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wormid-l1 data

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  1. README.md +18 -3
  2. base/long09/C18G1_2L1_1_im.h5 +3 -0
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README.md CHANGED
@@ -1,3 +1,18 @@
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- ---
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- license: mit
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ # nucWorm
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+
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+
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+ |Imaging |Microscope| Dataset | Age | Avg Shape (xyzct) | Resolution (μm)| Avg # Nuclei| Notes |
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+ |----------|----------|-----------|---------|--------------------|--------------|-------------|--|
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+ | |Confocal |[Long'09](https://zenodo.org/records/5942575)|L1 | (1157,140,140)x28 | 0.12x0.12x0.12 | |63x oil lens|
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+ | ExM |Confocal |in-house | L1 |(6200,1000,320)x2 | 0.32x0.32x0.4 | |20x lens, 3.3x expansion|
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+ | ExM |Confocal |in-house | Adult|(12800,1000,320)x2 | 0.16x0.16x0.4 | |40x lens, 3.3x expansion|
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+ |NeuroPAL |Confocal |[Yemini'21](https://dandiarchive.org/dandiset/000715)|Adult|(243,879,39,3)x10 | 0.21x0.21x0.75 | |
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+ |NeuroPAL |Confocal |[Nejatbakhsh'20](https://dandiarchive.org/dandiset/000541)|Adult|(256,512,21,3)x21 | 0.21x0.21x1.5 | |
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+ |NeuroPAL |Confocal |[Wen'20](https://dandiarchive.org/dandiset/000692)|Adult|(461,221,28,3)x9 | 0.32x0.32x1.5 | |
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+ |Calcium |Confocal |[Nejatbakhsh'20](https://dandiarchive.org/dandiset/000541)|Adult|(?,?,?,183)x21 | ?x?x? | |
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+ |Calcium |Confocal |[Wen'20](https://dandiarchive.org/dandiset/000692)|Adult|(?,?,?)x9 | 0.32x0.32x1.5 | |
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+ |Calcium |Lightsheet|in-house |Adult|(?,?,?,6)x1 | 0.32x0.32x1.5 | |
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+
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+ ## Acknowledgement
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+ - [Sprague et al. 2025. Unifying community whole-brain imaging datasets enables robust neuron identification and reveals determinants of neuron position in C. elegans](https://www.cell.com/cell-reports-methods/fulltext/S2667-2375(24)00354-0)
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