  class Alignments():
      """ Perform tasks relating to alignments file """
      def __init__(self, arguments):
          self.args = arguments
          self.set_verbosity(arguments.verbose)
  
          dest_format = self.get_dest_format()
          self.alignments = AlignmentData(self.args.alignments_file,
                                          dest_format,
                                          self.args.verbose)
 
</s> remove                                         dest_format,
                                        self.args.verbose)

    @staticmethod
    def set_verbosity(verbose):
        """ Set the system output verbosity """
        lvl = '0' if verbose else '2'
        set_system_verbosity(lvl)
 </s> add                                         dest_format) </s> remove         self.verbose = self.args.verbose
 </s> add  </s> remove         self.verbose = arguments.verbose
 </s> add 
        set_system_verbosity()
  class Alignments():
      """ Perform tasks relating to alignments file """
      def __init__(self, arguments):
          self.args = arguments
        set_system_verbosity()
  
          dest_format = self.get_dest_format()
          self.alignments = AlignmentData(self.args.alignments_file,
                                          dest_format,
                                          self.args.verbose)
keep keep keep keep replace keep keep keep keep keep
 Logging (#541)

* Convert prints to logger. Further logging improvements. Tidy  up

* Fix system verbosity. Allow SystemExit

* Fix reload extract bug

* Child Traceback handling

* Safer shutdown procedure

* Add shutdown event to queue manager

* landmarks_as_xy > property. GUI notes + linting. Aligner bugfix

* fix FaceFilter. Enable nFilter when no Filter is supplied

* Fix blurry face filter

* Continue on IO error. Better error handling

* Explicitly print stack trace tocrash log

* Windows Multiprocessing bugfix

* Add git info and conda version to crash log

* Windows/Anaconda mp bugfix

* Logging fixes for training 
tools/alignments.py