# Template for human RNA-seq using Illumina prepared samples
---
details:
  - analysis: RNA-seq
    genome_build: GRCh37
    # include a lane (run group ID) for each sample
    # lane: 1
    # to do multi-sample variant calling, assign samples the same metadata / batch
    metadata:
       batch: your-arbitrary-batch-name
       phenotype: tumor
       tissue: AVG
    algorithm:
      aligner: tophat2 #can be star
      quality_format: Standard
      trim_reads: read_through
      adapters: [truseq, polya]
      strandedness: unstranded #can be stranded
      fusion_mode: oncofuse
      

# Template for human RNA-seq using Illumina prepared samples
---
details:
  - analysis: RNA-seq
    genome_build: GRCh37
    # include a lane (run group ID) for each sample
    # lane: 1
    # to do multi-sample variant calling, assign samples the same metadata / batch
    metadata:
       batch: your-arbitrary-batch-name
       phenotype: tumor
       tissue: AVG
    algorithm:
      aligner: tophat2 #can be star
      quality_format: Standard
      trim_reads: read_through
      adapters: [truseq, polya]
      strandedness: unstranded #can be stranded


Remove fusion_mode from the default template.
Remove fusion_mode from the default template.