@Test public void getMatchCountsIsTrue() { final List<MatchCount> matchCounts = this.termsGenePanelWithCounts.getMatchCounts(); final MatchCount firstMatchCount = matchCounts.get(0); assertEquals(2, firstMatchCount.getCount()); assertEquals(HPO_TERM1, firstMatchCount.getId()); assertEquals(HPO_TERM1, firstMatchCount.getName()); final MatchCount secondMatchCount = matchCounts.get(1); assertEquals(2, secondMatchCount.getCount()); assertEquals(HPO_TERM2, secondMatchCount.getId()); assertEquals(HPO_TERM2, secondMatchCount.getName()); }
@Override public List<MatchCount> getMatchCounts() { return this.matchCounts; }
DefaultGenePanelImpl implements GenePanel { @Override public List<MatchCount> getMatchCounts() { return this.matchCounts; } }
DefaultGenePanelImpl implements GenePanel { @Override public List<MatchCount> getMatchCounts() { return this.matchCounts; } DefaultGenePanelImpl(@Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms, @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(@Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms, final boolean generateMatchCount,
        @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(
        @Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms,
        @Nonnull final Collection<VocabularyTerm> rejectedGenes,
        @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(
        @Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms,
        @Nonnull final Collection<VocabularyTerm> rejectedGenes,
        final boolean generateMatchCount,
        @Nonnull final VocabularyManager vocabularyManager); }
DefaultGenePanelImpl implements GenePanel { @Override public List<MatchCount> getMatchCounts() { return this.matchCounts; } DefaultGenePanelImpl(@Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms, @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(@Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms, final boolean generateMatchCount,
        @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(
        @Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms,
        @Nonnull final Collection<VocabularyTerm> rejectedGenes,
        @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(
        @Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms,
        @Nonnull final Collection<VocabularyTerm> rejectedGenes,
        final boolean generateMatchCount,
        @Nonnull final VocabularyManager vocabularyManager); @Override Set<VocabularyTerm> getPresentTerms(); @Override Set<VocabularyTerm> getAbsentTerms(); @Override List<TermsForGene> getTermsForGeneList(); @Override List<MatchCount> getMatchCounts(); @Override JSONObject toJSON(); @Override JSONObject toJSON(final int fromIndex, final int toIndex); @Override int size(); }
DefaultGenePanelImpl implements GenePanel { @Override public List<MatchCount> getMatchCounts() { return this.matchCounts; } DefaultGenePanelImpl(@Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms, @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(@Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms, final boolean generateMatchCount,
        @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(
        @Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms,
        @Nonnull final Collection<VocabularyTerm> rejectedGenes,
        @Nonnull final VocabularyManager vocabularyManager);   DefaultGenePanelImpl(
        @Nonnull final Collection<VocabularyTerm> presentTerms,
        @Nonnull final Collection<VocabularyTerm> absentTerms,
        @Nonnull final Collection<VocabularyTerm> rejectedGenes,
        final boolean generateMatchCount,
        @Nonnull final VocabularyManager vocabularyManager); @Override Set<VocabularyTerm> getPresentTerms(); @Override Set<VocabularyTerm> getAbsentTerms(); @Override List<TermsForGene> getTermsForGeneList(); @Override List<MatchCount> getMatchCounts(); @Override JSONObject toJSON(); @Override JSONObject toJSON(final int fromIndex, final int toIndex); @Override int size();  }