# Copyright (c) 2019 NVIDIA CORPORATION. All rights reserved.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

from __future__ import absolute_import
from __future__ import division
from __future__ import print_function

import collections
import json
import math
import os
import random
import modeling
import optimization
import tokenization
import six
import tensorflow as tf
import horovod.tensorflow as hvd
import time

flags = tf.flags
FLAGS = None

def extract_flags():
    flags.DEFINE_integer(
        "max_seq_length", 384,
        "The maximum total input sequence length after WordPiece tokenization. "
        "Sequences longer than this will be truncated, and sequences shorter "
        "than this will be padded.")

    flags.DEFINE_integer(
        "doc_stride", 128,
        "When splitting up a long document into chunks, how much stride to "
        "take between chunks.")

    flags.DEFINE_integer(
        "max_query_length", 64,
        "The maximum number of tokens for the question. Questions longer than "
        "this will be truncated to this length.")

    flags.DEFINE_bool(
        "version_2_with_negative", False,
        "If true, the SQuAD examples contain some that do not have an answer.")

    flags.DEFINE_string("train_file", None,
                        "SQuAD json for training. E.g., train-v1.1.json")

    flags.DEFINE_string(
        "predict_file", None,
        "SQuAD json for predictions. E.g., dev-v1.1.json or test-v1.1.json")

    flags.DEFINE_string(
        "squad_dir", None,
        "The output directory where the model checkpoints will be written.")

    flags.DEFINE_string("vocab_file", None,
                        "The vocabulary file that the BERT model was trained on.")

    flags.DEFINE_bool(
        "do_lower_case", True,
        "Whether to lower case the input text. Should be True for uncased "
        "models and False for cased models.")

    flags.DEFINE_bool(
        "verbose_logging", False,
        "If true, all of the warnings related to data processing will be printed. "
        "A number of warnings are expected for a normal SQuAD evaluation.")
    flags.mark_flag_as_required("train_file")
    flags.mark_flag_as_required("predict_file")
    flags.mark_flag_as_required("squad_dir")
    flags.mark_flag_as_required("vocab_file")
    return flags.FLAGS

class SquadExample(object):
  """A single training/test example for simple sequence classification.

     For examples without an answer, the start and end position are -1.
  """

  def __init__(self,
               qas_id,
               question_text,
               doc_tokens,
               orig_answer_text=None,
               start_position=None,
               end_position=None,
               is_impossible=False):
    self.qas_id = qas_id
    self.question_text = question_text
    self.doc_tokens = doc_tokens
    self.orig_answer_text = orig_answer_text
    self.start_position = start_position
    self.end_position = end_position
    self.is_impossible = is_impossible

  def __str__(self):
    return self.__repr__()

  def __repr__(self):
    s = ""
    s += "qas_id: %s" % (tokenization.printable_text(self.qas_id))
    s += ", question_text: %s" % (
        tokenization.printable_text(self.question_text))
    s += ", doc_tokens: [%s]" % (" ".join(self.doc_tokens))
    if self.start_position:
      s += ", start_position: %d" % (self.start_position)
    if self.start_position:
      s += ", end_position: %d" % (self.end_position)
    if self.start_position:
      s += ", is_impossible: %r" % (self.is_impossible)
    return s

class InputFeatures(object):
  """A single set of features of data."""

  def __init__(self,
               unique_id,
               example_index,
               doc_span_index,
               tokens,
               token_to_orig_map,
               token_is_max_context,
               input_ids,
               input_mask,
               segment_ids,
               start_position=None,
               end_position=None,
               is_impossible=None):
    self.unique_id = unique_id
    self.example_index = example_index
    self.doc_span_index = doc_span_index
    self.tokens = tokens
    self.token_to_orig_map = token_to_orig_map
    self.token_is_max_context = token_is_max_context
    self.input_ids = input_ids
    self.input_mask = input_mask
    self.segment_ids = segment_ids
    self.start_position = start_position
    self.end_position = end_position
    self.is_impossible = is_impossible

def read_squad_examples(input_file, is_training, version_2_with_negative=False, input_data=None):
  """Return list of SquadExample from input_data or input_file (SQuAD json file)"""
  if input_data is None:
    with tf.gfile.Open(input_file, "r") as reader:
      input_data = json.load(reader)["data"]

  def is_whitespace(c):
    if c == " " or c == "\t" or c == "\r" or c == "\n" or ord(c) == 0x202F:
      return True
    return False

  examples = []
  for entry in input_data:
    for paragraph in entry["paragraphs"]:
      paragraph_text = paragraph["context"]
      doc_tokens = []
      char_to_word_offset = []
      prev_is_whitespace = True
      for c in paragraph_text:
        if is_whitespace(c):
          prev_is_whitespace = True
        else:
          if prev_is_whitespace:
            doc_tokens.append(c)
          else:
            doc_tokens[-1] += c
          prev_is_whitespace = False
        char_to_word_offset.append(len(doc_tokens) - 1)

