huggingface/paper-central-data-2 · Datasets at Hugging Face

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Workshop/WANT	https://openreview.net/forum?id=nErbvDkucY	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Training and inference of large language models using 8-bit floating point	[ "Sergio P. Perez", "Yan Zhang", "James Briggs", "Charlie Blake", "Josh Levy-Kramer", "Paul Balanca", "Carlo Luschi", "Stephen Barlow", "Andrew W Fitzgibbon" ]
Workshop/WANT	https://openreview.net/forum?id=lWU12ye1qa	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	ConcatPlexer : Additional Dim1 Batching for Faster ViTs	[ "Donghoon Han", "Seunghyeon Seo", "Donghyeon Jeon", "Jiho Jang", "Chaerin Kong", "Nojun Kwak" ]
Workshop/WANT	https://openreview.net/forum?id=ipTojoQd1f	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	InstaTune: Instantaneous Neural Architecture Search During Fine-Tuning	[ "Sharath Nittur Sridhar", "Souvik Kundu", "Sairam Sundaresan", "Maciej Szankin", "Anthony Sarah" ]
Workshop/WANT	https://openreview.net/forum?id=iifVZTrqDb	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	ReLoRA: High-Rank Training Through Low-Rank Updates	[ "Vladislav Lialin", "Sherin Muckatira", "Namrata Shivagunde", "Anna Rumshisky" ]
Workshop/WANT	https://openreview.net/forum?id=iP4WcJ4EX0	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Sparse Iso-FLOP Transformations for Maximizing Training Efficiency	[ "Vithursan Thangarasa", "Shreyas Saxena", "Abhay Gupta", "Sean Lie" ]
Workshop/WANT	https://openreview.net/forum?id=fhQIsEbvlN	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Embarrassingly Simple Dataset Distillation	[ "Yunzhen Feng", "Shanmukha Ramakrishna Vedantam", "Julia Kempe" ]
Workshop/WANT	https://openreview.net/forum?id=doQwq4kwFc	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	A Quadratic Synchronization Rule for Distributed Deep Learning	[ "Xinran Gu", "Kaifeng Lyu", "Sanjeev Arora", "Jingzhao Zhang", "Longbo Huang" ]
Workshop/WANT	https://openreview.net/forum?id=ZmuLcqwzkl	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	DAREL: Data Reduction with Losses for Training Acceleration of Real and Hypercomplex Neural Networks	[ "Alexander Vladimirovich Demidovskij", "Aleksei Trutnev", "Artem Tugarev", "Igor Salnikov", "Stanislav Pavlov" ]
Workshop/WANT	https://openreview.net/forum?id=ZezqFPGZKS	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Accelerating Deep Learning using Ivy	[ "Guillermo Sanchez-Brizuela", "Ved Patwardhan", "Matthew Barrett", "Paul Anderson", "Mustafa Hani", "Daniel James Lenton" ]
Workshop/WANT	https://openreview.net/forum?id=NxpWp0IhgB	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	LeanFlex-GKP: Advancing Hassle-Free Structured Pruning with Simple Flexible Group Count	[ "Jiamu Zhang", "Shaochen Zhong", "Andrew Ye", "Zirui Liu", "Kaixiong Zhou", "Xia Hu", "Shuai Xu", "Vipin Chaudhary" ]
Workshop/WANT	https://openreview.net/forum?id=Lh9CKbFV2I	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Batched Low-Rank Adaptation of Foundation Models	[ "Yeming Wen", "Swarat Chaudhuri" ]
Workshop/WANT	https://openreview.net/forum?id=LHKmzWP7RN	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Local LoRA: Memory-Efficient Fine-Tuning of Large Language Models	[ "Oscar Key", "Jean Kaddour", "Pasquale Minervini" ]
Workshop/WANT	https://openreview.net/forum?id=HyyhUIdx20	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Bandit-Driven Batch Selection for Robust Learning under Label Noise	[ "Michal Lisicki", "Graham W. Taylor", "Mihai Nica" ]
Workshop/WANT	https://openreview.net/forum?id=GXl0agrQnI	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Tiny Graph Convolutional Networks with Topologically Consistent Magnitude Pruning	[ "Hichem Sahbi" ]
Workshop/WANT	https://openreview.net/forum?id=93BaEweoRg	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	MatFormer: Nested Transformer for Elastic Inference	[ "Fnu Devvrit", "Sneha Kudugunta", "Aditya Kusupati", "Tim Dettmers", "Kaifeng Chen", "Inderjit S Dhillon", "Yulia Tsvetkov", "Hannaneh Hajishirzi", "Sham M. Kakade", "Ali Farhadi", "Prateek Jain" ]
Workshop/WANT	https://openreview.net/forum?id=4CLNFKi12w	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Task Arithmetic with LoRA for Continual Learning	[ "Rajas Chitale", "Ankit Vaidya", "Aditya Kane", "Archana Santosh Ghotkar" ]
Workshop/WANT	https://openreview.net/forum?id=3GL2GETaaL	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Dynamic Observation Policies in Observation Cost-Sensitive Reinforcement Learning	[ "Colin Bellinger", "Mark Crowley", "Isaac Tamblyn" ]
Workshop/WANT	https://openreview.net/forum?id=2KYHntOYKw	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Cooperative Learning for Cost-Adaptive Inference	[ "Xingli Fang", "Richard M Bradford", "Jung-Eun Kim" ]
Workshop/GenBio	https://openreview.net/forum?id=y14a0nIECr	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Protein Discovery with Discrete Walk-Jump Sampling	[ "Nathan Frey", "Dan Berenberg", "Karina Zadorozhny", "Joseph Kleinhenz", "Julien Lafrance-Vanasse", "Isidro Hotzel", "Yan Wu", "Stephen Ra", "Richard Bonneau", "Kyunghyun Cho", "Vladimir Gligorijevic", "Saeed Saremi" ]
Workshop/GenBio	https://openreview.net/forum?id=vXXEfmYsvS	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	SecretoGen: towards prediction of signal peptides for efficient protein secretion	[ "Felix Teufel", "Carsten Stahlhut", "Jan Refsgaard", "Henrik Nielsen", "Ole Winther", "Dennis Madsen" ]
Workshop/GenBio	https://openreview.net/forum?id=sWCsSKqkXa	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	ProteinRL: Reinforcement learning with generative protein language models for property-directed sequence design	[ "Matt Sternke", "Joel Karpiak" ]
Workshop/GenBio	https://openreview.net/forum?id=qP69kXPdJM	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Protein generation with evolutionary diffusion: sequence is all you need	[ "Sarah Alamdari", "Nitya Thakkar", "Rianne van den Berg", "Alex Lu", "Nicolo Fusi", "Ava Amini", "Kevin Yang" ]
Workshop/GenBio	https://openreview.net/forum?id=mMKxmeBGTb	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	In vitro validated antibody design against multiple therapeutic antigens using generative inverse folding	[ "Amir Shanehsazzadeh" ]
Workshop/GenBio	https://openreview.net/forum?id=m2BtAzGzyZ	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Unexplored regions of the protein sequence-structure map revealed at scale by a library of “foldtuned” language models	[ "Arjuna Subramanian", "Matt Thomson" ]
Workshop/GenBio	https://openreview.net/forum?id=lOIKlYR3vX	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Targeting tissues via dynamic human systems modeling in generative design	[ "Zachary Fox", "Nolan English", "Belinda Akpa" ]
Workshop/GenBio	https://openreview.net/forum?id=jbamDZ374t	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Causal Discovery in Gene Regulatory Networks with GFlowNet: Towards Scalability in Large Systems	[ "Trang Nguyen", "Alexander Tong", "Kanika Madan", "Yoshua Bengio", "Dianbo Liu" ]
Workshop/GenBio	https://openreview.net/forum?id=itp5RDMlNV	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	SE(3) denoising score matching for unsupervised binding energy prediction and nanobody design	[ "Wengong Jin", "Caroline Uhler", "Nir Hacohen" ]
Workshop/GenBio	https://openreview.net/forum?id=ineR4aPK9p	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Analysis of cellular phenotypes with unbiased image-based generative models	[ "Ruben Fonnegra", "Mohammad Sanian", "Zitong Chen", "Lassi Paavolainen", "Juan Caicedo" ]
Workshop/GenBio	https://openreview.net/forum?id=iEGdcrWDV1	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	On Complex Network Dynamics of an In-Vitro Neuronal System during Rest and Gameplay	[ "Moein Khajehnejad", "Forough Habibollahi", "Alon Loeffler", "Brett Kagan", "Adeel Razi" ]
Workshop/GenBio	https://openreview.net/forum?id=htwkLbaFhk	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Contextualized Networks Reveal Heterogeneous Transcriptomic Regulation in Tumors at Sample-Specific Resolution	[ "Caleb Ellington", "Ben Lengerich", "Thomas Watkins", "Jiekun Yang", "Hanxi Xiao", "Manolis Kellis", "Eric Xing" ]
Workshop/GenBio	https://openreview.net/forum?id=hYlfUTyp6p	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	TacoGFN: Target Conditioned GFlowNet for Drug Design	[ "Tony Shen", "Mohit Pandey", "Martin Ester" ]
Workshop/GenBio	https://openreview.net/forum?id=cplCMo4II4	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Microenvironment Flows as Protein Engineers	[ "Chengyue Gong", "Lemeng Wu", "Daniel Diaz", "Xingchao Liu", "James Loy", "Adam Klivans", "qiang liu" ]
Workshop/GenBio	https://openreview.net/forum?id=bxZMKHtlL6	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	AntiFold: Improved antibody structure design using inverse folding	[ "Magnus Høie", "Alissa Hummer", "Tobias Olsen", "Morten Nielsen", "Charlotte Deane" ]
Workshop/GenBio	https://openreview.net/forum?id=bh8dw3guwY	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model	[ "Wei Lu", "Jixian Zhang", "Huang Weifeng", "Ziqiao Zhang", "Chengtao Li", "Shuangjia Zheng" ]
