---
bio_nextgen:
  alignment:
    - star
  utilities:
    - biobambam
    - rnaseqc
  analysis:
    - cufflinks
    - picard
    - tophat
  variant:
    - bcbio_variation
    - gatk
    - grabix
    - mutect
    - pbgzip
    - snpeff
    - varscan
  needs_64bit:
    - ucsc_tools

---
bio_nextgen:
  alignment:
    - star
  utilities:
    - biobambam
    - rnaseqc
    - alientrimmer
    - featurecounts
  analysis:
    - cufflinks
    - picard
    - tophat
  variant:
    - bcbio_variation
    - gatk
    - grabix
    - mutect
    - pbgzip
    - snpeff
    - varscan
  needs_64bit:
    - ucsc_tools

Add AlienTrimmer and featureCounts to minimal flavor.
Add AlienTrimmer and featureCounts to minimal flavor.
