
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- |Imaging |Microscope| Dataset | Age | Avg Shape (xyzct) | Resolution (μm)| Avg # Nuclei| Notes |
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  |----------|----------|-----------|---------|--------------------|--------------|-------------|--|
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- | |Confocal |[Long'09](https://zenodo.org/records/5942575)|L1 | (1157,140,140)x28 | 0.12x0.12x0.12 | |63x oil lens|
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- | ExM |Confocal |in-house | L1 |(6200,1000,320)x2 | 0.32x0.32x0.4 | |20x lens, 3.3x expansion|
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- | ExM |Confocal |in-house | Adult|(12800,1000,320)x2 | 0.16x0.16x0.4 | |40x lens, 3.3x expansion|
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- |NeuroPAL |Confocal |[Yemini'21](https://dandiarchive.org/dandiset/000715)|Adult|(243,879,39,3)x10 | 0.21x0.21x0.75 | |
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- |NeuroPAL |Confocal |[Nejatbakhsh'20](https://dandiarchive.org/dandiset/000541)|Adult|(256,512,21,3)x21 | 0.21x0.21x1.5 | |
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- |NeuroPAL |Confocal |[Wen'20](https://dandiarchive.org/dandiset/000692)|Adult|(461,221,28,3)x9 | 0.32x0.32x1.5 | |
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- |Calcium |Confocal |[Nejatbakhsh'20](https://dandiarchive.org/dandiset/000541)|Adult|(?,?,?,183)x21 | ?x?x? | |
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- |Calcium |Confocal |[Wen'20](https://dandiarchive.org/dandiset/000692)|Adult|(?,?,?)x9 | 0.32x0.32x1.5 | |
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- |Calcium |Lightsheet|in-house |Adult|(?,?,?,6)x1 | 0.32x0.32x1.5 | |
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  ## Acknowledgement
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  - [Sprague et al. 2025. Unifying community whole-brain imaging datasets enables robust neuron identification and reveals determinants of neuron position in C. elegans](https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(24)00354-0)
 
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+ |Imaging |Microscope| Dataset | Age | Avg Shape (xyczt) | Resolution (μm)| Avg # Nuclei| Notes |
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  |----------|----------|-----------|---------|--------------------|--------------|-------------|--|
7
+ | |Confocal |[Long'09](https://zenodo.org/records/5942575)|L1 | (1157,140,1,140)x28 | 0.12x0.12x0.12 | |63x oil lens|
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+ | ExM |Confocal |in-house | Adult|(12800,1000,1,320)x2 | 0.16x0.16x0.4 | |40x lens, 3.3x expansion|
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+ |NeuroPAL |Confocal |[Yemini'21](https://dandiarchive.org/dandiset/000715)|Adult|(243,879,3,39)x10 | 0.21x0.21x0.75 | |
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+ |NeuroPAL |Confocal |[Nejatbakhsh'20](https://dandiarchive.org/dandiset/000541)|Adult|(256,512,3,21)x21 | 0.21x0.21x1.5 | |
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+ |NeuroPAL |Confocal |[Wen'20](https://dandiarchive.org/dandiset/000692)|Adult|(221,461,3,28)x9 | 0.32x0.32x1.5 | |
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+ |Calcium |Confocal |[Nejatbakhsh'20](https://dandiarchive.org/dandiset/000541)|Adult|(128,256,1,21,960)x21 | ?x?x? | |
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+ |Calcium |Confocal |[Wen'20](https://dandiarchive.org/dandiset/000692)|Adult|(?,?,1,?,?)x9 | 0.32x0.32x1.5 | |
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+ |Calcium |Lightsheet|in-house |Adult|(?,?,1,?,6)x1 | 0.32x0.32x1.5 | |
 
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  ## Acknowledgement
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  - [Sprague et al. 2025. Unifying community whole-brain imaging datasets enables robust neuron identification and reveals determinants of neuron position in C. elegans](https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(24)00354-0)
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