      for qa in paragraph["qas"]:
        qas_id = qa["id"]
        question_text = qa["question"]
        start_position = None
        end_position = None
        orig_answer_text = None
        is_impossible = False
        if is_training:

          if version_2_with_negative:
            is_impossible = qa["is_impossible"]
          if (len(qa["answers"]) != 1) and (not is_impossible):
            raise ValueError(
                "For training, each question should have exactly 1 answer.")
          if not is_impossible:
            answer = qa["answers"][0]
            orig_answer_text = answer["text"]
            answer_offset = answer["answer_start"]
            answer_length = len(orig_answer_text)
            start_position = char_to_word_offset[answer_offset]
            end_position = char_to_word_offset[answer_offset + answer_length -
                                               1]
            # Only add answers where the text can be exactly recovered from the
            # document. If this CAN'T happen it's likely due to weird Unicode
            # stuff so we will just skip the example.
            #
            # Note that this means for training mode, every example is NOT
            # guaranteed to be preserved.
            actual_text = " ".join(
                doc_tokens[start_position:(end_position + 1)])
            cleaned_answer_text = " ".join(
                tokenization.whitespace_tokenize(orig_answer_text))
            if actual_text.find(cleaned_answer_text) == -1:
              tf.logging.warning("Could not find answer: '%s' vs. '%s'",
                                 actual_text, cleaned_answer_text)
              continue
          else:
            start_position = -1
            end_position = -1
            orig_answer_text = ""

        example = SquadExample(
            qas_id=qas_id,
            question_text=question_text,
            doc_tokens=doc_tokens,
            orig_answer_text=orig_answer_text,
            start_position=start_position,
            end_position=end_position,
            is_impossible=is_impossible)
        examples.append(example)

  return examples

def _check_is_max_context(doc_spans, cur_span_index, position):
  """Check if this is the 'max context' doc span for the token."""

  # Because of the sliding window approach taken to scoring documents, a single
  # token can appear in multiple documents. E.g.
  #  Doc: the man went to the store and bought a gallon of milk
  #  Span A: the man went to the
  #  Span B: to the store and bought
  #  Span C: and bought a gallon of
  #  ...
  #
  # Now the word 'bought' will have two scores from spans B and C. We only
  # want to consider the score with "maximum context", which we define as
  # the *minimum* of its left and right context (the *sum* of left and
  # right context will always be the same, of course).
  #
  # In the example the maximum context for 'bought' would be span C since
  # it has 1 left context and 3 right context, while span B has 4 left context
  # and 0 right context.
  best_score = None
  best_span_index = None
  for (span_index, doc_span) in enumerate(doc_spans):
    end = doc_span.start + doc_span.length - 1
    if position < doc_span.start:
      continue
    if position > end:
      continue
    num_left_context = position - doc_span.start
    num_right_context = end - position
    score = min(num_left_context, num_right_context) + 0.01 * doc_span.length
    if best_score is None or score > best_score:
      best_score = score
      best_span_index = span_index

  return cur_span_index == best_span_index

def _improve_answer_span(doc_tokens, input_start, input_end, tokenizer,
                         orig_answer_text):
  """Returns tokenized answer spans that better match the annotated answer."""

  # The SQuAD annotations are character based. We first project them to
  # whitespace-tokenized words. But then after WordPiece tokenization, we can
  # often find a "better match". For example:
  #
  #   Question: What year was John Smith born?
  #   Context: The leader was John Smith (1895-1943).
  #   Answer: 1895
  #
  # The original whitespace-tokenized answer will be "(1895-1943).". However
  # after tokenization, our tokens will be "( 1895 - 1943 ) .". So we can match
  # the exact answer, 1895.
  #
  # However, this is not always possible. Consider the following:
  #
  #   Question: What country is the top exporter of electornics?
  #   Context: The Japanese electronics industry is the lagest in the world.
  #   Answer: Japan
  #
  # In this case, the annotator chose "Japan" as a character sub-span of
  # the word "Japanese". Since our WordPiece tokenizer does not split
  # "Japanese", we just use "Japanese" as the annotation. This is fairly rare
  # in SQuAD, but does happen.
  tok_answer_text = " ".join(tokenizer.tokenize(orig_answer_text))

  for new_start in range(input_start, input_end + 1):
    for new_end in range(input_end, new_start - 1, -1):
      text_span = " ".join(doc_tokens[new_start:(new_end + 1)])
      if text_span == tok_answer_text:
        return (new_start, new_end)

  return (input_start, input_end)


def convert_examples_to_features(examples, tokenizer, max_seq_length,
                                 doc_stride, max_query_length, is_training,
                                 output_fn, verbose_logging=False):
  """Loads a data file into a list of `InputBatch`s."""

