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|---|---|
### Bug description
Here's the error I was seeing.
```
(base) minimal: quarto publish --log-level debug confluence
Quarto v99.9.9
? Publish update to: › Add a new destination...
? Publish with account: › [email protected] (https://cwickham.atlassian.net/)
[Confluence] [General] publish {
account: {
type: 1,
name: "[email protected]",
server: "https://cwickham.atlassian.net/",
token: "ATATT3xFfGF0tSKFA9RvdTX2E36tkbKr0IQ7BBRQ5aC6Yi6rjvbAG-IAsk-vMV4PeL9fKEHkhyWFV8tL4YyvWmFXV8CXjojuKwcW..."
},
type: "site",
_input: "/Users/wickhamc/Documents/posit/confluence/minimal",
title: "Minimal Project",
_slug: "minimal-project",
_options: {
input: {
dir: "/Users/wickhamc/Documents/posit/confluence/minimal",
engines: [ "markdown" ],
files: { input: [Array], resources: [Array], config: [Array], configResources: [Array] },
config: { project: [Object], website: [Object], format: [Object], language: [Object] },
formatExtras: [AsyncFunction: formatExtras]
},
server: null,
token: undefined,
id: undefined,
render: true,
prompt: true,
browser: true
},
publishRecord: undefined
}
? Space or Parent Page URL: › https://cwickham.atlassian.net/wiki/spaces/QTS
[✓] Verifying...
[Confluence] [General] publish {
parent: { space: "QTS", parent: undefined },
server: "https://cwickham.atlassian.net/",
id: 950275,
key: "QTS"
}
ERROR: TypeError: Cannot read properties of undefined (reading 'id')
TypeError: Cannot read properties of undefined (reading 'id')
at publishSite (file:///Users/wickhamc/Documents/posit/quarto-cli/src/publish/confluence/confluence.ts:614:61)
at Object.publish (file:///Users/wickhamc/Documents/posit/quarto-cli/src/publish/confluence/confluence.ts:831:18)
at async publishSite (file:///Users/wickhamc/Documents/posit/quarto-cli/src/publish/publish.ts:114:36)
at async publish (file:///Users/wickhamc/Documents/posit/quarto-cli/src/command/publish/cmd.ts:278:9)
at async doPublish (file:///Users/wickhamc/Documents/posit/quarto-cli/src/command/publish/cmd.ts:198:7)
at async publishAction (file:///Users/wickhamc/Documents/posit/quarto-cli/src/command/publish/cmd.ts:261:7)
at async Command.fn (file:///Users/wickhamc/Documents/posit/quarto-cli/src/command/publish/cmd.ts:156:11)
at async Command.execute (file:///Users/wickhamc/Documents/posit/quarto-cli/src/vendor/deno.land/x/[email protected]/command/command.ts:1790:7)
at async quarto (file:///Users/wickhamc/Documents/posit/quarto-cli/src/quarto.ts:119:3)
at async file:///Users/wickhamc/Documents/posit/quarto-cli/src/quarto.ts:151:5
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "allenmanning",
"comments": 2,
"created_at": "2023-03-02T16:52:57Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4605,
"state": "closed",
"title": "Can't publish to top level of space",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4605"
} |
With the latest `quarto-cli` on `main`, a gt table that contains a header does not get rendered correctly. Here is a minimal reproducible example that creates a 1x1 table in two ways: (1) without a header (*not* using the `tab_header()` function) (this renders correctly), and (2) with a header (using the `tab_header()` function (this doesn't render correctly).
Here is the .qmd:
````
---
format: html
---
```{r}
#| echo: false
library(gt)
exibble[1, 1] %>% gt()
```
```{r}
#| echo: false
exibble[1, 1] %>% gt() %>% tab_header("title")
```
````
Here is a screen capture of the rendered document:
<img width="1058" alt="gt-table-quarto" src="https://user-images.githubusercontent.com/5612024/222486124-5afed58f-30a0-4ef8-8227-5fd79904a91a.png">
This may be related to https://github.com/quarto-dev/quarto-cli/issues/4419 since there is a gt table (more complex) with a header that has similar rendering problems.
| {
"assignee": "cscheid",
"comments": 1,
"created_at": "2023-03-02T16:16:12Z",
"creator": "rich-iannone",
"is_pull_request": false,
"labels": [
"upstream",
"tables"
],
"locked": false,
"milestone": "v1.3",
"number": 4603,
"state": "closed",
"title": "A gt table with header causes table to not render correctly",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4603"
} |
### Bug description
For example, go to https://r4ds.hadley.nz/data-visualize.html#summary, scroll to the bottom and confirm `zenodo` exists in the text. But it's not found by search.
<img width="1130" alt="Screenshot 2023-03-02 at 10 02 11 AM" src="https://user-images.githubusercontent.com/5965649/222466328-baaf6b1b-78da-4c0c-82e5-3ddd9e31bac7.png">
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [ ] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-03-02T15:04:39Z",
"creator": "mine-cetinkaya-rundel",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4601,
"state": "closed",
"title": "Text in book footnotes not found in search",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4601"
} |
### Bug description
Good morning Quarto crew!
Running on RStudio 2022.12.0+353 with Quarto 1.2.269 on Mac OSX
I would expect to be able to split up lists by providing a newline in between the list elements.
The [Quarto Markdown docs](https://quarto.org/docs/authoring/markdown-basics.html#lists) do not cover how to "split up" lists, for example, long lists to be used in presentations or multi-column layouts. There are various ways depending on the markdown flavor based on Google search, but most are reliant on HTML, and it's not clear if they will transfer 1:1 across formats, for example, at [Stack Overflow](https://stackoverflow.com/questions/23821014/markdown-having-multiple-lists).
However, per the [Pandoc guide](https://pandoc.org/MANUAL.html#ending-a-list), I guess the best method is a blank HTML comment which is parsed and ignored?
```
You can use the same trick if you want two consecutive lists instead of one big list:
1. one
2. two
3. three
<!-- -->
1. uno
2. dos
3. tres
```
In general, lists are kind of inconsistent across markdown flavors, and it may be worth beefing up the Quarto documentation or linking out to the canonical methods; again, see something like [Stack Overflow](https://meta.stackexchange.com/questions/123903/inconsistent-incorrect-breaks-newlines-in-lists) or [Pandoc guide](https://pandoc.org/MANUAL.html#ending-a-list).
Ideally, we could do something like this to safely and across format indicates to the Quarto/Pandoc parser that a list is broken up into several unrelated lists.
```
- List 1
- Still list 1
- Still list 1
\n
- List 2
- List 2
\n
- List 3
- List 3
```
However, the various mechanisms don't appear to work as far as I'd expect (and this reprex also breaks sourcecode embedding? 😬 )
Reprex at: [QuartoPub](https://thomasmock.quarto.pub/test-lists/)
```
---
title: " "
format:
html:
code-tools:
source: true
---
# `layout-ncol`
Using two spaces and a blank return, this should be three columns with list elements in each but returns as one long list.
::::{layout-ncol=3}
- List 1
- List 1
- List 1
- List 2
- List 2
- List 2
- List 3
- List 3
- List 3
::::
# `layout-ncol`
This should be three columns with list elements in each but adding `\n` breaks the orientation.
::::{layout-ncol=3}
- List 1
- List 1
- List 1
\n
- List 2
- List 2
- List 2
\n
- List 3
- List 3
- List 3
::::
# `layout-ncol` with sub-div
This works, but requires manually "breaking" the list with another nested div
::::{layout-ncol=3}
- Column 1
:::{#col2}
- Column 2
:::
- Column 3
::::
# `layout`
This works with a different layout, but only because the list is split up by paragraph of text.
::: {layout="[ [1], [1,1] ]"}
Lorem Ipsum is simply dummy text of the printing and typesetting industry. Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book. It has survived not only five centuries, but also the leap into electronic typesetting, remaining essentially unchanged. It was popularised in the 1960s with the release of Letraset sheets containing Lorem Ipsum passages, and more recently with desktop publishing software like Aldus PageMaker including versions of Lorem Ipsum.
- Bullets
- More bullets
- Some additional bullets
Lorem Ipsum is simply dummy text of the printing and typesetting industry. Lorem Ipsum has been the industry's standard dummy text ever since the 1500s, when an unknown printer took a galley of type and scrambled it to make a type specimen book. It has survived not only five centuries, but also the leap into electronic typesetting, remaining essentially unchanged. It was popularised in the 1960s with the release of Letraset sheets containing Lorem Ipsum passages, and more recently with desktop publishing software like Aldus PageMaker including versions of Lorem Ipsum.
:::
```
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cwickham",
"comments": 4,
"created_at": "2023-03-02T14:45:03Z",
"creator": "jthomasmock",
"is_pull_request": false,
"labels": [
"documentation",
"enhancement"
],
"locked": false,
"milestone": "v1.4",
"number": 4600,
"state": "open",
"title": "Splitting up lists is not intuitive or consistent",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4600"
} |
This page https://quarto.org/docs/output-formats/html-basics.html#includes is out of date as only `include-in-header`, `include-before-body`, `include-after-body` should be used, with the `text:` sub field if needed
PDF doc is correct https://quarto.org/docs/output-formats/pdf-basics.html#latex-includes
@cwickham assigning you too in case you want to tackle this. Otherwise I'll do it after bug fixing | {
"assignee": "cderv",
"comments": 0,
"created_at": "2023-03-02T14:44:24Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "v1.3",
"number": 4599,
"state": "closed",
"title": "Fix HTML includes documentation to be the same as PDF",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4599"
} |
### Bug description
When I try to render the following on VSCode
```bash
---
title: "Untitled"
format: html
---
```{julia}
println()
```
I got
```
Quarto v1.3.235
ERROR: PermissionDenied: Permission denied (os error 13), mkdir '/run/user/1960/jt'
```
my setup
```
[✓] Checking versions of quarto binary dependencies...
Pandoc version 3.1.0: OK
Dart Sass version 1.55.0: OK
[✓] Checking versions of quarto dependencies......OK
[✓] Checking Quarto installation......OK
Version: 1.3.235
Path: /Net/Groups/BGI/people/dpabon/bin/quarto/quarto-1.3.235/bin
[✓] Checking basic markdown render....OK
[✓] Checking Python 3 installation....OK
Version: 3.10.8 (Conda)
Path: /User/homes/dpabon/miniconda3/bin/python
Jupyter: 5.1.5
[✓] Checking Jupyter engine render....OK
```
OS:
```
Distributor ID: CentOS
Description: CentOS Linux release 8.3.2011
Release: 8.3.2011
```
VSCode:
```
version: 1.76.0
```
Quarto extension:
```
1.71.0
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 17,
"created_at": "2023-03-02T10:47:07Z",
"creator": "dpabon",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro",
"triaged-to",
"stale"
],
"locked": false,
"milestone": "v1.4",
"number": 4594,
"state": "closed",
"title": "ERROR: PermissionDenied: Permission denied (os error 13), mkdir '/run/user/1960/jt'",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4594"
} |
I have a similar problem (to #4510 maybe)
I am updating my syllabus which I prepared with Quarto using Rstudio. There was a hyperlink that wasn't working.
I changed it. But somehow, when I render the document, the following happens:
```
The filename, directory name, or volume label syntax is incorrect. (os error 123), stat
'D:\Onedrive\R\projects\kjayhan.github.io\syllabi\(https:\www.nyu.edu\about\policies-guidelines-compliance\policies-and-guidelines\academic-integrity-for-students-at-nyu.html)'
```
It seems that somehow the link got mixed up into a syntax, but how? And how to solve this? Any ideas?
_Originally posted by @kjayhan in https://github.com/quarto-dev/quarto-cli/issues/4510#issuecomment-1451258285_
| {
"assignee": "cderv",
"comments": 13,
"created_at": "2023-03-02T09:43:09Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro",
"windows",
"stale"
],
"locked": false,
"milestone": "v1.4",
"number": 4593,
"state": "closed",
"title": "Rendering issue because of wrong built path from resource links",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4593"
} |
STR
- Create a document
````
---
title: "Bug [Confluence] Callout Notes with inner code-blocks can cause errors. #4591"
---
::: callout-note
Lorem ipsum dolor sit amet, consectetur adipiscing elit.
`<directory>/**`
:::
````
- Publish to confluence
Expected: No error and Inner code block is rendered and placed in callout.
Result: API Error: 400 - Bad Request as it sees an un-closed void element `<directory>`
````
<ac:structured-macro ac:name="info" ac:schema-version="1" ac:macro-id="1c8062cd-87de-4701-a698-fd435e057468"><ac:rich-text-body>Lorem ipsum dolor sit amet, consectetur adipiscing elit. <directory>/**</ac:rich-text-body></ac:structured-macro>
```` | {
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-03-02T09:05:30Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4591,
"state": "closed",
"title": "[Confluence] Callout Notes not rendering contents can cause errors.",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4591"
} |
Some Observable input elements do not follow the column layout inside `panel: input` blocks.
````
---
title: "input-col-test"
format: html
execute:
echo: false
---
# Heading
```{ojs}
//| panel: input
//| layout-ncol: 2
viewof is_a = Inputs.toggle({label: "A"})
viewof is_b = Inputs.toggle({label: "B"})
```
````
Wrapping it into ```:::{.panel-input}``` etc. does not help in this case.
I've observed this with toggles.
The alignment of the tickboxes against text vertically and spacing horizontally also seems odd - see below, although here the column layout is observed.