Workshop/GenBio	https://openreview.net/forum?id=bPcgbKDCUQ	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Guiding diffusion models for antibody sequence and structure co-design with developability properties	[ "Amelia Villegas-Morcillo", "Jana Weber", "Marcel Reinders" ]
Workshop/GenBio	https://openreview.net/forum?id=b54p3jCgBw	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Improving few-shot learning-based protein engineering with evolutionary sampling	[ "Muhammad Zaki Jawaid", "Aayushma Gautam", "T. Gainous", "Dan Hart", "Robin Yeo", "Timothy Daley" ]
Workshop/GenBio	https://openreview.net/forum?id=awRjbuWxe4	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Inpainting Protein Sequence and Structure with ProtFill	[ "Elizaveta Kozlova", "Arthur Valentin", "Daniel Nakhaee-Zadeh Gutierrez" ]
Workshop/GenBio	https://openreview.net/forum?id=YOGss3XXp0	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Fine-tuned protein language models capture T cell receptor stochasticity	[ "Lewis Cornwall", "Grisha Szep", "James Day", "S R Gokul Krishnan", "David Carter", "Jamie Blundell", "Lilly Wollman", "Neil Dalchau", "Aaron Sim" ]
Workshop/GenBio	https://openreview.net/forum?id=XgkYO1S2vM	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Harmonic Prior Self-conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design	[ "Hannes Stark", "Bowen Jing", "Regina Barzilay", "Tommi Jaakkola" ]
Workshop/GenBio	https://openreview.net/forum?id=T3ROexdopD	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Exploring the building blocks of cell organization as high-order network motifs with graph isomorphism network	[ "Yang Yu", "Shuang Wang", "Dong Xu", "Juexin Wang" ]
Workshop/GenBio	https://openreview.net/forum?id=SckdgVW3Kq	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Conditional Generation of Antigen Specific T-cell Receptor Sequences	[ "Dhuvarakesh Karthikeyan", "Colin Raffel", "Benjamin Vincent", "Alex Rubinsteyn" ]
Workshop/GenBio	https://openreview.net/forum?id=SJYY3nQ0cX	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Enhancing Language Models for Technical Domains with Dynamic Token Injection	[ "Giorgio Giannone", "Neil Tenenholtz", "James Hall", "Nicolo Fusi", "David Alvarez-Melis" ]
Workshop/GenBio	https://openreview.net/forum?id=Qrx0Dt3RBg	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Scalable Multimer Structure Prediction using Diffusion Models	[ "Peter Pao-Huang", "Bowen Jing", "Bonnie Berger" ]
Workshop/GenBio	https://openreview.net/forum?id=Pa6mFTZY4R	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Generative design for gene therapy: An in vivo validated method	[ "Farhan Damani", "David Brookes", "Jeffrey Chan", "Rishi Jajoo", "Alexander Mijalis", "Joyce Samson", "Flaviu Vadan", "Cameron Webster", "Stephen Malina", "Sam Sinai" ]
Workshop/GenBio	https://openreview.net/forum?id=PQa3giMLZp	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Bending and Binding: Predicting Protein Flexibility upon Ligand Interaction using Diffusion Models	[ "Xuejin Zhang", "Tomas Geffner", "Matt McPartlon", "Mehmet Akdel", "Dylan Abramson", "Graham Holt", "Alexander Goncearenco", "Luca Naef", "Michael Bronstein" ]
Workshop/GenBio	https://openreview.net/forum?id=Od1KtMeAYo	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Generating Molecular Conformer Fields	[ "Yuyang Wang", "Ahmed Elhag", "Navdeep Jaitly", "Joshua Susskind", "Miguel Bautista" ]
Workshop/GenBio	https://openreview.net/forum?id=Nf5BxVllgq	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	PoseCheck: Generative Models for 3D Structure-based Drug Design Produce Unrealistic Poses	[ "Charles Harris", "Kieran Didi", "Arian Jamasb", "Chaitanya Joshi", "Simon Mathis", "Pietro Lio", "Tom Blundell" ]
Workshop/GenBio	https://openreview.net/forum?id=Mg2DM0F3AY	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	A deep generative model of single-cell methylomic data	[ "Ethan Weinberger", "Su-In Lee" ]
Workshop/GenBio	https://openreview.net/forum?id=JPOW9FToYX	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Sampling Protein Language Models for Functional Protein Design	[ "Jeremie Theddy Darmawan", "Yarin Gal", "Pascal Notin" ]
Workshop/GenBio	https://openreview.net/forum?id=HVQoom7ip2	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Parameter-Efficient Fine-Tune on Open Pre-trained Transformers for Genomic Sequence	[ "Huixin Zhan", "Zijun Frank Zhang" ]
Workshop/GenBio	https://openreview.net/forum?id=FhFglOZbtZ	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	The Discovery of Binding Modes Requires Rethinking Docking Generalization	[ "Gabriele Corso", "Arthur Deng", "Nicholas Polizzi", "Regina Barzilay", "Tommi Jaakkola" ]
Workshop/GenBio	https://openreview.net/forum?id=F6LNvZNBsp	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	regLM: Designing realistic regulatory DNA with autoregressive language models	[ "Avantika Lal", "Tommaso Biancalani", "Gökcen Eraslan" ]
Workshop/GenBio	https://openreview.net/forum?id=Enqxq6TWoZ	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Epitope-specific antibody design using diffusion models on the latent space of ESM embeddings	[ "Tomer Cohen", "Dina Schneidman-Duhovny" ]
Workshop/GenBio	https://openreview.net/forum?id=Ejw5zOOgLp	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	An Energy Based Model for Incorporating Sequence Priors for Target-Specific Antibody Design	[ "Yining Huang", "Steffanie Paul", "Debora Marks" ]
Workshop/GenBio	https://openreview.net/forum?id=DpbMk2KOOX	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Genomic language model predicts protein co-regulation and function	[ "Yunha Hwang", "Andre Cornman", "Sergey Ovchinnikov", "Peter Girguis" ]
Workshop/GenBio	https://openreview.net/forum?id=DUjUJCqqA7	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Fine-tuning protein Language Models by ranking protein fitness	[ "Minji Lee", "Kyungmin Lee", "Jinwoo Shin" ]
Workshop/GenBio	https://openreview.net/forum?id=D6PJjvaE3D	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Amalga: Designable Protein Backbone Generation with Folding and Inverse Folding Guidance	[ "Shugao Chen", "Ziyao Li", "xiangxiang Zeng", "Guolin Ke" ]
Workshop/GenBio	https://openreview.net/forum?id=CsjGuWD7hk	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Integrating Protein Structure Prediction and Bayesian Optimization for Peptide Design	[ "Negin Manshour", "Fei He", "Duolin Wang", "Dong Xu" ]
Workshop/GenBio	https://openreview.net/forum?id=ChU7MCLk1J	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Binding Oracle: Fine-Tuning From Stability to Binding Free Energy	[ "Chengyue Gong", "Adam Klivans", "Jordan Wells", "James Loy", "qiang liu", "Alex Dimakis", "Daniel Diaz" ]
Workshop/GenBio	https://openreview.net/forum?id=CKCNCW9wxB	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Generative AI for designing and validating easily synthesizable and structurally novel antibiotics	[ "Kyle Swanson", "Gary Liu", "Denise Catacutan", "James Zou", "Jonathan Stokes" ]
Workshop/GenBio	https://openreview.net/forum?id=BE2hok0lES	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	UMD-fit: Generating Realistic Ligand Conformations for Distance-Based Deep Docking Models	[ "Eric Alcaide", "Ziyao Li", "Hang Zheng", "Zhifeng Gao", "Guolin Ke" ]
Workshop/GenBio	https://openreview.net/forum?id=AlPg6if5PU	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	DiffDock-Site: A Novel Paradigm for Enhanced Protein-Ligand Predictions through Binding Site Identification	[ "Huanlei Guo", "Song Liu", "Mingdi HU", "Yilun Lou", "Bingyi Jing" ]
Workshop/GenBio	https://openreview.net/forum?id=ALsSka1db3	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Through the looking glass: navigating in latent space to optimize over combinatorial synthesis libraries	[ "Aryan Pedawi", "Saulo De Oliveira", "Henry van den Bedem" ]
Workshop/GenBio	https://openreview.net/forum?id=9BQ3l8OVru	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Generative Flow Networks Assisted Biological Sequence Editing	[ "Pouya M. Ghari", "Alex Tseng", "Gökcen Eraslan", "Romain Lopez", "Tommaso Biancalani", "Gabriele Scalia", "Ehsan Hajiramezanali" ]
Workshop/GenBio	https://openreview.net/forum?id=8PbTU4exnV	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Combining Structure and Sequence for Superior Fitness Prediction	[ "Steffanie Paul", "Aaron Kollasch", "Pascal Notin", "Debora Marks" ]
Workshop/GenBio	https://openreview.net/forum?id=73wnK2BvWg	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Improving Precision in Language Models Learning from Invalid Samples	[ "Niels Larsen", "Giorgio Giannone", "Ole Winther", "Kai Blin" ]
Workshop/GenBio	https://openreview.net/forum?id=6NtRll9VdH	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Machine learning derived embeddings of bulk multi-omics data enable clinically significant representations in a pan-cancer cohort	[ "Sanjay Nagaraj", "ZACHARY MCCAW", "Theofanis Karaletsos", "Daphne Koller", "Anna Shcherbina" ]
Workshop/GenBio	https://openreview.net/forum?id=4k926QVVM4	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Target-Aware Variational Auto-Encoders for Ligand Generation with Multi-Modal Protein Modeling	[ "Khang Ngo", "Truong Son Hy" ]
Workshop/GenBio	https://openreview.net/forum?id=4HQtWpQ4WG	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	TopoDiff: Improving Protein Backbone Generation with Topology-aware Latent Encoding	[ "Yuyang Zhang", "Zinnia Ma", "Haipeng Gong" ]
