anchor.diff: -<%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c"%>
  -<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="f"%>
  -<%@ taglib uri="http://ebi.ac.uk/ae3/functions" prefix="u"%>
  +<%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c" %>
  +<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="f" %>
  +<%@ taglib uri="http://ebi.ac.uk/ae3/functions" prefix="u" %>
   <%@ taglib uri="http://java.sun.com/jsp/jstl/fmt" prefix="fmt" %>
   <%--
     ~ Copyright 2008-2010 Microarray Informatics Team, EMBL-European Bioinformatics Institute
  
positive.code: <table style="border-bottom:1px solid #DEDEDE;margin:0 0 10px 0;width:100%;height:30px;">
      <tr>
          <td align="left" valign="bottom" width="55" style="padding-right:10px;">
              <a href="${pageContext.request.contextPath}/" title="Gene Expression Atlas Homepage"><img border="0" width="55" src="${pageContext.request.contextPath}/images/atlas-logo.png" alt="Gene Expression Atlas"/></a>
          </td>
          <td align="right" valign="bottom">
              <a href="${pageContext.request.contextPath}/">home</a> |
              <a href="${pageContext.request.contextPath}/help/AboutAtlas">about the project</a> |
              <a href="${pageContext.request.contextPath}/help/AtlasFaq">faq</a> |
  	    <a id="feedback_href" href="javascript:showFeedbackForm()">feedback</a> <span id="feedback_thanks" style="font-weight:bold;display:none">thanks!</span> |
  	    <a target="_blank" href="http://arrayexpress-atlas.blogspot.com">blog</a> |
  	    <a href="${pageContext.request.contextPath}/help/AtlasDasSource">das</a> |
              <a href="${pageContext.request.contextPath}/help/AtlasApis">api</a> <b>new</b> |
              <a href="${pageContext.request.contextPath}/help">help</a>
          </td>
  
negative.code: 
  
  <table cellspacing="0" cellpadding="0" border="0" width="100%">
      <tr>
          <td style="vertical-align:top;">
              <table width="100%" style="background-color: white" class="geneAnnotations">
  
                  <tr>
                      <td align="left" class="geneName">${atlasGene.geneName}
                          <div style="font:normal"><c:import url="../includes/apilinks.jsp"><c:param name="apiUrl"
                                                                                                     value="geneIs=${atlasGene.geneIdentifier}"/></c:import></div>
                      </td>
                      <td style="vertical-align: text-bottom">${atlasGene.geneSpecies}</td>
                      <td rowspan="">
  
                      </td>
                  </tr>
  
                  <tr>
                      <td colspan="2" align="left" style="padding-bottom:1em;padding-top:1em">
                          ${f:escapeXml(atlasGeneDescription)}
                      </td>
                  </tr>
  
  
                  <c:set var="synonyms">
                      <c:forEach items="${atlasProperties.geneAutocompleteNameFields}" var="prop" varStatus="s"><c:if
                              test="${!empty atlasGene.geneProperties[prop]}">${u:join(atlasGene.geneProperties[prop], ", ")}
                          <c:if test="${!s.last}">, </c:if></c:if></c:forEach>
                  </c:set>
                  <c:if test="${!empty synonyms}">
                      <tr>
                          <td class="geneAnnotHeader">Synonyms</td>
                          <td align="left">${synonyms}</td>
                      </tr>
                  </c:if>
  
                  <c:if test="${!empty orthologs}">
                      <tr>
                          <td class="geneAnnotHeader">Orthologs</td>
  
                          <td align="left">
                              <c:set var="orthoIds" value=""/>
                              <c:forEach var="ortholog" items="${orthologs}">
                                  <a href="${pageContext.request.contextPath}/gene/${ortholog.geneIdentifier}"
                                     target="_self"
                                     title="Gene Atlas Data For ${ortholog.geneName} (${ortholog.geneSpecies})">${ortholog.geneName}
                                      (${ortholog.geneSpecies})</a>&nbsp;
                                  <c:set var="orthoIds" value="${orthoIds}${ortholog.geneIdentifier}+"/>
                              </c:forEach>
                              (<a href="${pageContext.request.contextPath}/qrs?gprop_0=&gval_0=${orthoIds}${atlasGene.geneIdentifier}&fexp_0=UP_DOWN&fact_0=&specie_0=&fval_0=(all+conditions)&view=hm"
                                  target="_self">Compare orthologs</a>)
                          </td>
                      </tr>
                  </c:if>
  
