bwa =
SortSam =
AddOrReplaceReadGroups = RGID=4 RGLB=lib1 RGPL=illumina RGPU=unit1 RGSM=20
MarkDuplicates =
RealignerTargetCreator =
IndelRealigner =
BaseRecalibrator =
PrintReads =
HaplotypeCaller = --emitRefConfidence GVCF -variant_index_type LINEAR -variant_index_parameter 128000

Add missing default config file.
[Genomics]: Add missing default config file.
