@Test public void testDump() throws OWLOntologyCreationException, OBOFormatParserException, IOException, ReferentialIntegrityException { load(); GoMySQLDatabaseDumper dumper = new GoMySQLDatabaseDumper(g); dumper.setGafdocs(gafdocs); dumper.setTargetDirectory("target/godb"); dumper.dump(); dumper.reportProblems(); }
public void dump() throws IOException, ReferentialIntegrityException { dumpGraphModule(); dumpMetaModule(); dumpAssociationModule(); dumpOptModule(); dumpDbxrefTable(); showStats(); cleanup(); }
GoMySQLDatabaseDumper extends DatabaseDumper { public void dump() throws IOException, ReferentialIntegrityException { dumpGraphModule(); dumpMetaModule(); dumpAssociationModule(); dumpOptModule(); dumpDbxrefTable(); showStats(); cleanup(); } }
GoMySQLDatabaseDumper extends DatabaseDumper { public void dump() throws IOException, ReferentialIntegrityException { dumpGraphModule(); dumpMetaModule(); dumpAssociationModule(); dumpOptModule(); dumpDbxrefTable(); showStats(); cleanup(); } GoMySQLDatabaseDumper(OWLGraphWrapper g); }
GoMySQLDatabaseDumper extends DatabaseDumper { public void dump() throws IOException, ReferentialIntegrityException { dumpGraphModule(); dumpMetaModule(); dumpAssociationModule(); dumpOptModule(); dumpDbxrefTable(); showStats(); cleanup(); } GoMySQLDatabaseDumper(OWLGraphWrapper g); void dump(); void dumpGraphModule(); void dumpTermTable(); void dumpTermSubsetTable(); void dumpTerm2TermTable(); void dumpMetaModule(); void dumpDbxrefTable(); void dumpOptModule(); void dumpGraphPathTable(); void dumpAssociationModule(); void dumpSpeciesTable(); void dumpSpeciesRow(PrintStream s, String taxId); void dumpAssociationTable(); void dumpAssociationRowsForGaf(PrintStream s, GafDocument gafdoc); void dumpGeneProductRowsForGaf(PrintStream s, GafDocument gafdoc); }
GoMySQLDatabaseDumper extends DatabaseDumper { public void dump() throws IOException, ReferentialIntegrityException { dumpGraphModule(); dumpMetaModule(); dumpAssociationModule(); dumpOptModule(); dumpDbxrefTable(); showStats(); cleanup(); } GoMySQLDatabaseDumper(OWLGraphWrapper g); void dump(); void dumpGraphModule(); void dumpTermTable(); void dumpTermSubsetTable(); void dumpTerm2TermTable(); void dumpMetaModule(); void dumpDbxrefTable(); void dumpOptModule(); void dumpGraphPathTable(); void dumpAssociationModule(); void dumpSpeciesTable(); void dumpSpeciesRow(PrintStream s, String taxId); void dumpAssociationTable(); void dumpAssociationRowsForGaf(PrintStream s, GafDocument gafdoc); void dumpGeneProductRowsForGaf(PrintStream s, GafDocument gafdoc);  }