name:
  MMAP Pipeline
host:
steps: # An ordered list of steps
  - 
    image: "dleehr/go-blast"
    infiles:
      CONT_INPUT_ORFS_FILE: '/Users/dcl9/Data/mmap/example/MMAP_example.glimmer'
      CONT_INPUT_BLAST_DB: '/Users/dcl9/Data/go-blastdb/go-seqdb'
    outfiles:
      CONT_OUTPUT_BLAST_RESULTS: '/Users/dcl9/Data/output/pipelined-blast.csv'
name:
  MMAP Pipeline
host:
steps: # An ordered list of steps
  -
    image: "dleehr/genovo:"
    infiles:
      CONT_INPUT_READS_FILE: '/Users/dcl9/Data/mmap-docker/raw/MMAP_example.fasta'
    outfiles:
      CONT_OUTPUT_CONTIGS_FILE: '/Users/dcl9/Data/mmap-docker/assembled/MMAP_example-contigs.fasta'
    parameters:
      CONT_INPUT_ASSEMBLE_ITERATIONS: '10'
  - 
    image: "dleehr/go-blast"
    infiles:
      CONT_INPUT_ORFS_FILE: '/Users/dcl9/Data/mmap/example/MMAP_example.glimmer'
      CONT_INPUT_BLAST_DB: '/Users/dcl9/Data/go-blastdb/go-seqdb'
    outfiles:
      CONT_OUTPUT_BLAST_RESULTS: '/Users/dcl9/Data/output/pipelined-blast.csv'
Add genovo step to pipeline
Add genovo step to pipeline

Includes a parameter
