# This file defines the default settings for all workflows.
# These settings can be overridden in the workflow-specific
# configuration file.

[Execution]
# Wait thirty seconds before checking outputs.
job_finished_timeout = 30
# The OHSU AIRC SGE is constrained to 200 concurrent jobs.
# The max is set to 120 to allow for other job submissions.
max_jobs = 120

[SGE]
# The Sun Grid Engine parameters.
plugin_args = {'qsub_args': '-l h_rt=00:30:00,mf=1G'}

# This file defines the default settings for all workflows.
# These settings can be overridden in the workflow-specific
# configuration file.

[Execution]
# Wait thirty seconds before checking outputs.
job_finished_timeout = 30
# The OHSU AIRC SGE is constrained to 200 concurrent jobs.
# Work around a possible Nipype bug by setting the max jobs
# very low. Even when max_jobs is set to 120 as is done
# below, the pipeline fails with a SGE message that the
# number of jobs exceeds 200. Nothing in the logs indicate
# the source of the problem.
# # The max is set to 120 to allow for other job submissions.
#max_jobs = 120
max_jobs=16

[SGE]
# The Sun Grid Engine parameters.
plugin_args = {'qsub_args': '-l h_rt=00:30:00,mf=1G'}

Work around Nipype max_jobs bug.
Work around Nipype max_jobs bug.
