bio_nextgen:
- atropos;env=python3
- bedtools=2.27.1
- fastqc>=0.11.8
- gffread
- goleft
- hisat2
- hts-nim-tools
- kallisto>=0.43.1
- mosdepth
- multiqc
- multiqc-bcbio
- picard
- pizzly
- pysam>=0.13.0
- pythonpy
- qsignature
- qualimap
- r-base
- r-wasabi
- r=3.5.1
- sailfish
- salmon
- sambamba
- samtools=1.9
- seqtk
- staden_io_lib>=1.14.12
- star
- subread
- tophat;env=python2
- xorg-libxt
channels:
- conda-forge
- bioconda
minimal:
- awscli
- bzip2
- ncurses
- nomkl
- readline
- ucsc-fatotwobit

bio_nextgen:
- atropos
- bedtools=2.27.1
- fastqc>=0.11.8
- gffread
- goleft
- hisat2
- hts-nim-tools
- kallisto>=0.43.1
- mosdepth
- multiqc
- multiqc-bcbio
- picard
- pizzly
- pysam>=0.13.0
- pythonpy
- qsignature
- qualimap
- r-base
- r-wasabi
- r=3.5.1
- sailfish
- salmon
- sambamba
- samtools=1.9
- seqtk
- staden_io_lib>=1.14.12
- star
- subread
- tophat;env=python2
- xorg-libxt
channels:
- conda-forge
- bioconda
minimal:
- awscli
- bzip2
- ncurses
- nomkl
- readline
- ucsc-fatotwobit

Put atropos in main environment for RNA-seq container.
Put atropos in main environment for RNA-seq container.