Workshop/GenBio	https://openreview.net/forum?id=46okCAggF5	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	CodonBERT: Large Language Models for mRNA design and optimization	[ "Sizhen Li", "Saeed Moayedpour", "Ruijiang Li", "Michael Bailey", "Saleh Riahi", "Milad Miladi", "Jacob Miner", "Dinghai Zheng", "Jun Wang", "Akshay Balsubramani", "Khang Tran", "Minnie", "Monica Wu", "Xiaobo Gu", "Ryan Clinton", "Carla Asquith", "Joseph Skaleski", "Lianne Boeglin", "Sudha Chivukula", "Anusha Dias", "Fernando Ulloa Montoya", "Vikram Agarwal", "Ziv Bar-Joseph", "Sven Jager" ]
Workshop/GenBio	https://openreview.net/forum?id=1wa9JEanV5	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	DGFN: Double Generative Flow Networks	[ "Elaine Lau", "Nikhil Murali Vemgal", "Doina Precup", "Emmanuel Bengio" ]
Workshop/GenBio	https://openreview.net/forum?id=145TM9VQhx	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	AMP-Diffusion: Integrating Latent Diffusion with Protein Language Models for Antimicrobial Peptide Generation	[ "Tianlai Chen", "Pranay Vure", "Rishab Pulugurta", "Pranam Chatterjee" ]
Workshop/GenBio	https://openreview.net/forum?id=0gl0SJtd2E	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Identifying Neglected Hypotheses in Neurodegenerative Disease with Large Language Models	[ "Spencer Hey", "Darren Angle", "Christopher Chatham" ]
Workshop/MASEC	https://openreview.net/forum?id=tF464LogjS	wipp	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Defining and Mitigating Collusion in Multi-Agent Systems	[ "Jack Foxabbott", "Sam Deverett", "Kaspar Senft", "Samuel Dower", "Lewis Hammond" ]
Workshop/MASEC	https://openreview.net/forum?id=cYuE7uV4ut	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Oracles Followers: Stackelberg Equilibria in Deep Multi-Agent Reinforcement Learning	[ "Matthias Gerstgrasser", "David C. Parkes" ]
Workshop/MASEC	https://openreview.net/forum?id=XjHF5LWbNS	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Dynamics Model Based Adversarial Training For Competitive Reinforcement Learning	[ "Xuan Chen", "Guanhong Tao", "Xiangyu Zhang" ]
Workshop/MASEC	https://openreview.net/forum?id=QWXwhHQHLv	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Generation of Games for Opponent Model Differentiation	[ "David Milec", "Viliam Lisý", "Christopher Kiekintveld" ]
Workshop/MASEC	https://openreview.net/forum?id=KOZwk7BFc3	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Language Agents as Hackers: Evaluating Cybersecurity Skills with Capture the Flag	[ "John Yang", "Akshara Prabhakar", "Shunyu Yao", "Kexin Pei", "Karthik R Narasimhan" ]
Workshop/MASEC	https://openreview.net/forum?id=HPmhaOTseN	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Second-order Jailbreaks: Generative Agents Successfully Manipulate Through an Intermediary	[ "Mikhail Terekhov", "Romain Graux", "Eduardo Neville", "Denis Rosset", "Gabin Kolly" ]
Workshop/MASEC	https://openreview.net/forum?id=FuzJ9abiJb	wipp	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	RAVE: Enabling safety verification for realistic deep reinforcement learning systems	[ "Wenbo Guo", "Taesung Lee", "Kevin Eykholt", "Jiyong Jiang" ]
Workshop/MASEC	https://openreview.net/forum?id=FXZFrOvIoc	wipp	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	A Perfect Collusion Benchmark: How can AI agents be prevented from colluding with information-theoretic undetectability?	[ "Sumeet Ramesh Motwani", "Mikhail Baranchuk", "Lewis Hammond", "Christian Schroeder de Witt" ]
Workshop/MASEC	https://openreview.net/forum?id=5U8PGlJt2S	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Robust Q-Learning against State Perturbations: a Belief-Enriched Pessimistic Approach	[ "Xiaolin Sun", "Zizhan Zheng" ]
Workshop/MASEC	https://openreview.net/forum?id=5HuBX8LvuT	wipp	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Assessing Risks of Using Autonomous Language Models in Military and Diplomatic Planning	[ "Gabriel Mukobi", "Ann-Katrin Reuel", "Juan-Pablo Rivera", "Chandler Smith" ]
Workshop/MASEC	https://openreview.net/forum?id=4RFv40DWkp	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Stackelberg Games with Side Information	[ "Keegan Harris", "Steven Wu", "Maria Florina Balcan" ]
Workshop/MASEC	https://openreview.net/forum?id=4831vtb6Bp	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Safe Equilibrium	[ "Sam Ganzfried" ]
Workshop/MASEC	https://openreview.net/forum?id=3b8hfpqtlM	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Leading the Pack: N-player Opponent Shaping	[ "Alexandra Souly", "Timon Willi", "Akbir Khan", "Robert Kirk", "Chris Lu", "Edward Grefenstette", "Tim Rocktäschel" ]
Workshop/MASEC	https://openreview.net/forum?id=1Zb8JjrgSK	poster	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Harnessing the Power of Federated Learning in Federated Contextual Bandits	[ "Chengshuai Shi", "Kun Yang", "Ruida Zhou", "Cong Shen" ]
Workshop/MASEC	https://openreview.net/forum?id=15wSm5uiSE	wipp	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	Decentralized agent-based modeling	[ "Ayush Chopra", "Arnau Quera-Bofarull", "Nurullah Giray Kuru", "Ramesh Raskar" ]
Workshop/MASEC	https://openreview.net/forum?id=0O5vbRAWol	oral	NeurIPS2023	null	null	null	null	null	null	null	null	null	NaT	I See You! Robust Measurement of Adversarial Behavior	[ "Lars Ankile", "Matheus X.V. Ferreira", "David Parkes" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=zbEYTg2F1U	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	ASL Citizen: A Community-Sourced Dataset for Advancing Isolated Sign Language Recognition	[ "Aashaka Desai", "Lauren Berger", "Fyodor O Minakov", "Vanessa Milan", "Chinmay Singh", "Kriston L Pumphrey", "Richard Ladner", "Hal Daumé III", "Alex Xijie Lu", "Naomi Caselli", "Danielle Bragg" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=zQU33Uh3qM	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	Revisiting Out-of-distribution Robustness in NLP: Benchmarks, Analysis, and LLMs Evaluations	[ "Lifan Yuan", "Yangyi Chen", "Ganqu Cui", "Hongcheng Gao", "FangYuan Zou", "Xingyi Cheng", "Heng Ji", "Zhiyuan Liu", "Maosong Sun" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=zGthDp4yYe	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	Real3D-AD: A Dataset of Point Cloud Anomaly Detection	[ "Jiaqi Liu", "Guoyang Xie", "ruitao chen", "Xinpeng Li", "Jinbao Wang", "Yong Liu", "Chengjie Wang", "Feng Zheng" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=zFvvdJblZm	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	A High-Resolution Dataset for Instance Detection with Multi-View Object Capture	[ "QIANQIAN SHEN", "Yunhan Zhao", "Nahyun Kwon", "Jeeeun Kim", "Yanan Li", "Shu Kong" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=yXLyhKvK4D	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	OpenGSL: A Comprehensive Benchmark for Graph Structure Learning	[ "Zhiyao Zhou", "Sheng Zhou", "Bochao Mao", "Xuanyi Zhou", "Jiawei Chen", "Qiaoyu Tan", "Daochen Zha", "Yan Feng", "Chun Chen", "Can Wang" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=yWpY5I3XyX	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	FETV: A Benchmark for Fine-Grained Evaluation of Open-Domain Text-to-Video Generation	[ "Yuanxin Liu", "Lei Li", "Shuhuai Ren", "Rundong Gao", "Shicheng Li", "Sishuo Chen", "Xu Sun", "Lu Hou" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=yEf8NSqTPu	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	PopSign ASL v1.0: An Isolated American Sign Language Dataset Collected via Smartphones	[ "Thad Starner", "Sean Forbes", "Matthew So", "David Martin", "Rohit Sridhar", "Gururaj Deshpande", "Sam Sepah", "Sahir Shahryar", "Khushi Bhardwaj", "Tyler Kwok", "Daksh Sehgal", "Saad Hassan", "Bill Neubauer", "Sofia Anandi Vempala", "Alec Tan", "Jocelyn Heath", "Unnathi Utpal Kumar", "Priyanka Vijayaraghavan Mosur", "Tavenner M. Hall", "Rajandeep Singh", "Christopher Zhang Cui", "Glenn Cameron", "Sohier Dane", "Garrett Tanzer" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=xo6zDI8gvB	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	A Multi-modal Global Instance Tracking Benchmark (MGIT): Better Locating Target in Complex Spatio-temporal and Causal Relationship	[ "Shiyu Hu", "Dailing Zhang", "Meiqi Wu", "Xiaokun Feng", "Xuchen Li", "Xin Zhao", "Kaiqi Huang" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=xT3i5GS3zU	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	GSLB: The Graph Structure Learning Benchmark	[ "Zhixun Li", "Liang Wang", "Xin Sun", "Yifan Luo", "Yanqiao Zhu", "Dingshuo Chen", "Yingtao Luo", "Xiangxin Zhou", "Qiang Liu", "Shu Wu", "Liang Wang", "Jeffrey Xu Yu" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=xKYtTmtyI2	oral	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	Validated Image Caption Rating Dataset	[ "Lothar Narins", "Andrew T Scott", "Aakash Gautam", "Anagha Kulkarni", "Mar Castanon", "Benjamin Kao", "Shasta Ihorn", "Yue-Ting Siu", "James M Mason", "Alexander Mario Blum", "Ilmi Yoon" ]
Track/Datasets_and_Benchmarks	https://openreview.net/forum?id=xJ7YWXQOrg	poster	NeurIPS2023 D&B	null	null	null	null	null	null	null	null	null	NaT	Mathematical Capabilities of ChatGPT	[ "Simon Frieder", "Luca Pinchetti", "Alexis Chevalier", "Ryan-Rhys Griffiths", "Tommaso Salvatori", "Thomas Lukasiewicz", "Philipp Christian Petersen", "Julius Berner" ]

