          self.args = arguments
          set_system_verbosity()
  
          dest_format = self.get_dest_format()
          self.alignments = AlignmentData(self.args.alignments_file,
                                          dest_format)
  
      def get_dest_format(self):
          """ Set the destination format for Alignments """
          dest_format = None
          if (hasattr(self.args, 'alignment_format')
 
</s> remove         if (hasattr(self.args, 'alignment_format')
                and self.args.alignment_format):
 </s> add         if hasattr(self.args, 'alignment_format') and self.args.alignment_format:
        self.alignments = AlignmentData(self.args.alignments_file, dest_format)
          self.args = arguments
          set_system_verbosity()
  
          dest_format = self.get_dest_format()
        self.alignments = AlignmentData(self.args.alignments_file, dest_format)
        self.alignments = AlignmentData(self.args.alignments_file, dest_format)
  
      def get_dest_format(self):
          """ Set the destination format for Alignments """
          dest_format = None
          if (hasattr(self.args, 'alignment_format')
keep keep keep keep replace replace keep keep keep keep keep
 Add Face Hashes to Alignments (#550)

* Convert main scripts to use face hashes

* Alignment tool: Use hashes, add logging, add face rename function

* More logging. Update Manual tool to work with hashing 
tools/alignments.py