anchor.diff:  # Input data and settings
   spectra_tar="spectra.tar";
  -db_fasta="barleyprots.fa";
  -blast_index_name="barleyprots";
  +db_fasta="humanprots.fasta";
  +blast_index_name="humanprots";
   omssa_mods="mods.xml";
   omssa_usermods="usermods.xml";
   numthreads="4";
  
positive.code: 	MergedTargetResults=mergeResults(idxml_results:TargetResults);
  	MergedDecoyResults=mergeResults(idxml_results:DecoyResults);
  
  	ConsensusTargetResults=runConsensus(idxml_results:MergedTargetResults numthreads);
  	ConsensusDecoyResults=runConsensus(idxml_results:MergedDecoyResults numthreads);
  
  	FDRResults=establishFDR(target_idxml:ConsensusTargetResults decoy_idxml:ConsensusDecoyResults);
  
  
negative.code: # Create consensus using OpenMS ConsensusID
  deftask runConsensus(Consensus(File):idxml_results(File) numthreads) in bash *{
  	mv $idxml_results res.idXML
  	ConsensusID -in res.idXML -out cons.idXML -algorithm ranks -threads $numthreads
  	Consensus=cons.idXML
  }*
  
  