anchor.diff:      }
   </style>
   
  +<script>
  +    var data_type_copy_no;
  +    var data_type_mrna;
  +    var gene;
  +    var case_set = [];
  +    var mutations = [];
  +    var copy_no = [];
  +    var mrna = [];
  +    var rppa = [];
  +    var dna_methylation = [];
  +    var result_set = new Array(5);
  +    for ( var i = 0 ; i< result_set.length; i++) {
  +        result_set[i] = new Array();
  +    }
  +    var genetic_profile_mutations = [
  +        "mutations", "Mutations"
  +    ];
  +    var genetic_profile_mrna = [
  +        ["mrna", "mRNA expression (microarray)"],
  +        ["mrna_median", "mRNA expression (all genes)"],
  +        ["mrna_median_Zscores", "mRNA Expression z-Scores (microarray)"],
  +        ["mrna_merged_median_Zscores", "mRNA/miRNA expression Z-scores (all genes)"],
  +        ["mrna_U133", "mRNA expression (U133 microarray only)"],
  +        ["rna_seq_v2_mrna", "mRNA expression (RNA Seq V2 RSEM)"],
  +        ["rna_seq_v2_mrna_median_Zscores", "mRNA Expression z-Scores (RNA Seq V2 RSEM)"],
  +        ["mirna", "microRNA expression"],
  +        ["mirna_median_Zscores", "microRNA expression Z-scores"],
  +        ["mrna_zbynorm", "mRNA Expression Z-Scores vs Normals"],
  +        ["mrna_znormal", "mRNA Z-scores vs normal fat"],
  +        ["mrna_outliers", "mRNA Expression Outliers"],
  +        ["mrna_outlier", "mRNA outliers"]
  +    ];
  +    var genetic_profile_copy_no = [
  +        ["gistic", "Putative copy-number alterations from GISTIC"],
  +        ["log2CNA", "Log2 copy-number values"],
  +        ["cna", "Putative copy-number alterations (RAE)"]
  +    ];
  +    var genetic_profile_rppa = [
  +        "RPPA_protein_level", "RPPA protein/phosphoprotein level"
  +    ];
  +    var genetic_profile_dna_methylation = [
  +        "methylation_hm27", "Methylation (HM27)"
  +    ];
  +    var plot_type_list = [
  +        ["mrna_vs_copy_no", "mRNA vs. Copy Number"],
  +        ["mrna_vs_dna_mythelation", "mRNA vs. DNA Methylation"],
  +        ["rppa_protein_level_vs_mrna", "RPPA Protein Level vs. mRNA"]
  +    ];
  +</script>
  +
   <%
       String cancer_study_id = (String)request.getParameter("cancer_study_id");
       String case_set_id = (String)request.getParameter("case_set_id");
  
positive.code:     //Create SVG Axis
  
      //Axis Annotation for GISTIC
      if (copy_no_type == "gistic") {
          var textSet = ["Homdel", "Hetloss", "Diploid", "Gain", "Amp"];
          var ticksTextSet = [];
          var tmp_ticks_text_index = 0;
          for (var i = min_x + 2; i = max_x + 3; i++) {
              ticksTextSet[tmp_ticks_text_index] = textSet[i];
              tmp_ticks_text_index += 1;
          }
          svg.append("g")
                  .attr("class","axis")
                  .attr("transform", "translate(0, 680)")
                  .call(xAxis.ticks(ticksTextSet.length))
                  .selectAll("text")
                  .data(ticksTextSet)
  
negative.code:     }
      var min_x = Math.min.apply(Math, tmp_xData);
      var max_x = Math.max.apply(Math, tmp_xData);
      var edge_x = (max_x - min_x) * 0.2;
  
      var tmp_yData = [];
      var tmp_yIndex = 0;
  