                  <c:forEach items="${atlasGene.genePropertiesIterator}" var="prop">
                      <c:if test="${!u:isIn(atlasProperties.geneAutocompleteNameFields, prop) && !u:isIn(atlasProperties.genePageIgnoreFields, prop)}">
                          <tr class="${u:isIn(atlasProperties.genePageDefaultFields, prop) ? '' : 'expandable'}"
                              style="${u:isIn(atlasProperties.genePageDefaultFields, prop) ? '' : 'display:none'}">
                              <td class="geneAnnotHeader">${f:escapeXml(atlasProperties.curatedGeneProperties[prop])}</td>
                              <td align="left">
                                  <c:choose>
                                      <c:when test="${!empty atlasProperties.genePropertyLinks[prop]}">
                                          <c:forEach items="${atlasGene.geneProperties[prop]}" var="v" varStatus="s">
                                              <a href="${f:replace(atlasProperties.genePropertyLinks[prop], '$$', v)}"
                                                 target="_blank">${f:escapeXml(v)}</a><c:if test="${!s.last}">, </c:if>
                                          </c:forEach>
                                      </c:when>
                                      <c:otherwise>
                                          ${u:limitedJoin(atlasGene.geneProperties[prop], 5, ", ", "...")}
                                      </c:otherwise>
                                  </c:choose>
                              </td>
                          </tr>
                      </c:if>
                  </c:forEach>
  
                  <tr>
                      <td class="geneAnnotHeader">Search EB-eye</td>
                      <td align="left">
                          <a title="Show gene annotation" target="_blank"
                             href="http://www.ebi.ac.uk/ebisearch/search.ebi?db=genomes&t=${atlasGene.geneIdentifier}">
                              ${atlasGene.geneIdentifier}
                          </a>
                      </td>
  
                      <!-- td width="8%">&nbsp;</td-->
  
                  </tr>
  
                  <tr>
                      <td colspan="2" style="padding-top:5px">
                          <a href="#"
                             onclick="javascript:$(this).parents('table:first').find('.expandable').show();$(this).remove();return false;"><img
                                  src="${pageContext.request.contextPath}/images/expp.gif" alt="" border="none"> Show more
                              properties</a>
                      </td>
                  </tr>
              </table>
          </td>
          <td style="padding-top:15px;">
              <c:if test="${atlasGene.hasAnatomogram}">
                  <!--
                  <img src="${pageContext.request.contextPath}/anatomogram/${atlasGene.geneIdentifier}.png" alt="anatomogram" border="1px" />
                  -->
              </c:if>
          </td>
      </tr>
  </table>
  
  <table cellspacing="0" cellpadding="0" style="margin-top:40px">
  
  
  <tr>
  <td>
  <table cellspacing="0" cellpadding="0" border="0">
  <tr>
  <td valign="top" width="50%">
  <table>
  <tr>
      <td class="sectionHeader" style="padding-right:20px;">
  
  
          <c:choose>
              <c:when test="${ef!=null}">
                  ${f:escapeXml(atlasProperties.curatedEfs[ef])}
                  <div style="font-size:10px; font-weight:normal;"><a
                          href="${pageContext.request.contextPath}/gene/${atlasGene.geneIdentifier}">&lt;&lt;view all
                      experimental factors</a></div>
              </c:when>
              <c:otherwise>
                  Experimental Factors
              </c:otherwise>
          </c:choose>
  
      </td>
  </tr>
  
  <tr>
  <td style="padding-top: 3px; width:60%;">
  
  <table cellpadding="0" style="width:100%;" border="0">
      <tr>
  
          <c:forEach var="experimentalFactor" items="${differentiallyExpressedFactors}" varStatus="i" end="5">
          <c:if test="${(i.index mod 2)==0}">
      </tr>
      <tr>
          </c:if>
  
          <td style="vertical-align:top; padding-right:20px;">
              <c:if test="${ef==null}">
                  <div class="geneAnnotHeader"
                       style="width:200px;">${f:escapeXml(atlasProperties.curatedEfs[experimentalFactor.name])}</div>
              </c:if>
              studied in
              <c:forEach var="experiment" items="${experimentalFactor.experiments}" varStatus="i_e">
                  <c:if test="${(i_e.index<5)||(ef!=null)}">
                      <a href="${pageContext.request.contextPath}/experiment/${experiment}/${atlasGene.geneIdentifier}"
                         title="${experiment}">${experiment}</a><c:if test="${!i_e.last}">, </c:if>
                  </c:if>
                  <c:if test="${i_e.last}">
                      <c:if test="${(i_e.count>=5)&&(ef==null)}">
                          ... (${i_e.count} experiments)
                      </c:if>
                  </c:if>
              </c:forEach>
  
