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```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Princip-Glucose@17:38:49</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Endocrine disorders (240-259)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Glucose - UA (Group:UA-GLUC)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB48) Urinalysis\(LLB49) Urinalysis\UA-GLUC\</item_key>
<item_icon>FA</item_icon>
<tooltip>Labtests \ Urinalysis \ Urinalysis \ Glucose - UA (Group:UA-GLUC)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>EQ</value_operator>
<value_constraint>H</value_constraint>
<value_type>FLAG</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with Diabetes Mellitus as their principal diagnosis and have a positive result for glucose in their urinalysis test (UA-GLUC) in the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Principal Diagn@17:39:04</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Endocrine disorders (240-259)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with a principal diagnosis of Diabetes mellitus in the Endocrine disorders category (240-259) under Other endocrine gland diseases (250-259) within the Diagnoses section of the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Male-Coronav@12:43:00</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus infection, unspecified</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B25-B34) Othe~mcam\(B34) Viral in~t8uh\(B34.2) Corona~3546\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site
\ Coronavirus infection, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all male patients with a diagnosis of unspecified coronavirus infection. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Male-Coronav@12:43:41</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus infection, unspecified</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B25-B34) Othe~mcam\(B34) Viral in~t8uh\(B34.2) Corona~3546\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site
\ Coronavirus infection, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find male patients with a diagnosis of unspecified coronavirus infection at any time. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Living@11:39:35</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Living</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Vital Status\Living\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Vital Status \ Living</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who are currently living with no specific time frame or accuracy level applied, and the query should include only the 'Living' demographic variable from the 'Vital Status' category in the 'Demographics' section of the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Male-Co-Male-Co@12:10:09</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)Male-Coronav@12:43:50</item_name>
<item_key>masterid:1999</item_key>
<tooltip>Male-Coronav@12:43:50</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)Male-Coronav@12:43:00</item_name>
<item_key>masterid:1996</item_key>
<tooltip>Male-Coronav@12:43:00</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all male patients who have had a diagnosis of coronavirus at 12:43:50 and 12:43:00, regardless of the time they were diagnosed. The results should include both specific and non-specific coronavirus diagnoses with an accuracy scale of 100 and no synonyms should be included. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Endocri-Medicat@05:40:13</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Endocrine disorders</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Medications</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\</item_key>
<item_icon>FA</item_icon>
<tooltip>Medications</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients who have been diagnosed with endocrine disorders (ICD-9 codes 240-259) and have taken medications, with no specific timeframe or accuracy requirement. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name> 55-64-Disease@15:04:46</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 55-64 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>2</hlevel>
<item_name>Digestive system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Digestive system (520-579)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Digestive system</tooltip>
<class>ENC</class>
<constrain_by_date>
<date_from>1979-12-01T00:00:00.000-05:00</date_from>
<date_to>2020-05-19T00:00:00.000-05:00</date_to>
</constrain_by_date>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diseases of the respiratory system (j00-j99)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99)</tooltip>
<class>ENC</class>
<constrain_by_date>
<date_from>1979-12-01T00:00:00.000-05:00</date_from>
<date_to>2020-05-19T00:00:00.000-05:00</date_to>
</constrain_by_date>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients aged 5-64 years old with diagnoses related to the digestive system (ICD-9 codes 520-579) or diseases of the respiratory system (ICD-10 codes J00-J9) between the dates of December 1st, 1979 and May 19th, 2020. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essenti-Diabete@20:20:57</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension and diabetes mellitus in any time frame, with a high specificity and accuracy, and no inversion applied. The query will search for diagnoses of diseases of the circulatory system (ICD-9 codes I0-I9), specifically essential (primary) hypertension (I10), and endocrine, nutritional, and metabolic diseases (ICD-9 codes E0-E89), specifically diabetes mellitus (E08-E13). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Asthma, unspeci@10:09:46</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Asthma, unspecified</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-9) Asthma, unspecified\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Asthma, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of unspecified asthma in the respiratory system category, with a high level of specificity and accuracy, at any time during their medical history. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Princ-Medic-Disea@10:10:31</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Digestive system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Digestive system (520-579)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Digestive system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Digestive system (520-579)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Medications</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\</item_key>
<item_icon>FA</item_icon>
<tooltip>Medications</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diseases of the ear and mastoid process (h60-h95)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(H60-H95) Dise~nko6\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the ear and mastoid process (h60-h95)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find diagnoses related to the digestive system (codes 520-579) with a principal diagnosis and medications prescribed for those diagnoses, along with diseases of the ear and mastoid process (codes H60-H95) in the same patient. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>2019-nCoV acute@10:22:05</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>2019-nCoV acute respiratory disease (ICD10CM:U07.1)</item_name>
<item_key>\\ACT_COVID_V1\\ACT\\UMLS_C0031437\\SNOMED_3947185011\\UMLS_C0037088\\SNOMED_3947183016\\ICD10CM_U07.1\\</item_key>
<item_icon>LA</item_icon>
