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  -
  -                          Release Notes
  +                         Release Notes
       
                                caMOD
  -                          Version 2.1
  -                         May 30th, 2006
  +                          Version 2.2
  +                         November 30th, 2006
   
          National Cancer Institute Center for Bioinformatics
   
  
positive.code: ================================================================
      2.0 Release History
  ================================================================
  
      caMOD Version 2.1
      --	May 30th 2006    
      
  
negative.code:     3.0 New Features and Updates
  ================================================================
  
  Improved Search functions
  - Search for models with images (TestTrack entry #379)
  - Search for tool strains (TestTrack entry #395)
  - Search for data from external sources (TestTrack entry #380)
  
  
  Improved Search Results list
  - The listing of models in the search results list contains icons which indicate the source of the data e.g. from the Mouse Tumor Biology database (TestTrack entry #458) or the availability of associated microarray and/or image data for a particular record. (TestTrack entry #396)
  
  
  Nomenclature names and Genotype information
  - Users can now add information about the genotype of the model as well as the official strain designation (TestTrack entry #356)
  
  
  siRNA experiments 
  - caMOD supports the submission and retrieval of siRNA experiments (TestTrack entry #385)
  
  
  Online Help
  - A new version of online help including a downloadable user guide (PDF file) has been integrated. Help icons and tool tips have been modified to promote intra and inter-application consistency. (TestTrack entries #229, 413, 452) The documentation itself has been updated (TestTrack entries #286)
  Integration of the new online help (a few typo fixes) and the new user documentation. (TestTrack entry #413)
  
  
  Superuser Admin functions
  - The privileges of a super user were expanded from being able to access and modify all models to being able to access, modify, change state, and inactivate all model entries. (TestTrack entry #389, 449, 450)
  
  
  Integration of MTB data
  - The complete Mouse Tumor Biology Data set (http://tumor.informatics.jax.org) has been inserted in caMOD. We would like to thank our colleguages at the Jackson Laboratory in Bar Harbor, Maine for their support with this effort.
  In order to prepare caMOD for the MTB data the following changes had to be made:
  	- Add external_source and external_source_identifier to AnimalModel object. (TestTrack entry #391)
  	- mark histopathology records with 0% tumor incidence rate.(TestTrack entry #448)
  	- Modify Organ object to display data for organ allows for conceptCodes = '00000'.(TestTrack entry #451)
  	- Modify viewCarcinogenicInterventions to display data from MTB (JAX(TestTrack entry #453) 
  	- Add ageOfDetection (and unit) to submission screen (also searchable). (TestTrack entry #455)
  
  
  Externalize properties
  - Configure the production hibernate.cfg.xml file to not print SQL to the log (TestTrack entry #408)
  - Work with the systems group to come up with a scheme for externalizing properties (TestTrack entry #410)
  - Modify the properties files to point to the appropriate tiers for all external applications (TestTrack entry #411)
  
  
  Improvements to EVS vocabulary tree
  The performance of the EVS vocabulary trees for the retrieval of controlled vocabularies for anatomy and disease was improved by adding a caching mechanism (TestTrack entries #400 and 438)
  
  
  Data issues
  - NIH intramural researchers used caMOD to store information about models available on the NIH campus. These entries were submitted to earlier versions of caMOD. They had to be completed in order to comply with the current standards of model submission to caMOD (TestTrack entry #366)
  - Earlier versions of caMOD did not include a field for submission of the MGI (Mouse Genome Informatics) identifier for modified alleles. The MGI numbers have been added for the existing allele records (TestTrack entry #418)
    
  
  The caMOD 2.1 Common Data Elements (CDEs) are available via caDSR 
  (cancer Data Standard Repository) http://ncicb.nci.nih.gov/core/caDSR
    
    
    
  ================================================================
      4.0 Defects Fixed Since Last Release
  ================================================================
  	
  Defect #37:  Search for anatomy synonyms returns diseases and drugs
  Defect #276: EVS tree - use display name instead of concept name
  Defect #283: EVS tree - the search function is not working which also prevents users from accessing the field to manually enter diagnoses
  Defect #295: Verify all free text fields allow html markup (#420, #422, #423, #429, #430, #431, #434, #439, #442, #443).
  Defect #373: Transcriptional (Promoter): should be Transcriptional
  Defect #374: Rearrange the order of items in the administrative route dropdown list
  Defect #406: Clean up email code for assigning a model to a screener and an editor
  Defect #412: Modify EVSTree so that it points to the appropriate tiers for the caBIO api
  Defect #426: Remove duplicated entries on search pages with highlight tag
  Defect #440: Link to Jackson lab in availability search page needs to be updated.
  Defect #441: entry of incidence rate on histopathology page cannot be deleted.
  Defect #447: Clean up legal rules of the road page.
  Defect #454: Can not duplicate models with TransientInterferenceMethod data.
  Defect #461: App support does not receive emails with requests for new user accounts.
  Defect #462: customizing search results doesn't work when carcinogen is selected.
  
  
  
  ================================================================
  