homepage: ''
changelog-type: ''
hash: b8a2e83455df8cc4f08354e0f28625d0a16c94a5d54fda667d7e3a8bfeb369f3
test-bench-deps: {}
maintainer: florian.eggenhofer@univie.ac.at
synopsis: Libary for parsing, processing and vizualization of taxonomy data
changelog: ''
basic-deps:
  bytestring: -any
  base: ! '>=4.5 && <5'
  text: -any
  parsec: -any
  graphviz: -any
  fgl: -any
  either-unwrap: -any
  aeson: -any
  vector: -any
all-versions:
- '1.0.1'
author: Florian Eggenhofer
latest: '1.0.1'
description-type: haddock
description: ! 'Haskell cabal Taxonomy libary contains tools, parsers, datastructures
  and visualisation

  for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.


  It can utilize information from the <http://www.ncbi.nlm.nih.gov/taxonomy Entrez>
  REST interface via <https://github.com/eggzilla/EntrezHTTP EntrezHTTP>,

  as well as from the files of the Taxonomy database <ftp://ftp.ncbi.nih.gov/pub/taxonomy/
  dump>.


  Input data is parsed into a FGL based datastructure, which enables a wealth of processing

  steps like node distances, retrieval of parent nodes or extraction of

  subtrees.


  Trees can be visualised via dot-format (<http://graphviz.org/ graphviz>)


  <<http://www.tbi.univie.ac.at/~egg/taxonomy.svg>>


  or via json-format (<http://d3js.org/d3js>).


  The <https://hackage.haskell.org/package/TaxonomyTools TaxonomyTools> package contains
  tools based on this package.'
license-name: GPL-3

Update from Hackage at 2015-09-10T14:38:08+0000
Update from Hackage at 2015-09-10T14:38:08+0000
