# Packages available in the Homebrew and Linuxbrew package manager
---
bio_nextgen:
  alignment:
    - bwa
    - bowtie2
    - novoalign
  utilities:
    - bamtools
    - bedtools==2.17.0
    - fastqc
    - qualimap
    - sambamba
  analysis:
    #- cufflinks
    - chapmanb/cbl/samtools==0.1.19
    - bcftools
    #- tophat
  variant:
    - glia
    - lumpy-sv
    - tabix
    - vcflib
    - vcftools
# Packages available in the Homebrew and Linuxbrew package manager
---
bio_nextgen:
  alignment:
    - bwa
    - bowtie2
    - novoalign
  utilities:
    - bamtools
    - bedtools
    - fastqc
    - qualimap
    - sambamba
  analysis:
    #- cufflinks
    - chapmanb/cbl/samtools==0.1.19
    - bcftools
    #- tophat
  variant:
    - glia
    - lumpy-sv
    - tabix
    - vcflib
    - vcftools
Remove bedtools version restriction. Released 2.18.1 now builds cleanly
Remove bedtools version restriction. Released 2.18.1 now builds cleanly