````
---
title: "input-col-test"
format: html
execute:
echo: false
---
# Heading
```{ojs}
//| panel: input
//| layout-ncol: 2
viewof is_b = Inputs.checkbox(["one", "two"], {label: "B"})
viewof is_a = Inputs.toggle({label: "A"})
```
````
 | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-03-01T21:41:24Z",
"creator": "petrbouchal",
"is_pull_request": false,
"labels": [
"enhancement",
"ojs-engine"
],
"locked": false,
"milestone": "v1.4",
"number": 4587,
"state": "open",
"title": "Column layout (e.g. `layout-ncol: 2`) not honoured in `panel: input`",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4587"
} |
### Bug description
In quarto v1.3.237 there is a bug (not present in v1.2.x) regarding how the date appears in the citation.
As a reprex, I have the following yaml:
```
title: "Citation date bug"
format: html
date: 2023-03-01
citation: true
```
In the generated citation, the bibtex part is fine, but for the attribution, it gives the year as 23AD (not 2023).
Example at <https://ellakaye.github.io/quarto-bug/> from repo <https://github.com/EllaKaye/quarto-bug>
I'm on macOS Ventura 13.2.1 working in RStudio 2023.03.0-daily+30. That said, I switched back to Quarto v1.2.335 and the issue went away, so it does seem to be an issue with the latest Quarto rather than the OS or RStudio.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 3,
"created_at": "2023-03-01T21:16:43Z",
"creator": "EllaKaye",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4586,
"state": "closed",
"title": "Bug in v1.3.237 with citation date",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4586"
} |
### Bug description
```{r}
RStudio 2023.03.0-daily+70 "Cherry Blossom" Daily (236fd07b9b86d184ae614fffe20e44f8f2b1937b, 2023-01-09) for Windows
Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) RStudio/2023.03.0-daily+70 Chrome/108.0.5359.62 Electron/22.0.0 Safari/537.36
```
For some reason my PDF is improperly referencing indexes made with the index at the end. The index will have a link to page 55 but the text is at a different page?
```{r}
pdf:
documentclass: krantz
include-in-header:
text: |
\usepackage{makeidx}
\makeindex
\usepackage{fvextra}
\DefineVerbatimEnvironment{Highlighting}{Verbatim}{breaklines,commandchars=\\\{\}}
\DefineVerbatimEnvironment{OutputCode}{Verbatim}{breaklines,commandchars=\\\{\}}
include-after-body:
text: |
\printindex
lof: true
lot: true
prefer-html: true
toc: true
number-sections: true
colorlinks: true
toc-depth: 5
keep-md: false
keep-tex: true
latex-min-runs: 4
latex-max-runs: 7
crossref:
chapters: true
lof-title: "List of Figures"
lot-title: "List of Tables"
```
### Checklist
- [ ] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 10,
"created_at": "2023-03-01T19:54:37Z",
"creator": "jkylearmstrong",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": "v1.3",
"number": 4585,
"state": "closed",
"title": "makeidx improperly referencing page numbers. ",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4585"
} |
### Bug description
When defining both html and revealjs formats in the config (**_quarto.yml**), if format is not defined in individual qmd files, it gives this error:
```
ERROR: NotFound: No such file or directory (os error 2), rename '/home/user/Desktop/test/report.html' -> '/home/user/Desktop/test/_site/report.html'
```
To reproduce, create three files:
**_quarto.yml**
```
project:
type: website
website:
title: "Test"
format:
html:
theme: "flatly"
revealjs:
theme: "beige"
```
**presentation.qmd**
```
---
title: "Presentation"
format: revealjs
---
## Slide 1
This is a presentation
## Slide 2
More contents here
```
**report.qmd**
```
---
title: "Report"
---
## Heading 1
This is a report
```
Then run `quarto render`. Adding `format: html` to **report.qmd** fixes this issue.
It took me a while to troubleshoot as the error message was not helpful.
```
🢒 quarto --version
1.2.1
🢒 lsb_release -a
No LSB modules are available.
Distributor ID: Zorin
Description: Zorin OS 16.2
Release: 16
Codename: focal
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 1,
"created_at": "2023-03-01T17:58:29Z",
"creator": "royfrancis",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "Future",
"number": 4583,
"state": "open",
"title": "ERROR: NotFound: No such file or directory (os error 2), rename",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4583"
} |
### Bug description
## Step 1. Create book project
```bash
quarto create-project mybook --type book
```
## Step 2. Set `lang: zh` and add `appendices` in `_quarto.yml`
```yml
project:
type: book
lang: zh
book:
title: "mybook"
author: "Jane Doe"
date: "3/1/2023"
chapters:
- index.qmd
- intro.qmd
- references.qmd
appendices:
- summary.qmd
bibliography: references.bib
format:
html:
theme: cosmo
pdf:
documentclass: scrreprt
```
## Step 3. Render Book
<img width="839" alt="appdix" src="https://user-images.githubusercontent.com/12031874/222173416-7a78085b-1171-47ab-87c6-a883fd6d9e04.png">
## Session Info
I have tested in Quarto 1.2.269 and Quarto 1.2.335 and Quarto 1.3.235
RStudio 2022.12.0+353 "Elsbeth Geranium" Release (7d165dcfc1b6d300eb247738db2c7076234f6ef0, 2022-12-03) for macOS
Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) RStudio/2022.12.0+353 Chrome/102.0.5005.167 Electron/19.1.3 Safari/537.36
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2023-03-01T14:48:25Z",
"creator": "XiangyunHuang",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4578,
"state": "closed",
"title": "`lang: zh` doesn't translate Appendix to `附录` when output is html",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4578"
} |
### Bug description
Hi,
It appears despite running "quarto publish gh-pages --no-browse", the rendered code is staying in intermediate directory and not getting deployed/copied into gh-pages explicitly. Despite following the instructions from https://quarto.org/docs/publishing/github-pages.html
Thanks
### Checklist
- [ ] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [ ] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [ ] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 9,
"created_at": "2023-03-01T04:36:33Z",
"creator": "ksasi",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro",
"publishing"
],
"locked": false,
"milestone": null,
"number": 4575,
"state": "closed",
"title": "quarto publish gh-pages --no-browse Issue",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4575"
} |
### Bug description
Last tested using Quarto v1.3.234 on WSL2 (Ubuntu 22.04.1 LTS) and Windows 10, the test from issue #3901 https://github.com/quarto-dev/quarto-cli/blob/main/tests/docs/partition-cell-options/issue-3901.qmd results in the following error when running `quarto preview issue-3901.qmd --to html`:
```
Starting c kernel...Done
Executing 'test-c-2.ipynb'
Cell 1/4...Done
Cell 2/4...ERROR:
Unable to determine type for "'The classic ''Hello, world!'' program for C.' "
```
In my own tests, it seems to have to do with having a colon (":") or a comma (",") in the input string. For example:
````
---
jupyter: c
---
## Success
```{c}
/*| label: helloWorld1 */
/*| fig-cap: "«single»: “words”" */
/*| fig-alt: "C source code for \"hello world\" program" */
/*| echo: true */
#include <stdio.h>
int main() {
printf("Hello, world!");
}
```
## Failure
```{c}
/*| label: helloWorld2 */
/*| fig-cap: "«single» “words”" */
/*| fig-alt: "C source code for \"hello, world\" program" */
/*| echo: true */
#include <stdio.h>
int main() {
printf("Hello, world!");
}
```
````
I'm not sure whether the error happens for languages that use only an initial comment character, but I would guess that this would have been reported earlier were that the case.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [x] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 3,
"created_at": "2023-03-01T00:54:30Z",
"creator": "bvancil",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 4573,
"state": "closed",
"title": "Unable to determine type for... error parsing yaml cell options",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4573"
} |
Seems like a simple, good idea? | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-02-28T16:40:27Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.3",
"number": 4567,
"state": "closed",
"title": "Report version on every `quarto` invocation",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4567"
} |
How to put my css file in setting ,Because I want always to render my css file without the need to put him everytime in every new project
_Originally posted by @charbelnaser in https://github.com/quarto-dev/quarto-cli/issues/746#issuecomment-1447810749_
| {
"assignee": null,
"comments": 0,
"created_at": "2023-02-28T09:10:57Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [],
"locked": true,
"milestone": null,
"number": 4561,
"state": "closed",
"title": "[revealjs] Globally set css file in setting and not in each project ",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4561"
} |
STR
- Create a quarto document with title "Title1"
- Publish to Confluence
- Rename the document to "Title2"
- Publish to Confluence
Expected: Page is renamed to "Title2"
Result: Page remains "Title1" | {
"assignee": "allenmanning",
"comments": 1,
"created_at": "2023-02-28T09:02:42Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4560,
"state": "closed",
"title": "Page title isn't updating when changed",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4560"
} |
### Bug description
Hi,
I have a [website](https://pnrr.datibenecomune.it/) (the [repo](https://github.com/ondata/italian-public-sector-pnrr-data-guide)) in Italian, but the search tooltip is in English.
And it seems to me I do not have this label in `_language.yml`.
I'm using quarto 1.3.228 in Debian 11.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-02-28T08:21:32Z",
"creator": "aborruso",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4559,
"state": "closed",
"title": "Search tooltip label not in _language.yml",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4559"
} |
### Bug description
Rendering a quarto html document triggers iframe links to open in the default browser. This is slightly annoying but not terrible when embedding simple webpages, but embedding the reveal js quarto docs triggered 15+ tabs to open (the website page and all slides in the example deck).
The behaviour occurred when rendering via RStudio render button and via `quarto render` command inside RStudio terminal.
Minimal reproducible example tested on:
- Quarto version: 1.2.335, 1.2.269
- RStudio IDE: (Version 2022.12.0+353 (2022.12.0+353)
- MacOS: Ventura 13.1
- Default Browser: Safari, Chrome
````md
---
title: "Untitled"
format: revealjs
---
## Quarto
Quarto enables you to weave together content and executable code into a finished presentation. To learn more about Quarto presentations see <https://quarto.org/docs/presentations/>.
## Iframe
```{=html}
<iframe width="780" height="500" src="https://quarto.org/docs/presentations/revealjs/" title="Quarto revealjs Documentation"></iframe>
```
````
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 3,
"created_at": "2023-02-28T02:36:52Z",
"creator": "cynthiahqy",
"is_pull_request": false,
"labels": [
"bug",
"rstudio"
],
"locked": false,
"milestone": null,
"number": 4557,
"state": "closed",
"title": "Rendering should not open embedded iframe links",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4557"
} |
### Bug description
When adding check boxes with markdown style, it seems misaligned
```
Here comes the check boxes
- [ ] Check box 1
- [x] Check box 2
It doesn't seem to be aligned
::: {.callout-note}
## Let's see inside callout blocks
- [ ] Check box 1
- [x] Check box 2
It doesn't feel right...
:::
```
RStudio 2022.12.0 Build 353
``` r
#> - Session info ---------------------------------------------------------------
#> setting value
#> version R version 4.1.1 (2021-08-10)
#> os Windows 10 x64 (build 19044)
#> system x86_64, mingw32
#> ui RTerm
#> language (EN)
#> collate Portuguese_Brazil.1252
#> ctype Portuguese_Brazil.1252
#> tz America/Sao_Paulo
#> date 2023-02-27
#> pandoc 2.19.2 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
#>
#> - Packages -------------------------------------------------------------------
#> package * version date (UTC) lib source
#> cli 3.4.1 2022-09-23 [1] CRAN (R 4.1.3)
#> digest 0.6.29 2021-12-01 [1] CRAN (R 4.1.3)
#> evaluate 0.15 2022-02-18 [1] CRAN (R 4.1.3)
#> fansi 1.0.3 2022-03-24 [1] CRAN (R 4.1.3)
#> fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.1.1)
#> fs 1.5.2 2021-12-08 [1] CRAN (R 4.1.3)
#> glue 1.6.2 2022-02-24 [1] CRAN (R 4.1.3)
#> highr 0.9 2021-04-16 [1] CRAN (R 4.1.1)
#> htmltools 0.5.2 2021-08-25 [1] CRAN (R 4.1.1)
#> knitr 1.38 2022-03-25 [1] CRAN (R 4.1.3)
#> lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.1.3)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.1.3)
#> pillar 1.8.1 2022-08-19 [1] CRAN (R 4.1.3)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.1.1)
#> purrr 1.0.0.9000 2023-01-05 [1] Github (tidyverse/purrr@ee904f3)
#> R.cache 0.15.0 2021-04-30 [1] CRAN (R 4.1.1)
#> R.methodsS3 1.8.1 2020-08-26 [1] CRAN (R 4.1.1)
#> R.oo 1.24.0 2020-08-26 [1] CRAN (R 4.1.1)
#> R.utils 2.11.0 2021-09-26 [1] CRAN (R 4.1.1)
#> reprex 2.0.2 2022-08-17 [1] CRAN (R 4.1.3)
#> rlang 1.0.6 2022-09-24 [1] CRAN (R 4.1.3)
#> rmarkdown 2.18.1 2022-11-15 [1] Github (rstudio/rmarkdown@b87ca50)
#> rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.1.1)
#> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.1.3)
#> stringi 1.7.6 2021-11-29 [1] CRAN (R 4.1.2)
#> stringr 1.5.0 2022-12-02 [1] CRAN (R 4.1.3)
#> styler 1.7.0 2022-03-13 [1] CRAN (R 4.1.3)
#> tibble 3.1.8 2022-07-22 [1] CRAN (R 4.1.3)
#> utf8 1.2.2 2021-07-24 [1] CRAN (R 4.1.1)
#> vctrs 0.5.0 2022-10-22 [1] CRAN (R 4.1.3)
#> withr 2.5.0 2022-03-03 [1] CRAN (R 4.1.3)
#> xfun 0.30 2022-03-02 [1] CRAN (R 4.1.3)
#> yaml 2.3.5 2022-02-21 [1] CRAN (R 4.1.2)
#>
#> [1] C:/Users/Bruno/Documents/R/win-library/4.1
#> [2] C:/Program Files/R/R-4.1.1/library
#>
#> ------------------------------------------------------------------------------
```
<sup>Created on 2023-02-27 with [reprex v2.0.2](https://reprex.tidyverse.org)</sup>
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2023-02-28T02:02:29Z",
"creator": "brunomioto",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4556,
"state": "closed",
"title": "Misaligned check boxes",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4556"
} |
### Bug description
I'm using Quarto on an M1 Mac (13.1 (22C65)) inside VS Code (1.75.1).
