name: TextMiningCounter
version: 0.1
url: https://github.com/jakelever/pubrunner/tree/master/examples/TextMiningCounter
resources:
   full:
#      - PUBMED:
#         format: txt
      - PMCOA:
         format: txt
   test:
#      - PUBMED_CUSTOM:
#         pmids: 29590681
#         format: txt
#         rename: PUBMED
      - PMCOA_TESTFILE:
         format: txt
         rename: PMCOA
run:
#   - python Count.py --inFile {IN:PUBMED/%} --outFile {OUT:counts/%.txt}
   - python Count.py --inFile {IN:PMCOA/%} --outFile {OUT:counts/%.txt}
   - python Sum.py --inDir {IN:counts} --outFile {OUT:textminingcount.txt}
output: textminingcount.txt

name: TextMiningCounter
version: 0.1
url: https://github.com/jakelever/pubrunner/tree/master/examples/TextMiningCounter
resources:
   full:
      - PUBMED:
         format: txt
      - PMCOA:
         format: txt
   test:
      - PUBMED_CUSTOM:
         pmids: 29590681
         format: txt
         rename: PUBMED
      - PMCOA_CUSTOM:
         pmcids: 5776432
         format: txt
         rename: PMCOA
run:
   - python Count.py --inFile {IN:PUBMED/%} --outFile {OUT:counts/%.txt}
   - python Count.py --inFile {IN:PMCOA/%} --outFile {OUT:counts/%.txt}
   - python Sum.py --inDir {IN:counts} --outFile {OUT:textminingcount.txt}
output: textminingcount.txt

Use PMCOA_CUSTOM for test project instead of specific file on FTP
Use PMCOA_CUSTOM for test project instead of specific file on FTP