Workshop/WANT

https://openreview.net/forum?id=nErbvDkucY

oral

NeurIPS2023

null

NaT

Training and inference of large language models using 8-bit floating point

[ "Sergio P. Perez", "Yan Zhang", "James Briggs", "Charlie Blake", "Josh Levy-Kramer", "Paul Balanca", "Carlo Luschi", "Stephen Barlow", "Andrew W Fitzgibbon" ]

Workshop/WANT

https://openreview.net/forum?id=lWU12ye1qa

oral

NeurIPS2023

null

NaT

ConcatPlexer : Additional Dim1 Batching for Faster ViTs

[ "Donghoon Han", "Seunghyeon Seo", "Donghyeon Jeon", "Jiho Jang", "Chaerin Kong", "Nojun Kwak" ]

Workshop/WANT

https://openreview.net/forum?id=ipTojoQd1f

poster

NeurIPS2023

null

NaT

InstaTune: Instantaneous Neural Architecture Search During Fine-Tuning

[ "Sharath Nittur Sridhar", "Souvik Kundu", "Sairam Sundaresan", "Maciej Szankin", "Anthony Sarah" ]

Workshop/WANT

https://openreview.net/forum?id=iifVZTrqDb

poster

NeurIPS2023

null

NaT

ReLoRA: High-Rank Training Through Low-Rank Updates

[ "Vladislav Lialin", "Sherin Muckatira", "Namrata Shivagunde", "Anna Rumshisky" ]

Workshop/WANT

https://openreview.net/forum?id=iP4WcJ4EX0

poster

NeurIPS2023

null

NaT

Sparse Iso-FLOP Transformations for Maximizing Training Efficiency

[ "Vithursan Thangarasa", "Shreyas Saxena", "Abhay Gupta", "Sean Lie" ]

Workshop/WANT

https://openreview.net/forum?id=fhQIsEbvlN

poster

NeurIPS2023

null

NaT

Embarrassingly Simple Dataset Distillation

[ "Yunzhen Feng", "Shanmukha Ramakrishna Vedantam", "Julia Kempe" ]