Quarto version 1.2.335
The front matter of the document is:
```
format:
pdf:
toc: true
toc-depth: 2
number-sections: true
number-depth: 3
colorlinks: true
lof: true
lot: true
csl: mike-fs-harvard.csl
bibliography: bib.bib
papersize: a4
```
The .csl file is modified in only one aspect - using the Zotero visual editor - to add the "entry-spacing" value. This value sits inside the <bibliography> tag:
```
<bibliography et-al-min="5" et-al-use-first="4" entry-spacing="4" hanging-indent="true">
```
Whatever the value is set to, the spacing between the bibliography entries does not change...it is supposed to, but it doesn't.
I'm rendering to PDF using the "Render" button in VS Code.
Other values such as the "hanging-indent" value do work.
It seems like a bug.
The .zip contains a sample test.qmd file, a bib.bib file and the test.csl file.
The bibliography entries should show 4 lines spacing between them...they show 1.
[test-quarto-csl.zip](https://github.com/quarto-dev/quarto-cli/files/10845718/test-quarto-csl.zip)
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 10,
"created_at": "2023-02-28T01:37:45Z",
"creator": "Zuline",
"is_pull_request": false,
"labels": [
"bug",
"upstream"
],
"locked": false,
"milestone": "v1.4",
"number": 4555,
"state": "open",
"title": "Quarto 1.2.335 not respecting CSL \"entry-spacing\" value",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4555"
} |
I use RStudio to compile the following qmd file:
````yaml
---
title: "AAA"
author: "BBB"
format: pdf
toc: false
fontsize: "12"
pdf-engine: pdflatex
number-sections: true
colorlinks: true
# Where to place figure and table captions (top, bottom, or margin)
cap-location: bottom
code-line-numbers: true
execute:
echo: false
warning: false
fig-env: 'figure'
fig-lp: 'fig:'
fig-align: 'center'
fig-pos: 'htb'
---
```{r AAA}
#| cache: true
#| fig.cap: BBB
#| fig.height: 2
#| fig.width: 4
library(ggplot2)
mydata <- data.frame(x=1:5, y=11:15)
ggplot(mydata) +
geom_point(aes(x = x, y = y), size = 0.2)
```
````
The generated TeX document contains
```tex
\begin{htb}[htb]
{\centering \includegraphics{intro_files/figure-pdf/AAA-1.pdf}
}
\caption{BBB}
\end{htb}
```
and crashes.
Am I doing something wrong? | {
"assignee": "cderv",
"comments": 3,
"created_at": "2023-02-27T18:40:11Z",
"creator": "timothee-bacri",
"is_pull_request": false,
"labels": [
"bug",
"pandoc-lua"
],
"locked": false,
"milestone": "v1.3",
"number": 4568,
"state": "closed",
"title": "pdf from qmd file, bug with fig.pos",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4568"
} |
Investigate if it is possible to disable page-level comments. Doing so can help prevent a case where a publish can remove these comments. | {
"assignee": "allenmanning",
"comments": 1,
"created_at": "2023-02-27T14:05:39Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence",
"research spike"
],
"locked": false,
"milestone": null,
"number": 4552,
"state": "closed",
"title": "[spike] Lock down page-level comments",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4552"
} |
Use the contents of an `index.qmd` document as the contents for the parent folder of a Confluence project.
- When the parent folder is first created, check to see if there is an immediate child `index.qmd` that can be used to populate it's `title` and body.
- When the child `index.qmd` is updated, also update the parent. | {
"assignee": "cwickham",
"comments": 3,
"created_at": "2023-02-27T14:03:43Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4551,
"state": "closed",
"title": "[Confluence] \"Flatten\" `index.qmd` to parent folder.",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4551"
} |
### Bug description
Using Quarto 1.3.231 on Mac OS 13.2.1 i haven't yet gotten images to show up in my confluence post. Publishing via CLI in VSCode.
**HTML Rendering**
**HTML Rendering in Confluence (without images)**
**Minimal example**
```
---
format: confluence-html
---
# test
foo
```{r}
plot(1)
```
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "allenmanning",
"comments": 3,
"created_at": "2023-02-27T10:33:56Z",
"creator": "henningsway",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4550,
"state": "closed",
"title": "No Images, when rendering content to confluence",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4550"
} |
STR
- Attempt to publish [Quarto Web](https://github.com/quarto-dev/quarto-web/tree/task/test-confluence)
Expected: Publishes without error
Actual: Sometimes we receive from Confluence a `REFUSED_STREAM` `stream error received: refused stream before processing any application logic`
https://httpwg.org/specs/rfc9113.html#REFUSED_STREAM
https://httpwg.org/specs/rfc9113.html#Reliability
````
ERROR: TypeError: error sending request for url
(https://rstudiopbc-sandbox-249.atlassian.net/wiki/rest/api/content/search?cql=title=%22Docs%2Fpresentations%2Frevealjs%2Fdemo%2Fmini%2Fzoom%22&spaces=QTCT&cqlcontext=%7B%22contentStatuses%22%3A%5B%22archived%22%2C%20%22current%22%2C%20%22draft%22%5D%7D):
http2 error: stream error received: refused stream before processing any application logic
````
We should try a simple one-time retry in this case. We can consider a more complex retry strategy if this is a common problem. | {
"assignee": "allenmanning",
"comments": 1,
"created_at": "2023-02-27T08:33:46Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4548,
"state": "closed",
"title": "Unneeded matching pages call triggers throttling on some large Confluence projects.",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4548"
} |
### Bug description
Mermaid's output is affected by the code highlighting theme specified with `highlight-style` in the YAML options.
### Output (with bug)
### Expected output
### Reprex (Quarto Reveal.js)
````
---
title: "Mermaid style bug"
format:
revealjs:
theme: default
highlight-style: nord
editor: source
---
## Mermaid diagram
```{mermaid}
flowchart LR
A[Hard edge] --> B(Round edge)
B --> C{Decision}
C --> D[Result one]
C --> E[Result two]
```
````
### Session info
OS: macOS Monterey 12.2
RStudio version: 2022.07.1 Build 554
Quarto version: 1.2.231
```
> sessionInfo()
R version 4.2.1 (2022-06-23)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Monterey 12.2
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
locale:
[1] es_ES.UTF-8/es_ES.UTF-8/es_ES.UTF-8/C/es_ES.UTF-8/es_ES.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets
[6] methods base
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [x] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 2,
"created_at": "2023-02-26T13:32:23Z",
"creator": "pedrotercero3",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro",
"mermaid"
],
"locked": false,
"milestone": null,
"number": 4545,
"state": "closed",
"title": "Mermaid output style is affected by `highlight-style` theme in reveal.js",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4545"
} |
### Bug description
There is a code path we have where literal file names are treated as globs for resource resolution, which leads to files with similar paths in alternate output dirs (e.g. from a `--profile` render) being vacuumed up as resources when they shouldn't.
Here is a repro from @cwickham : https://github.com/cwickham/dir_exclude
The extra file is getting picked up right here: https://github.com/quarto-dev/quarto-cli/blob/7902764a0b5d4e9a67b9459a8ec08c5c3fa055bd/src/command/render/resources.ts#L53
If I change the globs as follows: ``globs.map((glob) => `./${glob}`)`` then the issue goes away (as the `./` prefix causes it to only match on file paths from the root)
I was going to make this fix but then realized that there is an awful lot going on with resources/globs and I don't want to break anything unwittingly. @dragonstyle Hopefully this gives you enough context to figure out what the right fix is.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-02-26T12:42:52Z",
"creator": "jjallaire",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4544,
"state": "closed",
"title": "resource files can end up globing up outputs from other directories",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4544"
} |
### Bug description
Hi,
I have a website (the [site](https://pnrr.datibenecomune.it/), the [repo](https://github.com/ondata/italian-public-sector-pnrr-data-guide)) in which I set `repo-actions: [edit, issue]`, and in which I set for some pages:
```
format:
html:
toc: false
```
For these pages (in example [this](https://pnrr.datibenecomune.it/about.html)), the actions links are in center of the footer. But these are not readable from smartphone (these are ok from desktop)
I'm using quarto 1.3.228 in Debian 11.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 1,
"created_at": "2023-02-26T09:56:10Z",
"creator": "aborruso",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4543,
"state": "closed",
"title": "Action links in nav footer: wrongly rendered in mobile",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4543"
} |
### Bug description
When labeling figures, capitals in the label string cause the entire label to be unrecognized. "WARNING: Unable to resolve crossref @fig-data-weeeWho" Nothing in the documentation for references makes this appear to be expected behavior. This also impacts the numbering and captions. This behavior is appearing in Visual Studio Code 1.75.1 run on a MacBook Pro M1 Pro running Mac OS 13.1.
May be related to [#1186](https://github.com/quarto-dev/quarto-cli/issues/1186). Sorry, not sure how to shrink the sample to <20 lines.
````
---
title: 'Labeling Bug'
format:
pdf:
include-in-header:
text: |
\addtokomafont{disposition}{\rmfamily}
jupyter: python3
---
```{python}
#| echo: false
# Workspace initialization
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
df = pd.DataFrame(np.random.randint(0, 100, size = (100, 2)))
```
# Demonstration
Lorem ipsum lanum et al. Lorem ipsum lanum et al. Lorem ipsum lanum et al. Lorem ipsum lanum et al. Lorem ipsum lanum et al. Lorem ipsum lanum et al. Lorem ipsum lanum et al. See @fig-data-weee and @fig-data-weeeWho.
```{python}
#| echo: false
#| label: fig-data-weee
#| fig-cap:
#| - "Random Data"
plt.scatter(df[0], df[1], color = '#e34234')
```
```{python}
#| echo: false
#| label: fig-data-weeeWho
#| fig-cap:
#| - "Random Data"
plt.scatter(df[0], df[1], color = '#e34234')
```
````
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2023-02-26T07:15:58Z",
"creator": "davidmvermillion",
"is_pull_request": false,
"labels": [
"bug",
"crossref",
"triaged-to"
],
"locked": false,
"milestone": "v1.4",
"number": 4542,
"state": "open",
"title": "Capitals in Figure label strings break rendering",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4542"
} |
### Bug description
The problem:
- I have tried multiple approaches to having an image on my website flushed left (or right) where my bio (long text start, long text stop) can wrap around it. I've tried kable as well, nothing.
*System Information*
IDE: R Studio [Version 2022.12.0+353 (2022.12.0+353)]
R Version: 4.2.2
Provided through Netlify
Rendered on Desktop (not GitHub)
Operating System: MacOS Ventura 13.1
Attempt 1
````
---
title: "About"
---
Long text start
Long text end
````
Attempt 2
- I've tried various settings with the R code chunks working with YAML to have the text wrap around this figure, but this approach to images doesn't seem to have any solutions either.
````
---
title: "About"
---
Long text start
```{r echo=FALSE, fig.align = "left", out.width='50%'}
knitr::include_graphics('image.png')
```
Long text end
````
Many thanks!
### Checklist
- [ ] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [ ] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [ ] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 0,
"created_at": "2023-02-26T01:10:09Z",
"creator": "sophiestrazie",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": true,
"milestone": null,
"number": 4540,
"state": "closed",
"title": "Issue Wrapping Text Around Image in Quarto (HTML Output)",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4540"
} |
### Bug description
Hi,
didn't test on the latest nightly release, but
the issue is as follows:
trying to get google-analytics working on my quarto blog, but this doesn't get an influx of data.
If I investigate the site there is an error popping up which seems to me related to the tag implementation.
The issue can be reproduced as follows:
1. https://quarto.org/docs/websites/website-tools.html
and investigating,
for me the first hightlighted issue is the one related to the g-tag:
2. **Issue** Laden fehlgeschlagen für das <script> mit der Quelle **"https://www.googletagmanager.com/gtag/js?id=G-FV9Z7SDZ0M".**
So it seems that maybe the google script is not correctly implemented, or this should be like that?
Thanks a lot for checking this out.
## in short: A screenshot of the site investigation:
3. 
Rstudio version:
"Elsbeth Geranium" Release (7d165dcf, 2022-12-03) for Windows
Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) RStudio/2022.12.0+353 Chrome/102.0.5005.167 Electron/19.1.3 Safari/537.36
Windows 10 x64
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 11,
"created_at": "2023-02-25T20:55:01Z",
"creator": "dschief001",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": "v1.4",
"number": 4538,
"state": "closed",
"title": "Google Analytics tag integration - no data influx",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4538"
} |
### Bug description
Using `quarto create` -> `project` from the RStudio terminal creates an RStudio project, but the project file ends in `.rproj`. There seem to be a lot of things that assume a capital R in `.Rproj`, the usethis package for one. Is there any reason this shouldn't be `.Rproj`?:
https://github.com/quarto-dev/quarto-cli/blob/46ce2673bc3a5ce74051c7bc5a4a9c3678e25e7a/src/command/create/editor.ts#L160
Mac OS, dev quarto, RStudio Version 2023.03.0-daily+302 (2023.03.0-daily+302)
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-02-25T20:21:34Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4537,
"state": "closed",
"title": "`quarto create` from RStudio creates a project file with extension `.rproj` not `.Rproj`",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4537"
} |
### Bug description
I'm using Quarto v1.3.222 on macOS 13.2.1.
