name: matam

channels:
- conda-forge
- bioconda
- defaults


dependencies:
  - gcc_linux-64
  - make
  - cmake
  - autoconf
  - automake
  - coreutils # Centos6 (otherwise sort --parallel is unrecognized)
  - wget
  - bzip2
  - zlib
  - curl
  - sed
  - git
  - python >=3.5
  - numpy
  - samtools=1.9=h8571acd_11 # samtools libcrypto.so.1.0.0 error (https://github.com/sunbeam-labs/sunbeam/issues/181)
  - sga
  - sortmerna
  - vsearch
  - rdptools
  - krona
  - pytest
  - exonerate=2.2


prefix: /home/lcouderc/miniconda3

name: matam

channels:
- conda-forge
- bioconda
- defaults


dependencies:
  - gcc_linux-64
  - make
  - cmake
  - autoconf
  - automake
  - coreutils # Centos6 (otherwise sort --parallel is unrecognized)
  - wget
  - bzip2
  - zlib
  - curl
  - sed
  - git
  - python >=3.5
  - numpy
  - samtools=1.9=h8571acd_11 # samtools libcrypto.so.1.0.0 error (https://github.com/sunbeam-labs/sunbeam/issues/181)
  - sga
  - sortmerna
  - vsearch
  - rdptools
  - krona
  - pytest
  - exonerate=2.2
  - quast==5.0.2


prefix: /home/lcouderc/miniconda3

Add quast to the dependency list
Add quast to the dependency list