<tooltip>ACT Phenotype\\COVID-19 Related Terms\\Diagnosis\\Confirmed Case\\2019-nCoV acute respiratory disease (ICD10CM:U07.1)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with 2019-nCoV acute respiratory disease as coded in ICD10CM using the code U07.1. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essenti-Diabete@20:22:09</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with essential (primary) hypertension (ICD10-ICD9 codes I10-I15) and diabetes mellitus (ICD10-ICD9 codes E08-E13) at any time, with a high specificity scale of 100 and no inversion. The query is named "Essenti-Diabete@20:22:09" and consists of two panels: one for essential hypertension and one for diabetes mellitus. Each panel has a total of one item occurrence and the query timing is set to "ANY". |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Certain conditi@12:24:00</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Certain conditions originating in the perinatal period (p00-p96)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(P00-P96) Cert~6976\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain conditions originating in the perinatal period (p00-p96)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with certain conditions that originated in the perinatal period (from the 28th week of pregnancy to the 7th day after birth) by searching for diagnoses in the ICD-10 and ICD-9 classification system with codes ranging from P00 to P96. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essenti-Diabete@13:27:54</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension (I10-I15) and diabetes mellitus (E08-E13) in any encounter with 1000% accuracy. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diabetes mellit@22:05:31</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with a diagnosis of Diabetes Mellitus in the Endocrine Disorders category, specifically under the Other Endocrine Gland Diseases subcategory, using the i2b2 query builder with a specificity scale of 0 and a panel accuracy scale of 100, with a total of one item occurrence, and the panel timing set to ANY. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Left Ha-Beyond @10:37:55</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Left Handed</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Hand Orientation\Left Handed\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Hand Orientation \ Left Handed</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Beyond college</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Education\Beyond college\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Education \ Beyond college</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who are left-handed and have an education level beyond college. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>PATIENTSETFINIS@11:40:36</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>Patient Set for "Male-Coronav@12:43:50"Patient setFINISHED</item_name>
<item_key>patient_set_coll_id:3799</item_key>
<tooltip>Patient Set for "Male-Coronav@12:43:50"Patient setFINISHED</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find a query that identifies the patient set for a specific patient group called "Male-Coronav@12:43:50" that has been finished (FINISHED) in the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus as @11:41:35</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus as the cause of diseases classified elsewhere</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B95-B97) Bact~28iq\(B97) Viral ag~m3ak\(B97.2) Corona~1804\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Bacterial and viral infectious agents (b95-b97) \ Viral agents as the cause of diseases classified elsewhere
\ Coronavirus as the cause of diseases classified elsewhere</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all diagnoses related to certain infectious and parasitic diseases, specifically focusing on bacterial and viral infectious agents, with a particular emphasis on coronavirus as the cause of diseases classified elsewhere, with a high level of specificity and accuracy, and displaying the results in a panel with a total of one item occurrence. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essenti-Diabete@13:27:00</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension and diabetes mellitus (e08-e13) with any timing and 100% accuracy, using the ICD10_ICD9 code for diagnoses, diseases of the circulatory system (i0-i9), hypertensive diseases (i10-i15), and endocrine, nutritional, and metabolic diseases (e0-e89). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-Outpa@13:32:13</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Outpatient visit</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Visit type\Outpatient visit\</item_key>
<item_icon>LA</item_icon>
<tooltip>Visit Details \ Visit type \ Outpatient visit</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find outpatient visits where patients have been diagnosed with essential (primary) hypertension and diabetes mellitus. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-Outpa@13:33:04</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Outpatient visit</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Visit type\Outpatient visit\</item_key>
<item_icon>LA</item_icon>
<tooltip>Visit Details \ Visit type \ Outpatient visit</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension (ICD10 code I10) and diabetes mellitus (ICD10 code E08-E13) who have had an outpatient visit. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-D-Insulin@13:40:08</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)Essen-Diabe-Outpa@13:33:04</item_name>
<item_key>masterid:2014</item_key>
<tooltip>Essen-Diabe-Outpa@13:33:04</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Insulin</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME148) hormones\(LME150) antidiabetic agents\(LME152) insulin\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ hormones \ antidiabetic agents \ insulin</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with diabetes (Essen-Diabe-Outpa@13:33:04) and have also been prescribed insulin (Insulin) at any time (ANY). The specificity scale is set to 0, meaning the results will include all possible matches, and the accuracy scale is set to 100, indicating a high level of confidence in the results. The panel number for the diabetes diagnosis is 1, while the panel number for insulin prescription is 2. The total number of items in both panels is 1, and the invert flag is set to 0, meaning the query is not inverted. The hierarchy level for the diabetes diagnosis is 0, while the hierarchy level for insulin prescription is 4. The icon for insulin is FA, and the class is ENC. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus inf@09:19:25</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus infection, unspecified</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B25-B34) Othe~mcam\(B34) Viral in~t8uh\(B34.2) Corona~3546\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site
\ Coronavirus infection, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Coronavirus infection, unspecified within the ICD-10 and ICD-9 codes, specifically within the Diagnoses category (A0-B9), under Other viral diseases (B25-B34), and within the Viral infection of unspecified site (B34) subcategory. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essenti-Diabete@13:28:33</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension and diabetes mellitus, using the ICD-10 and ICD-9 coding systems, with an accuracy scale of 100 and any timing. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-PATIE@13:38:47</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>PATIENT:HIVE:1000000045</item_name>
<item_key>PATIENT:HIVE:1000000045</item_key>
<tooltip>PATIENT:HIVE:1000000045</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension (ICD10 code I10) and diabetes mellitus (ICD10 code E08-E13) who are also identified in the HIVE cohort (PATIENT:HIVE:100000045). The query has a specificity scale of 0, indicating that any occurrence of the conditions will be included, and the timing is set to ANY, meaning the conditions can have been diagnosed at any point in the patient's medical history. The accuracy scale for each panel is set to 100, indicating a high level of confidence in the results. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diabetes mellit@15:39:55</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of Diabetes mellitus (e08-e13) in the Endocrine, nutritional and metabolic diseases category (e00-e89) using the ICD-10 and ICD-9 coding systems, with any specificity and accuracy scale set to 100%, and the panel timing set to ANY. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Female@15:52:46</query_name>
<query_timing>SAMEVISIT</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>SAMEVISIT</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find female patients who have visited the clinic at the same time with a specificity scale of 0 and a panel accuracy scale of 100, and the query is named "Female@15:52:46". |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Femal- 18--Adven@15:53:44</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 18-34 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\18-34 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 18-34 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Advent Christian</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Religion\Advent Christian\</item_key>
<item_icon>MA</item_icon>