The simplest example I could find is a Jupyter notebook with a single cell with source:
```py
print("{[}")
```
Then run `quarto render` and hit the error:
```
Error running Lua:
/Applications/quarto/share/filters/qmd-reader.lua:83: malformed pattern (missing ']')
stack traceback:
/Applications/quarto/share/filters/qmd-reader.lua:83: in function 'escape_invalid_tags'
/Applications/quarto/share/filters/qmd-reader.lua:96: in function 'Reader'
```
Adding a `]` after the `[` doesn't help.
I encountered this while displaying the following dictionary:
```py
{'cells': [], 'metadata': {}, 'nbformat': 4, 'nbformat_minor': 5}
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2023-02-25T07:16:48Z",
"creator": "seeM",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 4535,
"state": "closed",
"title": "Lua error when cell output contains square brackets in braces",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4535"
} |
### Bug description
Currently, cross references to chapters or section only display the chapter/section number. It would be nice to have the ability to display the title of the referenced chapter/section either in addition to or in place of its reference.
@cscheid
### Checklist
- [ ] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [ ] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [ ] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-02-25T00:42:07Z",
"creator": "mine-cetinkaya-rundel",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 4532,
"state": "open",
"title": "Feature request: Ability to show the title of the cross-referenced chapter/section instead of just its number",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4532"
} |
### Bug description
When I search for a word that is a crossref prefix, it appears as though it's not found. For example, in the image below the word "Chapter" shows up in Chapter 2, but it's not in the search results, even when I scroll down.
<img width="1538" alt="Screenshot 2023-02-24 at 7 32 37 PM" src="https://user-images.githubusercontent.com/5965649/221325528-eda87df8-084d-4c6f-a410-e50ba36ea718.png">
However if I explicitly search for "Chapter 11" it does bring up Chapter 2 as a search result, though it doesn't show the right place in the chapter.
<img width="1538" alt="Screenshot 2023-02-24 at 7 32 46 PM" src="https://user-images.githubusercontent.com/5965649/221325548-438a7031-c76a-4cc4-aa72-03567f46d091.png">
### Checklist
- [ ] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [ ] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [ ] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-02-25T00:36:44Z",
"creator": "mine-cetinkaya-rundel",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 4531,
"state": "open",
"title": "Words in crossref prefixes and search results",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4531"
} |
Suppose you have the following slide
````markdown
---
format: revealjs
---
## This is a veeeeeeeeeeeeeeeeerrrrryyyy loooooooooooooooooooooooooooonnnnngggggg title
```{r}
plot(cars, main = "Title is taking up a huge amount of space so the plot is tiny")
```
````
The result is a slide with a tiny plot and giant title:
<img width="685" alt="Screenshot 2023-02-24 at 6 45 51 PM" src="https://user-images.githubusercontent.com/5965649/221321954-1dda34d4-0375-4dd1-8461-5a9210862152.png">
Applying `.r-fit-text` to slide title solves the issue as it results in behaviour that is like PowerPoint or Keynote:
````markdown
---
format: revealjs
---
## [This is a veeeeeeeeeeeeeeeeerrrrryyyy loooooooooooooooooooooooooooonnnnngggggg title]{.r-fit-text}
```{r}
plot(cars, main = "Title is taking up a huge amount of space so the plot is tiny")
```
````
<img width="692" alt="Screenshot 2023-02-24 at 6 46 50 PM" src="https://user-images.githubusercontent.com/5965649/221322057-4555b0f6-2e8b-44b6-a3b7-76ee0851987c.png">
It would be nice if `.r-fit-text` behaviour was default, and if so, we should add something to the docs about how to disable it at https://quarto.org/docs/presentations/revealjs/advanced.html#fit-text. | {
"assignee": "jjallaire",
"comments": 5,
"created_at": "2023-02-24T23:48:12Z",
"creator": "mine-cetinkaya-rundel",
"is_pull_request": false,
"labels": [
"revealjs"
],
"locked": false,
"milestone": "v1.4",
"number": 4530,
"state": "open",
"title": "If slide title is long, its font should be smaller by default",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4530"
} |
### Bug description
If there's a merge conflict indicator in contents of `_freeze`, `quarto render` fails with a JSON error that is not very informative.
<img width="742" alt="Screenshot 2023-02-24 at 6 36 32 PM" src="https://user-images.githubusercontent.com/5965649/221321149-d992d559-8185-4e53-a5f7-d76e0f2dc13c.png">
The current solution is to delete `_freeze` and re-render. This solution works for my use-case but it could be frustrating for a project where maintaining `_freeze` is important. From the message there is no way to identify which file in `_freeze` is causing the issue.
### Checklist
- [ ] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [ ] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [ ] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2023-02-24T23:39:33Z",
"creator": "mine-cetinkaya-rundel",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4529,
"state": "closed",
"title": "Merge conflict indicators in contents of `_freeze` result in uninformative JSON error",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4529"
} |
### Bug description
I have a Quarto website a single page with the following `_quarto.yml`:
```yaml
project:
type: website
website:
title: "test-website"
navbar:
left:
- index.qmd
format: html
```
And the following `index.qmd`:
````markdown
This is page without a title.
And a code chunk with option with `message: false`.
```{r}
#| message: false
#| echo: fenced
library(tidyverse)
```
````
The resulting website looks like the following (note the text on the navbar):
<img width="976" alt="Screenshot 2023-02-24 at 6 21 12 PM" src="https://user-images.githubusercontent.com/5965649/221319717-953b6caf-70c3-4e8b-9790-dc5fd12e8008.png">
But also it is a little silly to include a page on the navbar without a way to click on it. So one could imagine updating `_quarto.yml` to the following:
```yaml
project:
type: website
website:
title: "test-website"
navbar: true
format: html
```
Unfortunately, this doesn't result in a page with a navbar:
<img width="1020" alt="Screenshot 2023-02-24 at 6 30 26 PM" src="https://user-images.githubusercontent.com/5965649/221320576-fa9aefa7-b16c-43e1-837f-9b3bde77a9ac.png">
The following `_quarto.yml` works:
```yaml
project:
type: website
website:
title: "test-website"
navbar:
title: "test-website"
format: html
```
And results in the following site:
<img width="1020" alt="Screenshot 2023-02-24 at 6 31 34 PM" src="https://user-images.githubusercontent.com/5965649/221320708-d1bd4bb3-bc6d-4e09-8141-a3a9849f291d.png">
In summary, I think the issues are:
- The chunk option shouldn't be picked up to be placed in the navbar.
- `navbar: true` should work to give a page with a navbar.
- If a title is needed for `navbar: true` to work, and a `title` is provided for `website`, navbar should inherit it.
This is on Mac OS 13.0.1 with Quarto 1.3.220.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [ ] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-02-24T23:34:36Z",
"creator": "mine-cetinkaya-rundel",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4528,
"state": "closed",
"title": "Title-less web page inherits code chunk option as text on navbar",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4528"
} |
### Bug description
From default website template created with `quarto create`, editing `about.qmd` to include a `revealjs` format along with `output-file`:
```
---
title: "About"
format:
html: default
revealjs:
output-file: about-reveal.html
---
```
Then running:
```
quarto render
```
In `_site/about.html` line 104, the link to the Revealjs slides is relative to my Home directory not the site directory:
```html
<a href="/Users/wickhamc/Documents/posit/multi-format/website-pdf-reveal/about-reveal.html"><i class="bi bi-file-slides"></i>RevealJS</a>
```
This doesn't seem to be a problem with standalone HTML documents.
Mac OS, dev Quarto, RStudio Version 2023.03.0-daily+302 (2023.03.0-daily+302)
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 0,
"created_at": "2023-02-24T22:36:06Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 4526,
"state": "closed",
"title": "Malformed Links in Multi-format when `output-file` is provided",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4526"
} |
### Bug description
Using template website created with `quarto create`, and editing YAML in `about.qmd` to specify a couple of formats:
````
---
title: "About"
format:
revealjs: default
pdf: default
---
````
I would expect if I hit RStudio's "Render Website" I would have `about.pdf` and `about.html` (Revealjs slides) in `_site/`, but I'm missing `about.pdf`:
```
_site
├── about.html
├── index.html
├── search.json
├── site_libs
└── styles.css
```
I actually get the same thing from `quarto preview` (no `about.pdf`), although if I then navigate to `about.html`, `about.pdf` is generated. (Browsing to `about.html` from the Preview of "Render Website", does not trigger a render of `about.pdf`).
`quarto render` generates all files as expected.
I thought the problem didn't occur with `pdf` and `html`:
```
---
title: "About"
format:
html: default
pdf: default
---
```
~~But, I seem to be having the same problem with "Render Website" for this too.~~ While `about.pdf` isn't generated initially, it does get triggered if I hit the PDF version in the "Other Formats" links.
(@mine-cetinkaya-rundel)
This feels a bit like #4469 - but I'm not convinced they are exactly the same problem.
Mac OS, Version 2023.03.0-daily+302 (2023.03.0-daily+302), dev Quarto
### Checklist
- [x] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [x] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [x] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [x] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 1,
"created_at": "2023-02-24T22:27:31Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"bug",
"editors"
],
"locked": false,
"milestone": "v1.4",
"number": 4525,
"state": "open",
"title": "RStudio \"Render Website\" doesn't render all outputs (sometimes)",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4525"
} |
To live alongside other posit cheatsheets: https://posit.co/resources/cheatsheets/?type=posit-cheatsheets&_page=1/
| {
"assignee": "cwickham",
"comments": 2,
"created_at": "2023-02-24T00:14:04Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "v1.4",
"number": 4520,
"state": "open",
"title": "Create a Quarto cheatsheet",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4520"
} |
https://quarto.org/docs/publishing/github-pages.html
There are three methods of publishing mentioned in Overview, but the page hierarchy makes it look like there are two, and the GitHub Action method in buried inside the Publish command.
<img width="161" alt="Screen Shot 2023-02-23 at 3 36 03 PM" src="https://user-images.githubusercontent.com/25964/221055604-c82bbd59-7af6-4195-915a-347c2b82207d.png">
Current sections in "Publish Command":
* [Publish Command](https://quarto.org/docs/publishing/github-pages.html#publish-command)
* [Source Branch](https://quarto.org/docs/publishing/github-pages.html#source-branch)
* [Ignoring Output](https://quarto.org/docs/publishing/github-pages.html#ignoring-output)
* [Publishing](https://quarto.org/docs/publishing/github-pages.html#publishing)
* [GitHub Action](https://quarto.org/docs/publishing/github-pages.html#github-action)
* [Executing Code](https://quarto.org/docs/publishing/github-pages.html#executing-code)
We need to clarify that "Source Branch" and "Ignoring Output" are both required prerequisites for `quarto publish gh-pages`. Then "Publishing" (perhaps better named Local Publish, or Local Render) and "GitHub Action" (e.g. GitHub renders and publishes) are two different ways to use `quarto publish gh-pages`. "Executing Code" is only relevant to "GitHub Action".
Proposed changes:
* Rework overview to be clearer that although there are three options, the second two both involve the publish command (`quarto publish`): rendering and publishing locally, or using GitHub to render and publish.
* Rename and reindent sections in Publish Command:
* Create new section Prerequisites under "Publish Command" (move existing top-level content from Publish Command into this)
* Make Source Branch a level 4 heading
* Make Ignoring Output a level 4 heading
* Rename "Publishing" -> "Local Render"
* Executing Code a level 4 heading
After these changes the hierarchy should look like:
* Publish Command
* Prerequisites
* Source Branch
* Ignoring Output
* Local Render
* GitHub Action
* Executing Code
| {
"assignee": "cwickham",
"comments": 0,
"created_at": "2023-02-23T23:37:40Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation",
"good-first-issue"
],
"locked": false,
"milestone": "v1.4",
"number": 4519,
"state": "open",
"title": "Fix section headings in GitHub Pages Publish Docs",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4519"
} |
https://quarto.org/docs/projects/quarto-projects.html#shared-metadata
Clarify that `format`'s aren't merged.
> So once an individual document defines a format it must define the complete list of formats it wants rendered (i.e. it is going into manual mode). | {
"assignee": "cwickham",
"comments": 0,
"created_at": "2023-02-23T23:01:09Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "v1.4",
"number": 4518,
"state": "open",
"title": "Add `format` special case to discussion of metadata merging",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4518"
} |
### Bug description
I'm not sure if this issue belongs to `quarto` or `kableExtra`, but leaving the report here. Please let me know if this should be reported to `kableExtra`.
Please see below for reprex.
Edit: The issue is related to `pdf` output.
```
---
title: "test_quarto"
format: pdf
---
```
# Knitr
### Without label
```{r}
#| tbl-cap: "Example1"
#| tbl-subcap:
#| - "Cars"
#| - "Pressure"
#| layout-ncol: 1
knitr::kable(head(iris))
knitr::kable(tail(iris))
```
Works fine
### With label
```{r}
#| label: tbl-example1
#| tbl-cap: "Example2"
#| tbl-subcap:
#| - "Cars"
#| - "Pressure"
#| layout-ncol: 1
knitr::kable(head(iris))
knitr::kable(tail(iris))
```
Works fine
# KableExtra
### Without label
It generates two additional empty labels: (a),(b),(c),(d)
```{r}
#| tbl-cap: "Example3"
#| tbl-subcap:
#| - "Cars"
#| - "Pressure"
#| layout-ncol: 1
kableExtra::kable(head(iris))
kableExtra::kable(tail(iris))
```
### With label
```{r}
#| label: tbl-example4
#| tbl-cap: "Example4"
#| tbl-subcap:
#| - "Cars"
#| - "Pressure"
#| layout-ncol: 1
kableExtra::kable(head(iris))
kableExtra::kable(tail(iris))
```
Works now.
Running on RStudio build 353 / R4.2.2
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2023-02-23T22:19:32Z",
"creator": "matthewgson",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 4517,
"state": "open",
"title": "Subcaption issues with and without labels with KableExtra",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4517"
} |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/4455
<div type='discussions-op-text'>
<sup>Originally posted by **iuryt** February 21, 2023</sup>
Hi,
I am trying to write a multilingual web blog using Quarto. I think this software is amazing, but I am having trouble in defining different titles and categories for the blog posts depending on the language. I am using Quarto 1.2.1 CLI.
