anchor.diff:  
   %% VQSR INDEL %% ===============================================================
   
  -recalibrate_indel recalibrate_indel_idx tranches_indel recal_report = gatk-recal-indel(
  +recalibrate_indel recalibrate_indel_idx tranches_indel recal_report_indel = gatk-recal-indel(
     fa:            fa,
     fai:           fai,
     dict:          dict,
  
positive.code: %% Query
  %% =============================================================================
  
  recalibrated_variants_vcf qc;
  
  
negative.code: 
  %% VQSR SNP %% =================================================================
  
  recalibrate_snp recalibrate_snp_idx tranches_snp tranches_report recal_report_snp = gatk-recal-snp(
    fa:             fa,
    fai:            fai,
    dict:           dict,
  