<tooltip>Demographic \ Religion \ Advent Christian</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find female patients aged 18-34 years old with the Advent Christian religion in their demographic information. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diagnoses@09:43:26</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database with any specificity and accuracy, including all occurrences of the Diagnoses item within the panel. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Female@15:52:14</query_name>
<query_timing>SAMEVISIT</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>SAMEVISIT</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all female patients who visited the clinic at the same time with a 100% accuracy scale for the panel and with no inversion, using the Demographics Gender Female encounter field in the i2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Female- 18-34@15:53:23</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 18-34 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\18-34 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 18-34 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find female patients between the ages of 18 and 34 years old. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Religion@15:54:20</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Religion</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Religion\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographic \ Religion</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with any religious affiliation recorded in their demographic information, regardless of specificity or timing, using the i2b2 query builder and displaying the results on panel 1 with 1000% accuracy. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-Perso@20:29:50</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)Person_#1000000045</item_name>
<item_key>masterid:3738</item_key>
<tooltip>Person_#1000000045</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension (ICD-10 code I10) and diabetes mellitus (ICD-10 code E08-E13) who have been seen by a specific provider (Person_#100000045) in the healthcare system. The search should be conducted with a high level of specificity and accuracy, considering any time frame (ANY). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Visit a-Visit a@17:33:37</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Visit at age 18 years old</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Age at visit\18-34 years old\18 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Visit Details \ Age at visit \ 18-34 years old \ 18 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Visit at age 19 years old</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Age at visit\18-34 years old\19 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Visit Details \ Age at visit \ 18-34 years old \ 19 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have had a visit at the age of 18 or 19 years old. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Circulatory sys@18:44:54</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all diagnoses related to the Circulatory system (ICD-9 codes 390-459) with a specificity scale of 0, accuracy scale of 100, and any time frame. The panel will be labeled "Circulatory sys@18:4:54" and the query will be named "Circulatory sys@18:4:54". The panel will include only one item with a hierarchical level of 2, and the icon will be FA. The query will not use synonyms. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-Vital@14:30:51</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Essential hypertension</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Hypertensive disease (401-405)\(401) Essential hypertension\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Hypertensive disease \ Essential hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Vital Status</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Vital Status\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographic \ Vital Status</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential hypertension, diabetes mellitus, and their vital status within the specified time frame. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Neopl-Expre-Labor@20:25:51</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Neoplasms</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Neoplasms (140-239)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Neoplasms</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>2</hlevel>
<item_name>Gender</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographic \ Gender</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Expression Profiles Data</item_name>
<item_key>\\i2b2_EXPR\i2b2\Expression Profiles Data\</item_key>
<item_icon>FA</item_icon>
<tooltip>Expression Profiles Data</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Laboratory Tests</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\</item_key>
<item_icon>FA</item_icon>
<tooltip>Labtests</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with neoplasms (cancer) diagnoses and their associated gender information, as well as their expression profiles and laboratory test results. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Admit-Male-Blood@20:30:33</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Infectious and parasitic diseases</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Infectious and parasitic diseases (001-139)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Infectious and parasitic diseases</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Infectious and parasitic diseases (001-139)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Blood Differential %</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB53) Hematology\(LLB55) Blood Differential %\</item_key>
<item_icon>FA</item_icon>
<tooltip>Labtests \ Hematology \ Blood Differential %</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients with a diagnosis of infectious and parasitic diseases who have had a blood differential test performed. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Skin -Gende-Proce@21:04:43</query_name>
<query_timing>SAMEVISIT</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>SAMEVISIT</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Skin diseases</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Skin diseases (680-709)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Skin diseases</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>SAMEVISIT</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Gender</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographic \ Gender</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>SAMEVISIT</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Procedures</item_name>
<item_key>\\i2b2_PROC\i2b2\Procedures\</item_key>
<item_icon>FA</item_icon>
<tooltip>Procedures</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with skin diseases diagnosed during the same visit as their gender and any procedures they had performed. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>new query@12:03:47</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>undefined</item_name>
<item_key>patient_set_coll_id:3799</item_key>
<tooltip>undefined</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been included in the patient set with collection id 3999, with no specific time frame or accuracy requirements, and I want to include all occurrences of these patients in the results. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault-Assault@13:59:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by crashing of motor vehicle</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y03) Assault~rwkc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by crashing of motor vehicle</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of diagnoses related to assault, specifically those involving crashes of motor vehicles, within the External Causes of Morbidity category (ICD10_ICD9 codes V0-Y9) in the ICD10_ICD9 section of the database, with a high level of specificity and accuracy. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essenti-Diabete@20:33:37</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension (ICD10-ICD9 code: I10) and diabetes mellitus (ICD10-ICD9 code: E08-E13) with any timing and 100% accuracy, and the panels are not inverted. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essenti-Diabete@20:34:54</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of Essential (primary) hypertension (ICD10-ICD9 code I10) and Diabetes mellitus (ICD10-ICD9 code E08-E13) at any time during their medical history, with a specificity scale of 0 and an accuracy scale of 100 for each panel. The query is named "Essenti-Diabete@20:34:54" and will include two panels, one for each condition. The first panel will focus on Essential (primary) hypertension under the category of Diseases of the circulatory system, while the second panel will focus on Diabetes mellitus under the category of Endocrine, nutritional and metabolic diseases. The query will not be inverted, meaning it will return patients who have both conditions, and the total number of occurrences for each item is set to 1. The query will return results for patients who have been diagnosed with both conditions. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Ischemic heart @10:15:57</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Ischemic heart disease diagnoses in the Circulatory system category within the i2b2 dataset, using the specificity scale of 0 and accuracy scale of 100, with the panel timing set to ANY and the query timing set to ANY. The query is named "Ischemic heart @10:15:57" and the item is not a synonym. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Psychotherapeut@13:23:14</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Psychotherapeutic agents</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME203) psychotherapeutic agents\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ psychotherapeutic agents</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients who have been prescribed psychotherapeutic agents at any time during their medical history, with a high level of specificity and accuracy, using the i2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus as @13:24:19</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus as the cause of diseases classified elsewhere</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B95-B97) Bact~28iq\(B97) Viral ag~m3ak\(B97.2) Corona~1804\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Bacterial and viral infectious agents (b95-b97) \ Viral agents as the cause of diseases classified elsewhere
\ Coronavirus as the cause of diseases classified elsewhere</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find diagnoses of diseases caused by Coronavirus, classified under the ICD10_ICD9 codes (A0-B99) Cert~ugmm (B95-B97) Bact~28iq (B97) Viral agents as the cause of diseases classified elsewhere (B97.2) Coronavirus as the cause of diseases classified elsewhere, with a specificity scale of 0, panel timing of ANY, panel accuracy scale of 100, and a single item occurrence in the panel. The query will be named "Coronavirus as the cause of diseases classified elsewhere" and has an icon of FA. This query is not a synonym and has a hierarchical level of 4. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-patie@20:48:11</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)patients</item_name>
<item_key>masterid:3771</item_key>
<tooltip>patients</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with Essential (primary) hypertension (I10) and Diabetes mellitus (E08-E13) at any time in their medical history, with a high level of specificity (100), and display the results in a panel format with the disease categories being "Diagnoses" and "Endocrine, nutritional and metabolic diseases." |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault-Assault@13:54:20</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by blunt object</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y00) Assault~ymnk\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by blunt object</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of diagnoses related to assault, including assault by blunt object, from the ICD10_ICD9 coding system within the External causes of morbidity (v0-y9) category, with a specificity scale of 0 and a panel accuracy scale of 100, with no inversion, and considering all time periods (ANY). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault-Assault@13:58:32</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by crashing of motor vehicle</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y03) Assault~rwkc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by crashing of motor vehicle</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of assault, including those resulting from a motor vehicle crash, using the ICD-10 and ICD-9 coding system, with a high level of specificity and accuracy, regardless of the timing of the diagnosis. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Psychot-Externa@13:49:28</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Psychotherapeutic agents</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME203) psychotherapeutic agents\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ psychotherapeutic agents</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>External causes of morbidity (v00-y99)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients who have been prescribed Psychotherapeutic agents (medications) and have an ICD10 diagnosis code related to External causes of morbidity (v0-y9). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault (x92-y0@13:53:08</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of diagnoses related to external causes of morbidity, specifically focusing on assault cases (ICD-9 codes X92-Y08) in the ICD-10 coding system, with a specificity scale of 0 and accuracy scale of 100, considering any timing, and excluding synonyms. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault-Assault@13:59:05</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by blunt object</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y00) Assault~ymnk\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by blunt object</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of assault-related diagnoses (ICD10-ICD9 codes X92-Y08) in the database, including assault by blunt object (Y00), with a specificity scale of 0 and a high accuracy scale of 100. The query should search for any time frame and not be inverted. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-PATIE@20:49:10</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>PATIENT:HIVE:1000000045</item_name>
<item_key>PATIENT:HIVE:1000000045</item_key>
<tooltip>PATIENT:HIVE:1000000045</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension and diabetes mellitus, specifically looking at the ICD-9 and ICD-10 codes for these conditions, and also include a specific patient ID, PATIENT:HIVE:100000045, in the search. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diabetes mellit@13:54:51</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of Diabetes mellitus (ICD10 code E08-E13) and Essential (primary) hypertension (ICD10 code I10) within the specified time frame (ANY). The specificity scale is set to 0, meaning all cases meeting the criteria will be included, and the panel accuracy scale is set to 100, indicating a high level of confidence in the results. The panel is not inverted, and there is a total of 1 occurrence of this combination of conditions. The query is named "Diabetes mellitus" and has a timing set to ANY. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault (x92-y0@14:27:24</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of diagnoses related to external causes of morbidity, specifically focusing on assault cases, as categorized by the ICD-10-CM code X92-Y08, within the given time frame, using the highest level of specificity and accuracy, and with no inversion applied. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault by blun@14:28:44</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by blunt object</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y00) Assault~ymnk\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by blunt object</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with assault by blunt object (ICD-9 code Y00) in the external causes of morbidity (codes V0-Y9) section of their medical records, with a specificity scale of 0, accuracy scale of 100, and no inversion of the search criteria. This query will search for any occurrence of this diagnosis within the patient's medical history. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault by cras@14:29:44</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by crashing of motor vehicle</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y03) Assault~rwkc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by crashing of motor vehicle</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with an assault resulting from a crashing of a motor vehicle, using the ICD10-ICD9 code range (V0-Y9) for external causes of morbidity and (X92-Y08) for assault, specifically (Y03) for assault by crashing of a motor vehicle, with a specificity scale of 0, a total of 1 item occurrence, and a panel accuracy scale of 100. The panel timing and query timing are set to ANY, and the panel is not inverted. The class of this query is ENC, and it is not a synonym. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>VITAMIN B12 UNS@14:36:49</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>VITAMIN B12 UNSAT BIND CAPA (LOINC:2171-7)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB31) Anemia Related Studies\B12USAT\LOINC:2171-7\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Anemia Related Studies \ B12 Unsaturated Binding (Group:B12USAT) \ Vitamin b12 unsat bind capa (LOINC:2171-7)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>EQ</value_operator>
