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```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabete-Pain in@14:44:50</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Pain in limb</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Musculoskeletal and connective tissue (710-739)\Rheumatism, excluding the back (725-729)\(729) Other disorders of soft tis~\(729-5) Pain in limb\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Musculoskeletal and connective tissue \ Rheumatism, excluding the back \ Other disorders of soft tissues \ Pain in limb</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of Diabetes mellitus and who have experienced pain in their limbs at any time during their medical history, with a specificity scale of 0 and an accuracy scale of 100 for each panel, and the query will search for these conditions in the i2b2 database using the provided keys. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Left Handed@11:22:15</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Left Handed</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Hand Orientation\Left Handed\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Hand Orientation \ Left Handed</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>2</hlevel>
<item_name>Digestive system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Digestive system (520-579)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Digestive system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Digestive system (520-579)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients who are female, left-handed, and have a digestive system diagnosis as their admit diagnosis. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name> 10-17 years o@12:49:48</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 10-17 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\10-17 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 10-17 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>Cleft palate with cleft lip</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Congenital anomalies (740-759)\(749) Cleft palate and cleft lip\(749-2) Cleft palate with cleft l~\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Congenital anomalies \ Cleft palate and cleft lip \ Cleft palate with cleft lip</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Secondary Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Secondary Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Congenital anomalies (740-759)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Mental retardation</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Mental Disorders (290-319)\Mental retardation (317-319)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Mental Disorders \ Mental retardation</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Mental Disorders (290-319)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find male patients aged 10-17 years old with a secondary diagnosis of cleft palate with cleft lip and an admit diagnosis of mental retardation. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Ischemi-Male@15:30:32</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients with a diagnosis of ischemic heart disease in the circulatory system category. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Acute@13:14:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Acute</item_name>
<item_key>masterid:29561</item_key>
<tooltip>Acute respiratory infections [7-25-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of acute respiratory infections, with no specific timing constraint, using a high level of accuracy, and no synonyms. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>(t) Circulatory sysConditions in t@14:38:51</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<subquery_constraint>
<first_query>
<query_id>Observation A</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>FIRST</aggregate_operator>
</first_query>
<operator>EQUAL</operator>
<second_query>
<query_id>Observation B</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>FIRST</aggregate_operator>
</second_query>
</subquery_constraint>
<subquery>
<query_id>Observation A</query_id>
<query_type>EVENT</query_type>
<query_name>Observation A</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
<subquery>
<query_id>Observation B</query_id>
<query_type>EVENT</query_type>
<query_name>Observation B</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Conditions in the perinatal period</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Conditions in the perinatal period (760-779)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Conditions in the perinatal period</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
</ns3:query_definition>
``` |
I want to find all instances where a patient has been diagnosed with a condition related to the circulatory system (ICD-9 codes 390-459) and has also been diagnosed with a condition related to the perinatal period (ICD-9 codes 760-79) at the same time or during the same encounter. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Mental Disorders-Skin diseases@11:21:24@13:9:44</item_name>
<item_key>masterid:29578</item_key>
<tooltip>Mental Disorders-Skin diseases@11:21:24@13:9:44 [7-26-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all records where a patient has been diagnosed with both mental disorders and skin diseases, with a specificity scale of 0 and a panel accuracy scale of 10, and the query should include any time frame. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Ische-Male-Nutri@15:31:35</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Nutritional products</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME195) nutritional products\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ nutritional products</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients with a diagnosis of ischemic heart disease who have been prescribed nutritional products. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system@14:43:30</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses related to the circulatory system (ICD codes 390-459) with any timing, 100% accuracy, and a specificity scale of 0, constrained by the "Admit Diagnosis" modifier, with a single occurrence, and classified as an Encounter (ENC). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:16</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29</item_name>
<item_key>masterid:29579</item_key>
<tooltip>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29 [7-26-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Mental Disorders-Skin diseases@11:21:24@13:9:44</item_name>
<item_key>masterid:29578</item_key>
<tooltip>Mental Disorders-Skin diseases@11:21:24@13:9:44 [7-26-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find a query that looks for the co-occurrence of mental disorders and skin diseases in patient records, specifically focusing on any records where these conditions were diagnosed within a certain time frame (1:21:24, 13:9:44, and 13:1:29) and with a high level of accuracy (100). This query is composed of two panels, the first one searching for the combination of mental disorders and skin diseases, and the second panel searching for mental disorders and skin diseases with a specific timing (1:21:24 and 13:9:4). The results of this query will include patients who have been diagnosed with both mental disorders and skin diseases within the specified time frames. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29</item_name>
<item_key>masterid:29579</item_key>
<tooltip>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29 [7-26-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a history of both mental disorders and skin diseases, specifically those who have been diagnosed with mental disorders within the past 21 hours, 13 days, 9 hours, and 44 minutes, and skin diseases within the past 13 hours, 1 day, 29 minutes. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:29@13:27:35</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:29</item_name>
<item_key>masterid:29582</item_key>
<tooltip>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:29 [7-26-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a history of mental disorders and skin diseases, specifically within the given time frames of 1:21:24, 13:9:44, 13:1:29, and 13:26:29, using the i2b2 query builder with a specificity scale of 0 and a panel accuracy scale of 10, where the query timing is set to ANY and the total number of item occurrences is 1. The query is not a synonym and the invert flag is set to 0. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Female- 18-34@13:29:26</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 18-34 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\18-34 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 18-34 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find female patients aged 18-34 years old. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mild intermittent asthma with status asthmaticus@14:48:45</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Mild intermittent asthma with status asthmaticus</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J45) Asthma\(J45.2) Mild i~rq96\(J45.22) Mild~o47u\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ Asthma \ Mild intermittent asthma
