# Bismark genome preparation for GRCh37
---
attributes:
  name: bismark
  version: broad-20120813
recipe:
  full:
    recipe_type: bash
    recipe_cmds:
      - |
        mkdir -p bismark
        cd bismark
        ln -s ../seq/GRCh37.fa .
        ln -s ../seq/GRCh37.fa.fai .
        bismark_genome_preparation .
    recipe_outfiles:
      - Bisulfite_Genome/CT_conversion/BS_CT.1.bt2
      - Bisulfite_Genome/CT_conversion/BS_CT.2.bt2
      - Bisulfite_Genome/CT_conversion/BS_CT.3.bt2
      - Bisulfite_Genome/CT_conversion/BS_CT.4.bt2
      - Bisulfite_Genome/CT_conversion/BS_CT.rev.1.bt2
      - Bisulfite_Genome/CT_conversion/BS_CT.rev.2.bt2
      - Bisulfite_Genome/CT_conversion/genome_mfa.CT_conversion.fa
      - Bisulfite_Genome/GA_conversion/BS_GA.1.bt2
      - Bisulfite_Genome/GA_conversion/BS_GA.2.bt2
      - Bisulfite_Genome/GA_conversion/BS_GA.3.bt2
      - Bisulfite_Genome/GA_conversion/BS_GA.4.bt2
      - Bisulfite_Genome/GA_conversion/BS_GA.rev.1.bt2
      - Bisulfite_Genome/GA_conversion/BS_GA.rev.2.bt2
      - Bisulfite_Genome/GA_conversion/genome_mfa.GA_conversion.fa

Add Bismark genome preparation for GRCh37
Add Bismark genome preparation for GRCh37