              <c:if test='${experimentalFactor.name=="organismpart" && atlasGene.hasAnatomogram}'>
                  <br/>
  
                  <div style="overflow:hidden; <c:if test="${ef==null}">width:300px;</c:if>">
                      <img src="${pageContext.request.contextPath}/<c:if test="${ef==null}">web</c:if>anatomogram/${atlasGene.geneIdentifier}.png"
                           alt="anatomogram" border="none" usemap="#anatomogram"/>
                  </div>
                  <!--
                  <map name="anatomogram">
                  <c:forEach var="anatomogramArea" items="${anatomogramMap}">
                      <area shape="rect"
                      coords="${anatomogramArea.x0},${anatomogramArea.y0},${anatomogramArea.x1},${anatomogramArea.y1}"
                      alt="${anatomogramArea.efo}"
                      href="/${anatomogramArea.efo}.html"
                      onclick="FilterExpsEfo(this,'${u:escapeJS(anatomogramArea.efo)}'); return false;">
  
                  </c:forEach>
                  </map>
                  -->
  
                  <!--
                  <c:forEach var="anatomogramArea" items="${anatomogramMap}">
                      "${anatomogramArea.efo}"
                  </c:forEach>
                  -->
  
                  <c:if test="${ef==null}">
                      <div style="padding-left:0px; font-size:10px;">
                          <a href="${pageContext.request.contextPath}/gene/${atlasGene.geneIdentifier}?ef=${experimentalFactor.name}">show
                              this factor only&gt;&gt;</a>
                      </div>
                  </c:if>
  
              </c:if>
              <c:if test='${experimentalFactor.name!="organismpart" || !atlasGene.hasAnatomogram || ef!=null}'>
                  <!--generic ef - the above clause imposes the following rules:
                  1. in multi-experimental factor experiment view:
                  a. ef != 'organismpart' => always show a table
                  b. ef == 'organismpart'
                  - anatomogram exists => show anatomogram
                  - anatomogram doesn't exist => show table
                  2. in single-experimental factor experiment view: (ef != null):
                  a. as 1a
                  b ef == 'organismpart' => show anatomogram (if exists) AND the table
                  -->
  
                  <table class="heatmap" cellpadding="0" cellspacing="0" border="0"
                         style="margin-top:5px; margin-left:0px; width:100%;">
                      <thead>
                      <tr style="height:26px;border-top:1px solid #CDCDCD">
                          <th style="border: 1px solid #CDCDCD;padding: 1px 5px 1px 4px; width:180px;">Factor Value</th>
                          <th style="border-top:1px solid #CDCDCD;border-bottom:1px solid #CDCDCD;border-right:1px solid #CDCDCD;padding: 1px 2px 1px 4px; width:20px;">
                              <span style="font-size:8px">U/D</span></th>
                          <th style="border-top:1px solid #CDCDCD;border-bottom:1px solid #CDCDCD;border-right:1px solid #CDCDCD;padding: 1px 2px 1px 4px;">
                              Experiments
                          </th>
                      </tr>
                      </thead>
                      <tbody>
                      <c:set var="values" value="${experimentalFactor.topValues}"/>
                      <c:if test="${ef!=null}">
                          <c:set var="values" value="${experimentalFactor.values}"/>
                      </c:if>
                      <c:forEach var="e" items="${values}" varStatus="i">
                          <tr class="heatmap_row"
                              onclick="FilterExps(this,'${u:escapeJS(e.efv)}','${u:escapeJS(e.ef)}'); return false;"
                              title="${atlasGene.geneName}">
                              <td style="padding: 1px 5px 1px 4px;border-bottom:1px solid #CDCDCD; min-width: 100px;border-left:1px solid #CDCDCD;">
                                                                      <span style="font-weight: bold">
                                                                              ${u:truncate(u:upcaseFirst(e.efv), 30)}
                                                                      </span>
                              </td>
  