\ Mild intermittent asthma with status asthmaticus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients diagnosed with mild intermittent asthma with status asthmaticus, at any time, with a high level of specificity (1000%) and accuracy, and using the ICD10_ICD9 coding system for diseases of the respiratory system, specifically chronic lower respiratory diseases, asthma, and mild intermittent asthma with status asthmaticus. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Admit Diagnosis@14:50:56</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>chronic obstructive asthma</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J44) Other ch~vw4p\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Admit Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(J00-J99) Dise~45pn\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>chronic obstructive asthma</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J44) Other ch~vw4p\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Principal Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(J00-J99) Dise~45pn\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>chronic obstructive asthma</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J44) Other ch~vw4p\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Secondary Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Secondary Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(J00-J99) Dise~45pn\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of chronic obstructive asthma (ICD10_ICD9 code J44) that is either listed as the Admit Diagnosis, Principal Diagnosis, or Secondary Diagnosis in their medical records, within the Diseases of the respiratory system (j0-j9) and Chronic lower respiratory diseases (j40-j47) categories. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Admit Diagnosis@14:54:42</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>chronic obstructive asthma</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J44) Other ch~vw4p\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Admit Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(J00-J99) Dise~45pn\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>chronic obstructive asthma</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J44) Other ch~vw4p\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Principal Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(J00-J99) Dise~45pn\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>chronic obstructive asthma</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J44) Other ch~vw4p\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Secondary Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Secondary Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(J00-J99) Dise~45pn\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with chronic obstructive asthma as either an Admit Diagnosis, Principal Diagnosis, or Secondary Diagnosis within the Diseases of the respiratory system (j0-j9) category, specifically within the Chronic lower respiratory diseases (j40-j47) group, using the ICD10_ICD9 coding system. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:16@13:27:27</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:16</item_name>
<item_key>masterid:29581</item_key>
<tooltip>Mental Disorders-Skin diseases@11:21:24@13:9:44@13:11:29@13:26:16 [7-26-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>0</hlevel>
<item_name>(PrevQuery) Mental Disorders-Skin diseases@11:21:24@13:9:44</item_name>
<item_key>masterid:29578</item_key>
<tooltip>Mental Disorders-Skin diseases@11:21:24@13:9:44 [7-26-2023] [demo]</tooltip>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients who have been diagnosed with both mental disorders and skin diseases, specifically within the time frame of 1:21:24, 13:9:44, 13:1:29, and 13:26:16, with a high level of accuracy (100) and any timing. This query includes two items: the first one focuses on mental disorders and skin diseases combined, while the second item focuses only on mental disorders and skin diseases with the time frame of 1:21:24 and 13:9:44. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Beyond -High sc@22:42:56</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Beyond college</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Education\Beyond college\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Education \ Beyond college</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>High school grad.</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Education\High school grad.\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Education \ High school grad.</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients who have completed education beyond college (e.g. Bachelor's degree, Master's degree, Doctorate degree, etc.) or are high school graduates. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>(t) Circulatory sysHematologic disMusculoskeletal@09:56:09</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<subquery_constraint>
<first_query>
<query_id>Observation A</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>FIRST</aggregate_operator>
</first_query>
<operator>LESS</operator>
<second_query>
<query_id>Observation B</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>FIRST</aggregate_operator>
</second_query>
</subquery_constraint>
<subquery>
<query_id>Observation A</query_id>
<query_type>EVENT</query_type>
<query_name>Observation A</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Hematologic diseases</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Hematologic diseases (280-289)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Hematologic diseases</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
<subquery>
<query_id>Observation B</query_id>
<query_type>EVENT</query_type>
<query_name>Observation B</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Musculoskeletal and connective tissue</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Musculoskeletal and connective tissue (710-739)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Musculoskeletal and connective tissue</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
</ns3:query_definition>
``` |
I want to find patients who have been diagnosed with a circulatory system disorder and also have a diagnosis of either a hematologic disease or a musculoskeletal and connective tissue disorder within the same instance of care. The query is designed to identify patients with specific combinations of diagnoses related to these systems, with a focus on the circulatory system, and it is intended to provide insights into co-occurrences of these conditions. The query is also set to have a high level of specificity and accuracy, ensuring that the results are accurate and relevant. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Silo-workers' a@09:51:55</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Silo-workers' asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Lung diseases due to external irritants (500-508)\(506) Respiratory conditions due ~\(506-9) Unspecified respiratory c~\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ ... \ Lung diseases due to external irritants \ Respiratory conditions due to chemical fumes and vapors \ Unspecified respiratory conditions due to fumes and vapors</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
<item>
<hlevel>5</hlevel>
<item_name>Red-cedar asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(495) Extrinsic allergic alveolit~\(495-8) Other specified allergic ~\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Extrinsic allergic alveolitis \ Other specified allergic alveolitis and pneumonitis</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of silo workers' asthma and red cedar asthma in the database, with a specificity scale of 0 and an accuracy scale of 100, using the ICD-9 coding system for diagnoses and including any timing. The query will search for these conditions in the Respiratory System category, under Lung Diseases due to External Irritants and Chronic Obstructive Diseases, respectively. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Neurologic Disorders@13:29:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Neurologic Disorders</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Neurologic Disorders (320-389)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Neurologic Disorders</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Neurologic Disorders (320-389)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name> 45-54 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\45-54 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 45-54 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with neurologic disorders, specifically those aged 45-54 years old, where the neurologic disorder is a principal diagnosis, and the timing is not limited. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Ische-Abnor-Diure@10:42:28</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<constrain_by_date>
<date_from>1979-12-01T00:00:00.000-05:00</date_from>
</constrain_by_date>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Abnormal echocardiogram nos</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(R00-R99) Symp~mt2x\(R90-R94) Abno~rtdf\(R93) Abnormal~7bac\(R93.1) Abnorm~1is6\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified (r00-r99) \ Abnormal findings on diagnostic imaging and in function studies, without diagnosis (r90-r94)
