image: continuumio/miniconda3:4.1.11

before_script:
  - conda config --add channels conda-forge
  - conda config --add channels defaults
  - conda config --add channels r
  - conda config --add channels bioconda
  - conda install snakemake
stages:
    - rulegraph
    - run
    
# DAG
rulegraph:
  stage: rulegraph
  script: 
    - snakemake --configfile tests/config.remote.yaml --rulegraph --use-conda

run:
  stage: run
  script:
    - snakemake --configfile tests/config.remote.yaml --use-conda -j 8

image: continuumio/miniconda3:4.1.11

before_script:
  - conda config --add channels conda-forge
  - conda config --add channels defaults
  - conda config --add channels r
  - conda config --add channels bioconda
  - conda install snakemake
stages:
    - rulegraph
    - run
    
# DAG
rulegraph:
  stage: rulegraph
  script: 
    - snakemake --configfile tests/config.remote.yaml --rulegraph --use-conda

run:
  stage: run
  script:
    - python conf.py
    - snakemake --use-conda -j 8

Create yaml config during test
Create yaml config during test