                              <c:set var="ud" value="${e.payload}"/>
                              <c:choose>
                                  <c:when test="${empty ud || ud.ups + ud.downs + ud.nones == 0}">
                                      <td class="counter"><c:choose><c:when test="${j.first}">
                                          <div class="osq"></div>
                                      </c:when></c:choose></td>
                                  </c:when>
                                  <c:when test="${ud.ups == 0 && ud.downs == 0 && ud.nones > 0}">
                                      <td class="acounter" style="color:black;"
                                          title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) is non-differentially in ${ud.nones} experiment(s)."
                                              >
                                          <div class="osq">${ud.nones}</div>
                                      </td>
                                  </c:when>
                                  <c:when test="${ud.ups > 0 && ud.downs == 0 && ud.nones == 0}">
                                      <td class="acounter upback"
                                          title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) is overexpressed in ${ud.ups} experiment(s)."
                                              >
                                          <div class="osq">${ud.ups}</div>
                                      </td>
                                  </c:when>
                                  <c:when test="${ud.ups == 0 && ud.downs > 0 && ud.nones == 0}">
                                      <td class="acounter downback"
                                          title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) is underexpressed in ${ud.downs} experiment(s)."
                                              >
                                          <div class="osq">${ud.downs}</div>
                                      </td>
                                  </c:when>
                                  <c:when test="${ud.ups > 0 && ud.downs == 0 && ud.nones > 0}">
                                      <td class="acounter"
                                          title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) overexpressed in ${ud.ups} and not differentially expressed in ${ud.nones} experiment(s)."
                                              >
                                          <div class="sq">
                                              <div class="nuduo"></div>
                                              <div class="nunoval">${ud.nones}</div>
                                              <div class="nuupval">${ud.ups}</div>
                                          </div>
                                      </td>
                                  </c:when>
                                  <c:when test="${ud.ups == 0 && ud.downs > 0 && ud.nones > 0}">
                                      <td class="acounter"
                                          title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) underexpressed in ${ud.downs} and not differentially expressed in ${ud.nones} experiment(s)."
                                          onclick="atlas.hmc(${i.index},${j.index},event || window.event)">
                                          <div class="sq">
                                              <div class="ndduo"></div>
                                              <div class="ndnoval">${ud.nones}</div>
                                              <div class="nddnval">${ud.downs}</div>
                                          </div>
                                      </td>
                                  </c:when>
                                  <c:when test="${ud.ups > 0 && ud.downs > 0 && ud.nones == 0}">
                                      <td class="acounter"
                                          title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) overexpressed in ${ud.ups} and underexpressed in ${ud.downs} experiment(s)."
                                              >
                                          <div class="sq">
                                              <div class="udduo"></div>
                                              <div class="uddnval">${ud.downs}</div>
                                              <div class="udupval">${ud.ups}</div>
                                          </div>
                                      </td>
                                  </c:when>
                                  <c:otherwise>
                                      <td class="acounter"
                                          title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) overexpressed in ${ud.ups} and underexpressed in ${ud.downs} experiment(s)."
                                              >
                                          <div class="sq">
                                              <div class="tri"></div>
                                              <div class="tdnval">${ud.downs}</div>
                                              <div class="tupval">${ud.ups}</div>
                                              <div class="tnoval">${ud.nones}</div>
                                          </div>
                                      </td>
                                  </c:otherwise>
                              </c:choose>
  
                              <td style="border:1px solid #CDCDCD; padding-left:5px;">
                                                              <span style="font-size:smaller">
                                                              <c:forEach var="experimentID" items="${ud.experiments}"
                                                                         varStatus="i_e">
                                                                  <c:if test="${(i_e.index<5)}">
                                                                      <a href="${pageContext.request.contextPath}/experiment/${experimentalFactor.experimentAccessions[experimentID]}/${atlasGene.geneIdentifier}"
                                                                         onclick="window.location=this.href;"
                                                                         title="${experimentalFactor.experimentAccessions[experimentID]}">${experimentalFactor.experimentAccessions[experimentID]}</a><c:if
                                                                          test="${!i_e.last}">, </c:if>
                                                                  </c:if>
                                                                  <c:if test="${i_e.last}">
                                                                      <c:if test="${(i_e.count>=5)}">
                                                                          ... (${i_e.count} experiments)
                                                                      </c:if>
                                                                  </c:if>
                                                              </c:forEach>
                                                              </span>
                              </td>
  
                          </tr>
                      </c:forEach>
                      </tbody>
                  </table>
  
  
                  <div style="padding-left:0px">
                      <c:if test="${(experimentalFactor.moreValuesCount>0)&&(ef==null)}">
                          ${experimentalFactor.moreValuesCount} more value(s).
                      </c:if>
                      <c:if test="${ef==null}">
                          <div style="font-size:10px;">
                              <a href="${pageContext.request.contextPath}/gene/${atlasGene.geneIdentifier}?ef=${experimentalFactor.name}">show
                                  this factor only&gt;&gt;</a>
                          </div>
                      </c:if>
                  </div>
                  <!--generic ef -->
              </c:if>
  
