anchor.diff:  	CompoundQuery myCompoundQuery = queryCollection.getCompoundQuery();
   
   	if(queryCollection != null)	{
  -		//out.println("<a href=\"#queryInfo\">Query Information</a><Br>\n");
   		out.println(ReportGenerator.displayReport(queryCollection, theColors, false, request, links));
  +		request.setAttribute(NautilusConstants.QUERY_KEY,queryCollection);
   	}
   	else
   		out.println("QueryCollection is NULL");
  
positive.code: <%
  	System.out.println("sample we want: " + request.getParameter("s"));
  
  //	String theColors[] = {"5C73B7", "B1BCDD" };	
  //	String theColors[] = {"5C73B7", "B1BCDD", "DDD2B1", "8697CA", "B7A15C", "CFD4E6", "404F80", "5C71B5" };
  //	String theColors[] = {"CFD4E6", "E6DCCF", "E5E6CF", "DFCFE6" };
  //	String theColors[] = {"8E95C2", "F2F3F8", "9DA8CD", "E1E4EF", "AEB7D5", "BFC6DE", "D0D5E7"  };
  //	String theColors[] = {"BFDEFF", "608DBF", "E6F2FF", "80BCFF", "BFDEFF" };
  	
  //	String theColors[] = { "738FE6","B6C5F2","DAE1F9","8691B3","B3B9CC","6D7BA6","99A1B9" };
  	String theColors[] = { "B6C5F2","F2E3B5","DAE1F9","C4F2B5","819BE9", "E9CF81" };
  
  String links = "";
  String sample = request.getParameter("s");
  session.setAttribute("csv", sample);
  //get the results container from the session with sample as key
  if(session.getAttribute(sample) == null)
  {
  
negative.code: }
  
  else	{
  	System.out.println("Doing transitional");
  	//process the transitional report
  	ResultsContainer resultsContainer = (ResultsContainer) session.getAttribute(sample);
  	String mode =  (String) request.getParameter("report");
  	if(mode.equals("gene"))
  		out.println(ReportGenerator.geneExprSampleView(resultsContainer, theColors));
  	else if( mode.equals("copy"))
  		out.println(ReportGenerator.copyNumberSampleView(resultsContainer, theColors));
  	else
  		out.println("Error somewhere");
  		
  	session.setAttribute("csv", resultsContainer);
  	session.setAttribute("mode", mode);
  	System.out.println("set things in session");
  	
  	//session.removeAttribute("resultsContainer");
  	session.removeAttribute("report");
  }
  
  
  