How to design a database where parent table has default values I have following tables (Its not actually accessories but I am using it as an analogy),


Accessories {AccessoriesId, Name, other accessory related attributes...}
ClientAccessories (ClientAccessoryId, AccessoriesId, CLIENTID, LastModified, CreatedDate, Username, isDeleted)
EmployeeAccessories (EmployeeAccessoryId, AccessoriesId, EMPLOYEEID, LastModified, CreatedDate, Username, isDeleted)


Now problem is that each Employee and each client will get a set of default accessories, which they can delete/update as well, which will set a flag in there specific table. They will add there own accessories as well in future.

I am not sure about if this is a valid design ?
It might not be the most elegant model - but your description points to 2 (independent) m:n relations between Clients and Accessories and Employees and Accessories.
The usual way to resolve those m:n relations IS to create mapping tables like you did - so nothing wrong from that view point. 
Of course it needs joins to request data over the 3 tables, when you want to know what accessories are still held by a certain Client or employee.

If your clients or employees receive the same initial sets of accessories you can go like @Akina wrote in the comments. Fill a small template table with the sets you want to give new clients / employees and copy the lines over - while filling in the correct clientID / employeeID to the corresponding mapping table.