INIFILE	settings/include/settings.ini

REALIGNMENT_MASTER_QUEUE    all.q
REALIGNMENT_MASTER_TIME    72:0:0
REALIGNMENT_MASTER_THREADS    1
REALIGNMENT_MASTER_MEM    16
REALIGNMENT_QUEUE    all.q
REALIGNMENT_TIME    72:0:0
REALIGNMENT_THREADS    1
REALIGNMENT_MERGETHREADS    2
REALIGNMENT_MEM    6
REALIGNMENT_SCATTER    32

MAPPING	no
INDEL_REALIGNMENT	yes

POSTSTATS	no
DAMAGE_ESTIMATE	no

GERMLINE_CALLING	no

STRELKA	no
AMBER	no
COBALT	no
PURPLE	no
GRIDSS	no

HEALTHCHECK	no

Add an ini to run realignment with SBP settings
Add an ini to run realignment with SBP settings

To ensure we'll run into the same memory issue
