INIFILE	settings/include/settings.ini

PRESTATS	no
MAPPING	yes
POSTSTATS	no
DAMAGE_ESTIMATE	no
INDEL_REALIGNMENT	yes

GERMLINE_CALLING	no
GERMLINE_RERUN	no

STRELKA	yes
RUN_STRELKA_MAIN	yes

AMBER	yes
AMBER_RERUN	no
COBALT	yes
COBALT_RERUN	no
PURPLE	yes

STRUCTURAL_VARIANT_CALLING	yes
MANTA	yes
BPI_RERUN	no

GRIDSS	no
GRIDSS_REUSE_POSTSTATS	no

HEALTHCHECK	yes

Create ini for downsample sample pipeline
DEV-445: Create ini for downsample sample pipeline