The post is
```markdown
---
title: Trying Quarto
categories: News
author: "Iury Simoes-Sousa"
date: "2023-02-20"
---
::: {.content-visible when-profile="english"}
This is the first post in a Quarto blog. Welcome!
I plan to post here my thoughts about Science, Technology and Music.
:::
::: {.content-visible when-profile="portuguese"}
Este é o meu primeiro post no meu blog usando Quarto. Seja bem vindo!
Eu pretendo postar aqui as minhas idéias e tutoriais sobre ciência, tecnologia e música.
:::
```
which returns the following for english
and the blog page is
```markdown
---
title: "My Blog"
listing:
contents: posts
sort: "date desc"
type: default
categories: true
sort-ui: false
filter-ui: false
page-layout: full
title-block-banner: true
---
```
Well, if I use what is suggested in #2822
The post will be:
```markdown
---
title: |
::: {.content-visible when-profile="english"}
Trying Quarto
:::
::: {.content-visible when-profile="portuguese"}
Testando o Quarto
:::
categories: News
author: "Iury Simoes-Sousa"
date: "2023-02-20"
---
::: {.content-visible when-profile="english"}
This is the first post in a Quarto blog. Welcome!
I plan to post here my thoughts about Science, Technology and Music.
:::
::: {.content-visible when-profile="portuguese"}
Este é o meu primeiro post no meu blog usando Quarto. Seja bem vindo!
Eu pretendo postar aqui as minhas idéias e tutoriais sobre ciência, tecnologia e música.
:::
```
Which returns the following for english:
and it messes up with the Blog page
</div> | {
"assignee": null,
"comments": 2,
"created_at": "2023-02-23T21:02:22Z",
"creator": "iuryt",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "Future",
"number": 4516,
"state": "open",
"title": "Conditional metada for different profiles on a website",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4516"
} |
### Bug description
Observed with Quarto 1.3.217, but due to randomness I haven't reproduced it on any other version.
Using Ubuntu 20, Firefox 110.0, Chrome 110.0.05481.100
On any project, running `quarto preview` may very rarely result in a failure to display the page in the browser due to random selection of port `5060` or `5061`. When opening `localhost:5061`, Chrome throws `ERR_UNSAFE_PORT` and Firefox throws `This address is restricted. This address uses a network port which is normally used for purposes other than Web browsing. Firefox has canceled the request for your protection.`
The error messages can be reproduced without using `quarto` by trying to open `localhost:5060` or `localhost:5061` on Chrome or Firefox. They won't even try to make a connection, so it doesn't matter if no server is running.
There may be other "restricted" or "unsafe" ports, but I don't know what they are.
The workaround is very simple: CTRL+C and re-run `quarto preview`.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 3,
"created_at": "2023-02-23T19:47:32Z",
"creator": "MattF-NSIDC",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4514,
"state": "closed",
"title": "`quarto preview` can rarely run on restricted/unsafe ports 5060 and 5061, Firefox/Chrome refuse to connect",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4514"
} |
in `src/publish/common/publish.ts`, we currently use the full-buffer version of the crypto API, which requires loading the whole file into memory. We've had user trouble in the past with this and large files (understandably).
TIL that Deno has an extension of the web crypto api through their [standard library](https://deno.land/[email protected]/crypto/mod.ts?s=StdSubtleCrypto) that provides AsyncIterable support for digest() | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-02-23T19:30:56Z",
"creator": "cscheid",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing"
],
"locked": false,
"milestone": "v1.4",
"number": 4513,
"state": "open",
"title": "publish: don't load entire file into memory to compute hash",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4513"
} |
### Bug description
```
$ quarto --version
1.3.217
```
I am on windows, and when trying to render a document with the following frontmatter
```yaml
title: "Example"
format:
confluence-html
```
I'm getting the following error:
```txt
ERROR: The filename, directory name, or volume label syntax is incorrect. (os error 123), stat 'C:\Users\JDoe\AppData\Local\Programs\Quarto\share\formats\html\bootstrap\themes\C:\Users\JDoe\AppData\Local\Programs\Quarto\share\extensions\quarto\confluence\theme.scss.scss'
```
If I'm decomposing the path in Python code, this looks like
```python
root = "/c/Users/JDoe/AppData/Local/Programs/Quarto/share"
path1 = f"{root}/extensions/quarto/confluence/theme.scss"
path2 = f"{root}/formats/html/bootstrap/themes/{path1}.scss"
```
This hints at a bug whereby `path1` is used somewhere instead of [`path1.stem`](https://docs.python.org/3/library/pathlib.html#pathlib.PurePath.stem).
But this is as far as I could go in trying to pinpoint the issue.
---
Github complains about `*.qmd` attachements so I'm giving the source code of a minimal problematic example below:
```markdown
---
title: "Example"
format:
confluence-html
---
Hello! This is an example.
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 17,
"created_at": "2023-02-23T15:38:09Z",
"creator": "m-legrand",
"is_pull_request": false,
"labels": [
"bug",
"windows",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4510,
"state": "closed",
"title": "Confluence HTML output has a wrong path for theme.scss on Windows",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4510"
} |
### Bug description
I'm trying to incorporate the first example from this [site](https://plotly.com/python/sliders/) in a Quarto document that uses the knitr engine. The .qmd is here:
---
title: "test"
---
```{r}
1+1
```
```{python}
#| echo: false
import plotly.graph_objects as go
import numpy as np
# Create figure
fig = go.Figure()
# Add traces, one for each slider step
for step in np.arange(0, 5, 0.1):
fig.add_trace(
go.Scatter(
visible=False,
line=dict(color="#00CED1", width=6),
name="𝜈 = " + str(step),
x=np.arange(0, 10, 0.01),
y=np.sin(step * np.arange(0, 10, 0.01))))
# Make 10th trace visible
fig.data[10].visible = True
# Create and add slider
steps = []
for i in range(len(fig.data)):
step = dict(
method="update",
args=[{"visible": [False] * len(fig.data)},
{"title": "Slider switched to step: " + str(i)}], # layout attribute
)
step["args"][0]["visible"][i] = True # Toggle i'th trace to "visible"
steps.append(step)
sliders = [dict(
active=10,
currentvalue={"prefix": "Frequency: "},
pad={"t": 50},
steps=steps
)]
fig.update_layout(
sliders=sliders
)
fig.show()
```
When I render this, I get an output with three plots like this which isn't intended:
Note that if I specify `engine: jupyter` then it works as intended but doesn't render R blocks.
It also works when calling `py_run_file(test.py)` within R where `test.py` contains the content of the Python block above, so it appears that the `reticulate` package is working as it should on this code block.
Side question: Is it not possible to mix render engines? So have Python render Python code blocks and R render R code blocks?
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 4,
"created_at": "2023-02-23T14:14:33Z",
"creator": "snhansen",
"is_pull_request": false,
"labels": [
"bug",
"upstream"
],
"locked": false,
"milestone": "v1.4",
"number": 4507,
"state": "open",
"title": "Plotly figure not rendered correctly with the knitr engine",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4507"
} |
Description:
Simple text shortcuts like :P don’t get rendered as emoji when published.
Steps to Reproduce:
Expected Result:
Actual Result:
| {
"assignee": "allenmanning",
"comments": 5,
"created_at": "2023-02-23T09:55:54Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4492,
"state": "open",
"title": "Add Emoji support for Confluence",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4492"
} |
{
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-02-23T09:55:12Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4491,
"state": "open",
"title": "Add Support: Table: `tbl-cap-location`",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4491"
} |
|
Confluence ignores %-based width styling when saving to CFT | {
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-02-23T09:53:49Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4490,
"state": "open",
"title": "Tables: Confluence ignores %-based width styling when saving to CFT",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4490"
} |
For an executable code chunk like
````
```{python}
#| label: tbl-planets
#| tbl-cap: Planets
from IPython.display import Markdown
from tabulate import tabulate
table = [["Sun",696000,1989100000],
["Earth",6371,5973.6],
["Moon",1737,73.5],
["Mars",3390,641.85]]
Markdown(tabulate(
table,
headers=["Planet","R (km)", "mass (x 10^29 kg)"]
))
```
````
`python` is not passed to the Writer
```
function CodeBlockConfluence(codeValue, attributes)
local languageValue = attributes and attributes.class or ''
dump(attributes, 'attributes')
dump(codeValue, 'codeValue')
dump(languageValue, 'languageValue')
```
```
languageValue markdown
attributes [("id",""),("class","markdown cell-code")]
``` | {
"assignee": "allenmanning",
"comments": 3,
"created_at": "2023-02-23T09:52:47Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.4",
"number": 4489,
"state": "closed",
"title": "[Confluence] Executable Code Blocks don't pass languageValue to Writer",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4489"
} |
Confluence preview is using Flexbox layout.
Writer is rendering as Tables.
We should change the preview to use tables rather than Flexbox to make it more similar to the CSF rendering. | {
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-02-23T09:51:43Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4488,
"state": "open",
"title": "Preview: Figure Panels are not previewed in tables",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4488"
} |
> You can write markdown that provides a distinct image file format depending on the target output format. To do this simply leave-off the extension, for example
Not yet supported, it currently doesn't append the extension.
```
<ac:image
ac:align="center"
ac:layout="center"
ac:alt=""
ac:src="elephant">
<ri:attachment ri:filename="elephant" />
</ac:image>
``` | {
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-02-23T09:50:13Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4487,
"state": "open",
"title": "Multi-format Figures don't auto-append `png` extension.",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4487"
} |
{
"assignee": "allenmanning",
"comments": 2,
"created_at": "2023-02-23T09:49:15Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4485,
"state": "open",
"title": "`<small></small>` and `<sub></sub>` in tables can sometimes throw Confluence Error",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4485"
} |
|
For documents with more advanced front matter (authors, abstract, etc...), how do these things related to publishing in Confluence?
Example super complicated front matter (that isn't realistic in this scenario, but illustrates a variety of possible document metadata):
```yaml
title: Short Paper
subtitle: A Short Subtitle
author:
- name: Alice Anonymous
email: [email protected]
affiliations:
- id: some-tech
name: Some Institute of Technology
department: Department Name
address: Street Address
city: City
state: State
postal-code: Postal Code
attributes:
corresponding: true
note: This is the first author footnote.
- name: Bob Security
email: [email protected]
affiliations:
- id: another-u
name: Another University
department: Department Name
address: Street Address
city: City
state: State
postal-code: Postal Code
note: |
Another author footnote, this is a very long footnote and it should be a really long footnote. But this footnote is not yet sufficiently long enough to make two lines of footnote text.
- name: Cat Memes
email: [email protected]
affiliations:
- ref: another-u
note: Yet another author footnote.
- name: Derek Zoolander
email: [email protected]
affilations:
- ref: some-tech
abstract: |
This is the abstract. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Vestibulum augue turpis, dictum non malesuada a, volutpat eget velit. Nam placerat turpis purus, eu tristique ex tincidunt et. Mauris sed augue eget turpis ultrices tincidunt. Sed et mi in leo porta egestas. Aliquam non laoreet velit. Nunc quis ex vitae eros aliquet auctor nec ac libero. Duis laoreet sapien eu mi luctus, in bibendum leo molestie. Sed hendrerit diam diam, ac dapibus nisl volutpat vitae. Aliquam bibendum varius libero, eu efficitur justo rutrum at. Sed at tempus elit.
keywords:
- keyword1
- keyword2
date: last-modified
``` | {
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-02-23T09:46:18Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"publishing-confluence",
"research spike"
],
"locked": false,
"milestone": "Future",
"number": 4484,
"state": "open",
"title": "Topic: How Does Author / Affiliation / Document Front Matter Appear in Confluence",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4484"
} |
from @ivelasq
Description:
I am not 100% sure if it's me or something about the posts, but Pages 1 and 2 from this [repo](https://github.com/ivelasq/quarto-confluence-testing) do not show up on Confluence.
Steps to Reproduce:
`quarto render`
`quarto publish confluence`
Expected Result:
All the pages get published on Confluence.
