# You can use this file to create a conda environment for this pipeline:
#   conda env create -f environment.yml
name: nfcore-rnaseq-1.0dev
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - conda-forge::openjdk=8.0.144 # Needed for FastQC - conda build hangs without this
  - fastqc=0.11.7
  - trim-galore=0.4.5
  - star=2.6.0c
  - hisat2=2.1.0
  - picard=2.18.7
  - bioconductor-dupradar=1.8.0
  - conda-forge::r-data.table=1.11.4
  - conda-forge::r-gplots=3.0.1
  - bioconductor-edger=3.20.7
  - conda-forge::r-markdown=0.8
  - preseq=2.0.3
  - rseqc=2.6.4
  - samtools=1.8
  - stringtie=1.3.4
  - subread=1.6.1
  - multiqc=1.5

# You can use this file to create a conda environment for this pipeline:
#   conda env create -f environment.yml
name: nfcore-rnaseq-1.0dev
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - conda-forge::openjdk=8.0.144 # Needed for FastQC - conda build hangs without this
  - fastqc=0.11.7
  - trim-galore=0.5
  - star=2.6.0c
  - hisat2=2.1.0
  - picard=2.18.7
  - bioconductor-dupradar=1.8.0
  - conda-forge::r-data.table=1.11.4
  - conda-forge::r-gplots=3.0.1
  - bioconductor-edger=3.20.7
  - conda-forge::r-markdown=0.8
  - preseq=2.0.3
  - rseqc=2.6.4
  - samtools=1.9
  - stringtie=1.3.4
  - subread=1.6.1
  - multiqc=1.6
  - deeptools=3.3.1

Update Dockerfile to prep for BigWig support
Update Dockerfile to prep for BigWig support
