 ## htsjdk.samtools.metrics.StringHeader
-# CollectHsMetrics BAIT_INTERVALS=[/tmp/tmpQWQ7TC/files/000/dataset_2.dat] TARGET_INTERVALS=[/tmp/tmpQWQ7TC/files/000/dataset_3.dat] INPUT=picard_CollectHsMetrics_bam OUTPUT=/tmp/tmpQWQ7TC/files/000/dataset_4.dat MINIMUM_MAPPING_QUALITY=20 MINIMUM_BASE_QUALITY=20 CLIP_OVERLAPPING_READS=false COVERAGE_CAP=200 TMP_DIR=[/tmp] VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    METRIC_ACCUMULATION_LEVEL=[ALL_READS] NEAR_DISTANCE=250 SAMPLE_SIZE=10000 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
+# CollectHsMetrics BAIT_INTERVALS=[/tmp/tmpMGxxyd/files/000/dataset_2.dat] TARGET_INTERVALS=[/tmp/tmpMGxxyd/files/000/dataset_3.dat] INPUT=picard_CollectHsMetrics_bam OUTPUT=/tmp/tmpMGxxyd/files/000/dataset_4.dat MINIMUM_MAPPING_QUALITY=20 MINIMUM_BASE_QUALITY=20 CLIP_OVERLAPPING_READS=true COVERAGE_CAP=200 TMP_DIR=[/tmp] VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    METRIC_ACCUMULATION_LEVEL=[ALL_READS] NEAR_DISTANCE=250 SAMPLE_SIZE=10000 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
 ## htsjdk.samtools.metrics.StringHeader
-# Started on: Wed May 15 07:19:05 UTC 2019
+# Started on: Thu May 30 21:41:26 UTC 2019
 
 ## METRICS CLASS	picard.analysis.directed.HsMetrics
 BAIT_SET	GENOME_SIZE	BAIT_TERRITORY	TARGET_TERRITORY	BAIT_DESIGN_EFFICIENCY	TOTAL_READS	PF_READS	PF_UNIQUE_READS	PCT_PF_READS	PCT_PF_UQ_READS	PF_UQ_READS_ALIGNED	PCT_PF_UQ_READS_ALIGNED	PF_BASES_ALIGNED	PF_UQ_BASES_ALIGNED	ON_BAIT_BASES	NEAR_BAIT_BASES	OFF_BAIT_BASES	ON_TARGET_BASES	PCT_SELECTED_BASES	PCT_OFF_BAIT	ON_BAIT_VS_SELECTED	MEAN_BAIT_COVERAGE	MEAN_TARGET_COVERAGE	MEDIAN_TARGET_COVERAGE	MAX_TARGET_COVERAGE	PCT_USABLE_BASES_ON_BAIT	PCT_USABLE_BASES_ON_TARGET	FOLD_ENRICHMENT	ZERO_CVG_TARGETS_PCT	PCT_EXC_DUPE	PCT_EXC_MAPQ	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_OFF_TARGET	FOLD_80_BASE_PENALTY	PCT_TARGET_BASES_1X	PCT_TARGET_BASES_2X	PCT_TARGET_BASES_10X	PCT_TARGET_BASES_20X	PCT_TARGET_BASES_30X	PCT_TARGET_BASES_40X	PCT_TARGET_BASES_50X	PCT_TARGET_BASES_100X	HS_LIBRARY_SIZE	HS_PENALTY_10X	HS_PENALTY_20X	HS_PENALTY_30X	HS_PENALTY_40X	HS_PENALTY_50X	HS_PENALTY_100X	AT_DROPOUT	GC_DROPOUT	HET_SNP_SENSITIVITY	HET_SNP_Q	SAMPLE	LIBRARY	READ_GROUP
-dataset_2	16569	303	183	0.60396	543	543	543	1	1	543	1	48712	48712	1545	8432	38735	924	0.204816	0.795184	0.154856	5.09901	5.04918	4	11	0.031614	0.018907	1.734388	0	0	0	0	0	0.999528	2.52459	1	0.994536	0.153005	0	0	0	0	0		0	0	0	0	0	0	0	0	0.880366	9			
+dataset_2	16569	303	183	0.60396	543	543	543	1	1	543	1	48712	48712	1545	8432	38735	911	0.204816	0.795184	0.154856	5.09901	4.978142	4	11	0.031614	0.018641	1.734388	0	0	0	0	0.008088	0.99146	2.489071	1	0.994536	0.125683	0	0	0	0	0		0	0	0	0	0	0	0	0	0.879902	9			
 
 ## HISTOGRAM	java.lang.Integer
 coverage_or_base_quality	high_quality_coverage_count	unfiltered_baseq_count

2	71	0
3	13	0
4	13	0
5	18	0
6	6	0
7	4	0
8	10	0
9	19	0
10	23	0
11	5	0
12	0	0
13	0	0

52	0	1
53	0	4
54	0	4
55	0	2
56	0	8
57	0	4
58	0	11
59	0	2
60	0	14
61	0	17
62	0	26
63	0	20
64	0	21
65	0	65
66	0	125
67	0	56
68	0	70
69	0	69
70	0	95