<value_constraint>@</value_constraint>
<value_type>FLAG</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Vitamin B12 Unsaturated Binding Capacity (LOINC:2171-7) test results from the Anemia Related Studies panel in the Chemistry section of the Laboratory Tests, with a specificity scale of 0 and accuracy scale of 100, for any time period. The query is named "VITAMIN B12 UNS@14:36:49" and is not a synonym for another item. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-insul@20:50:18</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)insulin usage@20:19:05</item_name>
<item_key>masterid:3764</item_key>
<tooltip>insulin usage@20:19:05</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension, diabetes mellitus, and who have a record of insulin usage within the specified time frame. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>VITAMIN B12 UNS@14:36:30</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>VITAMIN B12 UNSAT BIND CAPA (LOINC:2171-7)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB31) Anemia Related Studies\B12USAT\LOINC:2171-7\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Anemia Related Studies \ B12 Unsaturated Binding (Group:B12USAT) \ Vitamin b12 unsat bind capa (LOINC:2171-7)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>EQ</value_operator>
<value_constraint>@</value_constraint>
<value_type>FLAG</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of the Vitamin B12 Unsaturated Binding Capacity (LOINC: 2171-7) laboratory test result in the i2b2 database, with a specificity scale of 0 and a total item occurrence of 1, for any time period, with a panel accuracy scale of 100 and the value constrained by the 'equal to' operator, using the 'ANY' timing and with the class set to ENC. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus as @14:44:48</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus as the cause of diseases classified elsewhere</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B95-B97) Bact~28iq\(B97) Viral ag~m3ak\(B97.2) Corona~1804\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Bacterial and viral infectious agents (b95-b97) \ Viral agents as the cause of diseases classified elsewhere
\ Coronavirus as the cause of diseases classified elsewhere</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances where Coronavirus is listed as the cause of diseases classified elsewhere in the ICD-10 and ICD-9 diagnosis codes, specifically within the range of B95-B97 for bacterial and viral infectious agents, and B97.2 for viral agents as the cause of diseases classified elsewhere. The query will be named "Coronavirus as the cause of diseases classified elsewhere" and the specificity scale is set to 0, meaning that any occurrence of the term will be included. The timing is set to ANY, indicating that the query is not limited to a specific time period. The panel has one item with an accuracy scale of 100 and the total number of item occurrences is set to 1. The panel is not inverted, and the tooltip provides further information on the query's classification within the ICD coding system. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus inf@14:45:10</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus infection, unspecified</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B25-B34) Othe~mcam\(B34) Viral in~t8uh\(B34.2) Corona~3546\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site
\ Coronavirus infection, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Coronavirus infection, unspecified, with any timing, at 1000% accuracy, and with a specificity scale of 0, using the ICD-10-CM code B34.2 (Viral infection of unspecified site, Coronavirus infection, unspecified) in the Diagnoses category of the Certain infectious and parasitic diseases group (A0-B9) and the Other viral diseases group (B25-B34). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-insul@20:50:55</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)insulin usage@20:19:05</item_name>
<item_key>masterid:3764</item_key>
<tooltip>insulin usage@20:19:05</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension, diabetes mellitus, and who have used insulin within the last 20 hours and 19 minutes. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Ischemi-Male@10:16:24</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all male patients with a diagnosis of ischemic heart disease in the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Pneumonia due t@14:45:26</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Pneumonia due to sars-associated coronavirus</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J09-J18) Infl~7z2l\(J12) Viral pn~6io0\(J12.8) Other~euj2\(J12.81) Pneum~f4r6\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Influenza and pneumonia (j09-j18) \ Viral pneumonia, not elsewhere classified
\ Other viral pneumonia \ Pneumonia due to sars-associated coronavirus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of Pneumonia due to SARS-associated Coronavirus, with any specificity and timing, and the panel will have a high accuracy scale of 100, and the query will have only one item occurrence. The item will be classified as Encounter and will not be a synonym. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-insul@20:52:43</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)insulin usage</item_name>
<item_key>masterid:3481</item_key>
<tooltip>insulin usage</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension, diabetes mellitus, and insulin usage. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-Takin@20:55:39</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)Taking Insulin</item_name>
<item_key>masterid:3728</item_key>
<tooltip>Taking Insulin</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension and diabetes mellitus, who are also currently taking insulin. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diagnoses@09:44:37</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database with a high level of specificity and accuracy, regardless of the time they were made, and without inverting the results. The query should display the diagnoses in a panel with a single item, labeled as "Diagnoses", using the Encounter class and an icon of "FA". |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Livin- 18--Princ@15:12:16</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Living</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Vital Status\Living\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Vital Status \ Living</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 18-34 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\18-34 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 18-34 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name> 35-44 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\35-44 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 35-44 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name> 45-54 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\45-54 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 45-54 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>55 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\55 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 55 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>56 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\56 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 56 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>57 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\57 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 57 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>58 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\58 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 58 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>59 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\59 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 59 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>60 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\60 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 60 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Acute pancreatitis</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Digestive system (520-579)\Other diseases of digestive system (570-579)\(577) Diseases of pancreas\(577-0) Acute pancreatitis\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Digestive system \ Other diseases of digestive system \ Diseases of pancreas \ Acute pancreatitis</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Digestive system (520-579)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with the principal diagnosis of acute pancreatitis who are 18-34, 35-44, or 5-64 years old. