                                  plugin,
                                  ["components", "extended"],
                                  exclude_gpus=exclude_gpus,
                                  multiprocess=True,
                                  normalize_method="hist")
              if plugin:
                  aligner.set_batchsize("align", 1)  # Set the batchsize to 1
              aligner.launch()
              logger.debug("Initialized %s Extractor", model)
              self._aligners[model] = aligner
 
</s> remove                                      save_output=self.config["save_filtered"])
 </s> add                                      save_output=self.config["save_filtered"],
                                     disable=disable_filter) </s> remove         self._align = self._load_align(aligner, configfile, normalize_method, re_feed)
 </s> add         self._align = self._load_align(aligner,
                                       configfile,
                                       normalize_method,
                                       re_feed,
                                       disable_filter) </s> remove                     re_feed: int) -> Optional["Aligner"]:
 </s> add                     re_feed: int,
                    disable_filter: bool) -> Optional["Aligner"]:
                                normalize_method="hist",
                                disable_filter=True)
                                  plugin,
                                  ["components", "extended"],
                                  exclude_gpus=exclude_gpus,
                                  multiprocess=True,
                                normalize_method="hist",
                                disable_filter=True)
              if plugin:
                  aligner.set_batchsize("align", 1)  # Set the batchsize to 1
              aligner.launch()
              logger.debug("Initialized %s Extractor", model)
              self._aligners[model] = aligner
keep keep keep keep replace keep keep keep keep keep
 Bugfix: Manual tool. Explicitly disable aligner filters 
tools/manual/manual.py