anchor.diff:  			       out.println("<Br><Br>\n");
   	}
   	out.println("<a href=\"#top\">top</a>\n");
  +*/
  +}
  +
  +else	{
  +System.out.println("Doing transitional");
  +//process the transitional report
  +ResultsContainer resultsContainer = (ResultsContainer) session.getAttribute(sample);
  +String mode =  (String) session.getAttribute("report");
  +if(mode.equals("gene"))
  +	out.println(ReportGenerator.geneExprSampleView(resultsContainer, theColors));
  +else if( mode.equals("copy"))
  +	out.println(ReportGenerator.copyNumberSampleView(resultsContainer, theColors));
  +else
  +	out.println("Error somewhere");
  +	
  +//session.removeAttribute("resultsContainer");
  +//session.removeAttribute("report");
  +}
  +
  +
   %>
   </body>
   </html>
positive.code: //	String theColors[] = { "738FE6","B6C5F2","DAE1F9","8691B3","B3B9CC","6D7BA6","99A1B9" };
  	String theColors[] = { "B6C5F2","F2E3B5","DAE1F9","C4F2B5","819BE9", "E9CF81" };
  
  	QueryCollection queryCollection = (QueryCollection) (session.getAttribute(Constants.QUERY_KEY));
  
  	CompoundQuery myCompoundQuery = queryCollection.getCompoundQuery();
  
  
  	if(queryCollection != null)	{
  		//out.println("<a href=\"#queryInfo\">Query Information</a><Br>\n");
  		out.println(ReportGenerator.displayReport(queryCollection, theColors, false));
  	}
  	else
  		out.println("QueryCollection is NULL");
  		
  
      out.println("<Br><Br><Br><a name=\"queryInfo\"></a>\n");	
  	if(!myCompoundQuery.toString().equals(""))	{
  		out.println("<B>Compound Query:</b> " + myCompoundQuery.toString() + "<br><br>");
  	}
  
negative.code: <Br>
  <a name="top"></a>
  <%
  out.println("sample we want: " + request.getParameter("s"));
  
  //	String theColors[] = {"5C73B7", "B1BCDD" };	
  //	String theColors[] = {"5C73B7", "B1BCDD", "DDD2B1", "8697CA", "B7A15C", "CFD4E6", "404F80", "5C71B5" };
  