anchor.diff:  	MergedTargetResults=mergeResults(idxml_results:TargetResults);
   	MergedDecoyResults=mergeResults(idxml_results:DecoyResults);
   
  -	ConsensusTargetResults=runConsensus(idxml_results:MergedTargetResults numthreads);
  -	ConsensusDecoyResults=runConsensus(idxml_results:MergedDecoyResults numthreads);
  +	ConsensusTargetResults=runConsensus(idxml_results:MergedTargetResults numthreads:numthreads);
  +	ConsensusDecoyResults=runConsensus(idxml_results:MergedDecoyResults numthreads:numthreads);
   
   	FDRResults=establishFDR(target_idxml:ConsensusTargetResults decoy_idxml:ConsensusDecoyResults);
   
  
positive.code: # Create consensus using OpenMS ConsensusID
  deftask runConsensus(Consensus(File):idxml_results(File) numthreads) in bash *{
  	mv $idxml_results res.idXML
  	ConsensusID -in res.idXML -out cons.idXML -threads $numthreads
  	Consensus=cons.idXML
  }*
  
  
negative.code: # Input data and settings
  spectra_tar="spectra.tar";
  db_fasta="humanprots.fasta";
  blast_index_name="humanprots";
  omssa_mods="mods.xml";
  omssa_usermods="usermods.xml";
  numthreads="4";
  