#!/usr/bin/env cwl-runner
cwl:tool: exome_pipeline.cwl
reference:
  class: File
  path: keep:591f8a4326389d97bbbb01ddd1bcd606+8203/GRCh38_full_analysis_set_plus_decoy_hla.fa
mills:
  class: File
  path: keep:591f8a4326389d97bbbb01ddd1bcd606+8203/Mills_and_1000G_gold_standard.indels.hg38.vcf.gz
known_indels:
  class: File
  path: keep:591f8a4326389d97bbbb01ddd1bcd606+8203/Homo_sapiens_assembly38.known_indels.vcf.gz
dbsnp:
  class: File
  path: keep:591f8a4326389d97bbbb01ddd1bcd606+8203/Homo_sapiens_assembly38.dbsnp138.vcf.gz
interval_list:
  class: File
  path: keep:d8abfaae11ae3416b6bb95f72671d133+205/xgen-exome-research-panel-targets.interval_list
bams:
  - { class: File, path: '' }
  - { class: File, path: '' }
readgroups: ['', '']


Add exome pipeline template yaml.
Add exome pipeline template yaml.
