details:
  - analysis: SNP calling
    algorithm:
      #aligner: bwa
      aligner: novoalign
      variantcaller: [gatk, samtools]
      #variantcaller: gatk-haplotype
      #variantcaller: freebayes
      #variantcaller: cortex
      #sv_detection: hydra
      ensemble:
        format-filters: [DP < 4]
        classifiers: [DP, QUAL, ReadPosEndDist, gms_illumina, AD, PL, FS, Entropy, HRun, MFE, NBQ, MQ]
        trusted_pct: 0.65
      quality_format: Standard
      coverage_interval: regional
      trim_reads: true
      align_split_size: 9000
      variant_regions: ../data/automated/variant_regions-variantcall.bed
    description: Test1
    genome_build: hg19
    lane: 7

details:
  - analysis: SNP calling
    algorithm:
      #aligner: bwa
      aligner: novoalign
      variantcaller: [gatk, samtools]
      #variantcaller: gatk-haplotype
      #variantcaller: freebayes
      #variantcaller: cortex
      #sv_detection: hydra
      # ensemble:
      #   format-filters: [DP < 4]
      #   classifiers: [DP, QUAL, ReadPosEndDist, gms_illumina, AD, PL, FS, Entropy, HRun, MFE, NBQ, MQ]
      #   trusted_pct: 0.65
      quality_format: Standard
      coverage_interval: regional
      trim_reads: true
      align_split_size: 9000
      variant_regions: ../data/automated/variant_regions-variantcall.bed
    description: Test1
    genome_build: hg19
    lane: 7

Comment out ensemble tests by default until more standard
Comment out ensemble tests by default until more standard