Workshop/WANT

https://openreview.net/forum?id=doQwq4kwFc

poster

NeurIPS2023

null

NaT

A Quadratic Synchronization Rule for Distributed Deep Learning

[ "Xinran Gu", "Kaifeng Lyu", "Sanjeev Arora", "Jingzhao Zhang", "Longbo Huang" ]

Workshop/WANT

https://openreview.net/forum?id=ZmuLcqwzkl

poster

NeurIPS2023

null

NaT

DAREL: Data Reduction with Losses for Training Acceleration of Real and Hypercomplex Neural Networks

[ "Alexander Vladimirovich Demidovskij", "Aleksei Trutnev", "Artem Tugarev", "Igor Salnikov", "Stanislav Pavlov" ]

Workshop/WANT

https://openreview.net/forum?id=ZezqFPGZKS

poster

NeurIPS2023

null

NaT

Accelerating Deep Learning using Ivy

[ "Guillermo Sanchez-Brizuela", "Ved Patwardhan", "Matthew Barrett", "Paul Anderson", "Mustafa Hani", "Daniel James Lenton" ]

Workshop/WANT

https://openreview.net/forum?id=NxpWp0IhgB

poster

NeurIPS2023

null

NaT

LeanFlex-GKP: Advancing Hassle-Free Structured Pruning with Simple Flexible Group Count

[ "Jiamu Zhang", "Shaochen Zhong", "Andrew Ye", "Zirui Liu", "Kaixiong Zhou", "Xia Hu", "Shuai Xu", "Vipin Chaudhary" ]

Workshop/WANT

https://openreview.net/forum?id=Lh9CKbFV2I

poster

NeurIPS2023

null

NaT

Batched Low-Rank Adaptation of Foundation Models

[ "Yeming Wen", "Swarat Chaudhuri" ]

Workshop/WANT

https://openreview.net/forum?id=LHKmzWP7RN

poster

NeurIPS2023

null

NaT

Local LoRA: Memory-Efficient Fine-Tuning of Large Language Models

[ "Oscar Key", "Jean Kaddour", "Pasquale Minervini" ]

Workshop/WANT

https://openreview.net/forum?id=HyyhUIdx20

poster

NeurIPS2023

null

NaT

Bandit-Driven Batch Selection for Robust Learning under Label Noise

[ "Michal Lisicki", "Graham W. Taylor", "Mihai Nica" ]

Workshop/WANT

https://openreview.net/forum?id=GXl0agrQnI

poster

NeurIPS2023

null

NaT

Tiny Graph Convolutional Networks with Topologically Consistent Magnitude Pruning

[ "Hichem Sahbi" ]

Workshop/WANT

https://openreview.net/forum?id=93BaEweoRg

oral

NeurIPS2023

null

NaT

MatFormer: Nested Transformer for Elastic Inference

[ "Fnu Devvrit", "Sneha Kudugunta", "Aditya Kusupati", "Tim Dettmers", "Kaifeng Chen", "Inderjit S Dhillon", "Yulia Tsvetkov", "Hannaneh Hajishirzi", "Sham M. Kakade", "Ali Farhadi", "Prateek Jain" ]

Workshop/WANT

https://openreview.net/forum?id=4CLNFKi12w

poster

NeurIPS2023

null

NaT

Task Arithmetic with LoRA for Continual Learning

[ "Rajas Chitale", "Ankit Vaidya", "Aditya Kane", "Archana Santosh Ghotkar" ]

Workshop/WANT

https://openreview.net/forum?id=3GL2GETaaL

poster

NeurIPS2023

null

NaT

Dynamic Observation Policies in Observation Cost-Sensitive Reinforcement Learning

[ "Colin Bellinger", "Mark Crowley", "Isaac Tamblyn" ]

Workshop/WANT

https://openreview.net/forum?id=2KYHntOYKw

poster

NeurIPS2023

null

NaT

Cooperative Learning for Cost-Adaptive Inference

[ "Xingli Fang", "Richard M Bradford", "Jung-Eun Kim" ]

Workshop/GenBio

https://openreview.net/forum?id=y14a0nIECr

oral

NeurIPS2023

null

NaT

Protein Discovery with Discrete Walk-Jump Sampling

[ "Nathan Frey", "Dan Berenberg", "Karina Zadorozhny", "Joseph Kleinhenz", "Julien Lafrance-Vanasse", "Isidro Hotzel", "Yan Wu", "Stephen Ra", "Richard Bonneau", "Kyunghyun Cho", "Vladimir Gligorijevic", "Saeed Saremi" ]

Workshop/GenBio

https://openreview.net/forum?id=vXXEfmYsvS

poster

NeurIPS2023

null

NaT

SecretoGen: towards prediction of signal peptides for efficient protein secretion

[ "Felix Teufel", "Carsten Stahlhut", "Jan Refsgaard", "Henrik Nielsen", "Ole Winther", "Dennis Madsen" ]

Workshop/GenBio

https://openreview.net/forum?id=sWCsSKqkXa

poster

NeurIPS2023

null

NaT

ProteinRL: Reinforcement learning with generative protein language models for property-directed sequence design

[ "Matt Sternke", "Joel Karpiak" ]

Workshop/GenBio

https://openreview.net/forum?id=qP69kXPdJM

poster

NeurIPS2023

null

NaT

Protein generation with evolutionary diffusion: sequence is all you need

[ "Sarah Alamdari", "Nitya Thakkar", "Rianne van den Berg", "Alex Lu", "Nicolo Fusi", "Ava Amini", "Kevin Yang" ]

Workshop/GenBio

https://openreview.net/forum?id=mMKxmeBGTb

poster

NeurIPS2023

null

NaT

In vitro validated antibody design against multiple therapeutic antigens using generative inverse folding

[ "Amir Shanehsazzadeh" ]

Workshop/GenBio

https://openreview.net/forum?id=m2BtAzGzyZ

poster

NeurIPS2023

null

NaT

Unexplored regions of the protein sequence-structure map revealed at scale by a library of “foldtuned” language models

[ "Arjuna Subramanian", "Matt Thomson" ]

Workshop/GenBio

https://openreview.net/forum?id=lOIKlYR3vX

poster

NeurIPS2023

null

NaT

Targeting tissues via dynamic human systems modeling in generative design

[ "Zachary Fox", "Nolan English", "Belinda Akpa" ]

Workshop/GenBio

https://openreview.net/forum?id=jbamDZ374t

poster

NeurIPS2023

null

NaT

Causal Discovery in Gene Regulatory Networks with GFlowNet: Towards Scalability in Large Systems

[ "Trang Nguyen", "Alexander Tong", "Kanika Madan", "Yoshua Bengio", "Dianbo Liu" ]

Workshop/GenBio

https://openreview.net/forum?id=itp5RDMlNV

poster

NeurIPS2023

null

NaT

SE(3) denoising score matching for unsupervised binding energy prediction and nanobody design

[ "Wengong Jin", "Caroline Uhler", "Nir Hacohen" ]

Workshop/GenBio

https://openreview.net/forum?id=ineR4aPK9p

oral

NeurIPS2023

null

NaT

Analysis of cellular phenotypes with unbiased image-based generative models

[ "Ruben Fonnegra", "Mohammad Sanian", "Zitong Chen", "Lassi Paavolainen", "Juan Caicedo" ]

Workshop/GenBio

https://openreview.net/forum?id=iEGdcrWDV1

poster

NeurIPS2023

null

NaT

On Complex Network Dynamics of an In-Vitro Neuronal System during Rest and Gameplay

[ "Moein Khajehnejad", "Forough Habibollahi", "Alon Loeffler", "Brett Kagan", "Adeel Razi" ]

Workshop/GenBio

https://openreview.net/forum?id=htwkLbaFhk

poster

NeurIPS2023

null

NaT

Contextualized Networks Reveal Heterogeneous Transcriptomic Regulation in Tumors at Sample-Specific Resolution

[ "Caleb Ellington", "Ben Lengerich", "Thomas Watkins", "Jiekun Yang", "Hanxi Xiao", "Manolis Kellis", "Eric Xing" ]

