   FOREIGN KEY (homology_id) REFERENCES homology(homology_id),
   FOREIGN KEY (member_id) REFERENCES member(member_id),
   FOREIGN KEY (peptide_member_id) REFERENCES member(member_id),
-  FOREIGN KEY (peptide_align_feature_id) REFERENCES peptide_align_feature(peptide_align_feature_id),
+#  FOREIGN KEY (peptide_align_feature_id) REFERENCES peptide_align_feature(peptide_align_feature_id),
 
   UNIQUE homology_member_id (homology_id,member_id),
   KEY (homology_id),
   KEY (member_id),
-  KEY (peptide_member_id),
-  KEY (peptide_align_feature_id)
+  KEY (peptide_member_id) #,
+#  KEY (peptide_align_feature_id)
 ) COLLATE=latin1_swedish_ci;
 
 

  homology_id                 int(10) unsigned NOT NULL, # FK homology.homology_id
  member_id                   int(10) unsigned NOT NULL, # FK member.member_id
  peptide_member_id           int(10) unsigned, # FK member.member_id
  peptide_align_feature_id    int(10) unsigned, # FK peptide_align_feature.peptide_align_feature_id
  cigar_line                  mediumtext,
  cigar_start                 int(10),
  cigar_end                   int(10),

# conventions taken from the new clean schema of EnsEMBL
# use lower case and underscores
# internal ids are integers named tablename_id
# same name is given in foreign key relations
