I have a Java program that is calling C code through JNI that I'm attempting to run on Linux. The external code consists of two .so files: one for the JNI bindings (built with swig) and the other with the actual functions. I have the two libraries in the same directory and LD\_LIBRARY\_PATH is set correctly. ldd reports no problems when running from the command line, but when I set the LD\_LIBRARY\_PATH to the same value in the "run configurations" dialog in the Eclipse editor and attempt to execute the program, it gets the following error:

java.lang.UnsatisfiedLinkError: [path to libraries]/[JNI binding library].so: [actual code library].so: cannot open shared object file: No such file or directory

This leads me to believe that the JNI wrapper library is loaded successfully, but there is a failure when that library attempts to load the library containing the actual code. Is there any way to debug this further?

I will further note that this problem is happening in the eclipse editor itself and that I haven't attempted to package the code into a jar and run it within a free-standing jvm instance.