# ACMG regions: http://iobio.io/2016/03/29/acmg56/
# https://github.com/lpantano/custom_genome_annotation
---
attributes:
  name: ACMG56_genes
  version: 20160629
recipe:
  full:
    recipe_type: bash
    recipe_cmds:
      - |
        baseurl=https://raw.githubusercontent.com/lpantano/custom_genome_annotation/master/acmg56.hg38.bed
        dir=coverage/prioritize/actionable
        mkdir -p $dir
        cd $dir
        wget --no-check-certificate -c -O ACMG56.bed $baseurl
    recipe_outfiles:
      - coverage/prioritize/actionable/ACMG56.bed

# ACMG regions: http://iobio.io/2016/03/29/acmg56/
# https://github.com/lpantano/custom_genome_annotation
---
attributes:
  name: ACMG56_genes
  version: 20160726
recipe:
  full:
    recipe_type: bash
    recipe_cmds:
      - |
        baseurl=https://raw.githubusercontent.com/lpantano/custom_genome_annotation/master/acmg56.hg38.bed
        dir=coverage/prioritize/actionable
        mkdir -p $dir
        cd $dir
        wget --no-check-certificate -c -O ACMG56.bed $baseurl
    recipe_outfiles:
      - coverage/prioritize/actionable/ACMG56.bed

Fix chr naming for ACMG
Fix chr naming for ACMG
