---
channels:
  - bcbio
  - bioconda
  - r
minimal:
bio_nextgen:
  - bamtools
  - bcftools
  - bedtools=2.24.0
  - bwa
  - bio-vcf
  - cnvkit
  - cutadapt
  - freebayes
  - grabix
  - hmmlearn
  - hisat2
  - htseq
  - metasv
  - moreutils
  - parallel
  - pyloh
  - phylowgs
  - pytabix
  - pythonpy
  - sailfish
  - samtools
  - scalpel
  - star
  - stringtie
  - subread
  - svtyper
  - wham
  - varscan
r:
  - r
  - r-devtools
  - r-rcpp
  - r-rcurl
  - r-rgl
  - r-rsqlite 
  - r-stringi

---
channels:
  - bcbio
  - bioconda
  - r
minimal:
bio_nextgen:
  - bamtools
  - bcbio-prioritize
  - bcftools
  - bedtools=2.24.0
  - bwa
  - bio-vcf
  - cnvkit
  - cutadapt
  - freebayes
  - grabix
  - hmmlearn
  - hisat2
  - htseq
  - metasv
  - moreutils
  - parallel
  - pyloh
  - phylowgs
  - pytabix
  - pythonpy
  - sailfish
  - samtools
  - simple_sv_annotation
  - scalpel
  - star
  - stringtie
  - subread
  - svtyper
  - wham
  - varscan
  - vawk
r:
  - r
  - r-devtools
  - r-rcpp
  - r-rcurl
  - r-rgl
  - r-rsqlite 
  - r-stringi

Add dependencies for bcbio structural variant prioritization
Add dependencies for bcbio structural variant prioritization
