Dataset Preview
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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'0 7 160 43'}) and 1 missing columns ({'0 0 28 48'}).
This happened while the csv dataset builder was generating data using
hf://datasets/pytc/NucWorm/calcium/nejatbakhsh20/000541_sub-20190924-02_ses-20190924_ophys_center.csv (at revision a63d07204e42cd6163f146c0ac8d4b59fe22f326)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 623, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2241, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
0 7 160 43: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 383
to
{'0 0 28 48': Value(dtype='string', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1438, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1050, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 925, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1001, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1873, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'0 7 160 43'}) and 1 missing columns ({'0 0 28 48'}).
This happened while the csv dataset builder was generating data using
hf://datasets/pytc/NucWorm/calcium/nejatbakhsh20/000541_sub-20190924-02_ses-20190924_ophys_center.csv (at revision a63d07204e42cd6163f146c0ac8d4b59fe22f326)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
0 0 28 48
string |
|---|
0 2 40 51
|
0 3 20 61
|
0 3 26 62
|
0 3 77 62
|
0 4 23 57
|
0 4 41 56
|
0 4 45 59
|
0 4 49 47
|
0 4 49 52
|
0 4 63 53
|
0 4 85 68
|
0 4 87 57
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0 4 93 50
|
0 4 100 56
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0 4 101 52
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0 4 129 70
|
0 4 133 73
|
0 4 136 53
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0 4 147 80
|
0 4 148 79
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0 4 161 82
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0 5 6 25
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0 5 49 40
|
0 5 53 39
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0 5 59 59
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0 5 83 75
|
0 5 89 61
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0 5 92 65
|
0 5 92 71
|
0 5 92 79
|
0 5 98 64
|
0 5 98 69
|
0 5 105 65
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0 5 108 58
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0 5 116 59
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0 5 118 69
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0 5 120 71
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0 5 123 67
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0 5 127 72
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0 5 148 32
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0 5 166 84
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0 5 175 88
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0 5 207 116
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0 5 213 112
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0 5 220 108
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0 5 221 109
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0 6 22 83
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0 6 50 37
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0 6 60 66
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0 6 69 67
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0 6 91 39
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0 6 101 76
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0 6 105 75
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0 6 107 83
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0 6 113 83
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0 6 117 79
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0 6 139 74
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0 6 209 113
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0 6 212 110
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0 6 231 114
|
0 7 29 29
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0 7 39 70
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0 7 40 37
|
0 7 53 71
|
0 7 61 37
|
0 7 73 71
|
0 7 92 39
|
0 7 94 72
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0 7 103 76
|
0 7 111 71
|
0 7 113 68
|
0 7 115 88
|
0 7 124 92
|
0 7 132 93
|
0 7 144 113
|
0 7 165 113
|
0 7 191 118
|
0 7 194 117
|
0 7 234 116
|
0 8 31 32
|
0 8 63 36
|
0 8 83 77
|
0 8 86 34
|
0 8 97 36
|
0 8 103 82
|
0 8 106 87
|
0 8 112 83
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0 8 116 87
|
0 8 119 94
|
0 8 121 98
|
0 8 125 88
|
0 8 129 92
|
0 8 130 81
|
0 8 132 96
|
0 8 136 94
|
0 8 140 101
|
0 8 163 112
|
0 8 165 92
|
0 8 187 117
|
0 8 242 119
|
End of preview.
YAML Metadata
Warning:
empty or missing yaml metadata in repo card
(https://huggingface.co/docs/hub/datasets-cards)
nucWorm
| Imaging | Microscope | Dataset | Age | Avg Shape (xyczt) | Resolution (μm) | Avg # Nuclei | Notes |
|---|---|---|---|---|---|---|---|
| Confocal | Long'09 | L1 | (1157,140,1,140)x28 | 0.12x0.12x0.12 | 63x oil lens | ||
| ExM | Confocal | in-house | Adult | (12800,1000,1,320)x2 | 0.16x0.16x0.4 | 40x lens, 3.3x expansion | |
| NeuroPAL | Confocal | Yemini'21 | Adult | (243,879,3,39)x10 | 0.21x0.21x0.75 | ||
| NeuroPAL | Confocal | Nejatbakhsh'20 | Adult | (256,512,3,21)x21 | 0.21x0.21x1.5 | ||
| NeuroPAL | Confocal | Wen'20 | Adult | (221,461,3,28)x9 | 0.32x0.32x1.5 | ||
| Calcium | Confocal | Nejatbakhsh'20 | Adult | (128,256,1,21,960)x21 | ?x?x? | ||
| Calcium | Confocal | Wen'20 | Adult | (?,?,1,?,?)x9 | 0.32x0.32x1.5 | ||
| Calcium | Lightsheet | in-house | Adult | (?,?,1,?,6)x1 | 0.32x0.32x1.5 |
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