# Custom transcripts for effects prediction
# Tweaks canonical transcripts in effects predictors like snpEff.
---
attributes:
  name: effects_transcript
  version: 2017-02-22
recipe:
  full:
    recipe_type: bash
    recipe_cmds:
      - |
        COMMIT=f2e7af839a9b847be9e391fb04274ef3d6340294
        mkdir -p snpeff/transcripts
        cd snpeff/transcripts
        wget --no-check-certificate -O canonical_cancer.txt https://raw.githubusercontent.com/AstraZeneca-NGS/reference_data/$COMMIT/transcripts/canon_cancer_replacement.txt
    recipe_outfiles:
      - snpeff/transcripts/canonical_cancer.txt

# Custom transcripts for effects prediction
# Tweaks canonical transcripts in effects predictors like snpEff.
---
attributes:
  name: effects_transcript
  version: 2017-03-16
recipe:
  full:
    recipe_type: bash
    recipe_cmds:
      - |
        COMMIT=93d7d3794e6afe39d92e1abc0c56406373f98501
        mkdir -p snpeff/transcripts
        cd snpeff/transcripts
        wget --no-check-certificate -O canonical_cancer.txt https://raw.githubusercontent.com/AstraZeneca-NGS/reference_data/$COMMIT/transcripts/canon_cancer_replacement.txt
    recipe_outfiles:
      - snpeff/transcripts/canonical_cancer.txt

Update cancer_effect_transcipts: add TP53, ARID1B, TET2, CEBPA, PIK3C2G
Update cancer_effect_transcipts: add TP53, ARID1B, TET2, CEBPA, PIK3C2G
