                      [os.path.basename(f) for f in retval])
          return retval
  
      def _validate_inputs(self,
                           filter_files: Optional[List[str]],
                           nfilter_files: Optional[List[str]]) -> Tuple[List[str], List[str]]:
          """ Validates that the given filter/nfilter files exist, are image files and are unique
  
          Parameters
          ----------
          filter_files: list or ``None``
 
</s> remove                  filter_files: Optional[List[str]],
                 nfilter_files: Optional[List[str]],
 </s> add                  filter_files: list[str] | None,
                 nfilter_files: list[str] | None, </s> remove     def _get_alignments_locations(self) -> Dict[str, List[Optional[str]]]:
 </s> add     def _get_alignments_locations(self) -> dict[str, list[str | None]]: </s> remove     def _get_log_filename(cls, folder: str, filenames: List[str]) -> str:
 </s> add     def _get_log_filename(cls, folder: str, filenames: list[str]) -> str: </s> remove         retval: List[List[str]] = []
 </s> add         retval: list[list[str]] = [] </s> remove     def _parse_configs(self, config_files: List[str]) -> str:
 </s> add     def _parse_configs(self, config_files: list[str]) -> str:
                         filter_files: list[str] | None,
                         nfilter_files: list[str] | None) -> tuple[list[str], list[str]]:
                      [os.path.basename(f) for f in retval])
          return retval
  
      def _validate_inputs(self,
                         filter_files: list[str] | None,
                         nfilter_files: list[str] | None) -> tuple[list[str], list[str]]:
                         filter_files: list[str] | None,
                         nfilter_files: list[str] | None) -> tuple[list[str], list[str]]:
          """ Validates that the given filter/nfilter files exist, are image files and are unique
  
          Parameters
          ----------
          filter_files: list or ``None``
keep keep keep keep replace replace keep keep keep keep keep
 Rebase code (#1326)

* Remove tensorflow_probability requirement

* setup.py - fix progress bars

* requirements.txt: Remove pre python 3.9 packages

* update apple requirements.txt

* update INSTALL.md

* Remove python<3.9 code

* setup.py - fix Windows Installer

* typing: python3.9 compliant

* Update pytest and readthedocs python versions

* typing fixes

* Python Version updates
  - Reduce max version to 3.10
  - Default to 3.10 in installers
  - Remove incompatible 3.11 tests

* Update dependencies

* Downgrade imageio dep for Windows

* typing: merge optional unions and fixes

* Updates
  - min python version 3.10
  - typing to python 3.10 spec
  - remove pre-tf2.10 code
  - Add conda tests

* train: re-enable optimizer saving

* Update dockerfiles

* Update setup.py
  - Apple Conda deps to setup.py
  - Better Cuda + dependency handling

* bugfix: Patch logging to prevent Autograph errors

* Update dockerfiles

* Setup.py - Setup.py - stdout to utf-8

* Add more OSes to github Actions

* suppress mac-os end to end test 
scripts/extract.py