<gh_stars>10-100
"""
Long transient MCMC search
==========================

MCMC search for a long transient CW signal.
"""
import pyfstat
import os
import numpy as np
import PyFstat_example_make_data_for_long_transient_search as data
from pyfstat.helper_functions import get_predict_fstat_parameters_from_dict

if not os.path.isdir(data.outdir) or not np.any(
    [f.endswith(".sft") for f in os.listdir(data.outdir)]
):
    raise RuntimeError(
        "Please first run PyFstat_example_make_data_for_long_transient_search.py !"
    )

tstart = data.tstart
duration = data.duration

inj = {
    "tref": data.tstart,
    "F0": data.F0,
    "F1": data.F1,
    "F2": data.F2,
    "Alpha": data.Alpha,
    "Delta": data.Delta,
    "transient_tstart": data.transient_tstart,
    "transient_duration": data.transient_duration,
}

DeltaF0 = 6e-7
DeltaF1 = 1e-13

# to make the search cheaper, we exactly target the transientStartTime
# to the injected value and only search over TransientTau
theta_prior = {
    "F0": {
        "type": "unif",
        "lower": inj["F0"] - DeltaF0 / 2.0,
        "upper": inj["F0"] + DeltaF0 / 2.0,
    },
    "F1": {
        "type": "unif",
        "lower": inj["F1"] - DeltaF1 / 2.0,
        "upper": inj["F1"] + DeltaF1 / 2.0,
    },
    "F2": inj["F2"],
    "Alpha": inj["Alpha"],
    "Delta": inj["Delta"],
    "transient_tstart": tstart + 0.25 * duration,
    "transient_duration": {
        "type": "halfnorm",
        "loc": 0.001 * duration,
        "scale": 0.5 * duration,
    },
}

ntemps = 2
log10beta_min = -1
nwalkers = 100
nsteps = [100, 100]

transientWindowType = "rect"

mcmc = pyfstat.MCMCTransientSearch(
    label="transient_search",
    outdir=data.outdir,
    sftfilepattern=os.path.join(data.outdir, "*simulated_transient_signal*sft"),
    theta_prior=theta_prior,
    tref=inj["tref"],
    nsteps=nsteps,
    nwalkers=nwalkers,
    ntemps=ntemps,
    log10beta_min=log10beta_min,
    transientWindowType=transientWindowType,
)
mcmc.run(walker_plot_args={"plot_det_stat": True, "injection_parameters": inj})
mcmc.print_summary()
mcmc.plot_corner(add_prior=True, truths=inj)
mcmc.plot_prior_posterior(injection_parameters=inj)

# plot cumulative 2F, first building a dict as required for PredictFStat
d, maxtwoF = mcmc.get_max_twoF()
for key, val in mcmc.theta_prior.items():
    if key not in d:
        d[key] = val
d["h0"] = data.h0
d["cosi"] = data.cosi
d["psi"] = data.psi
PFS_input = get_predict_fstat_parameters_from_dict(
    d, transientWindowType=transientWindowType
)
mcmc.plot_cumulative_max(PFS_input=PFS_input)