\ Abnormal findings on diagnostic imaging of other body structures \ Abnormal echocardiogram nos</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Diuretics</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME68) cardiovascular agents\(LME81) diuretics\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ cardiovascular agents \ diuretics</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of ischemic heart disease who have had an abnormal echocardiogram and were prescribed diuretics at any time. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Beyond college@22:43:18</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Beyond college</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Education\Beyond college\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Education \ Beyond college</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of the term "Beyond college" in the Demographics section of the Oasis dataset within the Education category, with a specificity scale of 0, panel timing set to ANY, and a panel accuracy scale of 100. The query is named "Beyond college@222:43:18" and is not a synonym. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Ischemic heart @10:40:18</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of Ischemic heart disease diagnoses within the Circulatory system category in the i2b2 database, with a specificity scale of 0, accuracy scale of 100, and no inversion applied, for any time period. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Ischemi-Abnorma@10:41:58</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<constrain_by_date>
<date_from>1979-12-01T00:00:00.000-05:00</date_from>
</constrain_by_date>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Abnormal echocardiogram nos</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(R00-R99) Symp~mt2x\(R90-R94) Abno~rtdf\(R93) Abnormal~7bac\(R93.1) Abnorm~1is6\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified (r00-r99) \ Abnormal findings on diagnostic imaging and in function studies, without diagnosis (r90-r94)
\ Abnormal findings on diagnostic imaging of other body structures \ Abnormal echocardiogram nos</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with a diagnosis of ischemic heart disease and an abnormal echocardiogram within any time frame, with a specificity scale of 0 and a panel accuracy scale of 100. The first panel will search for the diagnosis of ischemic heart disease in the circulatory system category, while the second panel will search for abnormal findings on diagnostic imaging of other body structures, specifically abnormal echocardiograms. The query is not inverted, meaning it will return only patients with both conditions. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Ischemic heart @10:43:16</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of Ischemic heart disease diagnoses within the Circulatory system category in the i2b2 database, with a specificity scale of 0, accuracy scale of 100, and any timing. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Clinical Dementia Rating (CDR)-35-44 years old@14:28:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Clinical Dementia Rating (CDR)</item_name>
<item_key>\\BIRN\BIRN\oasis\Clinical Measures\Clinical Dementia Rating (CDR)\</item_key>
<item_icon>FA</item_icon>
<tooltip>oasis \ Clinical Measures \ Clinical Dementia Rating (CDR)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 35-44 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\35-44 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 35-44 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find the Clinical Dementia Rating (CDR) for patients aged 35-44 years old, at any time during their medical record. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>PLATELET COUNT (LOINC:777-3)-2 days-Male@10:26:27</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>PLATELET COUNT (LOINC:777-3)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB53) Hematology\(LLB57) Complete Blood Count\PLT\LOINC:777-3\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Hematology \ Complete Blood Count \ PLT (Group:PLT) \ PLATELET COUNT (LOINC:777-3)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 2 days</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Length of stay\ 2 days\</item_key>
<item_icon>LA</item_icon>
<tooltip>Visit Details \ Length of stay \ 2 days</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find the platelet count (LOINC:777-3) for male patients within 2 days of their visit, with a specificity scale of 0 and an accuracy scale of 100, where the query timing is any time and the panel timing is also any time. The hlevel for the platelet count item is 5, and the hlevel for the 2 days and male items are both 3. The query name is "PLATELET COUNT (LOINC:777-3)-2 days-Male@10:26:27". |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>PLATELET COUNT (LOINC:777-3)-2 days-Male@10:26:27</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>PLATELET COUNT (LOINC:777-3)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB53) Hematology\(LLB57) Complete Blood Count\PLT\LOINC:777-3\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Hematology \ Complete Blood Count \ PLT (Group:PLT) \ PLATELET COUNT (LOINC:777-3)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 2 days</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Length of stay\ 2 days\</item_key>
<item_icon>LA</item_icon>
<tooltip>Visit Details \ Length of stay \ 2 days</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>1</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients who have had a platelet count test (LOINC:777-3) performed within the last 2 days, regardless of the time of day when the test was conducted. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory sys@20:14:23</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find any diagnoses related to the circulatory system (ICD codes 390-459) with a specificity scale of 0 and an accuracy scale of 100, with a single occurrence, using the i2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Beyon-Statu-Norma@14:21:36</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Beyond college</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Education\Beyond college\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Education \ Beyond college</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Status 2</item_name>
<item_key>\\BIRN\BIRN\oasis\Demographics\Socioeconomic Status\Status 2\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Demographics \ Socioeconomic Status \ Status 2</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Normalized Whole Brain Volume</item_name>
<item_key>\\BIRN\BIRN\oasis\Derived Anatomic Volumes\Normalized Whole Brain Volume\</item_key>
<item_icon>LA</item_icon>
<tooltip>oasis \ Derived Anatomic Volumes \ Normalized Whole Brain Volume</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a college education level (Beyond college) and a specific socioeconomic status (Status 2) who have had their whole brain volume normalized (Normalized Whole Brain Volume) measured at any time during their visits. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Princip-Procedu@14:49:14</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diseases of the musculoskeletal system and connective tissue (m00-m99)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(M00-M99) Dise~6mvn\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the musculoskeletal system and connective tissue (m00-m99)</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Principal Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(M00-M99) Dise~6mvn\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Procedures</item_name>
<item_key>\\i2b2_PROC\i2b2\Procedures\</item_key>
<item_icon>FA</item_icon>
<tooltip>Procedures</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with diagnoses related to diseases of the musculoskeletal system and connective tissue (ICD codes M0-M9) as their principal diagnosis, and also include any procedures related to these conditions. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Austin,-ICD9 (I@13:17:13</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Austin, Kate, MD</item_name>
<item_key>\\i2b2_PROV\i2b2\Providers\Medicine\Cardiology\Austin, Kate, MD\</item_key>
<item_icon>LA</item_icon>
<tooltip>i2b2 \ Providers \ Medicine \ Cardiology \ Austin, Kate, MD</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>ICD9 (Inpatient)</item_name>
<item_key>\\i2b2_PROC\i2b2\Procedures\PRC\ICD9 (Inpatient)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Procedures \ ICD9 (Inpatient)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances where Austin, Kate, MD, a provider in the field of Cardiology Medicine, has performed or been associated with any inpatient ICD9 procedures. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Ischemic heart @15:29:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Ischemic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Ischemic heart disease (410-414)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Ischemic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of Ischemic heart disease diagnoses in the Circulatory system (390-459) category, specifically within the Ischemic heart disease (410-414) subcategory, with a specificity scale of 0 and accuracy scale of 100, covering any time period (ANY), using the i2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnos-Gender@07:38:14</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Gender</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographic \ Gender</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses associated with a patient's gender in the i2b2 database, with a high level of specificity and accuracy, regardless of the timing of the diagnosis. