os: linux
dist: bionic
language: generic

before_install:
  - wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
  - bash Miniconda3-latest-Linux-x86_64.sh -b -p ~/bcbio-vm/anaconda
  - export PATH=~/bcbio-vm/anaconda/bin:$PATH

install: conda install --yes -c conda-forge -c bioconda bcbio-nextgen bcbio-nextgen-vm

script:
  - pytest -p no:cacheprovider -p no:stepwise tests/test_cwl.py::test_cwl_rnaseq -v

os: linux
dist: bionic
language: generic

before_install:
  - wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
  - bash Miniconda3-latest-Linux-x86_64.sh -b -p ~/bcbio-vm/anaconda
  - export PATH=~/bcbio-vm/anaconda/bin:$PATH

install: conda install --yes -c conda-forge -c bioconda bcbio-nextgen bcbio-nextgen-vm

jobs:
  include:
    - script: pytest -p no:cacheprovider -p no:stepwise tests/test_cwl.py::test_cwl_docker_somatic_workflow -v
    - script: pytest -p no:cacheprovider -p no:stepwise tests/test_cwl.py::test_cwl_rnaseq -v

Add CWL somatic workflow test to TravisCI
Add CWL somatic workflow test to TravisCI