Workshop/GenBio

https://openreview.net/forum?id=hYlfUTyp6p

oral

NeurIPS2023

null

NaT

TacoGFN: Target Conditioned GFlowNet for Drug Design

[ "Tony Shen", "Mohit Pandey", "Martin Ester" ]

Workshop/GenBio

https://openreview.net/forum?id=cplCMo4II4

poster

NeurIPS2023

null

NaT

Microenvironment Flows as Protein Engineers

[ "Chengyue Gong", "Lemeng Wu", "Daniel Diaz", "Xingchao Liu", "James Loy", "Adam Klivans", "qiang liu" ]

Workshop/GenBio

https://openreview.net/forum?id=bxZMKHtlL6

oral

NeurIPS2023

null

NaT

AntiFold: Improved antibody structure design using inverse folding

[ "Magnus Høie", "Alissa Hummer", "Tobias Olsen", "Morten Nielsen", "Charlotte Deane" ]

Workshop/GenBio

https://openreview.net/forum?id=bh8dw3guwY

poster

NeurIPS2023

null

NaT

DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

[ "Wei Lu", "Jixian Zhang", "Huang Weifeng", "Ziqiao Zhang", "Chengtao Li", "Shuangjia Zheng" ]

Workshop/GenBio

https://openreview.net/forum?id=bPcgbKDCUQ

poster

NeurIPS2023

null

NaT

Guiding diffusion models for antibody sequence and structure co-design with developability properties

[ "Amelia Villegas-Morcillo", "Jana Weber", "Marcel Reinders" ]

Workshop/GenBio

https://openreview.net/forum?id=b54p3jCgBw

poster

NeurIPS2023

null

NaT

Improving few-shot learning-based protein engineering with evolutionary sampling

[ "Muhammad Zaki Jawaid", "Aayushma Gautam", "T. Gainous", "Dan Hart", "Robin Yeo", "Timothy Daley" ]

Workshop/GenBio

https://openreview.net/forum?id=awRjbuWxe4

poster

NeurIPS2023

null

NaT

Inpainting Protein Sequence and Structure with ProtFill

[ "Elizaveta Kozlova", "Arthur Valentin", "Daniel Nakhaee-Zadeh Gutierrez" ]

Workshop/GenBio

https://openreview.net/forum?id=YOGss3XXp0

poster

NeurIPS2023

null

NaT

Fine-tuned protein language models capture T cell receptor stochasticity

[ "Lewis Cornwall", "Grisha Szep", "James Day", "S R Gokul Krishnan", "David Carter", "Jamie Blundell", "Lilly Wollman", "Neil Dalchau", "Aaron Sim" ]

Workshop/GenBio

https://openreview.net/forum?id=XgkYO1S2vM

poster

NeurIPS2023

null

NaT

Harmonic Prior Self-conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design

[ "Hannes Stark", "Bowen Jing", "Regina Barzilay", "Tommi Jaakkola" ]

Workshop/GenBio

https://openreview.net/forum?id=T3ROexdopD

oral

NeurIPS2023

null

NaT

Exploring the building blocks of cell organization as high-order network motifs with graph isomorphism network

[ "Yang Yu", "Shuang Wang", "Dong Xu", "Juexin Wang" ]

Workshop/GenBio

https://openreview.net/forum?id=SckdgVW3Kq

poster

NeurIPS2023

null

NaT

Conditional Generation of Antigen Specific T-cell Receptor Sequences

[ "Dhuvarakesh Karthikeyan", "Colin Raffel", "Benjamin Vincent", "Alex Rubinsteyn" ]

Workshop/GenBio

https://openreview.net/forum?id=SJYY3nQ0cX

poster

NeurIPS2023

null

NaT

Enhancing Language Models for Technical Domains with Dynamic Token Injection

[ "Giorgio Giannone", "Neil Tenenholtz", "James Hall", "Nicolo Fusi", "David Alvarez-Melis" ]

Workshop/GenBio

https://openreview.net/forum?id=Qrx0Dt3RBg

poster

NeurIPS2023

null

NaT

Scalable Multimer Structure Prediction using Diffusion Models

[ "Peter Pao-Huang", "Bowen Jing", "Bonnie Berger" ]

Workshop/GenBio

https://openreview.net/forum?id=Pa6mFTZY4R

poster

NeurIPS2023

null

NaT

Generative design for gene therapy: An in vivo validated method

[ "Farhan Damani", "David Brookes", "Jeffrey Chan", "Rishi Jajoo", "Alexander Mijalis", "Joyce Samson", "Flaviu Vadan", "Cameron Webster", "Stephen Malina", "Sam Sinai" ]

Workshop/GenBio

https://openreview.net/forum?id=PQa3giMLZp

poster

NeurIPS2023

null

NaT

Bending and Binding: Predicting Protein Flexibility upon Ligand Interaction using Diffusion Models

[ "Xuejin Zhang", "Tomas Geffner", "Matt McPartlon", "Mehmet Akdel", "Dylan Abramson", "Graham Holt", "Alexander Goncearenco", "Luca Naef", "Michael Bronstein" ]

Workshop/GenBio

https://openreview.net/forum?id=Od1KtMeAYo

poster

NeurIPS2023

null

NaT

Generating Molecular Conformer Fields

[ "Yuyang Wang", "Ahmed Elhag", "Navdeep Jaitly", "Joshua Susskind", "Miguel Bautista" ]

Workshop/GenBio

https://openreview.net/forum?id=Nf5BxVllgq

poster

NeurIPS2023

null

NaT

PoseCheck: Generative Models for 3D Structure-based Drug Design Produce Unrealistic Poses

[ "Charles Harris", "Kieran Didi", "Arian Jamasb", "Chaitanya Joshi", "Simon Mathis", "Pietro Lio", "Tom Blundell" ]

Workshop/GenBio

https://openreview.net/forum?id=Mg2DM0F3AY

poster

NeurIPS2023

null

NaT

A deep generative model of single-cell methylomic data

[ "Ethan Weinberger", "Su-In Lee" ]

Workshop/GenBio

https://openreview.net/forum?id=JPOW9FToYX

poster

NeurIPS2023

null

NaT

Sampling Protein Language Models for Functional Protein Design

[ "Jeremie Theddy Darmawan", "Yarin Gal", "Pascal Notin" ]

Workshop/GenBio

https://openreview.net/forum?id=HVQoom7ip2

poster

NeurIPS2023

null

NaT

Parameter-Efficient Fine-Tune on Open Pre-trained Transformers for Genomic Sequence

[ "Huixin Zhan", "Zijun Frank Zhang" ]

Workshop/GenBio

https://openreview.net/forum?id=FhFglOZbtZ

oral

NeurIPS2023

null

NaT

The Discovery of Binding Modes Requires Rethinking Docking Generalization

[ "Gabriele Corso", "Arthur Deng", "Nicholas Polizzi", "Regina Barzilay", "Tommi Jaakkola" ]

Workshop/GenBio

https://openreview.net/forum?id=F6LNvZNBsp

poster

NeurIPS2023

null

NaT

regLM: Designing realistic regulatory DNA with autoregressive language models

[ "Avantika Lal", "Tommaso Biancalani", "Gökcen Eraslan" ]

Workshop/GenBio

https://openreview.net/forum?id=Enqxq6TWoZ

poster

NeurIPS2023

null

NaT

Epitope-specific antibody design using diffusion models on the latent space of ESM embeddings

[ "Tomer Cohen", "Dina Schneidman-Duhovny" ]

Workshop/GenBio

https://openreview.net/forum?id=Ejw5zOOgLp

poster

NeurIPS2023

null

NaT

An Energy Based Model for Incorporating Sequence Priors for Target-Specific Antibody Design

[ "Yining Huang", "Steffanie Paul", "Debora Marks" ]

Workshop/GenBio

https://openreview.net/forum?id=DpbMk2KOOX

poster

NeurIPS2023

null

NaT

Genomic language model predicts protein co-regulation and function

[ "Yunha Hwang", "Andre Cornman", "Sergey Ovchinnikov", "Peter Girguis" ]