Actual Result:
The `index.qmd`, `about.qmd`, and `page3.qmd` show up on Confluence. `page2.qmd` and `page1.qmd` do not. I get the following errors:
```
[✓] Site Updates [1/5]
[✓] Site Updates [2/5]
(-) Site Updates [3/5]ERROR:
[Confluence] [General] response.status !== 200 Response {
body: ReadableStream { locked: false },
bodyUsed: false,
headers: Headers {
"atl-confluence-via": "h:confluence-prod-us-4-3.prod.atl-paas.net",
"atl-traceid": "9757849621df85de",
"cache-control": "no-cache, no-store, must-revalidate",
"content-type": "application/json",
date: "Wed, 22 Feb 2023 16:52:21 GMT",
"expect-ct": 'report-uri="https://web-security-reports.services.atlassian.com/expect-ct-report/atlassian-proxy", m...',
expires: "Thu, 01 Jan 1970 00:00:00 GMT",
nel: '{"failure_fraction": 0.001, "include_subdomains": true, "max_age": 600, "report_to": "endpoint-1"}',
"report-to": '{"endpoints": [{"url": "https://dz8aopenkvv6s.cloudfront.net"}], "group": "endpoint-1", "include_sub...',
server: "AtlassianEdge",
"strict-transport-security": "max-age=63072000; includeSubDomains; preload",
vary: "Accept-Encoding",
"x-content-type-options": "nosniff",
"x-xss-protection": "1; mode=block"
},
ok: false,
redirected: false,
status: 400,
statusText: "Bad Request",
url: "https://rstudiopbc-sandbox-249.atlassian.net/wiki/rest/api/content"
}
[✓] Site Updates [3/5]
[✓] Site Updates [4/5]
(/) Site Updates [5/5]ERROR:
[Confluence] [General] response.status !== 200 Response {
body: ReadableStream { locked: false },
bodyUsed: false,
headers: Headers {
"atl-confluence-via": "h:confluence-prod-us-4-3.prod.atl-paas.net",
"atl-traceid": "aa2bfadef04b2050",
"cache-control": "no-cache, no-store, must-revalidate",
"content-type": "application/json",
date: "Wed, 22 Feb 2023 16:52:23 GMT",
"expect-ct": 'report-uri="https://web-security-reports.services.atlassian.com/expect-ct-report/atlassian-proxy", m...',
expires: "Thu, 01 Jan 1970 00:00:00 GMT",
nel: '{"failure_fraction": 0.001, "include_subdomains": true, "max_age": 600, "report_to": "endpoint-1"}',
"report-to": '{"endpoints": [{"url": "https://dz8aopenkvv6s.cloudfront.net"}], "group": "endpoint-1", "include_sub...',
server: "AtlassianEdge",
"strict-transport-security": "max-age=63072000; includeSubDomains; preload",
vary: "Accept-Encoding",
"x-content-type-options": "nosniff",
"x-xss-protection": "1; mode=block"
},
ok: false,
redirected: false,
status: 400,
statusText: "Bad Request",
url: "https://rstudiopbc-sandbox-249.atlassian.net/wiki/rest/api/content"
}
[✓] Site Updates [5/5]
```
| {
"assignee": "allenmanning",
"comments": 4,
"created_at": "2023-02-23T09:32:07Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": null,
"number": 4483,
"state": "closed",
"title": "Problems publishing posts on Confluence",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4483"
} |
Problem: Confluence users will not know if a page has been published with Quarto or if it is a standard manual page. Currently, after a Quarto Confluence publish, all inline page comments will be deleted. This can lead to a poor experience of data loss.
With the Confluence APIs, is it possible to disable inline (in the page) comments?
https://support.atlassian.com/confluence-cloud/docs/what-are-confluence-cloud-permissions-and-restrictions/
---
Answer:
There is no permission for disabling inline comments today. You can manage at a space-level permissions for all comments. This isn't something that we can or would want to change with a quarto publish of a sub-page or sub-site. | {
"assignee": "allenmanning",
"comments": 2,
"created_at": "2023-02-23T09:30:00Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"publishing-confluence",
"research spike"
],
"locked": false,
"milestone": "v1.3",
"number": 4482,
"state": "closed",
"title": "[Spike] Can we disable inline comments?",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4482"
} |
Using #4472 create a short code for Confluence Task lists | {
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-02-23T09:28:25Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4481,
"state": "open",
"title": "Task List Support",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4481"
} |
STR
1. Create a document with a non-closed BR `<br>` or image `<img ..>`
2. Publish to confluence
Expected: No Error
Result: Error publishing
work-around, close the element `<br/>` `<img/>`
This is because CSF requires valid XHTML and thus closing the void. | {
"assignee": "allenmanning",
"comments": 1,
"created_at": "2023-02-23T09:10:49Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": null,
"number": 4479,
"state": "closed",
"title": "Error when saving open Void elements like `<br>` `<img>` without ending `/`.",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4479"
} |
Add support for page labels.
https://developer.atlassian.com/cloud/confluence/rest/v1/api-group-content-labels/#api-wiki-rest-api-content-id-label-get | {
"assignee": "allenmanning",
"comments": 0,
"created_at": "2023-02-23T09:08:39Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4478,
"state": "open",
"title": "[Confluence] Labels Support",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4478"
} |
Description:
Definition lists render in Confluence with a ton of white space which looks only so-so. This might just be confluence, so may just need to be closed if this isn't something we can really improve easily.
Steps to Reproduce:
````markdown
---
title: Test DL
---
Term
: This is the definition of the term
````
Expected Result:
Less whitespace
Actual Result:
Lots of whitespace ;-)
| {
"assignee": "allenmanning",
"comments": 2,
"created_at": "2023-02-23T09:05:34Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"bug",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4477,
"state": "open",
"title": "Consider Improving Definition List Formatting If Possible",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4477"
} |
In terms of diagrams, we might be able to get these working by just adding mermaid-format: png to the format when we render for confluence? I could definitely be wrong about this though (more on mermaid options here: https://quarto.org/docs/authoring/diagrams.html#mermaid-formats) | {
"assignee": "allenmanning",
"comments": 2,
"created_at": "2023-02-23T09:01:11Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4476,
"state": "closed",
"title": "[Spike] Mermaid diagrams with `mermaid-format: png`",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4476"
} |
Add Support: Citations & Bibliography Generation
https://rstudiopbc-sandbox-249.atlassian.net/wiki/spaces/QTCT/pages/39814701/Citations+Footnotes | {
"assignee": "allenmanning",
"comments": 4,
"created_at": "2023-02-23T08:57:36Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "Future",
"number": 4475,
"state": "open",
"title": "Add Support: Citations & Bibliography Generation",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4475"
} |
Description:
Display warning if user doesn't have rights to change permissions
Steps to Reproduce:
1. Create a Confluence account where the user doesn't have rights to change permissions - a free account will work for this
2. Publish a quarto document using this account
Expected Result:
Check for rights to change permissions before the publish. If the account doesn't have rights then:
- Prompt with the warning and ask them to confirm before continuing.
- Show warnings during publish
Actual Result:
No check and publish continues with an error message that doesn't prevent one or more documents from being published.
| {
"assignee": "cwickham",
"comments": 0,
"created_at": "2023-02-23T08:52:06Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"documentation",
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4474,
"state": "closed",
"title": "Display warning if user doesn't have rights to change permissions",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4474"
} |
Ok sounds great! A few places to look:
1) The entry point to the `quarto create project` type command is in `src/command/create/cmd.ts`. This supports creating different types of artifacts, so you’ll be most interested in project artifacts.
2) You can see how project artifacts are create in `src/command/create/artifacts/project.ts`.
3) I just made a branch `feature/conf-proj` to show how to scaffold in a new project template for confluence - it was less clean than is ideal since it is mix of the new `quarto create` command and the old infrastructure that supported a legacy `quarto create-project` command.
4) You can basically just head to `src/project/types/project-default.ts` and implement some conditionality to the create function based upon the template (you can see what is happening to produce the default template below).
From JJ:
One other thing in the sample site we should do is have the index page provide a basic hint about workflow (e.g. run quarto preview locally then when you are ready to publish use quarto publish (or something like that, likely with a link to the docs) | {
"assignee": "cwickham",
"comments": 1,
"created_at": "2023-02-23T08:49:07Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"documentation",
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4473,
"state": "closed",
"title": "Create Project Scaffold `quarto create project`",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4473"
} |
### Description
Add support for Confluence Raw Blocks that let's CSF just "pass-through" to Confluence.
### Steps to Reproduce
- Create the following quarto document
````
---
title: "Simple Doc - Confluence Raw Block"
format: native
---
```{=confluence}
<ac:task-list>
<ac:task>
<ac:task-id>1</ac:task-id>
<ac:task-status>incomplete</ac:task-status>
<ac:task-body><span class="placeholder-inline-tasks">Al</span></ac:task-body>
</ac:task>
<ac:task>
<ac:task-id>2</ac:task-id>
<ac:task-status>incomplete</ac:task-status>
<ac:task-body><span class="placeholder-inline-tasks">JJ</span></ac:task-body>
</ac:task>
</ac:task-list>
```
````
- Publish to Confluence
### Expected Result
The task list (and other such Raw Blocks) are preserved.
### Actual Result
It is filtered out.
| {
"assignee": "cwickham",
"comments": 5,
"created_at": "2023-02-23T08:44:59Z",
"creator": "allenmanning",
"is_pull_request": false,
"labels": [
"documentation",
"enhancement",
"publishing-confluence"
],
"locked": false,
"milestone": "v1.3",
"number": 4472,
"state": "closed",
"title": "Add Support: Confluence Raw Block",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4472"
} |
https://quarto.org/docs/prerelease/1.3/embed.html | {
"assignee": "cwickham",
"comments": 1,
"created_at": "2023-02-23T00:58:36Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "v1.3",
"number": 4471,
"state": "closed",
"title": "Review Jupyter Cell Embedding",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4471"
} |
### Bug description
I'm using Quarto 1.2.335 via conda-forge on Ubuntu 20 LTS. I'm not using the RStudio IDE, just editing with vi.
This is related to #4469 somewhat: I encountered these two separate problems trying to accomplish the same goal: Render a webpage which displays a list of links to RevealJS presentations from the same build.
Render works fine until specifying a `format.revealjs` option, e.g. `toc: true`, in `_quarto.yml`, at which point render fails with the following error:
```
ERROR: NotFound: No such file or directory (os error 2), rename
'/path/to/quarto/project/index.html' -> '/path/to/quarto/project/_site/index.html'
```
Steps to reproduce:
1. Create project template
```
quarto create-project sscce-quarto-slides-in-website --type website
```
1. Create `slides/index.qmd` with `format: 'revealjs'` in front-matter.
1. Add link from `index.qmd` to `slides/index.qmd`
1. Add the following to the `format` section of `_quarto.yml` (I believe other settings will also trigger this):
```
revealjs:
toc: true
```
1. `quarto render`, observe the `NotFound` error
1. Note that an `index.html` file has been created outside of the `_site` directory
This issue can also be reproduced from the `reveals-config-breaks-preview` branch in the repo I created for #4469: https://github.com/MattF-NSIDC/sscce-quarto-slides-in-website/tree/revealjs-config-breaks-preview
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 5,
"created_at": "2023-02-22T23:59:58Z",
"creator": "MattF-NSIDC",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 4470,
"state": "closed",
"title": "Render fails when specifying both `revealjs` and `html` formats in `_quarto.yml`",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4470"
} |
### Bug description
Hello all, I'm a new Quarto user and have been having a great time. Thank you :heart:
I'm using Quarto 1.2.335 via conda-forge on Ubuntu 20 LTS. I'm not using the RStudio IDE, just editing with vi.
I've been building a presentation which consists of several `revealjs` slide decks, and I want those to render to GH Pages, and that's working great. However, since I have multiple slide decks, I also want to render an HTML index page which includes links to all the slide decks. This seems to render correctly, but does not _preview_ as expected; on the first run the slides appear as an HTML page using the "cosmo" theme instead of a revealJS presentation. Only after a hot-reload or re-run of the `preview` command do the slides appear as slides.
I was not able to make a reproducible example in a single QMD file, but my process to reproduce this issue was:
1. Create project template
```
quarto create-project sscce-quarto-slides-in-website --type website
```
1. Create `slides/index.qmd` with `format: 'revealjs'` in front-matter
1. Add link from `index.qmd` to `slides/index.qmd`
1. `quarto preview index.qmd`
1. Click the link to view the slides, and it will display as an HTML page, not a RevealJS presentation
1. CTRL+C on the `preview` process, and run it again.
1. Click the link to view the slides, and it will display as a RevealJS presentation
1. Delete the `.quarto` and `_site` directories, do a preview, and the slides will again display as a HTML page, not a RevealJS presentation
I've created a repository with the project state that reproduces the issue, and the details of the issue in `README.md`: https://github.com/MattF-NSIDC/sscce-quarto-slides-in-website
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 17,
"created_at": "2023-02-22T23:46:37Z",
"creator": "MattF-NSIDC",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.4",
"number": 4469,
"state": "open",
"title": "`quarto preview` unexpected non-idempotent behavior",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4469"
} |
Review and update: https://quarto.org/docs/prerelease/1.3/grid.html | {
"assignee": "cwickham",
"comments": 1,
"created_at": "2023-02-22T18:46:23Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": null,
"number": 4466,
"state": "closed",
"title": "Grid Customization Pre-release Highlight Docs",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4466"
} |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/4358
<div type='discussions-op-text'>
<sup>Originally posted by **jimjam-slam** February 14, 2023</sup>
I've been playing around with [listing templates](https://quarto.org/docs/websites/website-listings-custom.html) and metadata listings. The options described in the docs are:
1. [providing a glob of documents to a listing](),
2. [providing inline yaml content](https://quarto.org/docs/websites/website-listings-custom.html#metadata-listings),
3. [providing an external yaml file](https://quarto.org/docs/websites/website-listings-custom.html#metadata-file-listings)
There're a couple of things I think it's worth highlighting:
If you provide inline yaml `contents` in a post's listing, you can iterate over it as `items` for that listing's template. For example, I can provide a list of wines featured in a post under `contents` as a string array and then iterate over them with:
```ejs
<% for (const wine of items) { %>
```
But it's not obvious from the existing docs that if I then want to list the wines featured in a _series_ of posts, I can _also_ write another template for my index page, give it `contents: *.qmd`, then iterate over the wines in each post through its `listing.contents`:
```ejs
<% for (const doc of items) { %>
<a href="<%= doc.path %>"><h2><%= doc.title %></h2></a>
<ul>
<% for (const wine of doc.listing.contents) { %>
<li><%= wine %></li>
<% } %>
</ul>
<% } %>
```
The only reason I mention this is that nested custom metadata is a pretty common use case, and the existing docs present options for surfacing that metadata _either_ in that doc's template _or_ in another doc's template—but not both.
The other thing not explicitly mentioned is that you can also provide a glob string of yaml files, in which case it seems like they're all concatenated into one big array. I don't think this is quite as flexible for a lot of blogging use cases, because you lose the document context here, but it does mean you don't have to worry about going through `listing.contents`—it's the same syntax regardless of where you're accessing the data from.
Anyway, just wanted to highlight these features since they really do allow Quarto to go toe-to-toe with other static site generators (for the relatively few people who might want to pop the hood a bit more)!
