build:
  number: 0
  skip: True # [osx] since variant-effect-predictor is not there yet

package:
  name: vcf2maf
  version: 1.6.12

source:
  fn: v1.6.12.tar.gz
  url: https://github.com/mskcc/vcf2maf/archive/v1.6.12.tar.gz
  md5: ebdba06c46650b3f185d237f6819a209

requirements:
  build:
    - perl-threaded
    - variant-effect-predictor
    - samtools
  run:
    - perl-threaded
    - variant-effect-predictor
    - samtools

test:
  commands:
    - vcf2maf.pl --help

about:
  home: https://github.com/mskcc/vcf2maf
  license: Apache
  summary: Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms

extra:
  notes: |
    This package installs only vcf2maf and does not integrate with the variant-effect-predictor (VEP). To
    do so, please follow the instructions at https://github.com/mskcc/vcf2maf/blob/master/README.md.

build:
  number: 0
  skip: True # [osx] since variant-effect-predictor is not there yet

package:
  name: vcf2maf
  version: 1.6.12

source:
  fn: v1.6.12.tar.gz
  url: https://github.com/mskcc/vcf2maf/archive/v1.6.12.tar.gz
  md5: ebdba06c46650b3f185d237f6819a209

requirements:
  build:
    - perl-threaded
    - variant-effect-predictor
    - samtools
    - htslib
  run:
    - perl-threaded
    - variant-effect-predictor
    - samtools
    - htslib

test:
  commands:
    - vcf2maf.pl --help

about:
  home: https://github.com/mskcc/vcf2maf
  license: Apache
  summary: Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms

extra:
  notes: |
    This package installs only vcf2maf and does not integrate with the variant-effect-predictor (VEP). To
    do so, please follow the instructions at https://github.com/mskcc/vcf2maf/blob/master/README.md.

Add tabix (htslib) as requirement for vcf2maf
Add tabix (htslib) as requirement for vcf2maf
