I'm having another problem using WSO2 API Manager 2.0.0: I have installed it in docker using three containers (one for APIM, one for Analytics and one for MySQL) and I replace some configuration files with my custom version (e.g. DB, server name, gateway setup...).
Both APIM and Analytics are configured to save data in the MySQL container and I am able to see changes in the DB. 

The issue is that I cannot find my APIs neither in the publisher nor in the store after the container has been rebuilt. Changes in the DB persists, I can see the statistics for all my APIs and I get an error if I try to create a new API using the same name or context, but the store is always empty after a new build.

I have also tried to put both `/repository/deployment/server/synapse-config/default` and `/repository/tenants/` in two volumes and I can see the files created in `/.../default/api/` for my APIs, but I cannot figure out the issue.
Should I persists some additional directory not mentioned in the guide?

I don't want to put the whole APIM and Analytics homes in volumes if possible.