homepage: ''
changelog-type: ''
hash: 128cf57a1e00c5a65c89a9eaba4b2d352b3592dd9764d23546fa1beadc844b35
test-bench-deps: {}
maintainer: egg@tbi.univie.ac.at
synopsis: Unsupervized construction of RNA family models
changelog: ''
basic-deps:
  bytestring: -any
  edit-distance: -any
  EntrezHTTP: ! '>=1.0.0'
  split: -any
  base: ! '>=4.5 && <5'
  time: -any
  filepath: -any
  RNAlien: -any
  process: -any
  matrix: -any
  parsec: -any
  hierarchical-clustering: -any
  blastxml: ! '>=0.3.2'
  containers: -any
  cassava: -any
  Taxonomy: ! '>=1.0.1'
  biocore: -any
  ClustalParser: ! '>=1.1.0'
  biofasta: -any
  cmdargs: -any
  either-unwrap: -any
  BlastHTTP: -any
  HTTP: -any
  random: -any
  vector: -any
  ViennaRNAParser: ! '>=1.2.6'
  directory: -any
all-versions:
- '1.0.0'
author: Florian Eggenhofer
latest: '1.0.0'
description-type: haddock
description: ! 'RNAlien is a tool for automatic construction of RNAfamily models from
  a single sequence.


  It is available as a commandline tool, for testing or construction of few sequences
  the webservice can be used.


  The source code of RNAlien, as well as the webserver is open source and available
  via GitHub (License GPL-3):


  * <https://github.com/eggzilla/RNAlien RNAlien>


  * <https://github.com/eggzilla/AlienServer AlienServer>


  TaxonomyTools which can be used to visualise the organisms included in a RNAlien
  result can be found here (License GPL-3):


  * <https://github.com/eggzilla/TaxonomyTools TaxonomyTools-Github>


  * <https://hackage.haskell.org/package/Taxonomy TaxonomyTools-Hackage>


  For instruction how to use RNAlien please see the <http://rna.tbi.univie.ac.at/rnalien/help
  Help page>.


  Dependencies:


  * <http://infernal.janelia.org/ Infernal>


  * <http://www.clustal.org/omega/#Download clustal-omega>


  * <http://www.bioinf.uni-freiburg.de/Software/LocARNA/#download Locarna>


  * <https://www.tbi.univie.ac.at/~wash/RNAz/ RNAz>


  * <http://www.tbi.univie.ac.at/RNA/index.html#download ViennaRNA package>


  Installation via cabal-install:


  > cabal install RNAlien'
license-name: GPL-3

Update from Hackage at 2015-10-29T16:23:17+0000
Update from Hackage at 2015-10-29T16:23:17+0000
