@Test public void hydrogenHandling11() throws StructureBuildingException { Fragment fragment = sBuilder.build("[SH5+]"); List<Atom> atomList = fragment.getAtomList(); assertEquals(1, atomList.size()); int lambdaConvent =atomList.get(0).getLambdaConventionValency(); assertEquals(4, lambdaConvent); assertEquals(1, atomList.get(0).getCharge()); assertEquals(1, atomList.get(0).getProtonsExplicitlyAddedOrRemoved()); assertEquals(5, atomList.get(0).determineValency(true)); }
Fragment build(String smiles) throws StructureBuildingException { return build(smiles, "", NONE_LABELS_VAL); }
SMILESFragmentBuilder { Fragment build(String smiles) throws StructureBuildingException { return build(smiles, "", NONE_LABELS_VAL); } }
SMILESFragmentBuilder { Fragment build(String smiles) throws StructureBuildingException { return build(smiles, "", NONE_LABELS_VAL); } SMILESFragmentBuilder(IDManager idManager); }
SMILESFragmentBuilder { Fragment build(String smiles) throws StructureBuildingException { return build(smiles, "", NONE_LABELS_VAL); } SMILESFragmentBuilder(IDManager idManager);  }
SMILESFragmentBuilder { Fragment build(String smiles) throws StructureBuildingException { return build(smiles, "", NONE_LABELS_VAL); } SMILESFragmentBuilder(IDManager idManager);   }