language: ruby
rvm:
  - "1.9.3"
  - "2.0.0"
  - "2.1.3"
  - "2.2.0"
before_install:
  - wget -P ~ http://mafft.cbrc.jp/alignment/software/mafft-7.205-with-extensions-src.tgz
  - tar -zxvf ~/mafft-7.205-with-extensions-src.tgz -C ~
  - mkdir ~/mafft
  - ruby -pi -e "gsub(/^PREFIX = \/usr\/local/, 'PREFIX = ~/mafft/')" ~/mafft-7.205-with-extensions/core/Makefile
  - (cd ~/mafft-7.205-with-extensions/core/ && make clean && make && make install)
  - export PATH=$PATH:~/mafft/bin
  - which mafft
script: bundle exec rake test
cache: bundler 
sudo: false
addons:
  code_climate:
    repo_token: 53b568ce70cefc91f4ee27f1ee901136d863d90ef6f8155cee2ba9b1248dc502
language: ruby
rvm:
  - "1.9.3"
  - "2.0.0"
  - "2.1.3"
  - "2.2.0"
before_install:
  - wget -P ~ http://mafft.cbrc.jp/alignment/software/mafft-7.205-with-extensions-src.tgz
  - tar -zxvf ~/mafft-7.205-with-extensions-src.tgz -C ~
  - mkdir ~/mafft
  - ruby -pi -e "gsub(/^PREFIX = \/usr\/local/, 'PREFIX = ~/mafft/')" ~/mafft-7.205-with-extensions/core/Makefile
  - (cd ~/mafft-7.205-with-extensions/core/ && make clean && make && make install)
  - export PATH=$PATH:~/mafft/bin
  - mkdir -p ~/fake_blast/bin
  - touch ~/fake_blast/bin/blastdbcmd
  - export PATH=$PATH:~/fake_blast/bin
script: bundle exec rake test
cache: bundler 
sudo: false
addons:
  code_climate:
    repo_token: 53b568ce70cefc91f4ee27f1ee901136d863d90ef6f8155cee2ba9b1248dc502
Add a fake blastdbcmd to the PATH so can fool the Arg validator that blast is installed
Add a fake blastdbcmd to the PATH so can fool the Arg validator that blast is installed
