INIFILE	settings/include/settings.ini

PRESTATS	yes
MAPPING	yes
POSTSTATS	yes
DAMAGE_ESTIMATE	yes
INDEL_REALIGNMENT	yes

GERMLINE_CALLING	yes

STRELKA	yes

AMBER	yes
COBALT	yes
PURPLE	yes

STRUCTURAL_VARIANT_CALLING	yes
MANTA	yes
GRIDSS	no

HEALTHCHECK	yes

INIFILE	settings/include/settings.ini

PRESTATS	yes
MAPPING	yes
POSTSTATS	yes
DAMAGE_ESTIMATE	yes
INDEL_REALIGNMENT	yes

GERMLINE_CALLING	yes

STRELKA	yes

AMBER	yes
COBALT	yes
PURPLE	yes

STRUCTURAL_VARIANT_CALLING	yes
MANTA	yes
GRIDSS	yes

HEALTHCHECK	yes

Enable gridss in default run
Enable gridss in default run