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabetes mellit@14:38:47</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with a diagnosis of diabetes mellitus, regardless of the specific time frame, using the ICD-9-CM code 250, with a high level of specificity and accuracy, and including all subcategories within the Endocrine disorders category. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabetes mellit@14:40:35</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with a diagnosis of diabetes mellitus in the Endocrine disorders section of the i2b2 database, specifically within the Other endocrine gland diseases category. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabetes mellit@14:39:16</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of Diabetes mellitus, using the i2b2 query builder with the specificity scale set to 0, accuracy scale set to 100, and the panel timing set to ANY. The query is named "Diabetes mellitus@14:39:16" and is part of a panel with panel number 1 and panel timing set to ANY. The query is looking for the diagnosis under the category of "Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus" with the hlevel set to 4. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabetes mellit@14:43:13</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of the diagnosis "Diabetes mellitus" in the i2b2 database, with a specificity scale of 0 and accuracy scale of 100, using the panel number 1 and timing set to "ANY". This query will search for the term "(250) Diabetes mellitus" within the category "Other endocrine gland diseases" under the broader categories "Endocrine disorders" and "Diagnoses" in the i2b2 ontology. The query has no synonyms and is not an inverted search. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabete-Asthma@14:43:47</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of both Diabetes Mellitus and Asthma, with no specific timing requirement, and a high accuracy scale of 1000% for each condition. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system-Acute Rheumatic fever@14:33:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>1</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute Rheumatic fever</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Acute Rheumatic fever (390-392)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Acute Rheumatic fever</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of 'Acute Rheumatic fever' within the 'Circulatory system' category of diagnoses, with a specificity scale of 0 and accuracy scale of 100, using the 'Admit Diagnosis' modifier, and the timing set to 'ANY'. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Chronic obstructive asthma@14:52:31</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate to severe</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate To Severe\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild to moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild To Mod\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Secondary Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Secondary Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of chronic obstructive asthma diagnoses in the i2b2 system, including those classified as mild, moderate, moderate to severe, or severe, and those marked as primary or secondary diagnoses. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Neurologic Disorders@12:46:51</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Neurologic Disorders</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Neurologic Disorders (320-389)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Neurologic Disorders</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Neurologic Disorders (320-389)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with any neurologic disorders (diagnosis codes 320-389) listed as an admit diagnosis, with a specificity scale of 0 and a total item occurrence of 1, within a specified time frame (ANY). This query has a high accuracy scale of 100 and is not inverted. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabete-Asthma@14:44:10</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients who have been diagnosed with both Diabetes Mellitus and Asthma at any time, with a high level of accuracy and specificity, using the i2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabete-Pain in@14:44:56</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Pain in limb</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Musculoskeletal and connective tissue (710-739)\Rheumatism, excluding the back (725-729)\(729) Other disorders of soft tis~\(729-5) Pain in limb\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Musculoskeletal and connective tissue \ Rheumatism, excluding the back \ Other disorders of soft tissues \ Pain in limb</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of diabetes mellitus and those who have experienced pain in their limbs, with no specific time frame or accuracy requirements for the query. The query will include two panels: the first panel will focus on diagnoses related to endocrine disorders, specifically diabetes mellitus, and the second panel will focus on musculoskeletal and connective tissue issues, particularly other disorders of soft tissues, such as pain in the limb. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system-Acute Rheumatic fever@14:33:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>1</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute Rheumatic fever</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Acute Rheumatic fever (390-392)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Acute Rheumatic fever</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances where "Circulatory system" is diagnosed with "Acute Rheumatic fever" as the primary diagnosis, and the time frame is not restricted. The query is set to have a high specificity scale of 100, meaning it is very specific and will only return results that match this exact condition. The query is also not inverted, meaning it will only return positive results. The query will look for this combination of diagnoses in the "Diagnoses" section of the patient's chart. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mild intermittent asthma with status asthmaticus-Chronic obstructive asthma@14:49:18</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Mild intermittent asthma with status asthmaticus</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J40-J47) Chro~fbox\(J45) Asthma\(J45.2) Mild i~rq96\(J45.22) Mild~o47u\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Chronic lower respiratory diseases (j40-j47) \ Asthma \ Mild intermittent asthma
\ Mild intermittent asthma with status asthmaticus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients who have been diagnosed with mild intermittent asthma with status asthmaticus and chronic obstructive asthma at any time. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system-Acute Rheumatic fever@14:33:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>1</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute Rheumatic fever</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Acute Rheumatic fever (390-392)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Acute Rheumatic fever</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with a diagnosis of Acute Rheumatic fever (390-392) in the Circulatory System (390-459) category, with no specific time frame and no synonyms applied. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system-Acute Rheumatic fever@14:33:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>1</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute Rheumatic fever</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Acute Rheumatic fever (390-392)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Acute Rheumatic fever</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with a diagnosis of Acute Rheumatic fever (ICD-9 code 390-392) within the Circulatory System (ICD-9 codes 390-459) category, with no specific time constraint and 100% accuracy, excluding any synonyms. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system-Acute Rheumatic fever@14:33:52</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute Rheumatic fever</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Acute Rheumatic fever (390-392)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Acute Rheumatic fever</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances where a patient has been diagnosed with Acute Rheumatic fever within the Circulatory system category in the i2b2 database. This query looks for any occurrences of this diagnosis, regardless of the timing, and is set to have a high specificity scale and accuracy. The query includes two panels, one for the Circulatory system category and another for Acute Rheumatic fever as a subcategory within it. The query does not invert the results, meaning it will return only positive matches. The query is not a synonym and is constrained by the "Admit Diagnosis" modifier, meaning it will only return results where the diagnosis was made during admission. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system@14:43:30</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with diagnoses related to the circulatory system (ICD codes 390-459) in the i2b2 database, regardless of the timing of the diagnosis, and with a specificity scale of 0, accuracy scale of 100, and only one occurrence of the item. The query should not be inverted, and the constrain by modifier should be "Admit Diagnosis". |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Chronic obstructive asthma@14:51:59</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate to severe</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate To Severe\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild to moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild To Mod\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find chronic obstructive asthma diagnoses in the Respiratory system (460-519) category, specifically within the Chronic obstructive diseases (490-496) subcategory, and further narrowed down to the Asthma (493) subcategory, with the specific diagnosis of chronic obstructive asthma (493-2). I would like to constrain this query by severity, with options including mild, moderate, moderate to severe, and principal diagnosis. Additionally, I want to include a synonym for the term "chronic obstructive asthma" in the search. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Chronic obstructive asthma@14:52:31</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate to severe</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate To Severe\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild to moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild To Mod\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>1</hlevel>
