---
cranrepo: http://cran.fhcrc.org/
cran:
  - cghFLasso
  - ggplot2
  - gsalib
  - gtools
  - matrixStats
  - rainbow
  - WriteXLS
cran-after-bioc:
  - PSCBS
biocrepo: http://bioconductor.org/biocLite.R
bioc:
 - BiocStyle
 - cn.mops
 - DEXSeq
 - DNAcopy
github:
  - Bioconductor-mirror/BubbleTree@6a85d81;2.1.4
#github:
#  - genome/bmm@b49c57a
#  - chapmanb/sciClone@e8ed9d0
---
cranrepo: http://cran.fhcrc.org/
cran:
  - devtools
  - cghFLasso
  - ggplot2
  - gsalib
  - gtools
  - matrixStats
  - rainbow
  - WriteXLS
  - reshape
  - plyr
  - dplyr
  - knitr
  - gplots
  - GGally
  - ggdendro
  - gridExtra
  - pheatmap
cran-after-bioc:
  - PSCBS
biocrepo: http://bioconductor.org/biocLite.R
bioc:
 - BiocStyle
 - cn.mops
 - DEXSeq
 - DNAcopy
github:
  - Bioconductor-mirror/BubbleTree@6a85d81;2.1.4
  - hbc/CHBUtils
  - lpantano/DEGreport@b8a5e15
#github:
#  - genome/bmm@b49c57a
#  - chapmanb/sciClone@e8ed9d0

Add r libraries for bcbio-rnaseq.
Add r libraries for bcbio-rnaseq.