  unique_id = 1000000000

  for (example_index, example) in enumerate(examples):
    query_tokens = tokenizer.tokenize(example.question_text)

    if len(query_tokens) > max_query_length:
      query_tokens = query_tokens[0:max_query_length]

    tok_to_orig_index = []
    orig_to_tok_index = []
    all_doc_tokens = []
    for (i, token) in enumerate(example.doc_tokens):
      orig_to_tok_index.append(len(all_doc_tokens))
      sub_tokens = tokenizer.tokenize(token)
      for sub_token in sub_tokens:
        tok_to_orig_index.append(i)
        all_doc_tokens.append(sub_token)

    tok_start_position = None
    tok_end_position = None
    if is_training and example.is_impossible:
      tok_start_position = -1
      tok_end_position = -1
    if is_training and not example.is_impossible:
      tok_start_position = orig_to_tok_index[example.start_position]
      if example.end_position < len(example.doc_tokens) - 1:
        tok_end_position = orig_to_tok_index[example.end_position + 1] - 1
      else:
        tok_end_position = len(all_doc_tokens) - 1
      (tok_start_position, tok_end_position) = _improve_answer_span(
          all_doc_tokens, tok_start_position, tok_end_position, tokenizer,
          example.orig_answer_text)

    # The -3 accounts for [CLS], [SEP] and [SEP]
    max_tokens_for_doc = max_seq_length - len(query_tokens) - 3

    # We can have documents that are longer than the maximum sequence length.
    # To deal with this we do a sliding window approach, where we take chunks
    # of the up to our max length with a stride of `doc_stride`.
    _DocSpan = collections.namedtuple(  # pylint: disable=invalid-name
        "DocSpan", ["start", "length"])
    doc_spans = []
    start_offset = 0
    while start_offset < len(all_doc_tokens):
      length = len(all_doc_tokens) - start_offset
      if length > max_tokens_for_doc:
        length = max_tokens_for_doc
      doc_spans.append(_DocSpan(start=start_offset, length=length))
      if start_offset + length == len(all_doc_tokens):
        break
      start_offset += min(length, doc_stride)

    for (doc_span_index, doc_span) in enumerate(doc_spans):
      tokens = []
      token_to_orig_map = {}
      token_is_max_context = {}
      segment_ids = []
      tokens.append("[CLS]")
      segment_ids.append(0)
      for token in query_tokens:
        tokens.append(token)
        segment_ids.append(0)
      tokens.append("[SEP]")
      segment_ids.append(0)

      for i in range(doc_span.length):
        split_token_index = doc_span.start + i
        token_to_orig_map[len(tokens)] = tok_to_orig_index[split_token_index]

        is_max_context = _check_is_max_context(doc_spans, doc_span_index,
                                               split_token_index)
        token_is_max_context[len(tokens)] = is_max_context
        tokens.append(all_doc_tokens[split_token_index])
        segment_ids.append(1)
      tokens.append("[SEP]")
      segment_ids.append(1)

      input_ids = tokenizer.convert_tokens_to_ids(tokens)

      # The mask has 1 for real tokens and 0 for padding tokens. Only real
      # tokens are attended to.
      input_mask = [1] * len(input_ids)

      # Zero-pad up to the sequence length.
      while len(input_ids) < max_seq_length:
        input_ids.append(0)
        input_mask.append(0)
        segment_ids.append(0)

      assert len(input_ids) == max_seq_length
      assert len(input_mask) == max_seq_length
      assert len(segment_ids) == max_seq_length

      start_position = None
      end_position = None
      if is_training and not example.is_impossible:
        # For training, if our document chunk does not contain an annotation
        # we throw it out, since there is nothing to predict.
        doc_start = doc_span.start
        doc_end = doc_span.start + doc_span.length - 1
        out_of_span = False
        if not (tok_start_position >= doc_start and
                tok_end_position <= doc_end):
          out_of_span = True
        if out_of_span:
          start_position = 0
          end_position = 0
        else:
          doc_offset = len(query_tokens) + 2
          start_position = tok_start_position - doc_start + doc_offset
          end_position = tok_end_position - doc_start + doc_offset

      if is_training and example.is_impossible:
        start_position = 0
        end_position = 0