[Full gist demo of this functionality here!](https://gist.github.com/jimjam-slam/e9325abcb7c07b64e1f6d7b6a6f88d03)
</div> | {
"assignee": "cwickham",
"comments": 0,
"created_at": "2023-02-22T18:43:43Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "Future",
"number": 4465,
"state": "open",
"title": "Docs enhancement: options for listing templates and metadata listings",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4465"
} |
See conversation at: https://github.com/quarto-dev/quarto-actions/issues/50#issuecomment-1431656051
> quarto-actions is definitely a place with a combination of high complexity, error-proneness and documentation issues. I wonder if it would make sense for us to redesign these docs in the future, and combine them better with the publishing documentation on quarto.org) | {
"assignee": "cwickham",
"comments": 0,
"created_at": "2023-02-22T18:42:45Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "Future",
"number": 4464,
"state": "open",
"title": "Review GitHub Actions Docs",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4464"
} |
Clarify `quarto render`will render all formats:
* https://quarto.org/docs/computations/r.html
```
quarto render document.qmd # defaults to html
```
```r
quarto_render("document.qmd") # defaults to html
```
On that page, this also needs updating:
> When using VS Code there is not yet an integrated Render button for previewing documents. Rather, you should execute the quarto preview command from the VS Code terminal:
* https://quarto.org/docs/computations/python.html#rendering
```
quarto render document.qmd # defaults to html
```
* Clarify render button will render one format at a time. | {
"assignee": "cwickham",
"comments": 0,
"created_at": "2023-02-22T18:36:44Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "v1.4",
"number": 4462,
"state": "open",
"title": "Clarify `quarto render` will render all formats, but Render button will not",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4462"
} |
Blog Post version of https://quarto.org/docs/prerelease/1.3/confluence.html | {
"assignee": "cwickham",
"comments": 1,
"created_at": "2023-02-22T18:32:55Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": null,
"number": 4461,
"state": "closed",
"title": "Confluence Pre-release Blog post",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4461"
} |
Review and update: https://quarto.org/docs/prerelease/1.3/confluence.html (once published) | {
"assignee": "cwickham",
"comments": 3,
"created_at": "2023-02-22T18:31:45Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": "v1.3",
"number": 4460,
"state": "closed",
"title": "Confluence Pre-release Highlight Docs",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4460"
} |
{
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-02-22T16:56:08Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": "v1.3",
"number": 4459,
"state": "closed",
"title": "Allow GitHub issues to point to different repo than edit this page",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4459"
} |
|
Blog Post version of https://quarto.org/docs/prerelease/1.3/multi-format.html | {
"assignee": "cwickham",
"comments": 1,
"created_at": "2023-02-22T03:56:31Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": null,
"number": 4454,
"state": "closed",
"title": "[Docs] Multi-Format Publishing: Blog Post",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4454"
} |
Review and update: https://quarto.org/docs/prerelease/1.3/multi-format.html | {
"assignee": "cwickham",
"comments": 1,
"created_at": "2023-02-22T03:54:43Z",
"creator": "cwickham",
"is_pull_request": false,
"labels": [
"documentation"
],
"locked": false,
"milestone": null,
"number": 4453,
"state": "closed",
"title": "[Docs] Multi-Format Publishing: Pre-release Highlight Docs",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4453"
} |
### Bug description
If you have python 3.6.9 for example quarto will error with the error message:
```
module 'asyncio' has no attribute 'get_running_loop'
```
You can reproduce it by installing it in a virtual environment and executing `quarto check`:
```
$quarto check
[✓] Checking Quarto installation......OK
Version: 1.2.335
Path: /home/mferradou/opt/quarto-1.2.335/bin
[✓] Checking basic markdown render....OK
[✓] Checking Python 3 installation....OK
Version: 3.6.9
Path: /usr/bin/python3
Jupyter: 4.6.3
Kernels: python2, python3
(\) Checking Jupyter engine render....
module 'asyncio' has no attribute 'get_running_loop'
sys:1: RuntimeWarning: coroutine 'get_info' was never awaited
[IPKernelApp] WARNING | Parent appears to have exited, shutting down.
[✓] Checking Jupyter engine render....OK
```
This won't allow you to use the render function.
This was tested on ubuntu x86_64.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 1,
"created_at": "2023-02-22T01:58:18Z",
"creator": "zippeurfou",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 4452,
"state": "closed",
"title": "Quarto does not work with python 3.6",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4452"
} |
### Bug description
Latex isn't rendering correctly with a `\text{#}` character using either Katex or Mathjax.
`file.qmd`:
```
---
jupyter: python3
---
This is a test
$$
w_{\color{orange}{\text{current node #}}}
$$
or this: $a \text{#} b$
```
which was generated from a simple `.ipynb` file which renders like this:
<img width="825" alt="image" src="https://user-images.githubusercontent.com/742407/220462294-a4816779-2540-4609-9175-29c7aadb96a3.png">
the resulting html file, however, looks like this:
<img width="857" alt="image" src="https://user-images.githubusercontent.com/742407/220462418-c80f0923-d199-49e8-a606-3b2d5f509f78.png">
OS: Mac 13.2.1
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 1,
"created_at": "2023-02-21T21:29:39Z",
"creator": "diego898",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 4450,
"state": "closed",
"title": "Latex isn't rendering correctly with a \\text{#} character in either Katex or Mathjax",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4450"
} |
### Bug description
**Problem:**
When including a remote image (from a web URL) inside a (q)md file, the rendering to latex/pdf with quarto fails, but works just fine when directly using pandoc.
**Minimum working example:**
File `issue_remote_image.qmd`:
```
---
title: Test using a remote image in a markdown file
author: John Doe
format:
pdf
---
Here is the image:
```
Rendering to pdf with pandoc works just fine (and the pdf contains the remote image):
```
$ pandoc --from=markdown --to=pdf -o issue_remote_image.pdf issue_remote_image.qmd
```
but rendering with quarto fails:
```
$ quarto render issue_remote_image.qmd
pandoc
to: latex
output-file: issue_remote_image.tex
standalone: true
pdf-engine: xelatex
variables:
graphics: true
tables: true
default-image-extension: pdf
metadata
documentclass: scrartcl
classoption:
- DIV=11
- numbers=noendperiod
papersize: letter
header-includes:
- '\KOMAoption{captions}{tableheading}'
block-headings: true
title: Test using a remote image in a markdown file
author: John Doe
running xelatex - 1
This is XeTeX, Version 3.141592653-2.6-0.999994 (TeX Live 2022/Arch Linux) (preloaded format=xelatex)
restricted \write18 enabled.
entering extended mode
compilation failed- missing packages (automatic installed disabled)
Unable to load picture or PDF file 'https://quarto.org/quarto.png'.
<to be read again>
}
l.156 ...degraphics{https://quarto.org/quarto.png}
see issue_remote_image.log for more information.
```
The problematic line in the generated `issue_remote_image.tex` is the following:
```tex
\includegraphics{https://quarto.org/quarto.png}
```
And I face a similar problem when forcing to use `lualatex` as pdf engine with the yml directive `pdf-engine: lualatex`.
**Config:**
OS: ArchLinux 6.1.11-arch1-1
```
$ quarto -V
1.2.335
```
```
$ quarto pandoc --version
pandoc 2.19.2
Compiled with pandoc-types 1.22.2.1, texmath 0.12.5.2, skylighting 0.13,
citeproc 0.8.0.1, ipynb 0.2, hslua 2.2.1
Scripting engine: Lua 5.4
```
```
$ pandoc --version
pandoc 3.0.1
Features: +server +lua
Scripting engine: Lua 5.4
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 5,
"created_at": "2023-02-21T09:49:28Z",
"creator": "gdurif",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 4443,
"state": "closed",
"title": "Problem with remote images when converting to latex/pdf (works with pandoc but not with quarto)",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4443"
} |
I've recently delved into template partials for PDFs (Latex). When having a template partial for `before-body.tex` and the yaml parameter `code-block-bg` set, the `Shaded` environment is not renewed, as in the `\renewenvironment` is not called.
I've manually added this block into my `before-body`-template and fixed the issue.
```latex
\ifdefined\Shaded
\renewenvironment{Shaded}{
\begin{tcolorbox}[colback={shadecolor}, boxrule=0pt, frame hidden, enhanced, breakable]
}{
\end{tcolorbox}
}
\fi
```
(this only works when `code-bloc-bg` is set and needs to be removed when the parameter is not used)
I think it would be nice to either mention something in the documentation or implement something for the quarto-cli | {
"assignee": "dragonstyle",
"comments": 2,
"created_at": "2023-02-21T09:38:57Z",
"creator": "joelvonrotz",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 4445,
"state": "closed",
"title": "before-body.tex requires renewal of Shaded-environment (PDF)",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4445"
} |
### Bug description
When switching from Source Mode to Visual Mode, Quarto replaces all the footnote identifiers chosen by the user and replaces them with numbers.
The problem is best explained with this video:
[Screencast.webm](https://user-images.githubusercontent.com/101060148/220174374-2613bc7b-c2c7-4668-896c-67638041d81a.webm)
File in the video: [chapter02.md](https://github.com/quarto-dev/quarto-cli/files/10786880/chapter02.md) (GitHub does not allow `qmd` files so I had to change it to `md`)
Quarto CLI version: 1.2.335
VS Code version: 1.75.1
VS Code extension version: 1.68.0
OS: Ubuntu 22.10
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": null,
"comments": 1,
"created_at": "2023-02-20T18:08:06Z",
"creator": "magical-heyrovsky",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": null,
"number": 4439,
"state": "closed",
"title": "VS Code extension: Switching to Visual Mode replaces footnote identifiers chosen by the user with numbers",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4439"
} |
I've created a gadget for editing probability distributions.
This seems to work in inside of a Rmarkdown document.
```{r gadgetInRmd}
gadget <- MakeRegressionGadget(node)
shiny::shinyApp(gadget$ui,gadget$server,options(height=2000))
```
However, I'm trying to move this into a qmd document. Here is my attempt:
```{r gadgetInQuarto}
#| context: server
gadget1 <- MakeRegressionGadget(node)
shiny::shinyApp(gadget1$ui,gadget1$server,options(height=2000))
```
Where node is defined in a bunch of code run in context setup.
In the quarto version my code isn't rendering, and I'm wondering what I'm missing.
I suppose I could try running the function in `gadget$ui()` in a render context; however, then I don't know what to do with `gadget1$server()` which is a three argument function.
Source code for the gadgets is at https://github.com/ralmond/Peanut/R/shinyNode.R if you are curious.
| {
"assignee": "cscheid",
"comments": 2,
"created_at": "2023-02-20T17:28:20Z",
"creator": "ralmond",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 4437,
"state": "closed",
"title": "Including Shiny Gadgets in a Quarto Page",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4437"
} |
### Bug description
The following qmd file:
```
---
format: html
---
{#fig-elephant}
This is illustrated well by @fig-elephant.
```
after rendering results in a notebook with a single markdown cell with this content:
```
#
This is illustrated well by [Figure 1](#fig-elephant).
```
Here, the figure caption is missing.
Screenshot:
While this version, using a figure div:
```
---
format: html
---
::: {#fig-elephant}
{#fig-elephant}
An Elephant
:::
This is illustrated well by @fig-elephant.
```
renders to a notebook with a single markdown cell with this content:
```
#
Figure 1: An Elephant
This is illustrated well by [Figure 1](#fig-elephant).
```
Screenshot:
The figure caption is now present.
Desired outcome: figure caption present in both cases.
I considered using a figure div for my use case, but when combined with `{#fig-elephant fig-width=400 fig-alt="Drawing of an elephant."}` this crashes in during conversion to PDF with a `not in outer par mode` error, probably related to #4142.
Note that also, in both cases, the anchor to the figure does not work (there is no target for the link), but this may be related to #4178.
I am using VSCode to write qmd files, but render them on the command line (Mac OS 11.7), using quarto installed directly from the GitHub repo, commit id #82eae91a0 (which is why quarto --version gives 99.9.9).
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 10,
"created_at": "2023-02-20T12:53:18Z",
"creator": "lexnederbragt",
"is_pull_request": false,
"labels": [
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 4435,
"state": "closed",
"title": "Figure caption missing in Jupyter notebook",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4435"
} |
### Bug description
_No response_
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 5,
"created_at": "2023-02-20T05:29:37Z",
"creator": "mikheyev",
"is_pull_request": false,
"labels": [
"bug",
"needs-repro"
],
"locked": false,
"milestone": null,
"number": 4433,
"state": "closed",
"title": "Lua filters not found when upgrading to pre-release version on Mac OS",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4433"
} |
### Discussed in https://github.com/quarto-dev/quarto-cli/discussions/4424
<div type='discussions-op-text'>
<sup>Originally posted by **fuhrmanator** February 18, 2023</sup>
My publishing requirements ask me to generate a PDF that is PDF/A (archive) compliant. I did some googling, and found a great explanation at <https://www.mathstat.dal.ca/~selinger/pdfa/>. However, I wasn't able to get the metadata into the PDF file according to the documented process. I realized it's because it's hard to know exactly what the `.tex` file is named when `pdflatex` is invoked in Quarto. In my case, it's a book project, so I think the file was `index.tex`, even though the `keep-tex` results in a file with the name of the title of my book. I suppose it's something else when you write an article, etc.
Anyway, I read the docs for the `pdfx` package and found that you can embed the metadata into the `.tex` source, with a vanilla file name that "always" works. I tried it using `header-includes:` and it works well (or seems to). I see the metadata in the PDF, and Acrobat says my PDF is indeed PDF/A when I open it. I haven't fully validated the result with a real validation tool. But it's an encouraging start. Here's what I put in my `_quarto.yml` for a book project.