              <br/><br/>
  
          </td>
          </c:forEach>
  
          <c:forEach var="k" begin="${4 - i.index mod 2}" end="2">
              <td>
  
              </td>
          </c:forEach>
  
  
      </tr>
  </table>
  
  <c:forEach var="experimentalFactor" items="${differentiallyExpressedFactors}" varStatus="i" begin="6">
      <c:if test="${ef==null}">
          <div class="geneAnnotHeader">${f:escapeXml(atlasProperties.curatedEfs[experimentalFactor.name])}</div>
      </c:if>
      studied in
      <c:forEach var="experiment" items="${experimentalFactor.experiments}" varStatus="i_e">
          <c:if test="${(i_e.index<5)||(ef!=null)}">
              <a href="${pageContext.request.contextPath}/experiment/${experiment}/${atlasGene.geneIdentifier}">${experiment}</a><c:if
                  test="${!i_e.last}">, </c:if>
          </c:if>
          <c:if test="${i_e.last}">
              <c:if test="${(i_e.count>=5)&&(ef==null)}">
                  ... (${i_e.count} experiments)
              </c:if>
          </c:if>
      </c:forEach>
      <c:if test="${ef==null}">
          <div style="font-size:10px;">
              <a href="${pageContext.request.contextPath}/gene/${atlasGene.geneIdentifier}?ef=${experimentalFactor.name}">show
                  this factor only&gt;&gt;</a>
          </div>
      </c:if>
      <br/><br/>
  </c:forEach>
  </td>
  </tr>
  </table>
  
  </td>
  <td valign="top" align="left" width="50%">
      <table align="left">
          <tr>
              <td id="expHeader_td" class="sectionHeader" style="vertical-align: top">Expression Profiles</td>
              <td align="right">
                  <div id="Pagination" class="pagination_ie" style="padding-bottom: 3px; padding-top: 3px; "></div>
                  <div id="Pagination1" class="pagination_ie" style="padding-bottom: 3px; padding-top: 3px; ">
                  </div>
              </td>
          </tr>
  
          <tr>
              <td align="left" valign="top" style="border-bottom:1px solid #CDCDCD;padding-bottom:5px">
                  <div id="pagingSummary" class="header"></div>
              </td>
              <td align="right" style="border-bottom:1px solid #CDCDCD;padding-bottom:5px">
                  <div id="expSelect"></div>
              </td>
  
          </tr>
          <tr>
              <td colspan="2">
                  <div id="ExperimentResult">
                      <c:import url="/geneExpList">
                          <c:param name="gid" value="${atlasGene.geneId}"/>
                          <c:param name="from" value="1"/>
                          <c:param name="to" value="5"/>
                      </c:import>
                  </div>
              </td>
          </tr>
      </table>
  
  </td>
  </tr>
  </table>
  <!--
  <div class="sectionHeader">Old School Vertical Heatmap</div>
  <table class="heatmap" cellpadding="0" cellspacing="0" border="0" id ="heatmap_tbl">
                             <thead>
                                 <tr style="height:26px;border-top:1px solid #CDCDCD">
                                     <th style="border: 1px solid #CDCDCD;padding: 1px 5px 1px 4px;">Factor Value</th>
                                     <th style="border-top:1px solid #CDCDCD;border-bottom:1px solid #CDCDCD;border-right:1px solid #CDCDCD;padding-left:4px;padding-top:1px;padding-bottom:1px">Factor</th>
                                     <th style="border-top:1px solid #CDCDCD;border-bottom:1px solid #CDCDCD;border-right:1px solid #CDCDCD;padding: 1px 2px 1px 4px;">E.</th>
                                 </tr>
                                 <tr>
                                     <td valign="top" height="30" align="center" colspan="3" style="border-bottom:1px solid #CDCDCD;background-color:white;border-left:1px solid #CDCDCD;border-right:1px solid #CDCDCD">
                                         Legend: <img style="position:relative;top:6px" src="${pageContext.request.contextPath}/images/legend-sq.png" height="20"/> - number of studies the gene is <span style="color:red;font-weight:bold">up</span>/<span style="color:blue;font-weight:bold">down</span> in
                                     </td>
                                 </tr>
                             </thead>
                             <tbody>
                                 <c:forEach var="e" items="${heatMapRows}" varStatus="i">
                                     <tr class="heatmap_row"
  
