anchor.diff:  
   <p>Data are uploaded to TreeBASE in the NEXUS format, which is used by many popular phylogenetics software packages (e.g., MacClade and Mesquite: Maddison and Maddison, 1992; PAUP: Swofford, 1993). These programs allow other file formats (e.g. Hennig86, PHYLIP, etc.) to be converted into NEXUS.  TreeBASE uses <a href="http://mesquiteproject.org/" title="Mesquite" target="_blank">Mesquite</a> to parse incoming data: <strong>if your data cannot be parsed by Mesquite then they will not be parsed by TreeBASE</strong>, so it's always a good idea to save your data in Mesquite prior to uploading. For example: </p>
   <ul>
  -<li> Launch <a href="http://mesquiteproject.org/" title="Mesquite" target="_blank">Mesquite</a> 
  -<li>Under the <em>File Menu</em> select <em>Open File</em> and choose your character matrix
  -<li>If your tree(s) are stored in a separate file, under the <em>File Menu</em> select 
  -<em>Include File...</em> and choose your tree file 
  +<li> Launch <a href="http://mesquiteproject.org/" title="Mesquite" target="_blank">Mesquite</a> </li>
  +<li>Under the <em>File Menu</em> select <em>Open File</em> and choose your character matrix</li>
  +<li>If your tree(s) are stored in a separate file, under the <em>File Menu</em> select
  +  <em>Include File...</em> and choose your tree file  </li>
   <li>By clicking on &quot;Taxa,&quot; &quot;Character Matrix,&quot; or &quot;Trees from treefile.tre&quot; from the project margin on the left, you can rename 
     them: these names will be carried through into TreeBASE, so it's useful to give them informative names. For example, you could name your matrix &quot;Hymenopteran COI Alignment&quot;
  -or your tree block &quot;Set of 5 MP Trees from COI Analysis&quot;
  -<li>By clicking on the <em>Tree</em> icon from the project margin on the left, you can examine your trees. 
  -<ul>
  -  <li>Use the <em>Reroot at Branch</em> tool to reorient the tree the way it appears in the figures of your paper.  </li>
  -  <li>Under the<em> Drawing Menu</em>, 
  -    you can view the relative branch lengths in your tree by selecting <em>Branches Proportional to Lengths</em>  </li>
  -</ul>
  -<li>To rename your trees, click the <em>List &amp; Manage Trees</em> icon from the project margin on the left. Renaming your trees makes it easy to identify them after uploading to TreeBASE.</li>
  +or your tree block &quot;Set of 5 MP Trees from COI Analysis&quot;</li>
  +<li>By clicking on the <em>Tree</em> icon from the project margin on the left, you can examine your trees.
  +  <ul>
  +    <li>Use the <em>Reroot at Branch</em> tool to reorient the tree the way it appears in the figures of your paper</li>
  +    <li>Under the<em> Drawing Menu</em>, 
  +      you can view the relative branch lengths in your tree by selecting <em>Branches Proportional to Lengths</em></li>
  +    </ul>
  +</li>
  +
  +  <li>To rename your trees, click the <em>List &amp; Manage Trees</em> icon from the project margin on the left. Renaming your trees makes it easy to identify them after uploading to TreeBASE.</li>
     <li>To view or edit the taxon labels, click the <em>Taxa</em> icon from the project margin on the left. Verify that the taxon labels comply with TreeBASE's requirements (see below) and edit as needed</li>
     <li>If all looks good, select <em>Save File</em> from the <em>File</em> menu. 
  -    Your NEXUS file is now ready to upload to TreeBASE
  -  </li>
  +    Your NEXUS file is now ready to upload to TreeBASE  </li>
     </ul>   
   <p>The most frequent error in submitting data to TreeBASE is when taxon labels in the matrices do not match with taxon labels in the trees. Using the above procedure with Mesquite, however, will avoid the problem. </p>
   
  
positive.code: <h2>General Requirements</h2>
  
  <ul>
      <li>The paper must be published in a peer-reviewed journal or book. Data for manuscripts that are "accepted with minor revision," "accepted," or "in press" can be published in TreeBASE. Data for manuscripts that are "submitted" or "in preparation" must not move beyond the initial "in progress" stage of TreeBASE submission.</li>
      
      <li>The names of all authors listed with the paper must be included.</li>
      
  
negative.code: <h3>Preparation of taxon labels</h3>
  
  <ul>
      <li>Do not abbreviate taxon names (e.g. write &quot;Homo sapiens&quot;, not &quot;H. sapiens&quot;)</li>
      
      <li>The NEXUS file should use underscores (&quot;_&quot;) to represent spaces</li>
      
      <li>Avoid using quotation marks, brackets, parentheses, commas, colons, and semicolons.</li>
      
      <li>Avoid using codes for non-redundant names (e.g. write &quot;Drosophila melanogaster&quot;, not &quot;DMelan45GRX&quot;). However, it is acceptable two write &quot;Drosophila melanogaster 45GRX&quot;.</li>
      
      <li>Separate the name of parasites and hosts with &quot;ex.,&quot; e.g. &quot;Wolbachia sp. ex. Drosophila melanogaster&quot;</li>
      
  </ul>
  
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