---
# Configuration file defining python specific libraries on pypi to install
# using easy install
pypi:
  # infrastructure
  - amqplib
  - BeautifulSoup
  - boto
  - fabric
  - ipython
  - Logbook
  - lxml
  - mako
  - nose
  - numpy
  - paste
  - pastescript
  - pycrypto
  - python-cjson
  - pyOpenSSL
  - pyyaml
  - routes
  - simplejson
  - sphinx
  - StarCluster 
  - webhelpers
  - webob
  - xlrd
  - yolk
  # build
  - cython
  - Pyrex
  - virtualenv
  # concurrency/web
  - pyzmq
  - tornado
  - Twisted
  # science
  - biopython
  - bcbio-nextgen
  - ruffus
  #- cogent
  - DendroPy
  - HTSeq
  - matplotlib
  - networkx
  - pandas
  - pybedtools
  - pygr
  - pysam
  - PyVCF
  - rpy2
  - rpy2-bioconductor-extensions
  - scikits.learn
  - scikits.statsmodels
  - scipy
  # databases
  - CouchDB
  - h5py
  - MySQL-python
  - pymongo
  - pysqlite
  - psycopg2
  - SQLAlchemy
  # visualization
  - gnuplot-py
  - PIL
  - pydot
  - pygooglechart
  - reportlab

## compile problems
  #- tables
  #- pygraphviz
  #- pysparse
  #- sympy

---
# Configuration file defining python specific libraries on pypi to install
# using easy install
pypi:
  # infrastructure
  - amqplib
  - BeautifulSoup
  - boto
  - distribute
  - fabric
  - ipython
  - Logbook
  - lxml
  - mako
  - nose
  - numpy
  - paste
  - pastescript
  - pycrypto
  - python-cjson
  - pyOpenSSL
  - pyyaml
  - routes
  - simplejson
  - sphinx
  - StarCluster 
  - webhelpers
  - webob
  - xlrd
  - yolk
  # build
  - cython
  - Pyrex
  - virtualenv
  # concurrency/web
  - pyzmq
  - tornado
  - Twisted
  # science
  - biopython
  - bcbio-nextgen
  - ruffus
  #- cogent
  - DendroPy
  - HTSeq
  - matplotlib
  - networkx
  - pandas
  - pybedtools
  - pygr
  - pysam
  - PyVCF
  - rpy2
  - rpy2-bioconductor-extensions
  - scikits.learn
  - scikits.statsmodels
  - scipy
  # databases
  - CouchDB
  - h5py
  - MySQL-python
  - pymongo
  - pysqlite
  - psycopg2
  - SQLAlchemy
  # visualization
  - gnuplot-py
  - PIL
  - pydot
  - pygooglechart
  - reportlab

## compile problems
  #- tables
  #- pygraphviz
  #- pysparse
  #- sympy

Update system python distribute; newer versions required for some downstream packages like MySQL-python
Update system python distribute; newer versions required for some downstream packages like MySQL-python
