# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python application

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

jobs:
  build:

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python 3.8
      uses: actions/setup-python@v2
      with:
        python-version: 3.8
    - name: Install dependencies
      run: |
        # $CONDA is an environment variable pointing to the root of the miniconda directory
        # $CONDA/bin/conda env update --file environment.yml --name base
        while read requirement; do $CONDA/bin/conda install --yes $requirement; done < requirements.txt
    - name: Lint with flake8
      run: |
        $CONDA/bin/conda install flake8
        # stop the build if there are Python syntax errors or undefined names
        $CONDA/bin/flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        $CONDA/bin/flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test with pytest
      run: |
        $CONDA/bin/pytest

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Python application

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

jobs:
  build:

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2
    - name: Set up Python 3.8
      uses: actions/setup-python@v2
      with:
        python-version: 3.8
    - name: Install dependencies
      run: |
        # $CONDA is an environment variable pointing to the root of the miniconda directory
        # $CONDA/bin/conda env update --file environment.yml --name base
        # Install requirements except for h5writer which must be from pip
        grep -v h5writer requirements.txt | while read requirement; do $CONDA/bin/conda install --yes $requirement; done
        pip install h5writer
    - name: Lint with flake8
      run: |
        $CONDA/bin/conda install flake8
        # stop the build if there are Python syntax errors or undefined names
        $CONDA/bin/flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        $CONDA/bin/flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test with pytest
      run: |
        $CONDA/bin/pytest

Exclude h5writer from the conda install
Exclude h5writer from the conda install