<item_name>Chronic obstructive asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\(493-2) Chronic obstructive asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma \ Chronic obstructive asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Secondary Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Secondary Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find chronic obstructive asthma diagnoses in the Respiratory system (460-519) category under Chronic obstructive diseases (490-496) subcategory with varying severity levels, including mild, moderate, moderate to severe, and principal and secondary diagnoses. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Route@15:18:12</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Hormones</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME148) hormones\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ hormones</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Route</modifier_name>
<modifier_key>\\i2b2_MEDS\Medication\Route\</modifier_key>
<applied_path>\i2b2\Medications\%</applied_path>
<constrain_by_value>
<value_operator>IN</value_operator>
<value_constraint>('IV')</value_constraint>
<value_type>TEXT</value_type>
</constrain_by_value>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all medications that belong to the class 'hormones' administered through the 'IV' route. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>(t) CoughAcute upper res@14:32:21</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<subquery_constraint>
<first_query>
<query_id>Observation A</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>ANY</aggregate_operator>
</first_query>
<operator>LESSEQUAL</operator>
<second_query>
<query_id>Observation B</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>ANY</aggregate_operator>
</second_query>
<span>
<operator>LESSEQUAL</operator>
<span_value>7</span_value>
<units>DAY</units>
</span>
</subquery_constraint>
<subquery>
<query_id>Observation A</query_id>
<query_type>EVENT</query_type>
<query_name>Observation A</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Cough</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(R00-R99) Symp~mt2x\(R00-R09) Symp~evaq\(R05) Cough\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified (r00-r99) \ Symptoms and signs involving the circulatory and respiratory systems (r00-r09)
\ Cough</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
<subquery>
<query_id>Observation B</query_id>
<query_type>EVENT</query_type>
<query_name>Observation B</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute upper respiratory infections of multiple and unspecified sites</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J00-J06) Acut~bb2r\(J06) Acute up~x6qf\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Acute upper respiratory infections (j00-j06) \ Acute upper respiratory infections of multiple and unspecified sites</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
</ns3:query_definition>
``` |
I want to find patients who have been diagnosed with acute upper respiratory infections within 7 days of having a cough symptom documented in their medical records. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Inpatie-Length @14:28:22</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Inpatient visit</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Visit type\Inpatient visit\</item_key>
<item_icon>LA</item_icon>
<tooltip>Visit Details \ Visit type \ Inpatient visit</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Length of stay</item_name>
<item_key>\\i2b2_VISIT\i2b2\Visit Details\Length of stay\</item_key>
<item_icon>FA</item_icon>
<tooltip>Visit Details \ Length of stay</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find the total number of inpatient visits with their respective length of stay. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>(t) CoughAcute upper res@14:32:44</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<subquery_constraint>
<first_query>
<query_id>Observation A</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>ANY</aggregate_operator>
</first_query>
<operator>LESSEQUAL</operator>
<second_query>
<query_id>Observation B</query_id>
<join_column>STARTDATE</join_column>
<aggregate_operator>ANY</aggregate_operator>
</second_query>
<span>
<operator>LESSEQUAL</operator>
<span_value>7</span_value>
<units>DAY</units>
</span>
</subquery_constraint>
<subquery>
<query_id>Observation A</query_id>
<query_type>EVENT</query_type>
<query_name>Observation A</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Cough</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(R00-R99) Symp~mt2x\(R00-R09) Symp~evaq\(R05) Cough\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified (r00-r99) \ Symptoms and signs involving the circulatory and respiratory systems (r00-r09)
\ Cough</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
<subquery>
<query_id>Observation B</query_id>
<query_type>EVENT</query_type>
<query_name>Observation B</query_name>
<query_timing>SAMEINSTANCENUM</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>0</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Acute upper respiratory infections of multiple and unspecified sites</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(J00-J99) Dise~45pn\(J00-J06) Acut~bb2r\(J06) Acute up~x6qf\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the respiratory system (j00-j99) \ Acute upper respiratory infections (j00-j06) \ Acute upper respiratory infections of multiple and unspecified sites</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</subquery>
</ns3:query_definition>
``` |
I want to find patients who have an acute upper respiratory infection within 7 days of experiencing a cough, where both events occurred within the same instance number and have a specificity scale of 0, meaning the query is not limited to a specific level of detail. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Admit Diagnosis@11:45:59</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Symptoms, signs, and ill-defined conditions</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Symptoms, signs, and ill-defined conditions (780-799)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Symptoms, signs, and ill-defined conditions</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Symptoms, signs, and ill-defined conditions (780-799)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of admittance diagnoses related to symptoms, signs, and ill-defined conditions (ICD-9 codes 780-79) within the i2b2 database using the query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Pulmona-FEV1 % @14:26:03</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Pulmonary Function Reports</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\Pulmonary Function Reports\</item_key>
<item_icon>FA</item_icon>
<tooltip>Labtests \ Pulmonary Function Reports</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>0</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>3</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>FEV1 % of Predicted Post BD</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\Pulmonary Function Reports\pulfev1prcpredpost\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Pulmonary Function Reports \ FEV1 % of Predicted Post BD</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of Pulmonary Function Reports, specifically focusing on the FEV1 (Forced Expiratory Volume in 1 second) percentage of predicted post bronchodilator (Post BD) values, with a high level of specificity and accuracy, and without inverting the data, within any timeframe. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mild to moderat@15:03:58</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild to moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild To Mod\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all cases of mild to moderate asthma in the Respiratory system's Chronic obstructive diseases category within the Diagnoses section of the i2b2 database, with a specificity scale of 0, accuracy scale of 100, and a panel timing of ANY. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Mild to moderat@15:04:40</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Mild to moderate</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Mild To Mod\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>4</hlevel>