```yaml
format:
pdf:
header-includes: |
\usepackage[a-1b]{pdfx}
\begin{filecontents*}[overwrite]{\jobname.xmpdata}
\Title{Baking through the ages}
\Author{A. Baker\sep C. Kneader}
\Language{en-GB}
\Keywords{cookies\sep muffins\sep cakes}
\Publisher{Baking International}
\end{filecontents*}
```
The first line loads the `pdfx` package, and the following lines create (overwrite) the metadata file, which is magically created temporarily in the `pdflatex` pipeline (so you don't need to worry about the exact filename, and it stays with your document).
Of course, you must duplicate some of the XMP info that is defined in other Quarto fields, e.g., Title, Author, etc. Maybe one day Quarto can make this happen automagically (in partials), but for now I'm happy I don't have to do a separate conversion step.</div> | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-02-19T15:09:47Z",
"creator": "dragonstyle",
"is_pull_request": false,
"labels": [
"enhancement"
],
"locked": false,
"milestone": "v1.4",
"number": 4426,
"state": "open",
"title": "Support PDF/A-compliant output using pdfx package",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4426"
} |
### Bug description
As stated in the title, `code-fold` works for other code chunks but not for `mermaid`.
````md
---
title: "Mermaid code-fold"
format: html
---
```{mermaid}
%%| echo: true
%%| code-fold: true
%%| code-summary: "Show code"
flowchart LR
id1{{This is the text in the box}}
```
````
Rendered with VS Code 1.75.1
Extension version 1.67.0
Operating System: Manjaro Linux
KDE Plasma Version: 5.26.5
KDE Frameworks Version: 5.102.0
Qt Version: 5.15.8
Kernel Version: 5.15.93-1-MANJARO (64-bit)
Graphics Platform: X11
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 0,
"created_at": "2023-02-18T20:31:55Z",
"creator": "jakub-jedrusiak",
"is_pull_request": false,
"labels": [
"bug",
"mermaid"
],
"locked": false,
"milestone": "v1.3",
"number": 4423,
"state": "closed",
"title": "code-fold doesn't work for mermaid code",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4423"
} |
### Bug description
* Mac OS 12.6.3.
* Latest Quarto downloaded a few minutes ago by pulling and building locally.
* Behavior checked on Safari, Chrome and Firefox, and behavior is the same.
* Running Quarto from the command line
* Complete repo is [here](https://github.com/bryanhanson/CSR) and the page with the bad behavior is [here](https://github.com/bryanhanson/CSR/tree/master/posts/2022-09-26-Linear-Alg-Notes-Pt4).
Not sure what's going on here. I'm hoping you all will recognize the problem. Glad to build a MWE if the problem is not immediately apparent. This was working, not sure when it broke.
A Mermaid diagram on my blog [here](https://chemospec.org/posts/2022-09-26-Linear-Alg-Notes-Pt4/Linear-Alg-Notes-Pt4.html) has the wrong colors, the html formatting of some labels is displayed rather than rendered, and the arrows appear to be pure white (they seem invisible/missing but under the right conditions you can see them as white on a barely grey background).
The Mermaid code works fine if I put it in [Mermaid Live](https://mermaid.live/edit#pako:eNqNkstOwzAQRX_FMhtXKipdsImqIEpJn3QDS2-cZNpa8qM4NiVE-XfcKUGiyoKdde6ZK4_lhha2BJrQnbKn4iCcJ28zbh6ZUIpo4Z0soCKT3I1SYsgn0QNye5uSJ-bs6Tofx9wM4jAqM1ZYFbTpaxn_WFGbsuo9CAd92rlsimXPLByP4EhUhNkHJRxa3cyvl7G4xj-8edNM8hSkP4CbjPIULVmRSl6mHtq2Uxeo2j-aNB_gvMwVoLhAcdk0MSql2FsjlPwSXbzEeIWxsU4LhXiFeM2qWms43y_ebo1sw7qWiDaIXpgswXjp60E3ucVC6_zBooul24vNTeVrBWROdlKp5CbLsrvsvqOLXrrspateur2idEg1xM1kGb9Sww0hnMa31cBpEo8l7ERQnlNu2qiK4O1rbQqaeBdgSMOxFB5mcWcn9AW2379o2lU), here's a png of what it should look like:
Screenshot of (part of) the mis-behaving version (also visible at the link to the post above):
<img width="781" alt="Screen Shot 2023-02-18 at 10 21 00 AM" src="https://user-images.githubusercontent.com/140350/219877794-9c73fefd-80c8-4bce-b303-a5100b922cf0.png">
Any ideas of what's happening? Thank you!
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 8,
"created_at": "2023-02-18T16:50:51Z",
"creator": "bryanhanson",
"is_pull_request": false,
"labels": [
"bug",
"mermaid"
],
"locked": false,
"milestone": "v1.4",
"number": 4421,
"state": "open",
"title": "Mermaid diagram color scheme and formating not as specified",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4421"
} |
### Bug description
I am trying to include the output of {pointblank} validation, which is a complex HTML table based on {gt}. A reprex qmd file looks like this:
````md
---
title: "Untitled"
format: html
---
```{r setup}
library(pointblank)
```
```{r}
mtcars |>
create_agent() |>
interrogate()
```
````
When rendered via `quarto render`, the result looks like this:
Which is different to what is rendered in Rmarkdown and in the quarto doc inline, e.g. the complex heading structure is reduced to a single div and other layout/style features are lost. More complex tables (with steps in the validation output) come out completely garbled.
However, when I set `keep_md: true` like so
````md
---
title: "Untitled"
format:
html:
keep-md: true
---
````
then render the markdown doc via `pandoc --to html test.md -o test.html`, the HTML table in the output is correct:
Simple {gt} tables render correctly in the normal quarto rendering workflow.
This leads me to guess that the problem might be in the default filters that quarto applies during the pandoc rendering step.
## Versions
Quarto version: 1.3.203
RStudio version 2023.03.0-daily+323 (2023.03.0-daily+323)
Session Info
```r
R version 4.2.1 (2022-06-23)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.2
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] pointblank_0.11.3 reprex_2.0.2 devtools_2.4.3 usethis_2.1.6
loaded via a namespace (and not attached):
[1] pillar_1.8.1 compiler_4.2.1 prettyunits_1.1.1 remotes_2.4.2 tools_4.2.1 testthat_3.1.6
[7] digest_0.6.31 pkgbuild_1.3.1 pkgload_1.2.4 gtable_0.3.1 tibble_3.1.8 memoise_2.0.1
[13] lifecycle_1.0.3 pkgconfig_2.0.3 rlang_1.0.6 DBI_1.1.3 cli_3.6.0 rstudioapi_0.14
[19] xfun_0.36 fastmap_1.1.0 withr_2.5.0 dplyr_1.0.10 knitr_1.42 desc_1.4.2
[25] generics_0.1.3 fs_1.6.1 vctrs_0.5.2 grid_4.2.1 tidyselect_1.2.0 rprojroot_2.0.3
[31] prompt_1.0.1 glue_1.6.2 R6_2.5.1 processx_3.6.1 fansi_1.0.3 sessioninfo_1.2.2
[37] blastula_0.3.3 ggplot2_3.4.0 callr_3.7.0 purrr_1.0.1 magrittr_2.0.3 scales_1.2.1
[43] ps_1.7.1 clisymbols_1.2.0 ellipsis_0.3.2 htmltools_0.5.4 rsconnect_0.8.27 gt_0.8.0
[49] assertthat_0.2.1 colorspace_2.0-3 utf8_1.2.2 munsell_0.5.0 cachem_1.0.6 crayon_1.5.2
[55] brio_1.1.3
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "rich-iannone",
"comments": 3,
"created_at": "2023-02-18T11:51:28Z",
"creator": "petrbouchal",
"is_pull_request": false,
"labels": [
"bug",
"tables"
],
"locked": false,
"milestone": "v1.4",
"number": 4419,
"state": "closed",
"title": "Quarto discards complex HTML table elements ",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4419"
} |
### Bug description
Using `hash-type: number` misaligns the title slide on revealjs. Reprex:
````qmd
---
title: Test
subtitle: Test
author: Test
institute: Test
date: today
format:
revealjs:
hash-type: number # "title" works fine
---
````
Version with `hash-type: number`
Version with `hash-type: title`
---
Using the latest nightly build on Fedora 37.
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cderv",
"comments": 2,
"created_at": "2023-02-18T10:13:38Z",
"creator": "wklimowicz",
"is_pull_request": false,
"labels": [
"bug",
"revealjs"
],
"locked": false,
"milestone": "v1.3",
"number": 4418,
"state": "closed",
"title": "`hash-type: number` breaks alignment on title slide",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4418"
} |
### Bug description
I am using quarto version 1.2.269 on Windows 10
RStudio 2022.12.0+353 "Elsbeth Geranium" Release (7d165dcfc1b6d300eb247738db2c7076234f6ef0, 2022-12-03) for Windows
Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) RStudio/2022.12.0+353 Chrome/102.0.5005.167 Electron/19.1.3 Safari/537.36
When I render this document the first image is not centered. The middle image is centered and given a caption. The third image does not have a caption is centered and told explicitly to be centered.
```
---
title: "test"
author: "Victor"
format:
html:
fig-align: center
---
{fig-align="center"}
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "cscheid",
"comments": 2,
"created_at": "2023-02-18T00:25:04Z",
"creator": "victorfeagins",
"is_pull_request": false,
"labels": [
"bug",
"crossref"
],
"locked": false,
"milestone": "v1.4",
"number": 4415,
"state": "open",
"title": "Images not following global figure alignment unless has caption",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4415"
} |
Take this document
````markdown
---
format: gfm
---
::: {.content-visible when-format="gfm"}
Should be shown
:::
Some other text
````
This will not work because our `gfm` format is build on `commonmark`.
https://github.com/quarto-dev/quarto-cli/blob/8ad60b0cf6990c34afc20b3e04609496793406d3/src/format/markdown/format-markdown.ts#L46-L55
So this will work
````markdown
---
format: gfm
---
::: {.content-visible when-format="commonmark"}
Should be shown
:::
Some other text
````
and our global alias too
````markdown
---
format: gfm
---
::: {.content-visible when-format="markdown"}
Should be shown
:::
Some other text
````
We should probably correctly alias our format name, shouldn't we ? | {
"assignee": "cscheid",
"comments": 11,
"created_at": "2023-02-17T16:40:00Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.4",
"number": 4411,
"state": "open",
"title": "Conditional content should alias the user facing format name",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4411"
} |
Following #4099 merge where everything was running fine, it seems that restoring renv environment fail now in new main (probably because something changed and no cache).
Look to solve this
See error
https://github.com/quarto-dev/quarto-cli/actions/runs/4203756760/jobs/7293552958#step:12:792 | {
"assignee": "cderv",
"comments": 0,
"created_at": "2023-02-17T12:44:54Z",
"creator": "cderv",
"is_pull_request": false,
"labels": [],
"locked": false,
"milestone": null,
"number": 4405,
"state": "closed",
"title": "[GHA] Fix issue with new windows workflow",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4405"
} |
### Bug description
@jonthegeek noticed that when searching for "ht" in https://devdevguide.netlify.app/ he was redirected to a non-existing page immediately.
I was able to reproduce the bug with a minimal example https://github.com/maelle/search-bug
In https://github.com/maelle/search-bug/blob/main/summary.qmd I added the necessary Markdown including html code for a redirect (which is something we need to explain to readers of the original book). That code is present in the search index. If you search for "ht" in https://maelle.github.io/search-bug/ you'll get redirected to https://docs.ropensci.org/%3Cpkgname%3E/
I'm guessing it has something to do with the code not being escaped somehow? Yes, that's a very vague guess. :sweat_smile: And a potentially very niche problem.
<details>
RStudio 2022.12.0+353 "Elsbeth Geranium" Release (7d165dcfc1b6d300eb247738db2c7076234f6ef0, 2022-12-03) for Ubuntu Bionic
Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) rstudio/2022.12.0+353 Chrome/102.0.5005.167 Electron/19.1.3 Safari/537.36
Ubuntu
</details>
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [X] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 0,
"created_at": "2023-02-17T12:42:50Z",
"creator": "maelle",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4404,
"state": "closed",
"title": "Search bug when the search index contains HTML code for a redirect (HTML book)",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4404"
} |
### Bug description
I'm trying to have boldface symbols in a math equation. `mathbf` works as it should, but `boldsymbol` or `bm` does not work.
```
---
title: "Test"
format:
pdf:
include-in-header:
text: |
\usepackage{amsmath}
latex-auto-install: true
---
$$\boldsymbol{F}^* = \boldsymbol{I} + \begin{bmatrix} \lambda & 0 \\ 0 & \lambda \end{bmatrix}$$
```
with `\usepackage{bm}` and `\bm{...}` instead of `\boldsymbol{...}` I get
```
compilation failed- error
Extended mathchar used as mathchar (14799929).
<to be read again>
\relax
l.155 \[\boldsymbol{F}
^* = \bm{I} + \begin{bmatrix} \lambda & 0 \\ 0 & \lamb...
see mwe.log for more information.
```
I'm on arch linux
```
➜ quarto --version
1.2.335
```
### Checklist
- [X] Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
- [X] Please [format your issue](https://quarto.org/bug-reports.html#formatting-make-githubs-markdown-work-for-us) so it is easier for us to read the bug report.
- [x] Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
- [X] Please document the operating system you're running. If on Linux, please provide the specific distribution. | {
"assignee": "dragonstyle",
"comments": 8,
"created_at": "2023-02-17T12:35:23Z",
"creator": "koehlerson",
"is_pull_request": false,
"labels": [
"bug"
],
"locked": false,
"milestone": "v1.3",
"number": 4403,
"state": "closed",
"title": "Boldface in equations",
"url": "https://github.com/quarto-dev/quarto-cli/issues/4403"
} |
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