Workshop/GenBio

https://openreview.net/forum?id=DUjUJCqqA7

poster

NeurIPS2023

null

NaT

Fine-tuning protein Language Models by ranking protein fitness

[ "Minji Lee", "Kyungmin Lee", "Jinwoo Shin" ]

Workshop/GenBio

https://openreview.net/forum?id=D6PJjvaE3D

oral

NeurIPS2023

null

NaT

Amalga: Designable Protein Backbone Generation with Folding and Inverse Folding Guidance

[ "Shugao Chen", "Ziyao Li", "xiangxiang Zeng", "Guolin Ke" ]

Workshop/GenBio

https://openreview.net/forum?id=CsjGuWD7hk

poster

NeurIPS2023

null

NaT

Integrating Protein Structure Prediction and Bayesian Optimization for Peptide Design

[ "Negin Manshour", "Fei He", "Duolin Wang", "Dong Xu" ]

Workshop/GenBio

https://openreview.net/forum?id=ChU7MCLk1J

oral

NeurIPS2023

null

NaT

Binding Oracle: Fine-Tuning From Stability to Binding Free Energy

[ "Chengyue Gong", "Adam Klivans", "Jordan Wells", "James Loy", "qiang liu", "Alex Dimakis", "Daniel Diaz" ]

Workshop/GenBio

https://openreview.net/forum?id=CKCNCW9wxB

poster

NeurIPS2023

null

NaT

Generative AI for designing and validating easily synthesizable and structurally novel antibiotics

[ "Kyle Swanson", "Gary Liu", "Denise Catacutan", "James Zou", "Jonathan Stokes" ]

Workshop/GenBio

https://openreview.net/forum?id=BE2hok0lES

poster

NeurIPS2023

null

NaT

UMD-fit: Generating Realistic Ligand Conformations for Distance-Based Deep Docking Models

[ "Eric Alcaide", "Ziyao Li", "Hang Zheng", "Zhifeng Gao", "Guolin Ke" ]

Workshop/GenBio

https://openreview.net/forum?id=AlPg6if5PU

oral

NeurIPS2023

null

NaT

DiffDock-Site: A Novel Paradigm for Enhanced Protein-Ligand Predictions through Binding Site Identification

[ "Huanlei Guo", "Song Liu", "Mingdi HU", "Yilun Lou", "Bingyi Jing" ]

Workshop/GenBio

https://openreview.net/forum?id=ALsSka1db3

poster

NeurIPS2023

null

NaT

Through the looking glass: navigating in latent space to optimize over combinatorial synthesis libraries

[ "Aryan Pedawi", "Saulo De Oliveira", "Henry van den Bedem" ]

Workshop/GenBio

https://openreview.net/forum?id=9BQ3l8OVru

oral

NeurIPS2023

null

NaT

Generative Flow Networks Assisted Biological Sequence Editing

[ "Pouya M. Ghari", "Alex Tseng", "Gökcen Eraslan", "Romain Lopez", "Tommaso Biancalani", "Gabriele Scalia", "Ehsan Hajiramezanali" ]

Workshop/GenBio

https://openreview.net/forum?id=8PbTU4exnV

poster

NeurIPS2023

null

NaT

Combining Structure and Sequence for Superior Fitness Prediction

[ "Steffanie Paul", "Aaron Kollasch", "Pascal Notin", "Debora Marks" ]

Workshop/GenBio

https://openreview.net/forum?id=73wnK2BvWg

poster

NeurIPS2023

null

NaT

Improving Precision in Language Models Learning from Invalid Samples

[ "Niels Larsen", "Giorgio Giannone", "Ole Winther", "Kai Blin" ]

Workshop/GenBio

https://openreview.net/forum?id=6NtRll9VdH

poster

NeurIPS2023

null

NaT

Machine learning derived embeddings of bulk multi-omics data enable clinically significant representations in a pan-cancer cohort

[ "Sanjay Nagaraj", "ZACHARY MCCAW", "Theofanis Karaletsos", "Daphne Koller", "Anna Shcherbina" ]

Workshop/GenBio

https://openreview.net/forum?id=4k926QVVM4

poster

NeurIPS2023

null

NaT

Target-Aware Variational Auto-Encoders for Ligand Generation with Multi-Modal Protein Modeling

[ "Khang Ngo", "Truong Son Hy" ]

Workshop/GenBio

https://openreview.net/forum?id=4HQtWpQ4WG

oral

NeurIPS2023

null

NaT

TopoDiff: Improving Protein Backbone Generation with Topology-aware Latent Encoding

[ "Yuyang Zhang", "Zinnia Ma", "Haipeng Gong" ]

Workshop/GenBio

https://openreview.net/forum?id=46okCAggF5

oral

NeurIPS2023

null

NaT

CodonBERT: Large Language Models for mRNA design and optimization

[ "Sizhen Li", "Saeed Moayedpour", "Ruijiang Li", "Michael Bailey", "Saleh Riahi", "Milad Miladi", "Jacob Miner", "Dinghai Zheng", "Jun Wang", "Akshay Balsubramani", "Khang Tran", "Minnie", "Monica Wu", "Xiaobo Gu", "Ryan Clinton", "Carla Asquith", "Joseph Skaleski", "Lianne Boeglin", "Sudha Chivukula", "Anusha Dias", "Fernando Ulloa Montoya", "Vikram Agarwal", "Ziv Bar-Joseph", "Sven Jager" ]

Workshop/GenBio

https://openreview.net/forum?id=1wa9JEanV5

poster

NeurIPS2023

null

NaT

DGFN: Double Generative Flow Networks

[ "Elaine Lau", "Nikhil Murali Vemgal", "Doina Precup", "Emmanuel Bengio" ]

Workshop/GenBio

https://openreview.net/forum?id=145TM9VQhx

poster

NeurIPS2023

null

NaT

AMP-Diffusion: Integrating Latent Diffusion with Protein Language Models for Antimicrobial Peptide Generation

[ "Tianlai Chen", "Pranay Vure", "Rishab Pulugurta", "Pranam Chatterjee" ]

Workshop/GenBio

https://openreview.net/forum?id=0gl0SJtd2E

poster

NeurIPS2023

null

NaT

Identifying Neglected Hypotheses in Neurodegenerative Disease with Large Language Models

[ "Spencer Hey", "Darren Angle", "Christopher Chatham" ]

Workshop/MASEC

https://openreview.net/forum?id=tF464LogjS

wipp

NeurIPS2023

null

NaT

Defining and Mitigating Collusion in Multi-Agent Systems

[ "Jack Foxabbott", "Sam Deverett", "Kaspar Senft", "Samuel Dower", "Lewis Hammond" ]

Workshop/MASEC

https://openreview.net/forum?id=cYuE7uV4ut

oral

NeurIPS2023

null

NaT

Oracles Followers: Stackelberg Equilibria in Deep Multi-Agent Reinforcement Learning

[ "Matthias Gerstgrasser", "David C. Parkes" ]

Workshop/MASEC

https://openreview.net/forum?id=XjHF5LWbNS

poster

NeurIPS2023

null

NaT

Dynamics Model Based Adversarial Training For Competitive Reinforcement Learning

[ "Xuan Chen", "Guanhong Tao", "Xiangyu Zhang" ]

Workshop/MASEC

https://openreview.net/forum?id=QWXwhHQHLv

poster

NeurIPS2023

null

NaT

Generation of Games for Opponent Model Differentiation

[ "David Milec", "Viliam Lisý", "Christopher Kiekintveld" ]

Workshop/MASEC

https://openreview.net/forum?id=KOZwk7BFc3

oral

NeurIPS2023

null

NaT

Language Agents as Hackers: Evaluating Cybersecurity Skills with Capture the Flag

[ "John Yang", "Akshara Prabhakar", "Shunyu Yao", "Kexin Pei", "Karthik R Narasimhan" ]

Workshop/MASEC

https://openreview.net/forum?id=HPmhaOTseN

poster

NeurIPS2023

null

NaT

Second-order Jailbreaks: Generative Agents Successfully Manipulate Through an Intermediary

[ "Mikhail Terekhov", "Romain Graux", "Eduardo Neville", "Denis Rosset", "Gabin Kolly" ]

Workshop/MASEC

https://openreview.net/forum?id=FuzJ9abiJb

wipp

NeurIPS2023

null

NaT

RAVE: Enabling safety verification for realistic deep reinforcement learning systems

[ "Wenbo Guo", "Taesung Lee", "Kevin Eykholt", "Jiyong Jiang" ]

Workshop/MASEC

https://openreview.net/forum?id=FXZFrOvIoc

wipp

NeurIPS2023

null

NaT

A Perfect Collusion Benchmark: How can AI agents be prevented from colluding with information-theoretic undetectability?