      if verbose_logging and example_index < 20:
        tf.compat.v1.logging.info("*** Example ***")
        tf.compat.v1.logging.info("unique_id: %s" % (unique_id))
        tf.compat.v1.logging.info("example_index: %s" % (example_index))
        tf.compat.v1.logging.info("doc_span_index: %s" % (doc_span_index))
        tf.compat.v1.logging.info("tokens: %s" % " ".join(
            [tokenization.printable_text(x) for x in tokens]))
        tf.compat.v1.logging.info("token_to_orig_map: %s" % " ".join(
            ["%d:%d" % (x, y) for (x, y) in six.iteritems(token_to_orig_map)]))
        tf.compat.v1.logging.info("token_is_max_context: %s" % " ".join([
            "%d:%s" % (x, y) for (x, y) in six.iteritems(token_is_max_context)
        ]))
        tf.compat.v1.logging.info("input_ids: %s" % " ".join([str(x) for x in input_ids]))
        tf.compat.v1.logging.info(
            "input_mask: %s" % " ".join([str(x) for x in input_mask]))
        tf.compat.v1.logging.info(
            "segment_ids: %s" % " ".join([str(x) for x in segment_ids]))
        if is_training and example.is_impossible:
          tf.compat.v1.logging.info("impossible example")
        if is_training and not example.is_impossible:
          answer_text = " ".join(tokens[start_position:(end_position + 1)])
          tf.compat.v1.logging.info("start_position: %d" % (start_position))
          tf.compat.v1.logging.info("end_position: %d" % (end_position))
          tf.compat.v1.logging.info(
              "answer: %s" % (tokenization.printable_text(answer_text)))

      feature = InputFeatures(
          unique_id=unique_id,
          example_index=example_index,
          doc_span_index=doc_span_index,
          tokens=tokens,
          token_to_orig_map=token_to_orig_map,
          token_is_max_context=token_is_max_context,
          input_ids=input_ids,
          input_mask=input_mask,
          segment_ids=segment_ids,
          start_position=start_position,
          end_position=end_position,
          is_impossible=example.is_impossible)

      # Run callback
      output_fn(feature)

      unique_id += 1

class FeatureWriter(object):
  """Writes InputFeature to TF example file."""

  def __init__(self, filename, is_training):
    self.filename = filename
    self.is_training = is_training
    self.num_features = 0
    self._writer = tf.python_io.TFRecordWriter(filename)

  def process_feature(self, feature):
    """Write a InputFeature to the TFRecordWriter as a tf.train.Example."""
    self.num_features += 1

    def create_int_feature(values):
      feature = tf.train.Feature(
          int64_list=tf.train.Int64List(value=list(values)))
      return feature

    features = collections.OrderedDict()
    features["unique_ids"] = create_int_feature([feature.unique_id])
    features["input_ids"] = create_int_feature(feature.input_ids)
    features["input_mask"] = create_int_feature(feature.input_mask)
    features["segment_ids"] = create_int_feature(feature.segment_ids)

    if self.is_training:
      features["start_positions"] = create_int_feature([feature.start_position])
      features["end_positions"] = create_int_feature([feature.end_position])
      impossible = 0
      if feature.is_impossible:
        impossible = 1
      features["is_impossible"] = create_int_feature([impossible])

    tf_example = tf.train.Example(features=tf.train.Features(feature=features))
    self._writer.write(tf_example.SerializeToString())

  def close(self):
    self._writer.close()

def main():

    FLAGS = extract_flags()
    tokenizer = tokenization.FullTokenizer(
        vocab_file=FLAGS.vocab_file, do_lower_case=FLAGS.do_lower_case)
    tf.gfile.MakeDirs(FLAGS.squad_dir + "/final_tfrecords_sharded")
    # We write to a temporary file to avoid storing very large constant tensors
    # in memory.
    train_examples = read_squad_examples(
        input_file=FLAGS.train_file, is_training=True,
        version_2_with_negative=FLAGS.version_2_with_negative)
    train_writer = FeatureWriter(
        filename=os.path.join(FLAGS.squad_dir, "final_tfrecords_sharded/train.tf_record"),
        is_training=True)
    convert_examples_to_features(
        examples=train_examples,
        tokenizer=tokenizer,
        max_seq_length=FLAGS.max_seq_length,
        doc_stride=FLAGS.doc_stride,
        max_query_length=FLAGS.max_query_length,
        is_training=True,
        output_fn=train_writer.process_feature,
        verbose_logging=FLAGS.verbose_logging)
    train_writer.close()


    eval_examples = read_squad_examples(
        input_file=FLAGS.predict_file, is_training=False,
        version_2_with_negative=FLAGS.version_2_with_negative)

    eval_writer = FeatureWriter(
        filename=os.path.join(FLAGS.squad_dir, "final_tfrecords_sharded/eval.tf_record"),
        is_training=False)
    eval_features = []

    def append_feature(feature):
      eval_features.append(feature)
      eval_writer.process_feature(feature)

    convert_examples_to_features(
        examples=eval_examples,
        tokenizer=tokenizer,
        max_seq_length=FLAGS.max_seq_length,
        doc_stride=FLAGS.doc_stride,
        max_query_length=FLAGS.max_query_length,
        is_training=False,
        output_fn=append_feature,
        verbose_logging=FLAGS.verbose_logging)
    eval_writer.close()

if __name__ == "__main__":
  main()