#!/usr/bin/env python
from EPPs.common import StepEPP, step_argparser

class GenerateHamiltonInputUPL(StepEPP):
    """"Generate a CSV containing the necessary information to batch up ot 9 User Prepared Library receipt
    into one DCT plate. Requires input and output plate containers and well positions from LIMS. Volume to be pipetted
    is taken from the step UDF "DNA Volume (uL)"""

    def _run(self):
        all_inputs = self.process.all_inputs()
        csv_array=[]
        csv_column_headers=['Input Plate,','Input Well','Output Plate','Output Well,','DNA Volume,','TE Volume']
        csv_array.append(csv_column_headers)


        for input in all_inputs:
            if input.type='Analyte'
                outputs = input.outputs_per_input()
                for output in outputs:
                    if output.type ='Analyte'
                        output_container=output.container.name
                        output_well=output.container.location


                csv_line=[input.container.name,input.container.location,output_container,output_well,self.process.udf['DNA Volume (uL)'],'0']
                csv_array.append(csv_line)
        print(csv_array)

def main():
    p = step_argparser()
    args = p.parse_args()
    load_config()

    action = GenerateHamiltonInputUPL(args.step_uri, args.username, args.password, args.log_file)
    action.run()


if __name__ == '__main__':
    main()
Test updated for change to assign_to_workflow_receive_sample.py in last commit.
Test updated for change to assign_to_workflow_receive_sample.py in last commit.