[ "Sumeet Ramesh Motwani", "Mikhail Baranchuk", "Lewis Hammond", "Christian Schroeder de Witt" ]

Workshop/MASEC

https://openreview.net/forum?id=5U8PGlJt2S

poster

NeurIPS2023

null

NaT

Robust Q-Learning against State Perturbations: a Belief-Enriched Pessimistic Approach

[ "Xiaolin Sun", "Zizhan Zheng" ]

Workshop/MASEC

https://openreview.net/forum?id=5HuBX8LvuT

wipp

NeurIPS2023

null

NaT

Assessing Risks of Using Autonomous Language Models in Military and Diplomatic Planning

[ "Gabriel Mukobi", "Ann-Katrin Reuel", "Juan-Pablo Rivera", "Chandler Smith" ]

Workshop/MASEC

https://openreview.net/forum?id=4RFv40DWkp

poster

NeurIPS2023

null

NaT

Stackelberg Games with Side Information

[ "Keegan Harris", "Steven Wu", "Maria Florina Balcan" ]

Workshop/MASEC

https://openreview.net/forum?id=4831vtb6Bp

poster

NeurIPS2023

null

NaT

Safe Equilibrium

[ "Sam Ganzfried" ]

Workshop/MASEC

https://openreview.net/forum?id=3b8hfpqtlM

oral

NeurIPS2023

null

NaT

Leading the Pack: N-player Opponent Shaping

[ "Alexandra Souly", "Timon Willi", "Akbir Khan", "Robert Kirk", "Chris Lu", "Edward Grefenstette", "Tim Rocktäschel" ]

Workshop/MASEC

https://openreview.net/forum?id=1Zb8JjrgSK

poster

NeurIPS2023

null

NaT

Harnessing the Power of Federated Learning in Federated Contextual Bandits

[ "Chengshuai Shi", "Kun Yang", "Ruida Zhou", "Cong Shen" ]

Workshop/MASEC

https://openreview.net/forum?id=15wSm5uiSE

wipp

NeurIPS2023

null

NaT

Decentralized agent-based modeling

[ "Ayush Chopra", "Arnau Quera-Bofarull", "Nurullah Giray Kuru", "Ramesh Raskar" ]

Workshop/MASEC

https://openreview.net/forum?id=0O5vbRAWol

oral

NeurIPS2023

null

NaT

I See You! Robust Measurement of Adversarial Behavior

[ "Lars Ankile", "Matheus X.V. Ferreira", "David Parkes" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=zbEYTg2F1U

poster

NeurIPS2023 D&B

null

NaT

ASL Citizen: A Community-Sourced Dataset for Advancing Isolated Sign Language Recognition

[ "Aashaka Desai", "Lauren Berger", "Fyodor O Minakov", "Vanessa Milan", "Chinmay Singh", "Kriston L Pumphrey", "Richard Ladner", "Hal Daumé III", "Alex Xijie Lu", "Naomi Caselli", "Danielle Bragg" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=zQU33Uh3qM

poster

NeurIPS2023 D&B

null

NaT

Revisiting Out-of-distribution Robustness in NLP: Benchmarks, Analysis, and LLMs Evaluations

[ "Lifan Yuan", "Yangyi Chen", "Ganqu Cui", "Hongcheng Gao", "FangYuan Zou", "Xingyi Cheng", "Heng Ji", "Zhiyuan Liu", "Maosong Sun" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=zGthDp4yYe

poster

NeurIPS2023 D&B

null

NaT

Real3D-AD: A Dataset of Point Cloud Anomaly Detection

[ "Jiaqi Liu", "Guoyang Xie", "ruitao chen", "Xinpeng Li", "Jinbao Wang", "Yong Liu", "Chengjie Wang", "Feng Zheng" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=zFvvdJblZm

poster

NeurIPS2023 D&B

null

NaT

A High-Resolution Dataset for Instance Detection with Multi-View Object Capture

[ "QIANQIAN SHEN", "Yunhan Zhao", "Nahyun Kwon", "Jeeeun Kim", "Yanan Li", "Shu Kong" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=yXLyhKvK4D

poster

NeurIPS2023 D&B

null

NaT

OpenGSL: A Comprehensive Benchmark for Graph Structure Learning

[ "Zhiyao Zhou", "Sheng Zhou", "Bochao Mao", "Xuanyi Zhou", "Jiawei Chen", "Qiaoyu Tan", "Daochen Zha", "Yan Feng", "Chun Chen", "Can Wang" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=yWpY5I3XyX

poster

NeurIPS2023 D&B

null

NaT

FETV: A Benchmark for Fine-Grained Evaluation of Open-Domain Text-to-Video Generation

[ "Yuanxin Liu", "Lei Li", "Shuhuai Ren", "Rundong Gao", "Shicheng Li", "Sishuo Chen", "Xu Sun", "Lu Hou" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=yEf8NSqTPu

poster

NeurIPS2023 D&B

null

NaT

PopSign ASL v1.0: An Isolated American Sign Language Dataset Collected via Smartphones

[ "Thad Starner", "Sean Forbes", "Matthew So", "David Martin", "Rohit Sridhar", "Gururaj Deshpande", "Sam Sepah", "Sahir Shahryar", "Khushi Bhardwaj", "Tyler Kwok", "Daksh Sehgal", "Saad Hassan", "Bill Neubauer", "Sofia Anandi Vempala", "Alec Tan", "Jocelyn Heath", "Unnathi Utpal Kumar", "Priyanka Vijayaraghavan Mosur", "Tavenner M. Hall", "Rajandeep Singh", "Christopher Zhang Cui", "Glenn Cameron", "Sohier Dane", "Garrett Tanzer" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=xo6zDI8gvB

poster

NeurIPS2023 D&B

null

NaT

A Multi-modal Global Instance Tracking Benchmark (MGIT): Better Locating Target in Complex Spatio-temporal and Causal Relationship

[ "Shiyu Hu", "Dailing Zhang", "Meiqi Wu", "Xiaokun Feng", "Xuchen Li", "Xin Zhao", "Kaiqi Huang" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=xT3i5GS3zU

poster

NeurIPS2023 D&B

null

NaT

GSLB: The Graph Structure Learning Benchmark

[ "Zhixun Li", "Liang Wang", "Xin Sun", "Yifan Luo", "Yanqiao Zhu", "Dingshuo Chen", "Yingtao Luo", "Xiangxin Zhou", "Qiang Liu", "Shu Wu", "Liang Wang", "Jeffrey Xu Yu" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=xKYtTmtyI2

oral

NeurIPS2023 D&B

null

NaT

Validated Image Caption Rating Dataset

[ "Lothar Narins", "Andrew T Scott", "Aakash Gautam", "Anagha Kulkarni", "Mar Castanon", "Benjamin Kao", "Shasta Ihorn", "Yue-Ting Siu", "James M Mason", "Alexander Mario Blum", "Ilmi Yoon" ]

Track/Datasets_and_Benchmarks

https://openreview.net/forum?id=xJ7YWXQOrg

poster

NeurIPS2023 D&B

null

NaT

Mathematical Capabilities of ChatGPT

[ "Simon Frieder", "Luca Pinchetti", "Alexis Chevalier", "Ryan-Rhys Griffiths", "Tommaso Salvatori", "Thomas Lukasiewicz", "Philipp Christian Petersen", "Julius Berner" ]