original_string: public function run()
      {
          $this->loader->parse();
          $files = $this->filesystem->getFiles();
  
          // Now we check all the files against the config
          while ($files->valid()) {
              /* @var SplFileInfo $file */
              $file = $files->current();
  
              // Skip symlinks as they are always 0777
              if ($file->isLink()) {
                  $files->next();
                  continue;
              }
  
              $filename = $this->getRelativeFilename($file);
  
              // Skip excluded files, of course.
              if ($this->isExcluded($filename)) {
                  $files->next();
                  continue;
              }
  
              $fileShouldBeExecutable = $this->shouldBeExecutable($filename);
              if (!$fileShouldBeExecutable && $file->isExecutable()) {
                  $this->messageBag->addMessage($file->getPathname(), 'minx');
                  $files->next();
                  continue;
              }
  
              if ($fileShouldBeExecutable && !$file->isExecutable()) {
                  $this->messageBag->addMessage($file->getPathname(), 'plusx');
                  $files->next();
                  continue;
              }
  
              $files->next();
          }
      }
code: public function run()
      {
          $this->loader->parse();
          $files = $this->filesystem->getFiles();
  
          // Now we check all the files against the config
          while ($files->valid()) {
              /* @var SplFileInfo $file */
              $file = $files->current();
  
              // Skip symlinks as they are always 0777
              if ($file->isLink()) {
                  $files->next();
                  continue;
              }
  
              $filename = $this->getRelativeFilename($file);
  
              // Skip excluded files, of course.
              if ($this->isExcluded($filename)) {
                  $files->next();
                  continue;
              }
  
              $fileShouldBeExecutable = $this->shouldBeExecutable($filename);
              if (!$fileShouldBeExecutable && $file->isExecutable()) {
                  $this->messageBag->addMessage($file->getPathname(), 'minx');
                  $files->next();
                  continue;
              }
  
              if ($fileShouldBeExecutable && !$file->isExecutable()) {
                  $this->messageBag->addMessage($file->getPathname(), 'plusx');
                  $files->next();
                  continue;
              }
  
              $files->next();
          }
      }
code_tokens: public function run ( ) { $ this -> loader -> parse ( ) ; $ files = $ this -> filesystem -> getFiles ( ) ; // Now we check all the files against the config while ( $ files -> valid ( ) ) { /* @var SplFileInfo $file */ $ file = $ files -> current ( ) ; // Skip symlinks as they are always 0777 if ( $ file -> isLink ( ) ) { $ files -> next ( ) ; continue ; } $ filename = $ this -> getRelativeFilename ( $ file ) ; // Skip excluded files, of course. if ( $ this -> isExcluded ( $ filename ) ) { $ files -> next ( ) ; continue ; } $ fileShouldBeExecutable = $ this -> shouldBeExecutable ( $ filename ) ; if ( ! $ fileShouldBeExecutable && $ file -> isExecutable ( ) ) { $ this -> messageBag -> addMessage ( $ file -> getPathname ( ) , 'minx' ) ; $ files -> next ( ) ; continue ; } if ( $ fileShouldBeExecutable && ! $ file -> isExecutable ( ) ) { $ this -> messageBag -> addMessage ( $ file -> getPathname ( ) , 'plusx' ) ; $ files -> next ( ) ; continue ; } $ files -> next ( ) ; } }
docstring: Run the permission check and return any errors
  
  @return void
docstring_tokens: Run the permission check and return any errors