<item_name>Asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate to severe</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate To Severe\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of asthma, where the severity is either mild to moderate or moderate to severe, within the respiratory system and chronic obstructive diseases categories. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Moderate to sev@15:04:56</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Asthma</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\(493) Asthma\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Chronic obstructive diseases \ Asthma</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Moderate to severe</modifier_name>
<modifier_key>\\i2b2_DIAG\Severity\Moderate To Severe\</modifier_key>
<applied_path>\i2b2\Diagnoses\Respiratory system (460-519)\Chronic obstructive diseases (490-496)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of Asthma diagnoses in the Respiratory system category with a severity level of Moderate to Severe. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Medications-Chemistry@20:51:14</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Medications</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\</item_key>
<item_icon>FA</item_icon>
<tooltip>Medications</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Chemistry</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\</item_key>
<item_icon>FA</item_icon>
<tooltip>Labtests \ Chemistry</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients who have had medications recorded in their Electronic Health Record (EHR) and have also had chemistry lab tests performed at any time. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Medications-Chemistry@20:51:14</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Medications</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\</item_key>
<item_icon>FA</item_icon>
<tooltip>Medications</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Chemistry</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\</item_key>
<item_icon>FA</item_icon>
<tooltip>Labtests \ Chemistry</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients who have had any medication recorded in the i2b2 Medications module and any chemistry lab test performed from the i2b2 Labtests module with the specific category of Chemistry, at any time during their medical history, with a high level of accuracy and specificity. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@15:19:56</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database, with no specificity or timing constraints, and with a high level of accuracy, using the "Diagnoses" element within a single panel named "1" and displayed with the "FA" icon, and this query is named "Diagnoses@15:19:56". |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@15:50:44</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database with a specificity scale of 0, a panel timing of ANY, an accuracy scale of 100, and a total of 1 item occurrence, using the class ENC and the key \\i2b2_DIAG\i2b2\Diagnoses\. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diseases of the@19:03:51</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diseases of the digestive system (k00-k94)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(K00-K94) Dise~rl1r\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the digestive system (k00-k94)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses related to diseases of the digestive system, specifically within the ICD-10 and ICD-9 classification codes ranging from K0 to K94, with a specificity scale of 0, and a total item occurrence of 1. The query will be applied to any time frame (ANY), and the panel accuracy scale is set to 100. The query name is "Diseases of the@19:03:51," and the panel number is 1. The icon used for this query is FA, and the class is ENC. The query does not include synonyms, and the invert option is set to 0. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Male-Operati@12:47:47</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Operations on digestive system</item_name>
<item_key>\\i2b2_PROC\i2b2\Procedures\PRC\ICD9 (Inpatient)\(42-54) Operations on digestive system\</item_key>
<item_icon>FA</item_icon>
<tooltip>Procedures \ ICD9 (Inpatient) \ Operations on digestive system</tooltip>
<class>ENC</class>
<constrain_by_date>
<date_from>1990-01-01T00:00:00.000-05:00</date_from>
<date_to>2000-12-31T00:00:00.000-05:00</date_to>
</constrain_by_date>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients who have undergone any operation on the digestive system at any time, as recorded in the ICD9 (Inpatient) code set. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Oasis-Diagn-Medic@14:40:01</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Oasis</item_name>
<item_key>\\BIRN\BIRN\oasis\</item_key>
<item_icon>FA</item_icon>
<tooltip>oasis</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Medications</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\</item_key>
<item_icon>FA</item_icon>
<tooltip>Medications</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all occurrences of the term "Oasis" in the BIRN section, all occurrences of the term "Diagnoses" in the i2b2_DIAG section, and all occurrences of the term "Medications" in the i2b2_MEDS section, with no specific time constraints, and with a high level of accuracy and specificity. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@15:13:31</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database, with a specificity scale of 0, accuracy scale of 100, and a total of 1 occurrence, within any time frame, using the Diagnoses panel and the item "Diagnoses" with the key \\i2b2_DIAG\i2b2\Diagnoses\. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@15:14:22</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database with a specificity scale of 0, panel timing set to ANY, panel accuracy scale of 100, and only one occurrence per item. This query is looking for the most accurate and relevant diagnoses information, without any inversion or synonyms, and it is not restricted by any time frame. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Gender@15:19:11</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Gender</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographic \ Gender</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with any gender recorded in the Demographics table within the i2b2 database, using the 'Gender' concept with a specificity scale of 0, accuracy scale of 100, and a panel timing of 'ANY'. This query is named 'Gender@15:19:1' and belongs to panel 1, with only one item occurrence. The concept is of high-level 2, and the class is 'ENC'. This query is not a synonym for any other concept. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@15:15:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database, with a specificity scale of 0 and accuracy scale of 100, looking at any time period, and including only one item in the panel with the key \\i2b2_DIAG\i2b2\Diagnoses\, and with no synonyms applied. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system@15:20:33</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find any diagnoses related to the Circulatory system (ICD codes 390-459) with a specificity scale of 0 and an accuracy scale of 100, within a time frame of ANY. This query will return a single panel with the specified information, and the item will be displayed as "Circulatory system" with the tooltip "Diagnoses \ Circulatory system" and the class will be ENC. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabetes mellit@14:12:02</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients who have been diagnosed with Diabetes mellitus (Endocrine disorders > Other endocrine gland diseases > Diabetes mellitus) at any time during their medical history, with a specificity scale of 0 and a total item occurrence of 1, and the panel accuracy scale set to 100. The query is named "Diabetes mellitus@14:12:02" and the class is ENC (Encounter). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Circulatory system@15:20:33</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses related to the Circulatory system (ICD-9 codes 390-459) with any specificity and accuracy scale, using the I2b2 query builder. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Income@15:48:24</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Income</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Income\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Income</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with any recorded income information in the Demographics section of the i2b2 database, with a high level of specificity (1000%) and accuracy, and the query should be applied to the entire dataset without any specific timing constraints. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diseases of the@19:03:34</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diseases of the digestive system (k00-k94)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(K00-K94) Dise~rl1r\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the digestive system (k00-k94)</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find diagnoses related to diseases of the digestive system, specifically those categorized under ICD-10 and ICD-9 codes ranging from K0 to K94, with a high level of specificity and no time constraint. