sudo: true
dist: trusty
language: python
python:
  - "3.6"
services:
  - docker
before_install:
  - sudo apt-get -qq update
  - sudo apt-get install -y sshpass
install:
  - docker pull gtcg/sv-callers-gridengine
  - docker pull gtcg/sv-callers-slurm
  - docker run -d -p 10022:22 --name wf-ge gtcg/sv-callers-gridengine
  - docker run -d -p 10023:22 --name wf-slurm gtcg/sv-callers-slurm
script:
  - |
    sshpass -p javagat ssh -p 10022 xenon@localhost \
      "/bin/bash -l -c '. activate wf; snakemake -v; qinfo"
  - |
    sshpass -p javagat ssh -p 10023 xenon@localhost \
      "/bin/bash -l -c '. activate wf; snakemake -v; sinfo'"
  - |
    [ $(find data -name *.vcf|wc -l) -eq '12' ] && exit 0 || exit 1;

sudo: true
dist: trusty
language: python
python:
  - "3.6"
services:
  - docker
before_install:
  - sudo apt-get -qq update
  - sudo apt-get install -y sshpass
install:
  - docker pull gtcg/sv-callers-gridengine
  - docker pull gtcg/sv-callers-slurm
  - docker run -d -p 10022:22 gtcg/sv-callers-gridengine
  - docker run -d -p 10023:22 gtcg/sv-callers-slurm
script:
  - |
    sshpass -p javagat ssh -v -p 10022 xenon@localhost \
      "/bin/bash -l -c '. activate wf; snakemake -v; qinfo"
  - |
    sshpass -p javagat ssh -v -p 10023 xenon@localhost \
      "/bin/bash -l -c '. activate wf; snakemake -v; sinfo'"
  - |
    [ $(find data -name *.vcf|wc -l) -eq '12' ] && exit 0 || exit 1;

Increase verbosity to debug ssh
Increase verbosity to debug ssh