                                         onclick="FilterExps(this,'${u:escapeJS(e.efv)}','${u:escapeJS(e.ef)}')"
                                         title="${atlasGene.geneName}">
                                         <td nowrap="true" style="padding: 1px 5px 1px 4px;border-bottom:1px solid #CDCDCD; min-width: 100px;border-left:1px solid #CDCDCD;">
                                             <span style="font-weight: bold">
                                                     ${u:truncate(u:upcaseFirst(e.efv), 30)}
                                             </span>
                                         </td>
  
                                         <td nowrap="true" style="padding: 1px 5px 1px 4px;border-bottom:1px solid #CDCDCD;min-width: 80px;">
                                             ${f:escapeXml(atlasProperties.curatedEfs[e.ef])}
                                         </td>
  
                                         <c:set var="ud" value="${e.payload}"/>
                                         <c:choose>
                                             <c:when test="${empty ud || ud.ups + ud.downs + ud.nones == 0}">
                                                 <td class="counter"><c:choose><c:when test="${j.first}"><div class="osq"></div></c:when></c:choose></td>
                                             </c:when>
                                             <c:when test="${ud.ups == 0 && ud.downs == 0 && ud.nones > 0}">
                                                 <td class="acounter" style="color:black;"
                                                     title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) is non-differentially in ${ud.nones} experiment(s)."
                                                     ><div class="osq">${ud.nones}</div></td>
                                             </c:when>
                                             <c:when test="${ud.ups > 0 && ud.downs == 0 && ud.nones == 0}">
                                                 <td class="acounter upback"
                                                     title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) is overexpressed in ${ud.ups} experiment(s)."
                                                     ><div class="osq">${ud.ups}</div></td>
                                             </c:when>
                                             <c:when test="${ud.ups == 0 && ud.downs > 0 && ud.nones == 0}">
                                                 <td class="acounter downback"
                                                     title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) is underexpressed in ${ud.downs} experiment(s)."
                                                     ><div class="osq">${ud.downs}</div></td>
                                             </c:when>
                                             <c:when test="${ud.ups > 0 && ud.downs == 0 && ud.nones > 0}">
                                                 <td class="acounter"
                                                     title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) overexpressed in ${ud.ups} and not differentially expressed in ${ud.nones} experiment(s)."
                                                     ><div class="sq"><div class="nuduo"></div><div class="nunoval">${ud.nones}</div><div class="nuupval">${ud.ups}</div></div></td>
                                             </c:when>
                                             <c:when test="${ud.ups == 0 && ud.downs > 0 && ud.nones > 0}">
                                                 <td class="acounter"
                                                     title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) underexpressed in ${ud.downs} and not differentially expressed in ${ud.nones} experiment(s)."
                                                     onclick="atlas.hmc(${i.index},${j.index},event || window.event)"><div class="sq"><div class="ndduo"></div><div class="ndnoval">${ud.nones}</div><div class="nddnval">${ud.downs}</div></div></td>
                                             </c:when>
                                             <c:when test="${ud.ups > 0 && ud.downs > 0 && ud.nones == 0}">
                                                 <td class="acounter"
                                                     title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) overexpressed in ${ud.ups} and underexpressed in ${ud.downs} experiment(s)."
                                                     ><div class="sq"><div class="udduo"></div><div class="uddnval">${ud.downs}</div><div class="udupval">${ud.ups}</div></div></td>
                                             </c:when>
                                             <c:otherwise>
                                                 <td class="acounter"
                                                     title="in ${f:escapeXml(e.efv)} (${f:escapeXml(e.ef)}) overexpressed in ${ud.ups} and underexpressed in ${ud.downs} experiment(s)."
                                                     ><div class="sq"><div class="tri"></div><div class="tdnval">${ud.downs}</div><div class="tupval">${ud.ups}</div><div class="tnoval">${ud.nones}</div></div></td>
                                             </c:otherwise>
                                         </c:choose>
                                     </tr>
                                 </c:forEach>
                             </tbody>
                         </table>
  -->
  
  </td>
  </tr>
  
  </table>
  
  
  <c:set var="timeFinish" value="${u:currentTime()}"/>
  <div align="center">Processing time: <c:out value="${(timeFinish - timeStart) / 1000.0}"/> secs.</div>
  
  </div>
  <!-- /id="ae_pagecontainer" -->
  </div>
  <!-- /id="contents" -->
  
  <u:htmlTemplate file="look/footer.html"/>
  </body></html>
  