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Delgado, Luisa,@16:00:48</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Delgado, Luisa, MD</item_name>
<item_key>\\i2b2_PROV\i2b2\Providers\Medicine\Primary Care\Delgado, Luisa, MD\</item_key>
<item_icon>LA</item_icon>
<tooltip>i2b2 \ Providers \ Medicine \ Primary Care \ Delgado, Luisa, MD</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>2</hlevel>
<item_name>Psychotherapeutic agents</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME203) psychotherapeutic agents\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ psychotherapeutic agents</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances where the provider "Delgado, Luisa, MD" has prescribed or been associated with the use of "Psychotherapeutic agents" medications, at any time, with a high level of specificity and accuracy. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diabetes mellit@13:52:49</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with a diagnosis of diabetes mellitus in the Endocrine disorders category, specifically within the Other endocrine gland diseases subcategory. The query has a specificity scale of 0 and an accuracy scale of 100, meaning it is broadly searching for this condition without being too specific or narrow. The timing is set to ANY, indicating that the diagnosis could have occurred at any point in the patient's medical history. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Pneumonia due t@17:28:05</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Pneumonia due to sars-associated coronavirus</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J09-J18) Infl~7z2l\(J12) Viral pn~6io0\(J12.8) Other~euj2\(J12.81) Pneum~f4r6\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Influenza and pneumonia (j09-j18) \ Viral pneumonia, not elsewhere classified
\ Other viral pneumonia \ Pneumonia due to sars-associated coronavirus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of "Pneumonia due to sars-associated coronavirus" in the ICD10_ICD9 diagnoses category for respiratory system diseases, specifically within the subcategory of influenza and pneumonia, and more specifically, under the classification of other viral pneumonia not otherwise classified. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essen-Diabe-Takin@20:54:50</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Diabetes mellitus (e08-e13)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(E00-E89) Endo~c157\(E08-E13) Diab~1uxc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine, nutritional and metabolic diseases (e00-e89) \ Diabetes mellitus (e08-e13)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery)Taking Insulin</item_name>
<item_key>masterid:3728</item_key>
<tooltip>Taking Insulin</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients with a diagnosis of essential (primary) hypertension (ICD10-ICD9 code: I10) and diabetes mellitus (ICD10-ICD9 code: E08-E13) who are currently taking insulin (masterid: 328) at any point in time. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault by cras@16:35:15</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by crashing of motor vehicle</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y03) Assault~rwkc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by crashing of motor vehicle</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Assault by blunt object</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y00) Assault~ymnk\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by blunt object</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with either "Assault by crashing of motor vehicle" or "Assault by blunt object" from the ICD10_ICD9 codes (V0-Y9) External causes of morbidity (x92-y08) Assault (Y03) and (Y00) Assault by blunt object, with a specificity scale of 0 and an accuracy scale of 100. The query timing is set to ANY, meaning it can be applied to any time period, and the panel timing is also set to ANY, indicating that all panels will be considered. The panel has a total of two items, and the query is not inverted. The class is set to ENC, which stands for "Encounter". This query will return patients who have had these diagnoses at any point in their medical history. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>External causes@16:35:27</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>External causes of morbidity (v00-y99)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of external causes of morbidity (v0-y9) in the ICD10_ICD9 Diagnoses table, with a specificity scale of 0, a panel timing of ANY, and a panel accuracy scale of 100, displaying the results in panel 1 of the query. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault by blun@16:38:19</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by blunt object</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y00) Assault~ymnk\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by blunt object</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of diagnoses related to external causes of morbidity, specifically cases of assault by blunt object in the ICD10_ICD9 classification system. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault by cras@16:39:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by crashing of motor vehicle</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y03) Assault~rwkc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by crashing of motor vehicle</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all cases where a patient has been diagnosed with an assault resulting from a crashing of a motor vehicle, using the ICD-10 or ICD-9 coding system, within any time frame, with a specificity scale of 0 and a panel accuracy scale of 100, and the panel should be inverted. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diagnoses@09:44:45</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database, with a specificity scale of 0 and a panel accuracy scale of 100, considering any timing, and with the panel number set to 1. The query is not inverted, and there is only one item being searched, which is the "Diagnoses" field with the key "\\i2b2_DIAG\i2b2\Diagnoses\". The class is ENC and it is not a synonym. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus inf@16:46:27</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus infection, unspecified</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B25-B34) Othe~mcam\(B34) Viral in~t8uh\(B34.2) Corona~3546\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site
\ Coronavirus infection, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus as the cause of diseases classified elsewhere</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B95-B97) Bact~28iq\(B97) Viral ag~m3ak\(B97.2) Corona~1804\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Bacterial and viral infectious agents (b95-b97) \ Viral agents as the cause of diseases classified elsewhere
