INIFILE	settings/include/settings.ini

PRESTATS	no
MAPPING	no
POSTSTATS	yes
DAMAGE_ESTIMATE	yes
INDEL_REALIGNMENT	no

GERMLINE_CALLING	yes
GERMLINE_RERUN	no

STRELKA	yes
RUN_STRELKA_MAIN	yes

AMBER	yes
AMBER_RERUN	no
COBALT	yes
COBALT_RERUN	no
PURPLE	yes

STRUCTURAL_VARIANT_CALLING	yes
MANTA	yes
BPI_RERUN	no

GRIDSS	yes
GRIDSS_REUSE_POSTSTATS	no

HEALTHCHECK	yes

Add ini for tertiary analysis only
Add ini for tertiary analysis only
