anchor.diff:  
   <script type="text/javascript" src="js/SequenceSearch.js"></script>
   
  -<!--
  -<link rel="stylesheet" type="text/css" href="styles/selectTrack.css" />
  -<link rel="stylesheet" type="text/css" href="styles/search_sequence.css" />
  -<link rel="stylesheet" type="text/css" href="jslib/jquery-ui-1.8.9.custom/jquery-ui-1.8.9.custom.css" />
  -<link rel="stylesheet" type="text/css" href="http://view.jqueryui.com/menubar/themes/base/jquery.ui.menubar.css" />
  -<script type="text/javascript" src="jslib/jquery-1.7.1.min.js"></script>
  -<script type="text/javascript" src="jslib/jquery-ui-1.8.9.custom/jquery-ui-1.8.9.custom.min.js"></script>
  -
  -
  -<script type="text/javascript" src="http://view.jqueryui.com/menubar/ui/jquery.ui.menubar.js"></script>
  -
  -
  -
  -
  --->
  +
  +
  +
  +
  +
  +
   
   <style>
   label:nth-child(even) {
  
positive.code: if ("POST".equalsIgnoreCase(request.getMethod())) {
      // Form was submitted.
      out.println("<p>Settings saved</p>");
      
  	serverConfig.setDataStoreDirectory(request.getParameter("datastore_directory"));
  	serverConfig.setGBOLMappingFile(request.getParameter("mapping_file"));
  	serverConfig.setDefaultMinimumIntronSize(Integer.parseInt(request.getParameter("minimum_intron_size")));
  
negative.code: 	$("#use_cds_for_new_transcripts").attr("value","<% out.print(serverConfig.getUseCDS()); %>");
  	$("#track_name_comparator").attr("value","<% out.print(serverConfig.getTrackNameComparator()); %>");
  	$("#overlapper_class").attr("value","<% out.print(serverConfig.getOverlapperClass()); %>");
  
  
  
  
  	$("#database_username").attr("value","<% out.print(serverConfig.getUserDatabase().getUserName()); %>");
  	$("#database_password").attr("value","<% out.print(serverConfig.getUserDatabase().getPassword()); %>");
  	$("#database_driver").attr("value","<% out.print(serverConfig.getUserDatabase().getDriver()); %>");
  	$("#database_url").attr("value","<% out.print(serverConfig.getUserDatabase().getURL()); %>");
  
  	<%
  	//Get tracklist configuration
  	Map<String,ServerConfiguration.TrackConfiguration> trackmap=serverConfig.getTracks();
  	for(String trackname : trackmap.keySet()) {
  		ServerConfiguration.TrackConfiguration track=trackmap.get(trackname);
  		out.println("tracks_configuration_list[\""+track.getName()+
  		                  "\"]={ \"organism\": \""+track.getOrganism()+"\","+ 
  		                        "\"translation_table\": \""+track.getTranslationTable()+"\","+
  		                        "\"sequence_cvterm\": \""+track.getSourceFeature().getType()+"\","+
  		                        "\"refseqs_json\": \""+track.getSourceFeature().getSequenceDirectory()+"\","+
  		                        "\"donor_site\": \""+track.getSpliceDonorSites()+"\","+
  		                        "\"acceptor_site\": \""+track.getSpliceAcceptorSites()+"\""+
  		
  				"};");
  		
  	}
  	%>
  	
  	
  	var init_refseqs_config=function(){
  		var track_selection=$("#track_options_list").attr("value");
  		$("#organism_name").attr("value",tracks_configuration_list[track_selection].organism);
  		$("#refseqs_json").attr("value",tracks_configuration_list[track_selection].refseqs_json);
  		$("#sequence_cvterm").attr("value",tracks_configuration_list[track_selection].sequence_cvterm);
  		$("#acceptor_site").attr("value",tracks_configuration_list[track_selection].acceptor_site);
  		$("#donor_site").attr("value",tracks_configuration_list[track_selection].donor_site);
  		$("#translation_table").attr("value",tracks_configuration_list[track_selection].translation_table);
  	}
  	
  	$("#track_options_list").click(init_refseqs_config);
  	init_refseqs_config();
  }
  
  
  