\ Coronavirus as the cause of diseases classified elsewhere</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Coronavirus infection, unspecified and Coronavirus as the cause of diseases classified elsewhere in the Diagnoses section, specifically under Certain infectious and parasitic diseases (A0-B9) and Viral infections of unspecified site (B34.2), and Bacterial and viral infectious agents (B95-B97) and Viral agents as the cause of diseases classified elsewhere (B97.2), with a specificity scale of 0 and an accuracy scale of 100, with no inversion of the panel. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diabetes mellit@13:51:18</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with a diagnosis of Diabetes mellitus, with no specific time frame constraint, using the highest level of specificity (1000% accuracy) and considering only the first panel of the query, which includes the specific category of Endocrine disorders, specifically Other endocrine gland diseases, and within that, Diabetes mellitus. The query will not be inverted and will only consider a single occurrence of the condition. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus as @17:27:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus as the cause of diseases classified elsewhere</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B95-B97) Bact~28iq\(B97) Viral ag~m3ak\(B97.2) Corona~1804\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Bacterial and viral infectious agents (b95-b97) \ Viral agents as the cause of diseases classified elsewhere
\ Coronavirus as the cause of diseases classified elsewhere</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with a diagnosis of diseases caused by coronavirus, classified under ICD-10 code B97.2, within the category of Bacterial and Viral Infectious Agents as the cause of diseases elsewhere, using the i2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>BASE EXCESS (LO@09:30:03</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>BASE EXCESS (LOINC:1925-7)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB24) Blood Gases\ABASEX\LOINC:1925-7\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Blood Gases \ Arterial HCO3 (Group:ABASEX) \ BASE EXCESS (LOINC:1925-7)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>LT</value_operator>
<value_constraint>400</value_constraint>
<value_unit_of_measure>meq/l</value_unit_of_measure>
<value_type>NUMBER</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients who have had an arterial blood gas test with a base excess result (LOINC code: 1925-7) that is less than 40 meq/l at any time during their medical record. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Livin- 18--Princ@15:29:37</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Living</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Vital Status\Living\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Vital Status \ Living</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 18-34 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\18-34 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 18-34 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name> 35-44 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\35-44 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 35-44 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name> 45-54 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\45-54 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 45-54 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>55 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\55 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 55 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>56 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\56 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 56 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>57 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\57 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 57 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>58 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\58 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 58 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>59 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\59 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 59 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>60 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\60 years old\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old \ 60 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute pancreatitis</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(K00-K94) Dise~rl1r\(K80-K87) Diso~5bj3\(K85) Acute pa~es5c\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the digestive system (k00-k94) \ Disorders of gallbladder, biliary tract and pancreas (k80-k87) \ Acute pancreatitis</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Principal Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(K00-K94) Dise~rl1r\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who are between the ages of 18-64 and have a diagnosis of acute pancreatitis as a principal diagnosis. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diabete-Huchard@13:58:00</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Huchard's disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Hypertensive disease (401-405)\(401) Essential hypertension\(401-9) Unspecified essential hyp~\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Hypertensive disease \ Essential hypertension \ Unspecified essential hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find patients who have been diagnosed with Diabetes mellitus and also have a history of Huchard's disease (Unspecified essential hypertension). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus inf@17:27:57</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus infection, unspecified</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B25-B34) Othe~mcam\(B34) Viral in~t8uh\(B34.2) Corona~3546\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site
\ Coronavirus infection, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of "Coronavirus infection, unspecified" within the ICD10_ICD9 Diagnoses category, specifically within the "Certain infectious and parasitic diseases (a0-b9)", "Other viral diseases (b25-b34)", and "Viral infection of unspecified site" subcategories. The query is set to search for any timing and has a specificity scale of 0, panel timing of ANY, accuracy scale of 100, and is not inverted. It is a single-item panel with a hlevel of 4, and the class is ENC. The tooltip provided is "Diagnoses \ Certain infectious and parasitic diseases (a0-b9) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site \ Coronavirus infection, unspecified". This query is not a synonym. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus as @17:31:01</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus as the cause of diseases classified elsewhere</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B95-B97) Bact~28iq\(B97) Viral ag~m3ak\(B97.2) Corona~1804\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Bacterial and viral infectious agents (b95-b97) \ Viral agents as the cause of diseases classified elsewhere
\ Coronavirus as the cause of diseases classified elsewhere</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with a diagnosis of diseases caused by Coronavirus, classified under the ICD-10 or ICD-9 codes B97.2, B97, or B95-B97, specifically within the category of viral agents as the cause of diseases classified elsewhere. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Coronavirus inf@17:32:06</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Coronavirus infection, unspecified</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(A00-B99) Cert~ugmm\(B25-B34) Othe~mcam\(B34) Viral in~t8uh\(B34.2) Corona~3546\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Certain infectious and parasitic diseases (a00-b99) \ Other viral diseases (b25-b34) \ Viral infection of unspecified site
\ Coronavirus infection, unspecified</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients who have been diagnosed with Coronavirus infection, unspecified, at any time, with a high level of specificity and accuracy. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>BASE EXCESS (LO@09:31:32</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>BASE EXCESS (LOINC:1925-7)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB24) Blood Gases\ABASEX\LOINC:1925-7\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Blood Gases \ Arterial HCO3 (Group:ABASEX) \ BASE EXCESS (LOINC:1925-7)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>LT</value_operator>
<value_constraint>400</value_constraint>
<value_unit_of_measure>meq/l</value_unit_of_measure>
