[indra]

# Path to the REACH reading system's fat JAR
REACHPATH = 

# Version of REACH
REACH_VERSION = 

# Path to the EIDOS reading system's fat JAR
EIDOSPATH = 

# Path to the Sparser reading system folder
SPARSERPATH = 

# Path to the DRUM reading system folder
DRUMPATH = 

# Path to TEES
TEES_PATH =

# The default memory limit for the Java/Scala interface
# (BioPAX, REACH, EIDOS)
INDRA_DEFAULT_JAVA_MEM_LIMIT = 8g

# API keys to access Elsevier content
ELSEVIER_API_KEY = 
ELSEVIER_INST_KEY = 

# API keys to access BioGRID content
BIOGRID_API_KEY = 

# Key to the CrossRef clickthrough API
CROSSREF_CLICKTHROUGH_KEY = 

# Credentials for ndexbio.org
NDEX_USERNAME = 
NDEX_PASSWORD =

# Url and API Key for access to INDRA's Database Rest API
INDRA_DB_REST_URL =
INDRA_DB_REST_API_KEY =

# Default project name for aws resources
DEFAULT_AWS_PROJECT =

# Authentication for the Sofia reader web service
SOFIA_USERNAME =
SOFIA_PASSWORD =

# URL for Gilda grounding service
GILDA_URL = http://grounding.indra.bio

# The base URL for an INDRA Ontology service instance.
# If not set, instances of the IndraOntology are used locally.
INDRA_ONTOLOGY_URL =
[indra]

# Path to the REACH reading system's fat JAR
REACHPATH = 

# Version of REACH
REACH_VERSION = 

# Path to the EIDOS reading system's fat JAR
EIDOSPATH = 

# Path to the Sparser reading system folder
SPARSERPATH = 

# Path to the DRUM reading system folder
DRUMPATH = 

# Path to TEES
TEES_PATH =

# The default memory limit for the Java/Scala interface
# (BioPAX, REACH, EIDOS)
INDRA_DEFAULT_JAVA_MEM_LIMIT = 8g

# API keys to access Elsevier content
ELSEVIER_API_KEY = 
ELSEVIER_INST_KEY = 

# Key to the CrossRef clickthrough API
CROSSREF_CLICKTHROUGH_KEY = 

# Credentials for ndexbio.org
NDEX_USERNAME = 
NDEX_PASSWORD =

# Url and API Key for access to INDRA's Database Rest API
INDRA_DB_REST_URL =
INDRA_DB_REST_API_KEY =

# Default project name for aws resources
DEFAULT_AWS_PROJECT =

# Authentication for the Sofia reader web service
SOFIA_USERNAME =
SOFIA_PASSWORD =

# URL for Gilda grounding service
GILDA_URL = http://grounding.indra.bio

# The base URL for an INDRA Ontology service instance.
# If not set, instances of the IndraOntology are used locally.
INDRA_ONTOLOGY_URL =

Remove Biogrid API key from default config
Remove Biogrid API key from default config
