[pytest]
norecursedirs = treetime_augur
addopts = --doctest-modules --ignore=flu/flu.prepare.py --ignore=flu/flu.process.py --ignore=flu/deprecated_flu_prediction.py --ignore=flu/deprecated_report.py --ignore=flu/deprecated_seasonal_flu_NA.py --ignore=flu/deprecated_train_prediction.py tests/ flu/

[pytest]
norecursedirs = treetime_augur
addopts = --doctest-modules tests/ base/io_util.py base/sequences_prepare.py base/sequences_process.py base/fitness_model.py base/titer_model.py

Include specific files to test instead of ignoring.
Include specific files to test instead of ignoring.