<value_type>NUMBER</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances where the Arterial HCO3 (BASE EXCESS) blood test result was lower than 40 meq/l within the specified time frame. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Psychotherapeut@18:59:54</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Psychotherapeutic agents</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME203) psychotherapeutic agents\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ psychotherapeutic agents</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find any psychotherapeutic agents prescribed to patients in the i2b2 database, with a specificity scale of 0, a panel timing of ANY, and a panel accuracy scale of 100, using the query_name "Psychotherapeut@18:59:54" and panel number 1. The query will be based on the cell level 2 hierarchy with the item_name "Psychotherapeutic agents" and the item_key "\\i2b2_MEDS\i2b2\Medications\MUL\(LME203) psychotherapeutic agents". The icon for this query will be FA, and it is not a synonym. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Assault (x92-y0@19:11:24</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Assault (x92-y08) diagnoses in the ICD10-ICD9 codes, specifically within the range of V0-Y9 for External causes of morbidity, with a specificity scale of 0, accuracy scale of 100, and any timing. The panel number is 1, and the query name is Assault (x92-y0@19:1:24. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>BASE EXCESS (LO@09:34:26</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>BASE EXCESS (LOINC:1925-7)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB24) Blood Gases\ABASEX\LOINC:1925-7\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Blood Gases \ Arterial HCO3 (Group:ABASEX) \ BASE EXCESS (LOINC:1925-7)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>LT</value_operator>
<value_constraint>8</value_constraint>
<value_unit_of_measure>meq/l</value_unit_of_measure>
<value_type>NUMBER</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients who have had a BASE EXCESS (LOINC:1925-7) value of less than 8 meq/l in their arterial blood gas tests within any time frame. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Admit Diagnosis@17:36:31</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Metabolic and immunity disorders</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Metabolic and immunity disorders (270-279)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Metabolic and immunity disorders</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Metabolic and immunity disorders (270-279)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>2</hlevel>
<item_name>Metabolic and immunity disorders</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Metabolic and immunity disorders (270-279)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Metabolic and immunity disorders</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Metabolic and immunity disorders (270-279)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Metabolic and immunity disorders (ICD codes 270-279) that have been recorded as either the Admit Diagnosis or the Principal Diagnosis in the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Anemia Related @22:14:42</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Anemia Related Studies</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB31) Anemia Related Studies\</item_key>
<item_icon>FA</item_icon>
<tooltip>Labtests \ Chemistry \ Anemia Related Studies</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of Anemia Related Studies in the Chemistry section of the Laboratory Tests data, with a specificity scale of 0 and accuracy scale of 100, within any time frame. The query should be named "Anemia Related @222:14:42" and the panel number should be set to 1. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Externa-Assault@19:11:02</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>External causes of morbidity (v00-y99)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of external causes of morbidity (v0-y9) and specifically cases of assault (x92-y08) within the ICD10_ICD9 diagnoses category. This query has a specificity scale of 0, meaning that it is not restricted to a specific time period, and a panel accuracy scale of 100, indicating high accuracy. The query is named "Externa-Assault@19:1:02" and includes two panels, with the first panel focused on external causes of morbidity (v0-y9) and the second panel focused on assault (x92-y08). The tooltip provided for the first panel is "Diagnoses \ External causes of morbidity (v0-y9)" and the tooltip for the second panel is "Diagnoses \ External causes of morbidity (v0-y9) \ Assault (x92-y08)". Both panels have an invert value of 0, meaning they are not inverted or excluded from the query. The class for both panels is "ENC" |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Exter-Assau-Assau@19:11:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>External causes of morbidity (v00-y99)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Assault by blunt object</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y00) Assault~ymnk\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by blunt object</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Assault by crashing of motor vehicle</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\(Y03) Assault~rwkc\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08) \ Assault by crashing of motor vehicle</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find diagnoses related to external causes of morbidity (v0-y9), specifically focusing on assault (x92-y08) and its subcategories, including assault by blunt object (Y00) and assault by crashing of motor vehicle (Y03). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Externa-Assault@19:13:04</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>External causes of morbidity (v00-y99)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Assault (x92-y08)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(V00-Y99) Exte~2k58\(X92-Y08) Assa~4b66\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ External causes of morbidity (v00-y99) \ Assault (x92-y08)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients who have been diagnosed with external causes of morbidity, specifically assault (ICD codes X92-Y08) in their medical records, with no specific time frame or accuracy scale applied, and categorized under the "External causes of morbidity (v0-y9)" and "Assault (x92-y08)" panels. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>FACTOR VII (LOI@17:02:01</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>FACTOR VII (LOINC:3198-9)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB6) Coagulation\(LLB8) Coagulation Factor Studies\FVII\LOINC:3198-9\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Coagulation \ Coagulation Factor Studies \ Factor VII (Group:FVII) \ Factor vii (LOINC:3198-9)</tooltip>
<class>ENC</class>
<constrain_by_date>
<date_from>1979-12-01T00:00:00.000-05:00</date_from>
<date_to>2020-07-22T00:00:00.000-05:00</date_to>
</constrain_by_date>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all instances of the Factor VII (LOINC:3198-9) laboratory test results within the specified date range (1979-12-01T00:00:00.00-05:00 to 2020-07-2T00:00:00.00-05:00) with a specificity scale of 0 and accuracy scale of 100, using the panel number 1, and displaying the results in the Coagulation Factor Studies section under the Labtests category in the i2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Diagnoses@09:46:33</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database with any specificity and accuracy, for any time period, using the Diagnoses panel with the class ENC, and the item Diagnoses at the hlevel 1, with a total of 1 item occurrence. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns4:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/">
<query_name>Essential (prim@13:57:07</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Essential (primary) hypertension</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I10-I15) Hype~5igm\(I10) Essentia~sbwm\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Hypertensive diseases (i10-i15) \ Essential (primary) hypertension</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns4:query_definition>
``` |
I want to find all patients with a diagnosis of essential (primary) hypertension, which is a type of high blood pressure that has no identifiable cause, using the ICD-10 and ICD-9 codes related to hypertensive diseases within the circulatory system category. |
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