INIFILE	settings/include/settings.ini

PRESTATS	yes
MAPPING	yes
POSTSTATS	yes
DAMAGE_ESTIMATE	no
INDEL_REALIGNMENT	no

GERMLINE_CALLING	no

STRELKA	no

AMBER	no
COBALT	no
PURPLE	no

STRUCTURAL_VARIANT_CALLING	yes
MANTA	no
GRIDSS	yes

HEALTHCHECK	no

INIFILE	settings/include/settings.ini

PRESTATS	no
MAPPING no
POSTSTATS	no
DAMAGE_ESTIMATE	no
INDEL_REALIGNMENT	no

GERMLINE_CALLING	no

STRELKA	no

AMBER   yes
COBALT	yes
PURPLE	yes

STRUCTURAL_VARIANT_CALLING	no
MANTA	no
GRIDSS	no

HEALTHCHECK	yes

Switch on amber/cobalt/purple for rerun
Switch on amber/cobalt/purple for rerun
