"""
=========================================
PCA 2d projection of of Iris dataset
=========================================

The Iris dataset represents 3 kind of Iris flowers (Setosa, Versicolour
and Virginica) with 4 attributes: sepal length, sepal width, petal length
and petal width.

Principal Component Analysis (PCA) applied to this data identifies the
combination of attributes (principal components, or directions in the
feature space) that account for the most variance in the data. Here we
plot the different samples on the 2 first principal components.
"""

import pylab as pl

from scikits.learn import datasets
from scikits.learn.pca import PCA

iris = datasets.load_iris()

X = iris.data
y = iris.target
target_names = iris.target_names

pca = PCA(n_comp=2)
X_r = pca.fit(X).transform(X)

# Percentage of variance explained for each components
print pca.explained_variance_

pl.figure()
pl.hold('on')
for c, i, target_name in zip("rgb", [0, 1, 2], target_names):
   pl.scatter(X_r[y==i,0], X_r[y==i,1], c=c, label=target_name)
pl.hold('off')
pl.legend()
pl.title('PCA of IRIS dataset')

pl.show()


"""
=========================================
PCA 2d projection of of Iris dataset
=========================================

The Iris dataset represents 3 kind of Iris flowers (Setosa, Versicolour
and Virginica) with 4 attributes: sepal length, sepal width, petal length
and petal width.

Principal Component Analysis (PCA) applied to this data identifies the
combination of attributes (principal components, or directions in the
feature space) that account for the most variance in the data. Here we
plot the different samples on the 2 first principal components.
"""

import pylab as pl

from scikits.learn import datasets
from scikits.learn.pca import PCA

iris = datasets.load_iris()

X = iris.data
y = iris.target
target_names = iris.target_names

pca = PCA(n_comp=2)
X_r = pca.fit(X).transform(X)

# Percentage of variance explained for each components
print pca.explained_variance_

pl.figure()
for c, i, target_name in zip("rgb", [0, 1, 2], target_names):
   pl.scatter(X_r[y==i,0], X_r[y==i,1], c=c, label=target_name)
pl.legend()
pl.title('PCA of IRIS dataset')

pl.show()


Remove non-necessary lines from PCA example
MISC: Remove non-necessary lines from PCA example