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Hypertr-Other h@19:42:01</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Hypertrophic cardiomyopathy</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Other forms of heart disease (420-429)\(425) Cardiomyopathy\(425-4) Other primary cardiomyopa~\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Other forms of heart disease \ Cardiomyopathy \ Other primary cardiomyopathies</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Other hypertrophic cardiomyopathy</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I30-I52) Othe~w6tz\(I42) Cardiomyopathy\(I42.2) Other~tp3z\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Other forms of heart disease (i30-i52) \ Cardiomyopathy \ Other hypertrophic cardiomyopathy</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of hypertr-other (hypertrophic cardiomyopathy) using the i2b2 query builder. This query searches for patients with a diagnosis of hypertrophic cardiomyopathy in the Circulatory System (390-459) category, specifically Other forms of heart disease (420-429), Cardiomyopathy (425-4), and Other primary cardiomyopathies (425-4). Additionally, it includes patients with a diagnosis of Other hypertrophic cardiomyopathy in the Diseases of the circulatory system (i0-i9) category, Other forms of heart disease (i30-i52), and Cardiomyopathy (i42). The specificity scale is set to 0, indicating that the query should return all possible results, and the accuracy scale is set to 100, indicating that the results are highly accurate. The query timing is set to ANY, meaning that the diagnosis could have occurred at any time during the patient's medical history |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Neurologic Disorders@12:47:56</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Neurologic Disorders</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Neurologic Disorders (320-389)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Neurologic Disorders</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Neurologic Disorders (320-389)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances where the principal diagnosis is a neurologic disorder, within the range of codes 320-389, with a high level of specificity and accuracy, and without any time constraints. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Pulmonary embol@19:02:40</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Pulmonary embolism</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(I00-I99) Dise~3w8h\(I26-I28) Pulm~lb71\(I26) Pulmonar~kl6j\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the circulatory system (i00-i99) \ Pulmonary heart disease and diseases of pulmonary circulation (i26-i28)
\ Pulmonary embolism</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances of pulmonary embolism diagnoses within the ICD10-ICD9 classification system, specifically within the Diagnoses, Diseases of the Circulatory System, and Pulmonary Heart Disease and Diseases of Pulmonary Circulation categories, with a specificity scale of 0 and a panel accuracy scale of 100, and with the panel timing set to ANY. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Hypertrophic ca@19:38:23</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Hypertrophic cardiomyopathy</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Other forms of heart disease (420-429)\(425) Cardiomyopathy\(425-4) Other primary cardiomyopa~\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Other forms of heart disease \ Cardiomyopathy \ Other primary cardiomyopathies</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with a diagnosis of hypertrophic cardiomyopathy in the circulatory system category, specifically within the subcategory of other forms of heart disease, in the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Primary hypertr@19:41:21</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>Primary hypertrophic cardiomyopathy</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Other forms of heart disease (420-429)\(425) Cardiomyopathy\(425-4) Other primary cardiomyopa~\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Other forms of heart disease \ Cardiomyopathy \ Other primary cardiomyopathies</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
<item>
<hlevel>5</hlevel>
<item_name>Hypertrophic cardiomyopathy</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Other forms of heart disease (420-429)\(425) Cardiomyopathy\(425-4) Other primary cardiomyopa~\</item_key>
<item_icon>LA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Other forms of heart disease \ Cardiomyopathy \ Other primary cardiomyopathies</tooltip>
<class>ENC</class>
<item_is_synonym>true</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of primary hypertrophic cardiomyopathy or hypertrophic cardiomyopathy, within any time frame, with a high level of specificity and accuracy, and both terms are considered synonyms for the purpose of this query. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Princ-Diges-Other@14:07:14</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Arterial vascular disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Arterial vascular disease (440-447)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Arterial vascular disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>Chronic Rheumatic heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Chronic Rheumatic heart disease (393-398)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Chronic Rheumatic heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Digestive system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Digestive system (520-579)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Digestive system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>2</hlevel>
<item_name>Endocrine disorders</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Other forms of heart disease</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\Other forms of heart disease (420-429)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system \ Other forms of heart disease</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with a principal diagnosis of arterial vascular disease or chronic rheumatic heart disease in the Circulatory system category, along with any diagnoses related to the Digestive system or Endocrine disorders, and also including other forms of heart disease in the Circulatory system category. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Femal-Jewis-Livin@17:53:47</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Jewish</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Religion\Jewish\</item_key>
<item_icon>MA</item_icon>
<tooltip>Demographic \ Religion \ Jewish</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Living</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Vital Status\Living\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Vital Status \ Living</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find female patients of Jewish religion who are currently living. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name> 18-34-Female@13:05:10</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 18-34 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\18-34 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 18-34 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find female patients between the ages of 18 and 34 years old. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name> 18--Femal-Admit@13:06:22</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 18-34 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\18-34 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 18-34 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diseases of the digestive system (k00-k94)</item_name>
<item_key>\\ICD10_ICD9\Diagnoses\(K00-K94) Dise~rl1r\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Diseases of the digestive system (k00-k94)</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\ICD10_ICD9\Admit Diagnosis\</modifier_key>
<applied_path>\Diagnoses\(K00-K94) Dise~rl1r\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find female patients aged 18-34 years old with a primary diagnosis of diseases of the digestive system (ICD-9 codes K0-K94) at the time of admission. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diabetes mellit@14:12:03</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients with a diagnosis of Diabetes mellitus in the Endocrine disorders category, specifically within the Other endocrine gland diseases subcategory, using the i2b2 query builder with a specificity scale of 0 and an accuracy scale of 100, looking at any time frame, and with a panel number of 1 and panel timing of ANY. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Admit Diagnosis@11:42:54</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Diabetes mellitus</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Endocrine disorders (240-259)\Other endocrine gland diseases (250-259)\(250) Diabetes mellitus\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Endocrine disorders \ Other endocrine gland diseases \ Diabetes mellitus</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Admit Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Admit Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Endocrine disorders (240-259)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all instances where 'Diabetes mellitus' was listed as an Admit Diagnosis within the Endocrine disorders category in the i2b2 database. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Male-Princip@16:05:28</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Circulatory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Circulatory system (390-459)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Circulatory system</tooltip>
