---
# Configuration file defining python specific libraries on pypi to install
# using easy install
pypi:
  # infrastructure
  - amqplib
  - BeautifulSoup
  - fabric
  - Logbook
  - lxml
  - mako
  - paste
  - pastescript
  - pycrypto
  - python-cjson
  - pyOpenSSL
  - routes
  - simplejson
  - sphinx
  - StarCluster 
  - webhelpers
  - webob
  - xlrd
  # build
  - Pyrex-real
  # concurrency/web
  - Twisted
  # science
  - cutadapt
  - ruffus
  - DendroPy
  - HTSeq
  - pybedtools
  - pygr
  - PyVCF
  - rpy2
  - ramp
  # databases
  - CouchDB
  - MySQL-python
  - pymongo
  - pysqlite
  - psycopg2
  # visualization
  - gnuplot-py
  - PIL
  - pypdf
  - reportlab
  # cloudman
  - oca
  - hoover
  - Mako
conda:
  - boto
  - biopython
  - cython
  - h5py
  - ipython
  - matplotlib
  - networkx
  - nose
  - numpy
  - pandas
  - pysam
  - pyyaml
  - pyzmq
  - scikit-learn
  - scipy
  - SQLAlchemy
  - statsmodels
  - tornado
  
## compile problems
  #- cogent
  #- tables
  #- pygraphviz
  #- pysparse
  #- sympy
  #- pydot # references python 3-only pyparsing
  #- pygooglechart
  #- rpy2-bioconductor-extensions

---
# Configuration file defining python specific libraries on pypi to install
# using easy install
pypi:
  # infrastructure
  - amqplib
  - BeautifulSoup
  - fabric
  - Logbook
  - lxml
  - mako
  - paste
  - pastescript
  - pycrypto
  - python-cjson
  - pyOpenSSL
  - routes
  - simplejson
  - sphinx
  - StarCluster 
  - webhelpers
  - webob
  - xlrd
  # build
  - Pyrex-real
  # concurrency/web
  - Twisted
  # science
  - cutadapt
  - ruffus
  - DendroPy
  - HTSeq
  - pybedtools
  - pygr
  - PyVCF
  - rpy2
  - ramp
  # databases
  - CouchDB
  - MySQL-python
  - pymongo
  - pysqlite
  - psycopg2
  # visualization
#  - gnuplot-py
  - PIL
  - pypdf
  - reportlab
  # cloudman
  - oca
  - hoover
  - Mako
conda:
  - boto
  - biopython
  - cython
  - h5py
  - ipython
  - matplotlib
  - networkx
  - nose
  - numpy
  - pandas
  - pysam
  - pyyaml
  - pyzmq
  - scikit-learn
  - scipy
  - SQLAlchemy
  - statsmodels
  - tornado
  
## compile problems
  #- cogent
  #- tables
  #- pygraphviz
  #- pysparse
  #- sympy
  #- pydot # references python 3-only pyparsing
  #- pygooglechart
  #- rpy2-bioconductor-extensions

Remove gnuplot-py, it is missing from pypi at the moment.
Remove gnuplot-py, it is missing from pypi at the moment.
