 
 
 
-
-################################################################################
-#
-# Table structure for table 'repeat_consensus'
-#
-# repeat_class examples: SINE, LINE, DNA Transposon, Retroviral LTR,
-# Satellite, Tandem
+/**@table repeat_consensus
+@desc Stores consensus sequences obtained from analysing repeat features.
+
+@column repeat_consensus_id              Primary key, internal identifier.
+@column repeat_name                      Repeat name.
+@column repeat_class                     E.g. 'Satellite', 'tRNA', 'LTR'.
+@column repeat_type                      E.g. 'Satellite repeats', 'Tandem repeats', 'Low complexity regions'.
+@column repeat_consensus                 Repeat consensus sequence.
+
+*/
+
 
 CREATE TABLE repeat_consensus (
 

) COLLATE=latin1_swedish_ci ENGINE=MyISAM;



################################################################################
#
# Table structure for table 'coord_system'
#

CREATE TABLE coord_system (



) ENGINE=MyISAM DEFAULT CHARSET=latin1;


/**@table ditag_feature
@desc Describes where ditags hit on the genome. Represents a mapped ditag object in the EnsEMBL database. These are the original tags separated into start ("L") and end ("R") parts if applicable, successfully aligned to the genome.
Two DitagFeatures usually relate to one parent Ditag. Alternatively there are CAGE tags e.g. which only have a 5\'tag ("F"). 

@column ditag_feature_id          Primary key, internal identifier.
@column ditag_id                  Foreign key references to the @link ditag table.
@column ditag_pair_id             Ditag pair id.
@column seq_region_id             Foreign key references to the @link seq_region table.
@column seq_region_start          Sequence start position.
@column seq_region_end            Sequence end position.
@column seq_region_strand         Sequence region strand: 1 - forward; -1 - reverse.
@column analysis_id               Foreign key references to the @link analysis table.
@column hit_start                 Alignment hit start position.
@column hit_end                   Alignment hit end position.
@column hit_strand                Alignment hit strand: 1 - forward; -1 - reverse.
@column cigar_line                Used to encode gapped alignments. 
@column ditag_side                Ditag side: L - start, R - end, F - 5\'tag only

@see ditag

*/


CREATE TABLE ditag_feature (