<class>ENC</class>
<constrain_by_modifier>
<modifier_name>Principal Diagnosis</modifier_name>
<modifier_key>\\i2b2_DIAG\Principal Diagnosis\</modifier_key>
<applied_path>\i2b2\Diagnoses\Circulatory system (390-459)\%</applied_path>
</constrain_by_modifier>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients with a principal diagnosis related to the circulatory system (ICD codes 390-459). |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@10:29:11</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses with any timing, specificity scale set to 0, and a panel accuracy scale of 100, using the "Diagnoses" item with hlevel 1, icon FA, and class ENC, and the item key "\\i2b2_DIAG\i2b2\Diagnoses\" in the query definition. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>BASE EXCESS (LO@10:44:18</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>BASE EXCESS (LOINC:1925-7)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB24) Blood Gases\ABASEX\LOINC:1925-7\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Blood Gases \ Arterial HCO3 (Group:ABASEX) \ BASE EXCESS (LOINC:1925-7)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>LT</value_operator>
<value_constraint>5</value_constraint>
<value_unit_of_measure>meq/l</value_unit_of_measure>
<value_type>NUMBER</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>5</hlevel>
<item_name>ALT (SGPT) (LOINC:1742-6)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB25) Liver Function Tests\SGPT\LOINC:1742-6\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Liver Function Tests \ ALT (SGPT) (Group:SGPT) \ ALT (SGPT) (LOINC:1742-6)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>LT</value_operator>
<value_constraint>35</value_constraint>
<value_unit_of_measure>u/l</value_unit_of_measure>
<value_type>NUMBER</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients who have a BASE EXCESS (LOINC:1925-7) result with a value less than or equal to 5 meq/l and an ALT (SGPT) (LOINC:1742-6) result with a value less than or equal to 35 u/l, with no specific time constraint for when the tests were conducted, and with a specificity scale of 0 and a panel accuracy scale of 100. The query should search for these results in the Chemistry section of the Labtests category, specifically within the Blood Gases and Liver Function Tests subcategories. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@10:29:11</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>SAMEVISIT</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses recorded during the same visit with a specificity scale of 0 and an accuracy scale of 100, using the i2b2 query builder with the query named "Diagnoses@10:29:1". |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Diagnoses@10:29:11</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>SAMEINSTANCENUM</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>1</hlevel>
<item_name>Diagnoses</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all diagnoses recorded in the i2b2 database, with any level of specificity, and grouped within the same instance number, using the Diagnoses panel with a class of ENC and an icon of FA. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Male-Respi-Antih@12:43:08</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Respiratory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>1</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Antihistamines</item_name>
<item_key>\\i2b2_MEDS\i2b2\Medications\MUL\(LME219) respiratory agents\(LME221) antihistamines\</item_key>
<item_icon>FA</item_icon>
<tooltip>medications \ respiratory agents \ antihistamines</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients with any diagnoses related to the respiratory system who have not been prescribed antihistamines. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Female-Other b@12:41:31</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Female</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Female\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Female</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Other bacterial pneumonia</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\Pneumonia and influenza (480-487)\(482) Other bacterial pneumonia\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system \ Pneumonia and influenza \ Other bacterial pneumonia</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all female patients with a diagnosis of other bacterial pneumonia at any time. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Male-Respira@12:42:28</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Respiratory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients with any diagnosis related to the respiratory system. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Respi- 45--Physi@12:45:36</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>2</hlevel>
<item_name>Respiratory system</item_name>
<item_key>\\i2b2_DIAG\i2b2\Diagnoses\Respiratory system (460-519)\</item_key>
<item_icon>FA</item_icon>
<tooltip>Diagnoses \ Respiratory system</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 45-54 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\45-54 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 45-54 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name> 55-64 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>>= 65 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\>= 65 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ >= 65 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>3</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>1</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>4</hlevel>
<item_name>Physical therapy, respiratory therapy, rehabilitation, and related procedures</item_name>
<item_key>\\i2b2_PROC\i2b2\Procedures\PRC\ICD9 (Inpatient)\(87-99) Diagnostic and nonsurgical procedures\(p93) Physical therapy, respirato~\</item_key>
<item_icon>FA</item_icon>
<tooltip>Procedures \ ICD9 (Inpatient) \ Diagnostic and nonsurgical procedures \ Physical therapy, respiratory therapy, rehabilitation, and related procedures</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all patients with Respiratory system diagnoses who are between the ages of 45-64 years old and have had Physical therapy, respiratory therapy, rehabilitation, and related procedures performed on them. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name> 45-54-TOTAL L@12:46:13</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name> 45-54 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\45-54 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 45-54 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name> 55-64 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\55-64 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ 55-64 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
<item>
<hlevel>3</hlevel>
<item_name>>= 65 years old</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Age\>= 65 years old\</item_key>
<item_icon>FA</item_icon>
<tooltip>Demographics \ Age \ >= 65 years old</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>5</hlevel>
<item_name>TOTAL LDH (LOINC:2532-0)</item_name>
<item_key>\\i2b2_LABS\i2b2\Labtests\LAB\(LLB16) Chemistry\(LLB20) Cardiac Tests\LDH\LOINC:2532-0\</item_key>
<item_icon>LA</item_icon>
<tooltip>Labtests \ Chemistry \ Cardiac Tests \ LDH (Group:LDH) \ TOTAL LDH (LOINC:2532-0)</tooltip>
<class>ENC</class>
<constrain_by_value>
<value_operator>BETWEEN</value_operator>
<value_constraint>140 and 280</value_constraint>
<value_unit_of_measure>u/l</value_unit_of_measure>
<value_type>NUMBER</value_type>
</constrain_by_value>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find patients between the ages of 45-64 years old who have had a TOTAL LDH (LOINC:2532-0) test result within the range of 40-280 u/l. |
```xml
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<ns3:query_definition xmlns:ns2="http://www.i2b2.org/xsd/cell/crc/psm/1.1/" xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/analysisdefinition/1.1/" xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/">
<query_name>Male-Operati@12:47:29</query_name>
<query_timing>ANY</query_timing>
<specificity_scale>0</specificity_scale>
<panel>
<panel_number>1</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Male</item_name>
<item_key>\\i2b2_DEMO\i2b2\Demographics\Gender\Male\</item_key>
<item_icon>LA</item_icon>
<tooltip>Demographic \ Gender \ Male</tooltip>
<class>ENC</class>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
<panel>
<panel_number>2</panel_number>
<panel_timing>ANY</panel_timing>
<panel_accuracy_scale>100</panel_accuracy_scale>
<invert>0</invert>
<total_item_occurrences>1</total_item_occurrences>
<item>
<hlevel>3</hlevel>
<item_name>Operations on digestive system</item_name>
<item_key>\\i2b2_PROC\i2b2\Procedures\PRC\ICD9 (Inpatient)\(42-54) Operations on digestive system\</item_key>
<item_icon>FA</item_icon>
<tooltip>Procedures \ ICD9 (Inpatient) \ Operations on digestive system</tooltip>
<class>ENC</class>
<constrain_by_date>
<date_from>1990-01-01T00:00:00.000-05:00</date_from>
<date_to/>
</constrain_by_date>
<item_is_synonym>false</item_is_synonym>
</item>
</panel>
</ns3:query_definition>
``` |
I want to find all male patients who have had any operations on the digestive system according to the ICD9 (Inpatient) classification, with no specific time constraints. |
Subsets and Splits